Title: Implements the SoftBart Algorithm
Description: Implements the SoftBart model of described by Linero and Yang (2018) <doi:10.1111/rssb.12293>, with the optional use of a sparsity-inducing prior to allow for variable selection. For usability, the package maintains the same style as the 'BayesTree' package.
Author: Antonio R. Linero [aut, cre]
Maintainer: Antonio R. Linero <antonio.linero@austin.utexas.edu>
Diff between SoftBart versions 1.0.2 dated 2025-05-10 and 1.0.3 dated 2025-11-23
DESCRIPTION | 13 MD5 | 30 - NEWS.md | 27 + R/RcppExports.R | 54 +-- R/SoftBart.R | 682 ++++++++++++++++++++++----------------------- R/gsoftbart_regression.R | 494 ++++++++++++++++---------------- R/pdsoftbart.R | 392 ++++++++++++------------- R/posterior_probs.R | 128 ++++---- inst/doc/SoftBart-Vig.Rnw | 14 inst/doc/SoftBart-Vig.pdf |binary man/pdsoftbart.Rd | 2 man/posterior_probs.Rd | 2 man/softbart.Rd | 2 src/soft_bart.cpp | 19 + src/soft_bart.h | 2 vignettes/SoftBart-Vig.Rnw | 14 16 files changed, 949 insertions(+), 926 deletions(-)
Title: Object-Oriented Interface for Offline Change-Point Detection
Description: A collection of efficient implementations of popular offline change-point detection algorithms, featuring a consistent, object-oriented interface for practical use.
Author: Minh Long Nguyen [aut, cre],
Toby Hocking [aut],
Charles Truong [aut]
Maintainer: Minh Long Nguyen <edelweiss611428@gmail.com>
Diff between rupturesRcpp versions 1.0.1 dated 2025-11-22 and 1.0.2 dated 2025-11-23
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/zzz.R | 2 +- README.md | 2 +- src/VAR.cpp | 4 ++-- 5 files changed, 11 insertions(+), 11 deletions(-)
Title: Goodness-of-Fit Tests for Capture-Recapture Models
Description: Performs goodness-of-fit tests for capture-recapture models
as described by Gimenez et al. (2018) <doi:10.1111/2041-210X.13014>.
Also contains several functions to process capture-recapture data.
Author: Olivier Gimenez [aut, cre] ,
Jean-Dominique Lebreton [ctb],
Remi Choquet [ctb],
Roger Pradel [ctb]
Maintainer: Olivier Gimenez <olivier.gimenez@cefe.cnrs.fr>
This is a re-admission after prior archival of version 1.0.2 dated 2022-07-11
Diff between R2ucare versions 1.0.2 dated 2022-07-11 and 1.0.3 dated 2025-11-23
DESCRIPTION | 45 - MD5 | 162 ++-- NAMESPACE | 64 - NEWS.md | 66 + R/coef_mixtures.R | 102 +- R/deviance_mixture.R | 82 +- R/expval_table.R | 46 - R/gof_test.R | 70 - R/group_data.R | 102 +- R/group_data_gen.R | 144 ++-- R/ind_test_22.R | 108 +-- R/ind_test_rc.R | 104 +- R/inv_logit_gen.R | 38 - R/marray.R | 158 ++-- R/multimarray.R | 186 ++--- R/overall_CJS.R | 102 +- R/overall_JMV.R | 112 +-- R/pool2K.R | 134 +-- R/pooling_ct.R | 130 +-- R/pooling_mixtures.R | 226 +++--- R/read_headed.R | 106 +- R/read_inp.R | 70 - R/reconstitution.R | 100 +- R/repmat.R | 38 - R/test2cl.R | 176 ++-- R/test2ct.R | 176 ++-- R/test3Gsm.R | 636 +++++++++-------- R/test3Gsr.R | 380 +++++----- R/test3Gwbwa.R | 490 ++++++------- R/test3sm.R | 212 ++--- R/test3sr.R | 176 ++-- R/testMitec.R | 322 ++++----- R/testMltec.R | 312 ++++---- R/ungroup_data.R | 136 +-- R/zzz.R | 12 build/vignette.rds |binary inst/CITATION | 37 - inst/doc/vignette_R2ucare.R | 262 +++---- inst/doc/vignette_R2ucare.Rmd | 424 +++++------ inst/doc/vignette_R2ucare.html | 1390 +++++++++++++++++++-------------------- inst/extdata/geese.txt | 1256 +++++++++++++++++------------------ man/coef_mixtures.Rd | 64 - man/deviance_mixture.Rd | 68 - man/expval_table.Rd | 42 - man/gof_test.Rd | 50 - man/group_data.Rd | 60 - man/group_data_gen.Rd | 50 - man/ind_test_22.Rd | 50 - man/ind_test_rc.Rd | 50 - man/inv_logit_gen.Rd | 42 - man/marray.Rd | 86 +- man/multimarray.Rd | 70 - man/overall_CJS.Rd | 94 +- man/overall_JMV.Rd | 102 +- man/pool2K.Rd | 46 - man/pooling_ct.Rd | 48 - man/pooling_mixtures.Rd | 62 - man/read_headed.Rd | 60 - man/read_inp.Rd | 64 - man/reconstitution.Rd | 66 - man/repmat.Rd | 54 - man/test2cl.Rd | 102 +- man/test2ct.Rd | 102 +- man/test3Gsm.Rd | 78 +- man/test3Gsr.Rd | 78 +- man/test3Gwbwa.Rd | 78 +- man/test3sm.Rd | 98 +- man/test3sr.Rd | 98 +- man/testMitec.Rd | 82 +- man/testMltec.Rd | 82 +- man/ungroup_data.Rd | 60 - tests/testthat.R | 8 tests/testthat/test-test2cl.R | 36 - tests/testthat/test-test2ct.R | 36 - tests/testthat/test-test3Gsm.R | 25 tests/testthat/test-test3Gsr.R | 24 tests/testthat/test-test3Gwbwa.R | 24 tests/testthat/test-test3sm.R | 32 tests/testthat/test-test3sr.R | 32 tests/testthat/test-testMitec.R | 26 tests/testthat/test-testMltec.R | 26 vignettes/vignette_R2ucare.Rmd | 424 +++++------ 82 files changed, 5860 insertions(+), 5811 deletions(-)
Title: Fast and Beautiful Interactive Visualization for 'Markdown' and
'Shiny'
Description: Apache licensed alternative to 'Highcharter' which provides
functions for both fast and beautiful interactive visualization for 'Markdown'
and 'Shiny'.
Author: Mauricio Vargas Sepulveda [aut, cre, cph] ,
John Coene [aut],
Ariel Alvarado [ctb],
Sylvain Lesage [ctb],
Curran Kelleher [ctb],
Fernando Becerra [ctb],
Natural Earth [dtc],
R Consortium [fnd]
Maintainer: Mauricio Vargas Sepulveda <m.vargas.sepulveda@gmail.com>
Diff between d3po versions 0.5.5 dated 2023-06-19 and 1.0.1 dated 2025-11-23
d3po-0.5.5/d3po/R/map_ids.r |only d3po-0.5.5/d3po/R/template.R |only d3po-0.5.5/d3po/data/maps.rda |only d3po-0.5.5/d3po/data/pokemon.rda |only d3po-0.5.5/d3po/data/pokemon_network.rda |only d3po-0.5.5/d3po/inst/doc/d3po.R |only d3po-0.5.5/d3po/inst/doc/d3po.Rmd |only d3po-0.5.5/d3po/inst/doc/d3po.html |only d3po-0.5.5/d3po/inst/htmlwidgets/lib/topojson.min.js |only d3po-0.5.5/d3po/inst/rstudio |only d3po-0.5.5/d3po/inst/shinyexample |only d3po-0.5.5/d3po/man/d3po_template.Rd |only d3po-0.5.5/d3po/man/map_ids.Rd |only d3po-0.5.5/d3po/man/maps.Rd |only d3po-0.5.5/d3po/man/po_background.Rd |only d3po-0.5.5/d3po/man/po_legend.Rd |only d3po-0.5.5/d3po/man/po_title.Rd |only d3po-0.5.5/d3po/man/pokemon.Rd |only d3po-0.5.5/d3po/man/pokemon_network.Rd |only d3po-0.5.5/d3po/vignettes/d3po.Rmd |only d3po-1.0.1/d3po/DESCRIPTION | 28 d3po-1.0.1/d3po/MD5 | 132 -- d3po-1.0.1/d3po/NAMESPACE | 24 d3po-1.0.1/d3po/NEWS.md | 17 d3po-1.0.1/d3po/R/aes.R | 108 + d3po-1.0.1/d3po/R/api.R | 1141 ++++++++++++------- d3po-1.0.1/d3po/R/assertions.R | 4 d3po-1.0.1/d3po/R/d3po-package.R | 11 d3po-1.0.1/d3po/R/data.R | 116 - d3po-1.0.1/d3po/R/methods.R | 92 + d3po-1.0.1/d3po/R/shiny.R | 10 d3po-1.0.1/d3po/R/utils.R | 58 d3po-1.0.1/d3po/README.md | 145 +- d3po-1.0.1/d3po/build/vignette.rds |binary d3po-1.0.1/d3po/data/national.rda |only d3po-1.0.1/d3po/data/subnational.rda |only d3po-1.0.1/d3po/data/trade.rda |only d3po-1.0.1/d3po/inst/doc/examples.R |only d3po-1.0.1/d3po/inst/doc/examples.Rmd |only d3po-1.0.1/d3po/inst/doc/examples.html |only d3po-1.0.1/d3po/inst/htmlwidgets/d3po.js | 406 +++++- d3po-1.0.1/d3po/inst/htmlwidgets/d3po.yaml | 9 d3po-1.0.1/d3po/inst/htmlwidgets/lib/d3.min.js | 7 d3po-1.0.1/d3po/inst/htmlwidgets/lib/d3po.min.js | 16 d3po-1.0.1/d3po/man/d3po.Rd | 39 d3po-1.0.1/d3po/man/daes.Rd | 19 d3po-1.0.1/d3po/man/figures |only d3po-1.0.1/d3po/man/national.Rd |only d3po-1.0.1/d3po/man/po_area.Rd | 54 d3po-1.0.1/d3po/man/po_bar.Rd | 44 d3po-1.0.1/d3po/man/po_box.Rd | 29 d3po-1.0.1/d3po/man/po_donut.Rd | 42 d3po-1.0.1/d3po/man/po_download.Rd |only d3po-1.0.1/d3po/man/po_format.Rd |only d3po-1.0.1/d3po/man/po_geomap.Rd | 54 d3po-1.0.1/d3po/man/po_labels.Rd | 24 d3po-1.0.1/d3po/man/po_line.Rd | 44 d3po-1.0.1/d3po/man/po_network.Rd | 70 + d3po-1.0.1/d3po/man/po_pie.Rd | 40 d3po-1.0.1/d3po/man/po_scatter.Rd | 66 - d3po-1.0.1/d3po/man/po_theme.Rd |only d3po-1.0.1/d3po/man/po_tooltip.Rd |only d3po-1.0.1/d3po/man/po_treemap.Rd | 38 d3po-1.0.1/d3po/man/subnational.Rd |only d3po-1.0.1/d3po/man/trade.Rd |only d3po-1.0.1/d3po/vignettes/examples.Rmd |only 66 files changed, 1914 insertions(+), 973 deletions(-)
Title: Power and Sample Size for Health Researchers via Shiny
Description: Power and Sample Size for Health Researchers is a Shiny application that brings together a
series of functions related to sample size and power calculations for common analysis in the healthcare
field. There are functionalities to calculate the power, sample size to estimate or test hypotheses for means and
proportions (including test for correlated groups, equivalence, non-inferiority and superiority), association, correlations coefficients,
regression coefficients (linear, logistic, gamma, and Cox), linear mixed model,
Cronbach's alpha, interobserver agreement, intraclass correlation coefficients,
limit of agreement on Bland-Altman plots,
area under the curve, sensitivity and specificity incorporating the prevalence of disease.
You can also use the online version at <https://hcpa-unidade-bioestatistica.shinyapps.io/PSS_Health/>.
Author: Rogerio Boff Borges [aut, cre] ,
Guilherme Serpa Azambuja [aut] ,
Aline Castello Branco Mancuso [aut] ,
Vanessa Bielefeldt Leotti [aut] ,
Vania Naomi Hirakata [aut] ,
Suzi Alves Camey [aut] ,
Stela Maris de Jezus Castro [aut] ,
Gustavo Thomas [aut] , [...truncated...]
Maintainer: Rogerio Boff Borges <roborges@hcpa.edu.br>
Diff between PSS.Health versions 1.1.4 dated 2024-12-20 and 1.1.5 dated 2025-11-23
DESCRIPTION | 37 ++++++++++++------------- MD5 | 21 +++++++------- build/vignette.rds |binary inst/PSS.Health/R/modulo_anova_uma_via.R | 4 +- inst/PSS.Health/R/modulo_medidas_repetidas.R | 4 ++ inst/PSS.Health/R/modulo_regressao_logistica.R | 4 +- inst/PSS.Health/global.R | 3 ++ inst/PSS.Health/rsconnect |only inst/PSS.Health/server.R | 7 +++- inst/doc/Vignettes.Rmd | 2 + inst/doc/Vignettes.html | 6 ++++ vignettes/Vignettes.Rmd | 2 + 12 files changed, 56 insertions(+), 34 deletions(-)
Title: Consistent Contrast Coding for Factors
Description: Quickly set and summarize contrasts for factors prior to regression analyses. Intended comparisons, baseline conditions, and intercepts can be explicitly set and documented without the user needing to directly manipulate matrices. Reviews and introductions for contrast coding are available in Brehm and Alday (2022)<doi:10.1016/j.jml.2022.104334> and Schad et al. (2020)<doi:10.1016/j.jml.2019.104038>.
Author: Thomas Sostarics [aut, cre, cph]
Maintainer: Thomas Sostarics <tsostarics@gmail.com>
Diff between contrastable versions 1.0.2 dated 2024-10-01 and 1.1.0 dated 2025-11-23
contrastable-1.0.2/contrastable/man/dot-add_namespace.Rd |only contrastable-1.0.2/contrastable/man/dot-get_from_params.Rd |only contrastable-1.0.2/contrastable/man/dot-warn_if_nondefault.Rd |only contrastable-1.1.0/contrastable/DESCRIPTION | 14 - contrastable-1.1.0/contrastable/MD5 | 101 ++++---- contrastable-1.1.0/contrastable/NAMESPACE | 1 contrastable-1.1.0/contrastable/NEWS.md | 40 ++- contrastable-1.1.0/contrastable/R/contrasts_cumulative_split.R | 15 - contrastable-1.1.0/contrastable/R/contrasts_helmert.R | 4 contrastable-1.1.0/contrastable/R/contrasts_polynomial.R | 4 contrastable-1.1.0/contrastable/R/contrasts_scaled_sum.R | 2 contrastable-1.1.0/contrastable/R/contrasts_successive_differences.R | 4 contrastable-1.1.0/contrastable/R/contrasts_sum.R | 13 - contrastable-1.1.0/contrastable/R/contrasts_treatment.R | 2 contrastable-1.1.0/contrastable/R/droplevels_as_needed.R |only contrastable-1.1.0/contrastable/R/enlist_contrasts.R | 18 + contrastable-1.1.0/contrastable/R/glimpse_contrasts.R | 23 + contrastable-1.1.0/contrastable/R/is_centered.R | 4 contrastable-1.1.0/contrastable/R/is_orthogonal.R | 2 contrastable-1.1.0/contrastable/R/matrix_helpers.R | 4 contrastable-1.1.0/contrastable/R/print_contrasts.R |only contrastable-1.1.0/contrastable/R/set_contrasts.R | 10 contrastable-1.1.0/contrastable/R/use_contrast.R | 12 - contrastable-1.1.0/contrastable/R/zzz.R | 3 contrastable-1.1.0/contrastable/README.md | 32 +- contrastable-1.1.0/contrastable/build/vignette.rds |binary contrastable-1.1.0/contrastable/inst/CITATION | 8 contrastable-1.1.0/contrastable/inst/doc/contrastable.R |only contrastable-1.1.0/contrastable/inst/doc/contrastable.Rmd |only contrastable-1.1.0/contrastable/inst/doc/contrastable.html |only contrastable-1.1.0/contrastable/inst/doc/contrasts.R | 18 - contrastable-1.1.0/contrastable/inst/doc/contrasts.html | 28 +- contrastable-1.1.0/contrastable/inst/doc/warnings.R | 84 +++---- contrastable-1.1.0/contrastable/inst/doc/warnings.Rmd | 88 +++---- contrastable-1.1.0/contrastable/inst/doc/warnings.html | 118 ++++++---- contrastable-1.1.0/contrastable/man/backward_difference_code.Rd | 2 contrastable-1.1.0/contrastable/man/cumulative_split_code.Rd | 15 - contrastable-1.1.0/contrastable/man/dot-droplevels_as_needed.Rd |only contrastable-1.1.0/contrastable/man/enlist_contrasts.Rd | 16 + contrastable-1.1.0/contrastable/man/forward_difference_code.Rd | 2 contrastable-1.1.0/contrastable/man/glimpse_contrasts.Rd | 9 contrastable-1.1.0/contrastable/man/helmert_code.Rd | 2 contrastable-1.1.0/contrastable/man/is_centered.Rd | 5 contrastable-1.1.0/contrastable/man/is_orthogonal.Rd | 3 contrastable-1.1.0/contrastable/man/orth_polynomial_code.Rd | 2 contrastable-1.1.0/contrastable/man/print_contrasts.Rd |only contrastable-1.1.0/contrastable/man/raw_polynomial_code.Rd | 2 contrastable-1.1.0/contrastable/man/reverse_helmert_code.Rd | 2 contrastable-1.1.0/contrastable/man/scaled_sum_code.Rd | 2 contrastable-1.1.0/contrastable/man/set_contrasts.Rd | 15 - contrastable-1.1.0/contrastable/man/sum_code.Rd | 4 contrastable-1.1.0/contrastable/man/treatment_code.Rd | 2 contrastable-1.1.0/contrastable/man/use_contrasts.Rd | 13 - contrastable-1.1.0/contrastable/man/use_contrasts.hypr.Rd | 4 contrastable-1.1.0/contrastable/tests/testthat/test-droplevels_as_needed.R |only contrastable-1.1.0/contrastable/tests/testthat/test-print_contrasts.R |only contrastable-1.1.0/contrastable/vignettes/contrastable.Rmd |only contrastable-1.1.0/contrastable/vignettes/warnings.Rmd | 88 +++---- 58 files changed, 477 insertions(+), 363 deletions(-)
Title: Unnest Hierarchical Data Structures
Description: Fast flattening of hierarchical data structures (e.g. JSON, XML)
into data.frames with a flexible spec language.
Author: Vitalie Spinu [aut, cre]
Maintainer: Vitalie Spinu <spinuvit@gmail.com>
Diff between unnest versions 0.0.7 dated 2025-03-18 and 0.1 dated 2025-11-23
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ build/vignette.rds |binary src/Node.h | 2 +- src/utils.cpp | 4 ++-- 6 files changed, 15 insertions(+), 11 deletions(-)
Title: Convert Between R Objects and Geometric Structures
Description: Geometry shapes in 'R' are typically represented by matrices (points, lines), with more complex
shapes being lists of matrices (polygons). 'Geometries' will convert various 'R' objects into these shapes.
Conversion functions are available at both the 'R' level, and through 'Rcpp'.
Author: David Cooley [aut, cre]
Maintainer: David Cooley <david.cooley.au@gmail.com>
Diff between geometries versions 0.2.4 dated 2024-01-15 and 0.2.5 dated 2025-11-23
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 3 +++ build/vignette.rds |binary inst/doc/geometries.R | 2 +- inst/doc/geometries.html | 6 +++--- inst/include/geometries/utils/rleid/rleid.hpp | 2 +- 7 files changed, 19 insertions(+), 16 deletions(-)
Title: Accurate Estimation of Influenza Epidemics using Google Search
Data
Description: Augmented Regression with General Online data (ARGO) for accurate estimation of influenza epidemics in United States on national level, regional level and state level. It replicates the method introduced in paper Yang, S., Santillana, M. and Kou, S.C. (2015) <doi:10.1073/pnas.1515373112>; Ning, S., Yang, S. and Kou, S.C. (2019) <doi:10.1038/s41598-019-41559-6>; Yang, S., Ning, S. and Kou, S.C. (2021) <doi:10.1038/s41598-021-83084-5>.
Author: Shaoyang Ning [aut],
Shihao Yang [aut, cre],
S. C. Kou [aut]
Maintainer: Shihao Yang <shihao.yang@isye.gatech.edu>
Diff between argo versions 3.0.2 dated 2023-05-24 and 3.0.3 dated 2025-11-23
DESCRIPTION | 22 +++++++++++++++++----- MD5 | 14 +++++++------- R/dataparsing.R | 11 ++++------- R/main.R | 2 +- man/argo2_main.Rd | 2 +- man/load_data.Rd | 7 ++----- man/load_reg_data.Rd | 2 +- man/parse_gt_weekly.Rd | 2 +- 8 files changed, 34 insertions(+), 28 deletions(-)
Title: Modified Poisson, Logistic and Least-Squares Regressions for
Binary Outcome and Their Generalizations
Description: Modified Poisson, logistic and least-squares regression analyses for binary outcomes of Zou (2004) <doi:10.1093/aje/kwh090>, Noma (2025)<Forthcoming>, and Cheung (2007) <doi:10.1093/aje/kwm223> have been standard multivariate analysis methods to estimate risk ratio and risk difference in clinical and epidemiological studies. This R package involves an easy-to-handle function to implement these analyses by simple commands. Missing data analysis tools (multiple imputation) are also involved. In addition, recent studies have shown the ordinary robust variance estimator possibly has serious bias under small or moderate sample size situations for these methods. This package also provides computational tools to calculate alternative accurate confidence intervals.
Author: Hisashi Noma [aut, cre]
Maintainer: Hisashi Noma <noma@ism.ac.jp>
Diff between rqlm versions 2.3-1 dated 2025-01-12 and 3.1-1 dated 2025-11-23
DESCRIPTION | 19 +++--- MD5 | 34 ++++++----- NAMESPACE | 6 +- NEWS.md | 4 + R/bsci.ls.r | 4 - R/bsci.pois.r | 4 - R/coeff.r | 150 ++++++++++++++++++++++++++++++---------------------- R/qesci.ls.r | 4 - R/qesci.pois.r | 4 - R/qlogist.r |only R/rqlm.r | 138 +++++++++++++++++++++++++++++++++++++++++++++++ man/bsci.ls.Rd | 2 man/bsci.pois.Rd | 2 man/coeff.Rd | 14 ++++ man/qesci.ls.Rd | 2 man/qesci.pois.Rd | 2 man/qlogist.Rd |only man/rqlm-package.Rd | 12 +++- man/rqlm.Rd | 14 +++- 19 files changed, 308 insertions(+), 107 deletions(-)
Title: Simulation of Chromosomal Regions Shared by Family Members
Description: Simulation of segments shared identical-by-descent (IBD) by
pedigree members. Using sex specific recombination rates along the
human genome (Halldorsson et al. (2019)
<doi:10.1126/science.aau1043>), phased chromosomes are simulated for
all pedigree members. Applications include calculation of realised
relatedness coefficients and IBD segment distributions. 'ibdsim2' is
part of the 'pedsuite' collection of packages for pedigree analysis.
A detailed presentation of the 'pedsuite', including a separate
chapter on 'ibdsim2', is available in the book 'Pedigree analysis in
R' (Vigeland, 2021, ISBN:9780128244302). A 'Shiny' app for visualising
and comparing IBD distributions is available at
<https://magnusdv.shinyapps.io/ibdsim2-shiny/>.
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between ibdsim2 versions 2.3.1 dated 2025-08-22 and 2.3.2 dated 2025-11-23
DESCRIPTION | 8 +-- MD5 | 22 +++++----- NEWS.md | 9 ++++ R/data.R | 12 ++--- R/haploDraw.R | 8 ++- R/ibdsim.R | 86 +++++++++++++++++++++++------------------ R/plotSegmentDistribution.R | 26 ++++++++---- inst/shiny/R/utils.R | 4 + inst/shiny/app.R | 4 - man/ibdsim.Rd | 62 ++++++++++++++--------------- man/legacy_decode19.Rd | 12 ++--- man/plotSegmentDistribution.Rd | 4 + 12 files changed, 149 insertions(+), 108 deletions(-)
Title: Easy Installation of the 'pedsuite' Packages for Pedigree
Analysis
Description: The 'pedsuite' is a collection of packages for pedigree
analysis, covering applications in forensic genetics, medical genetics
and more. A detailed presentation of the 'pedsuite' is given in the
book 'Pedigree Analysis in R' (Vigeland, 2021, ISBN: 9780128244302).
Author: Magnus Dehli Vigeland [aut, cre] ,
Thore Egeland [aut]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between pedsuite versions 1.3.1 dated 2024-09-06 and 1.4.0 dated 2025-11-23
DESCRIPTION | 18 +++++++++--------- MD5 | 17 +++++++++-------- NAMESPACE | 2 ++ NEWS.md | 5 +++++ R/pedsuite-package.R | 2 ++ R/utils.R |only README.md | 7 +++++-- build/vignette.rds |binary inst/doc/pedsuite.R | 6 +++--- inst/doc/pedsuite.html | 27 ++++++++++++++------------- 10 files changed, 49 insertions(+), 35 deletions(-)
Title: Eigendecomposition, Singular-Values and the Power Method
Description: For a data matrix with m rows and n columns (m>=n), the power
method is used to compute, simultaneously, the eigendecomposition
of a square symmetric matrix. This result is used to obtain the
singular value decomposition (SVD) and the principal component
analysis (PCA) results. Compared to the classical SVD method,
the first r singular values can be computed.
Author: Doulaye Dembele [aut, cre]
Maintainer: Doulaye Dembele <doulaye@igbmc.fr>
This is a re-admission after prior archival of version 1.0-0 dated 2025-07-17
Diff between psvd versions 1.0-0 dated 2025-07-17 and 1.1-0 dated 2025-11-23
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/calcPCA.R | 9 +++++---- R/calcSVD.R | 6 +++--- man/psvd-package.Rd | 3 ++- 5 files changed, 18 insertions(+), 16 deletions(-)
Title: Privacy-Preserving Data Anonymization
Description: Tools for anonymizing sensitive patient and research data. Helps
protect privacy while keeping data useful for analysis. Anonymizes IDs,
names, dates, locations, and ages while maintaining referential integrity.
Methods based on: Sweeney (2002) <doi:10.1142/S0218488502001648>,
Dwork et al. (2006) <doi:10.1007/11681878_14>,
El Emam et al. (2011) <doi:10.1371/journal.pone.0028071>,
Fung et al. (2010) <doi:10.1145/1749603.1749605>.
Author: Vikrant Dev Rathore [aut, cre]
Maintainer: Vikrant Dev Rathore <rathore.vikrant@gmail.com>
Diff between privacyR versions 1.0.0 dated 2025-11-17 and 1.0.1 dated 2025-11-23
DESCRIPTION | 8 ++--- MD5 | 10 +++--- NEWS.md | 16 ++++++++++ R/generate_short_uuid.R | 73 ++++++++++++++++++++++++++++++++++++++---------- README.md | 2 + inst/doc/privacyR.html | 4 +- 6 files changed, 88 insertions(+), 25 deletions(-)
Title: A Comprehensive Collection of Neuroscience and Brain-Related
Datasets
Description: Offers a rich and diverse collection of datasets focused on the brain, nervous system, and related disorders.
The package includes clinical, experimental, neuroimaging, behavioral, cognitive, and simulated data on conditions such as
Parkinson's disease, Alzheimer's disease, dementia, epilepsy, schizophrenia, autism spectrum disorder, attention deficit, hyperactivity disorder,
Tourette's syndrome, traumatic brain injury, gliomas, migraines, headaches, sleep disorders, concussions, encephalitis,
subarachnoid hemorrhage, and mental health conditions. Datasets cover structural and functional brain data, cross-sectional and longitudinal
MRI imaging studies, neurotransmission, gene expression, cognitive performance, intelligence metrics, sleep deprivation effects, treatment outcomes,
brain-body relationships across species, neurological injury patterns, and acupuncture interventions. Data sources include peer-reviewed studies,
clinical trials, military health records, sports injury databases [...truncated...]
Author: Renzo Caceres Rossi [aut, cre]
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>
Diff between NeuroDataSets versions 0.2.0 dated 2025-09-07 and 0.3.0 dated 2025-11-23
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NeuroDataSets-0.2.0/NeuroDataSets/tests/testthat/test-alzheimers_biomarkers_tbl_df.R |only NeuroDataSets-0.2.0/NeuroDataSets/tests/testthat/test-dopamine_schizophrenia_tbl_df.R |only NeuroDataSets-0.2.0/NeuroDataSets/tests/testthat/test-guineapig_neurotransmission_df.R |only NeuroDataSets-0.2.0/NeuroDataSets/tests/testthat/test-neurocognitive_psychiatric_df.R |only NeuroDataSets-0.2.0/NeuroDataSets/tests/testthat/test-oasis_dementia_mri_df.R |only NeuroDataSets-0.2.0/NeuroDataSets/tests/testthat/test-white_matter_patterns_tbl_df.R |only NeuroDataSets-0.3.0/NeuroDataSets/DESCRIPTION | 18 NeuroDataSets-0.3.0/NeuroDataSets/MD5 | 239 +- NeuroDataSets-0.3.0/NeuroDataSets/NAMESPACE | 34 NeuroDataSets-0.3.0/NeuroDataSets/NEWS.md | 45 NeuroDataSets-0.3.0/NeuroDataSets/R/data-documentation.R | 887 ++++++++-- NeuroDataSets-0.3.0/NeuroDataSets/R/neurodatasets-package.R | 4 NeuroDataSets-0.3.0/NeuroDataSets/R/view_datasets_NeuroDataSets.R | 2 NeuroDataSets-0.3.0/NeuroDataSets/README.md | 29 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|only NeuroDataSets-0.3.0/NeuroDataSets/data/adolescent_mental_health_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/alzheimer_smoking_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/bilingual_brains_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/blood_brain_barrier_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/brain_litter_mammals_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/brain_size_iq_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/brain_string_players_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/brainexpression_df.rda |only NeuroDataSets-0.3.0/NeuroDataSets/data/brains_cognitive_matrix.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/brainvolume_df.rda |only NeuroDataSets-0.3.0/NeuroDataSets/data/cerebellar_age_df.rda |only NeuroDataSets-0.3.0/NeuroDataSets/data/chimpbrains_df.rda |only NeuroDataSets-0.3.0/NeuroDataSets/data/cocaine_dopamine_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/dementia_df.rda |only NeuroDataSets-0.3.0/NeuroDataSets/data/encephalitis_df.rda |only NeuroDataSets-0.3.0/NeuroDataSets/data/epilepsy_RCT_tbl_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/epilepsy_drug_qol_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/epilepsy_drug_trial_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/gm_expected_patterns_tbl_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/guineapig_neuro_df.rda |only NeuroDataSets-0.3.0/NeuroDataSets/data/hippocampus_lesions_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/iq_country_tbl_df.rda |only NeuroDataSets-0.3.0/NeuroDataSets/data/mammals_brain_body_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/markers_brain_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/markers_human_brain_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/markers_mouse_brain_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/migraine_treatment_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/migraines_df.rda |only NeuroDataSets-0.3.0/NeuroDataSets/data/migrane_dose_df.rda |only NeuroDataSets-0.3.0/NeuroDataSets/data/neanderthal_brains_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/neuro_pointprocess_matrix.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/neurodeg_dose_df.rda |only NeuroDataSets-0.3.0/NeuroDataSets/data/nfl_concussions_tbl_df.rda |only NeuroDataSets-0.3.0/NeuroDataSets/data/parkinsons_dopamine_list.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/pediatric_glioma_tbl_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/psych_neurocog_df.rda |only NeuroDataSets-0.3.0/NeuroDataSets/data/sleep_deprivation_tbl_df.rda |only NeuroDataSets-0.3.0/NeuroDataSets/data/sleep_disorder_df.rda |only NeuroDataSets-0.3.0/NeuroDataSets/data/sleep_performance_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/subcortical_patterns_tbl_df.rda |binary NeuroDataSets-0.3.0/NeuroDataSets/data/tourette_ADHD_df.rda |only NeuroDataSets-0.3.0/NeuroDataSets/inst/CITATION | 2 NeuroDataSets-0.3.0/NeuroDataSets/inst/doc/introduction_to_neurodatasets.R | 2 NeuroDataSets-0.3.0/NeuroDataSets/inst/doc/introduction_to_neurodatasets.Rmd | 16 NeuroDataSets-0.3.0/NeuroDataSets/inst/doc/introduction_to_neurodatasets.html | 101 - NeuroDataSets-0.3.0/NeuroDataSets/inst/licenses/LICENSES_DETAILS.md | 96 - NeuroDataSets-0.3.0/NeuroDataSets/man/ADHD_df.Rd |only NeuroDataSets-0.3.0/NeuroDataSets/man/AD_biomarkers_tbl_df.Rd |only NeuroDataSets-0.3.0/NeuroDataSets/man/ASD_risks_tbl_df.Rd |only NeuroDataSets-0.3.0/NeuroDataSets/man/DA_schizophrenia_tbl_df.Rd |only NeuroDataSets-0.3.0/NeuroDataSets/man/NeuroDataSets.Rd | 2 NeuroDataSets-0.3.0/NeuroDataSets/man/OASIS_cross_tbl_df.Rd |only NeuroDataSets-0.3.0/NeuroDataSets/man/OASIS_long_tbl_df.Rd |only NeuroDataSets-0.3.0/NeuroDataSets/man/SAHemorrhage_df.Rd |only NeuroDataSets-0.3.0/NeuroDataSets/man/TBI_age_tbl_df.Rd |only NeuroDataSets-0.3.0/NeuroDataSets/man/TBI_military_tbl_df.Rd |only 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NeuroDataSets-0.3.0/NeuroDataSets/man/psych_neurocog_df.Rd |only NeuroDataSets-0.3.0/NeuroDataSets/man/sleep_deprivation_tbl_df.Rd |only NeuroDataSets-0.3.0/NeuroDataSets/man/sleep_disorder_df.Rd |only NeuroDataSets-0.3.0/NeuroDataSets/man/tourette_ADHD_df.Rd |only NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-ADHD_df.R |only NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-AD_biomarkers_tbl_df.R |only NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-ASD_risks_tbl_df.R |only NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-DA_schizophrenia_tbl_df.R |only NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-OASIS_cross_tbl_df.R |only NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-OASIS_long_tbl_df.R |only NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-SAHemorrhage_df.R |only NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-TBI_age_tbl_df.R |only NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-TBI_military_tbl_df.R |only NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-TBI_steroids_df.R |only NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-WMpatterns_tbl_df.R |only NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-aba_phenotype_data_df.R | 2 NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-ability_intelligence_list.R | 2 NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-acupuncture_df.R |only NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-adolescent_mental_health_df.R | 2 NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-alzheimer_smoking_df.R | 2 NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-bilingual_brains_df.R | 2 NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-blood_brain_barrier_df.R | 2 NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-brain_litter_mammals_df.R | 2 NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-brain_size_iq_df.R | 2 NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-brain_string_players_df.R | 2 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NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-parkinsons_dopamine_list.R | 2 NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-pediatric_glioma_tbl_df.R | 2 NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-psych_neurocog_df.R |only NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-sleep_deprivation_tbl_df.R |only NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-sleep_disorder_df.R |only NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-sleep_performance_df.R | 2 NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-subcortical_patterns_tbl_df.R | 2 NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-tourette_ADHD_df.R |only NeuroDataSets-0.3.0/NeuroDataSets/tests/testthat/test-view_datasets_NeuroDataSets.R | 36 NeuroDataSets-0.3.0/NeuroDataSets/vignettes/introduction_to_neurodatasets.Rmd | 16 171 files changed, 1286 insertions(+), 295 deletions(-)
Title: Advanced Analysis of Longitudinal Data Using the Concordance
Correlation Coefficient
Description: Methods for assessing agreement between repeated
measurements obtained by two or more methods using the longitudinal
concordance correlation coefficient (LCC). Polynomial mixed-effects
models (via 'nlme') describe how concordance, Pearson correlation
and accuracy evolve over time. Functions are provided for model
fitting, diagnostic plots, extraction of summaries, and non-parametric
bootstrap confidence intervals (including parallel computation),
following Oliveira et al. (2018) <doi:10.1007/s13253-018-0321-1>.
Author: Thiago de Paula Oliveira [aut, cre] ,
Rafael de Andrade Moral [aut] ,
Silvio Sandoval Zocchi [ctb] ,
Clarice Garcia Borges Demetrio [ctb] ,
John Hinde [aut]
Maintainer: Thiago de Paula Oliveira <thiago.paula.oliveira@alumni.usp.br>
This is a re-admission after prior archival of version 1.1.4 dated 2022-08-25
Diff between lcc versions 1.1.4 dated 2022-08-25 and 3.2.2 dated 2025-11-23
lcc-1.1.4/lcc/R/ciBuilder.R |only lcc-1.1.4/lcc/R/ciCompute.R |only lcc-1.1.4/lcc/R/dataBuilder.R |only lcc-1.1.4/lcc/R/fittedBuilder.R |only lcc-1.1.4/lcc/R/getDelta.R |only lcc-1.1.4/lcc/R/init.R |only lcc-1.1.4/lcc/R/laBuilder.R |only lcc-1.1.4/lcc/R/laWrapper.R |only lcc-1.1.4/lcc/R/lcc.R |only lcc-1.1.4/lcc/R/lccBootstrap.R |only lcc-1.1.4/lcc/R/lccBuilder.R |only lcc-1.1.4/lcc/R/lccModel.R |only lcc-1.1.4/lcc/R/lccSummary.R |only lcc-1.1.4/lcc/R/lccWrapper.R |only lcc-1.1.4/lcc/R/lcc_internal.R |only lcc-1.1.4/lcc/R/lcc_intervals.R |only lcc-1.1.4/lcc/R/lpcBuilder.R |only lcc-1.1.4/lcc/R/lpcWrapper.R |only lcc-1.1.4/lcc/R/methods.R |only lcc-1.1.4/lcc/R/plotBuilder_la.R |only lcc-1.1.4/lcc/R/plotBuilder_lcc.R |only lcc-1.1.4/lcc/R/plotBuilder_lpc.R |only lcc-1.1.4/lcc/R/plotControl.R |only lcc-1.1.4/lcc/R/plot_la.R |only lcc-1.1.4/lcc/R/plot_lpc.R |only lcc-1.1.4/lcc/R/plotmethod_lcc.R |only lcc-1.1.4/lcc/R/time_lcc.R |only lcc-1.1.4/lcc/man/dataBootstrap.Rd |only lcc-1.1.4/lcc/man/laBootstrap.Rd |only lcc-1.1.4/lcc/man/laWrapper.Rd |only lcc-1.1.4/lcc/man/lccBootstrap.Rd |only lcc-1.1.4/lcc/man/lccWrapper.Rd |only lcc-1.1.4/lcc/man/lpcBootstrap.Rd |only lcc-1.1.4/lcc/man/lpcWrapper.Rd |only lcc-1.1.4/lcc/man/plot_lcc.Rd |only lcc-3.2.2/lcc/DESCRIPTION | 57 +- lcc-3.2.2/lcc/MD5 | 169 ++---- lcc-3.2.2/lcc/NAMESPACE | 174 +++--- lcc-3.2.2/lcc/R/CCC.R | 82 +- lcc-3.2.2/lcc/R/bootstrap_longitudinal.R |only lcc-3.2.2/lcc/R/confidence_intervals.R |only lcc-3.2.2/lcc/R/data_preparation.R |only lcc-3.2.2/lcc/R/input_validation.R |only lcc-3.2.2/lcc/R/lcc_main.R |only lcc-3.2.2/lcc/R/lcc_workflow.R |only lcc-3.2.2/lcc/R/longitudinal_metrics.R |only lcc-3.2.2/lcc/R/model_fitting.R |only lcc-3.2.2/lcc/R/plot_builders.R |only lcc-3.2.2/lcc/R/plot_controls.R |only lcc-3.2.2/lcc/R/plot_lcc.R | 268 ++++++--- lcc-3.2.2/lcc/R/plot_metrics.R |only lcc-3.2.2/lcc/R/s3_methods.R |only lcc-3.2.2/lcc/R/summary_outputs.R |only lcc-3.2.2/lcc/R/time_sequence.R |only lcc-3.2.2/lcc/R/variance_components.R |only lcc-3.2.2/lcc/R/zzz.R |only lcc-3.2.2/lcc/README.md |only lcc-3.2.2/lcc/inst/CITATION | 29 - lcc-3.2.2/lcc/man/AIC.lcc.Rd | 118 ++-- lcc-3.2.2/lcc/man/CCC.Rd | 44 - lcc-3.2.2/lcc/man/CCC_lin.Rd | 31 - lcc-3.2.2/lcc/man/Pearson.Rd | 29 - lcc-3.2.2/lcc/man/anova.lcc.Rd | 97 +-- lcc-3.2.2/lcc/man/bootstrapSamples.Rd | 33 - lcc-3.2.2/lcc/man/ciBuilder.Rd | 31 - lcc-3.2.2/lcc/man/ciCompute.Rd | 36 - lcc-3.2.2/lcc/man/coef.lcc.Rd | 7 lcc-3.2.2/lcc/man/dataBuilder.Rd | 31 - lcc-3.2.2/lcc/man/dot-compute_LA.Rd |only lcc-3.2.2/lcc/man/dot-compute_LCC.Rd |only lcc-3.2.2/lcc/man/dot-compute_LPC.Rd |only lcc-3.2.2/lcc/man/dot-lcc_default_theme.Rd |only lcc-3.2.2/lcc/man/dot-precompute_longitudinal.Rd |only lcc-3.2.2/lcc/man/figures/logo.svg | 540 +++++++++---------- lcc-3.2.2/lcc/man/fitted.lcc.Rd | 101 +-- lcc-3.2.2/lcc/man/fittedBuilder.Rd | 31 - lcc-3.2.2/lcc/man/formatColumn.Rd |only lcc-3.2.2/lcc/man/getDelta.Rd | 35 - lcc-3.2.2/lcc/man/getVarCov.lcc.Rd | 93 +-- lcc-3.2.2/lcc/man/hue.Rd | 134 ++-- lcc-3.2.2/lcc/man/init.Rd | 36 - lcc-3.2.2/lcc/man/is.lcc.Rd | 41 - lcc-3.2.2/lcc/man/laBuilder.Rd | 15 lcc-3.2.2/lcc/man/lcc.Rd | 646 ++++++++++++----------- lcc-3.2.2/lcc/man/lccBuilder.Rd | 30 - lcc-3.2.2/lcc/man/lccInternal.Rd | 37 - lcc-3.2.2/lcc/man/lccModel.Rd | 55 - lcc-3.2.2/lcc/man/lccPlot.Rd | 189 ++---- lcc-3.2.2/lcc/man/lccSummary.Rd | 34 - lcc-3.2.2/lcc/man/lcc_intervals.Rd | 31 - lcc-3.2.2/lcc/man/logLik.lcc.Rd | 9 lcc-3.2.2/lcc/man/lpcBuilder.Rd | 16 lcc-3.2.2/lcc/man/plot.lcc.Rd | 198 +++---- lcc-3.2.2/lcc/man/plotBuilder_la.Rd | 37 - lcc-3.2.2/lcc/man/plotBuilder_lcc.Rd | 56 + lcc-3.2.2/lcc/man/plotBuilder_lpc.Rd | 38 - lcc-3.2.2/lcc/man/plotControl.Rd | 106 +-- lcc-3.2.2/lcc/man/plot_la.Rd | 30 - lcc-3.2.2/lcc/man/plot_lpc.Rd | 26 lcc-3.2.2/lcc/man/print.anova.lcc.Rd | 9 lcc-3.2.2/lcc/man/print.lcc.Rd | 83 +- lcc-3.2.2/lcc/man/print.summary.lcc.Rd | 91 +-- lcc-3.2.2/lcc/man/ranef.lcc.Rd | 35 - lcc-3.2.2/lcc/man/rename.vars.Rd | 2 lcc-3.2.2/lcc/man/residuals.lcc.Rd | 54 - lcc-3.2.2/lcc/man/simulated_hue.Rd | 76 +- lcc-3.2.2/lcc/man/simulated_hue_block.Rd | 82 +- lcc-3.2.2/lcc/man/summary.lcc.Rd | 142 ++--- lcc-3.2.2/lcc/man/time_lcc.Rd | 72 +- lcc-3.2.2/lcc/man/vcov.lcc.Rd | 35 - lcc-3.2.2/lcc/tests |only 111 files changed, 2217 insertions(+), 2264 deletions(-)
Title: Make Optimal Financial Decisions
Description: Make optimal decisions for your personal or
household finances. Use tools and methods that are selected carefully
to align with academic consensus, bridging the gap between theoretical
knowledge and practical application. They help you find
your own personalized optimal discretionary spending or
optimal asset allocation, and prepare you for retirement
or financial independence.
The optimal solution to this problems is extremely complex,
and we only have a single lifetime to get it right.
Fortunately, we now have the user-friendly tools implemented,
that integrate life-cycle models
with single-period net-worth mean-variance optimization models.
Those tools can be used by anyone who wants to see
what highly-personalized optimal decisions can look like.
For more details see:
Idzorek T., Kaplan P. (2024, ISBN:9781952927379),
Haghani V., White J. (2023, ISBN:9781119747918).
Author: Kamil Wais [aut, cre, cph, fnd] ,
Olesia Wais [aut]
Maintainer: Kamil Wais <kamil.wais@gmail.com>
Diff between R4GoodPersonalFinances versions 1.1.0 dated 2025-07-29 and 1.2.0 dated 2025-11-23
DESCRIPTION | 8 MD5 | 155 - NAMESPACE | 1 NEWS.md | 200 + R/calc_discretionary_spending.R | 23 R/calc_gompertz.R | 4 R/calc_life_expectancy.R | 17 R/calc_optimal_portfolio.R | 32 R/plot_expected_spending.R | 4 R/plot_optimal_portfolio.R | 7 R/simulate_scenario.R | 11 R/simulate_single_scenario.R | 38 R/sysdata.rda |binary build/partial.rdb |binary inst/CITATION | 2 inst/WORDLIST | 3 man/cache.Rd | 6 man/calc_gompertz_mode.Rd |only man/calc_optimal_asset_allocation.Rd | 2 man/plot_expected_allocation.Rd | 2 man/plot_expected_capital.Rd | 2 man/plot_future_income.Rd | 2 man/plot_future_spending.Rd | 2 man/plot_optimal_portfolio.Rd | 2 man/plot_scenarios.Rd | 2 man/run_app.Rd | 2 man/simulate_scenario.Rd | 2 man/simulate_scenarios.Rd | 2 tests/testthat/_snaps/calc_portfolio.md | 38 tests/testthat/_snaps/create_portfolio_template.md | 144 - tests/testthat/_snaps/generate_random_returns.md | 40 tests/testthat/_snaps/plot_expected_allocation/ea-mc.svg | 11 tests/testthat/_snaps/plot_expected_allocation/plot1.svg | 11 tests/testthat/_snaps/plot_expected_allocation/plot2.svg | 11 tests/testthat/_snaps/plot_expected_allocation/plot3.svg | 11 tests/testthat/_snaps/plot_expected_capital/plot1.svg | 17 tests/testthat/_snaps/plot_future_income/plot1.svg | 1 tests/testthat/_snaps/plot_future_income/plot2.svg | 1 tests/testthat/_snaps/plot_future_saving_rates/fsrmc-mean.svg | 1 tests/testthat/_snaps/plot_future_saving_rates/fsrmc-median.svg | 1 tests/testthat/_snaps/plot_future_saving_rates/plot-fsr.svg | 1 tests/testthat/_snaps/plot_future_saving_rates/plot-fsrmc.svg | 1 tests/testthat/_snaps/plot_future_spending/plot1.svg | 123 - tests/testthat/_snaps/plot_future_spending/plot2.svg | 1 tests/testthat/_snaps/plot_future_spending/plot3.svg | 15 tests/testthat/_snaps/plot_future_spending/plot4.svg | 131 - tests/testthat/_snaps/plot_future_spending/plot5.svg | 1 tests/testthat/_snaps/plot_future_spending/plot6.svg | 41 tests/testthat/_snaps/plot_future_spending/plot7.svg | 15 tests/testthat/_snaps/plot_life_expectancy/plot-leh.svg | 3 tests/testthat/_snaps/plot_life_expectancy/plot-lep.svg | 21 tests/testthat/_snaps/plot_optimal_portfolio/plot1.svg | 17 tests/testthat/_snaps/plot_purchasing_power/pp-10years.svg | 1 tests/testthat/_snaps/plot_purchasing_power/pp-inflation.svg | 1 tests/testthat/_snaps/plot_purchasing_power/pp-multiple.svg | 1 tests/testthat/_snaps/plot_purchasing_power/pp-overlapping.svg | 1 tests/testthat/_snaps/plot_risk_adjusted_returns/rar-craa-1.svg | 21 tests/testthat/_snaps/plot_risk_adjusted_returns/rar-craa-2.svg | 21 tests/testthat/_snaps/plot_risk_adjusted_returns/rar-craa-3.svg | 21 tests/testthat/_snaps/plot_risk_adjusted_returns/rar-ra2.svg | 13 tests/testthat/_snaps/plot_risk_adjusted_returns/rar-ra3.svg | 13 tests/testthat/_snaps/plot_scenarios |only tests/testthat/_snaps/plot_survival/plot1.svg | 1 tests/testthat/_snaps/simulate_scenario |only tests/testthat/_snaps/simulate_single_scenario.md | 1066 +++++----- tests/testthat/test-calc_gompertz.R | 11 tests/testthat/test-plot_expected_spending.R | 3 tests/testthat/test-plot_future_income.R | 3 tests/testthat/test-plot_future_saving_rates.R | 6 tests/testthat/test-plot_future_spending.R | 5 tests/testthat/test-plot_life_expectancy.R | 6 tests/testthat/test-plot_optimal_portfolio.R | 5 tests/testthat/test-plot_purchasing_power.R | 14 tests/testthat/test-plot_retirement_ruin.R | 3 tests/testthat/test-plot_risk_adjusted_returns.R | 6 tests/testthat/test-plot_scenarios.R | 2 tests/testthat/test-plot_survival.R | 3 tests/testthat/test-simulate_scenario.R | 71 78 files changed, 1358 insertions(+), 1128 deletions(-)
More information about R4GoodPersonalFinances at CRAN
Permanent link
Title: Representation for Glycan Compositions and Structures
Description: Computational representations of glycan compositions and structures,
including details such as linkages, anomers, and substituents. Supports varying
levels of monosaccharide specificity (e.g., "Hex" or "Gal") and ambiguous linkages.
Provides robust parsing and generation of IUPAC-condensed structure strings.
Optimized for vectorized operations on glycan structures, with efficient handling
of duplications. As the cornerstone of the glycoverse ecosystem, this package
delivers the foundational data structures that power glycomics and glycoproteomics
analysis workflows.
Author: Bin Fu [aut, cre, cph]
Maintainer: Bin Fu <23110220018@m.fudan.edu.cn>
Diff between glyrepr versions 0.8.0 dated 2025-11-09 and 0.9.0 dated 2025-11-23
glyrepr-0.8.0/glyrepr/R/get-structure-level.R |only glyrepr-0.8.0/glyrepr/tests/testthat/test-get-structure-level.R |only glyrepr-0.9.0/glyrepr/DESCRIPTION | 6 glyrepr-0.9.0/glyrepr/MD5 | 48 + glyrepr-0.9.0/glyrepr/NAMESPACE | 1 glyrepr-0.9.0/glyrepr/NEWS.md | 16 glyrepr-0.9.0/glyrepr/R/composition.R | 245 +++------- glyrepr-0.9.0/glyrepr/R/count-mono.R | 51 +- glyrepr-0.9.0/glyrepr/R/linkage.R | 6 glyrepr-0.9.0/glyrepr/R/mono-type.R | 73 ++ glyrepr-0.9.0/glyrepr/R/monosaccharide.R | 49 -- glyrepr-0.9.0/glyrepr/R/structure-level.R |only glyrepr-0.9.0/glyrepr/inst/doc/glycan-graph.html | 6 glyrepr-0.9.0/glyrepr/inst/doc/glyrepr.R | 7 glyrepr-0.9.0/glyrepr/inst/doc/glyrepr.Rmd | 11 glyrepr-0.9.0/glyrepr/inst/doc/glyrepr.html | 155 +++--- glyrepr-0.9.0/glyrepr/inst/doc/smap.html | 12 glyrepr-0.9.0/glyrepr/man/count_mono.Rd | 21 glyrepr-0.9.0/glyrepr/man/get_mono_type.Rd | 17 glyrepr-0.9.0/glyrepr/man/get_structure_level.Rd | 5 glyrepr-0.9.0/glyrepr/man/reduce_structure_level.Rd |only glyrepr-0.9.0/glyrepr/tests/testthat/_snaps/structure-level.md |only glyrepr-0.9.0/glyrepr/tests/testthat/test-composition.R | 14 glyrepr-0.9.0/glyrepr/tests/testthat/test-count-mono.R | 24 glyrepr-0.9.0/glyrepr/tests/testthat/test-linkage.R | 65 +- glyrepr-0.9.0/glyrepr/tests/testthat/test-mono-type.R | 28 - glyrepr-0.9.0/glyrepr/tests/testthat/test-structure-level.R |only glyrepr-0.9.0/glyrepr/vignettes/glyrepr.Rmd | 11 28 files changed, 487 insertions(+), 384 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-06-27 0.2.1
2024-01-09 0.1.1
Title: Bayesian Multidimensional Scaling and Choice of Dimension
Description: Bayesian approach to multidimensional scaling. The package consists of implementations of the methods of Oh and Raftery (2001) <doi:10.1198/016214501753208690>.
Author: Man-Suk Oh [aut, cre],
Eun-Kyung Lee [aut]
Maintainer: Man-Suk Oh <msoh@ewha.ac.kr>
Diff between bayMDS versions 2.0 dated 2022-11-07 and 2.1 dated 2025-11-23
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- src/Makevars | 2 +- src/Makevars.win | 3 ++- src/bmdsMCMC.cpp | 2 +- 5 files changed, 12 insertions(+), 11 deletions(-)
Title: Trust, but Verify
Description: Declarative template-based framework for verifying that objects
meet structural requirements, and auto-composing error messages when they do
not.
Author: Brodie Gaslam [aut, cre],
Paxdiablo [cph] ,
R Core Team [cph] ,
Michael Chirico [ctb]
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>
Diff between vetr versions 0.2.18 dated 2024-06-21 and 0.2.19 dated 2025-11-23
vetr-0.2.18/vetr/man/type_of.Rd |only vetr-0.2.19/vetr/DESCRIPTION | 21 vetr-0.2.19/vetr/MD5 | 82 +- vetr-0.2.19/vetr/NEWS.md | 7 vetr-0.2.19/vetr/R/alike.R | 13 vetr-0.2.19/vetr/R/helper.R | 13 vetr-0.2.19/vetr/R/type.R | 46 - vetr-0.2.19/vetr/R/validate.R | 65 +- vetr-0.2.19/vetr/R/vetr-package.R | 3 vetr-0.2.19/vetr/README.md | 23 vetr-0.2.19/vetr/build/vignette.rds |binary vetr-0.2.19/vetr/inst/doc/alike.R | 10 vetr-0.2.19/vetr/inst/doc/alike.Rmd | 2 vetr-0.2.19/vetr/inst/doc/alike.html | 24 vetr-0.2.19/vetr/inst/doc/vetr.R | 40 - vetr-0.2.19/vetr/inst/doc/vetr.html | 19 vetr-0.2.19/vetr/man/alike.Rd | 18 vetr-0.2.19/vetr/man/type_alike.Rd | 39 - vetr-0.2.19/vetr/man/vet.Rd | 64 +- vetr-0.2.19/vetr/man/vetr-package.Rd | 19 vetr-0.2.19/vetr/man/vetr.Rd | 26 vetr-0.2.19/vetr/src/alike.c | 9 vetr-0.2.19/vetr/src/assumptions.c | 35 + vetr-0.2.19/vetr/src/backports.h |only vetr-0.2.19/vetr/src/eval.c | 24 vetr-0.2.19/vetr/src/fun.c | 11 vetr-0.2.19/vetr/src/init.c | 1 vetr-0.2.19/vetr/src/lang.c | 11 vetr-0.2.19/vetr/src/misc-alike.c | 15 vetr-0.2.19/vetr/src/misc.c | 12 vetr-0.2.19/vetr/src/parse.c | 384 ++++++------- vetr-0.2.19/vetr/src/r-copied.c | 3 vetr-0.2.19/vetr/src/type.c | 7 vetr-0.2.19/vetr/src/validate.c | 4 vetr-0.2.19/vetr/src/validate.h | 12 vetr-0.2.19/vetr/tests/unitizer/alike.R | 10 vetr-0.2.19/vetr/tests/unitizer/alike.unitizer/data.rds |binary vetr-0.2.19/vetr/tests/unitizer/parse.R | 32 - vetr-0.2.19/vetr/tests/unitizer/parse.unitizer/data.rds |binary vetr-0.2.19/vetr/tests/unitizer/validate.R | 11 vetr-0.2.19/vetr/tests/unitizer/validate.unitizer/data.rds |binary vetr-0.2.19/vetr/vignettes/alike.Rmd | 2 vetr-0.2.19/vetr/vignettes/rmdhunks/related-packages.Rmd | 6 43 files changed, 617 insertions(+), 506 deletions(-)
Title: Customizable China and Global Map Visualizations
Description: A 'ggplot2' extension centered on map visualization of China
and the globe. Provides customizable projections, boundary styles,
coordinate grids, scale bars, and buffer zones for thematic maps,
suitable for spatial data analysis and cartographic visualization.
Author: Liang Ren [aut, cre]
Maintainer: Liang Ren <rl23@mails.tsinghua.edu.cn>
Diff between ggmapcn versions 0.2.0 dated 2025-10-10 and 0.3.0 dated 2025-11-23
ggmapcn-0.2.0/ggmapcn/inst/doc/Adding_Spatial_Data.R |only ggmapcn-0.2.0/ggmapcn/inst/doc/Adding_Spatial_Data.Rmd |only ggmapcn-0.2.0/ggmapcn/inst/doc/Adding_Spatial_Data.html |only ggmapcn-0.2.0/ggmapcn/inst/extdata/world.rda |only ggmapcn-0.2.0/ggmapcn/vignettes/Adding_Spatial_Data.Rmd |only ggmapcn-0.3.0/ggmapcn/DESCRIPTION | 16 ggmapcn-0.3.0/ggmapcn/MD5 | 80 - ggmapcn-0.3.0/ggmapcn/NAMESPACE | 12 ggmapcn-0.3.0/ggmapcn/NEWS.md | 48 ggmapcn-0.3.0/ggmapcn/R/annotation_compass.R | 87 - ggmapcn-0.3.0/ggmapcn/R/annotation_graticule.R |only ggmapcn-0.3.0/ggmapcn/R/annotation_scalebar.R | 455 +++++--- ggmapcn-0.3.0/ggmapcn/R/check_geodata.R | 408 +++++-- ggmapcn-0.3.0/ggmapcn/R/coord_proj.R | 121 +- ggmapcn-0.3.0/ggmapcn/R/geom_boundary_cn.R | 150 +- ggmapcn-0.3.0/ggmapcn/R/geom_mapcn.R | 233 ++-- ggmapcn-0.3.0/ggmapcn/R/geom_world.R | 522 ++++++++-- ggmapcn-0.3.0/ggmapcn/R/ggmapcn-package.R | 38 ggmapcn-0.3.0/ggmapcn/README.md | 167 ++- ggmapcn-0.3.0/ggmapcn/build/vignette.rds |binary ggmapcn-0.3.0/ggmapcn/inst/doc/Adding_Basic_Map.R | 106 +- ggmapcn-0.3.0/ggmapcn/inst/doc/Adding_Basic_Map.Rmd | 251 ++-- ggmapcn-0.3.0/ggmapcn/inst/doc/Adding_Basic_Map.html | 181 ++- ggmapcn-0.3.0/ggmapcn/inst/doc/Advanced_Scalebar_and_Compass.R |only ggmapcn-0.3.0/ggmapcn/inst/doc/Advanced_Scalebar_and_Compass.Rmd |only ggmapcn-0.3.0/ggmapcn/inst/doc/Advanced_Scalebar_and_Compass.html |only ggmapcn-0.3.0/ggmapcn/inst/doc/World_Map_Overview.R |only ggmapcn-0.3.0/ggmapcn/inst/doc/World_Map_Overview.Rmd |only ggmapcn-0.3.0/ggmapcn/inst/doc/World_Map_Overview.html |only ggmapcn-0.3.0/ggmapcn/man/annotation_compass.Rd | 54 - ggmapcn-0.3.0/ggmapcn/man/annotation_graticule.Rd |only ggmapcn-0.3.0/ggmapcn/man/annotation_scalebar.Rd | 146 +- ggmapcn-0.3.0/ggmapcn/man/check_geodata.Rd | 121 +- ggmapcn-0.3.0/ggmapcn/man/coord_proj.Rd | 82 - ggmapcn-0.3.0/ggmapcn/man/figures/README-example-cn-albers-1.png |only ggmapcn-0.3.0/ggmapcn/man/figures/README-example-cn-basic-1.png |only ggmapcn-0.3.0/ggmapcn/man/figures/README-example-cn-boundaries-1.png |only ggmapcn-0.3.0/ggmapcn/man/figures/README-example-cn-buffer-1.png |only ggmapcn-0.3.0/ggmapcn/man/figures/README-example-world-1.png |only ggmapcn-0.3.0/ggmapcn/man/figures/README-example1-1.png |binary ggmapcn-0.3.0/ggmapcn/man/figures/README-example2-1.png |binary ggmapcn-0.3.0/ggmapcn/man/figures/README-example3-1.png |binary ggmapcn-0.3.0/ggmapcn/man/figures/README-example4-1.png |binary ggmapcn-0.3.0/ggmapcn/man/figures/README-example5-1.png |binary ggmapcn-0.3.0/ggmapcn/man/geom_boundary_cn.Rd | 51 ggmapcn-0.3.0/ggmapcn/man/geom_mapcn.Rd | 117 +- ggmapcn-0.3.0/ggmapcn/man/geom_world.Rd | 217 +++- ggmapcn-0.3.0/ggmapcn/man/ggmapcn-package.Rd | 38 ggmapcn-0.3.0/ggmapcn/vignettes/Adding_Basic_Map.Rmd | 251 ++-- ggmapcn-0.3.0/ggmapcn/vignettes/Advanced_Scalebar_and_Compass.Rmd |only ggmapcn-0.3.0/ggmapcn/vignettes/World_Map_Overview.Rmd |only 51 files changed, 2563 insertions(+), 1389 deletions(-)
Title: Data Published by the United States Federal Energy Regulatory
Commission
Description: Data published by the United States Federal Energy Regulatory Commission including
electric company financial data, natural gas company financial data,
hydropower plant data, liquified natural gas plant data, oil company financial data
natural gas company financial data, and natural gas storage field data.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between energyr versions 0.1.3 dated 2024-07-08 and 0.2 dated 2025-11-23
DESCRIPTION | 14 ++++++----- MD5 | 32 +++++++++++++++++---------- NEWS.md | 10 ++++++-- R/electric.R | 14 ++++++----- R/energyr.R | 4 +-- R/gas.R | 10 +++++--- R/hydropower.R | 11 +++++---- R/lng.R | 9 ++++--- R/oil.R | 10 +++++--- R/pipeline.R | 13 ++++++----- R/storage.R | 13 ++++++----- README.md | 67 ++++++++++++++++++++++++++++++++++++--------------------- inst/CITATION | 15 ++++++++++-- tests |only 14 files changed, 141 insertions(+), 81 deletions(-)
Title: Tools for Computations with Discrete Splines
Description: Discrete splines are a class of univariate piecewise polynomial
functions which are analogous to splines, but whose smoothness is defined
via divided differences rather than derivatives. Tools for efficient
computations relating to discrete splines are provided here. These tools
include discrete differentiation and integration, various matrix
computations with discrete derivative or discrete spline bases matrices, and
interpolation within discrete spline spaces. These techniques are described
in Tibshirani (2020) <doi:10.48550/arXiv.2003.03886>.
Author: Logan Brooks [ctb],
Addison Hu [aut],
Daniel McDonald [ctb],
Ryan Tibshirani [aut, cre, cph]
Maintainer: Ryan Tibshirani <ryantibs@gmail.com>
Diff between dspline versions 1.0.2 dated 2025-05-14 and 1.0.3 dated 2025-11-23
dspline-1.0.2/dspline/man/figures/README-show-dsplines-1.png |only dspline-1.0.3/dspline/DESCRIPTION | 9 ++- dspline-1.0.3/dspline/MD5 | 25 ++++++----- dspline-1.0.3/dspline/NEWS.md | 4 + dspline-1.0.3/dspline/R/checks.R | 10 ++-- dspline-1.0.3/dspline/R/matrix_evaluation.R | 1 dspline-1.0.3/dspline/R/projection.R | 3 - dspline-1.0.3/dspline/README.md | 10 ++-- dspline-1.0.3/dspline/build/vignette.rds |only dspline-1.0.3/dspline/inst/doc |only dspline-1.0.3/dspline/man/dspline_solve.Rd | 2 dspline-1.0.3/dspline/man/figures/README-db-splines-1.png |only dspline-1.0.3/dspline/src/matrix_construction.cpp | 1 dspline-1.0.3/dspline/tests/testthat/test-dspline.R | 8 +-- dspline-1.0.3/dspline/vignettes |only 15 files changed, 41 insertions(+), 32 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-12-04 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-09 0.1.0