Sun, 23 Nov 2025

Package unnest updated to version 0.1 with previous version 0.0.7 dated 2025-03-18

Title: Unnest Hierarchical Data Structures
Description: Fast flattening of hierarchical data structures (e.g. JSON, XML) into data.frames with a flexible spec language.
Author: Vitalie Spinu [aut, cre]
Maintainer: Vitalie Spinu <spinuvit@gmail.com>

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Package geometries updated to version 0.2.5 with previous version 0.2.4 dated 2024-01-15

Title: Convert Between R Objects and Geometric Structures
Description: Geometry shapes in 'R' are typically represented by matrices (points, lines), with more complex shapes being lists of matrices (polygons). 'Geometries' will convert various 'R' objects into these shapes. Conversion functions are available at both the 'R' level, and through 'Rcpp'.
Author: David Cooley [aut, cre]
Maintainer: David Cooley <david.cooley.au@gmail.com>

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Package argo updated to version 3.0.3 with previous version 3.0.2 dated 2023-05-24

Title: Accurate Estimation of Influenza Epidemics using Google Search Data
Description: Augmented Regression with General Online data (ARGO) for accurate estimation of influenza epidemics in United States on national level, regional level and state level. It replicates the method introduced in paper Yang, S., Santillana, M. and Kou, S.C. (2015) <doi:10.1073/pnas.1515373112>; Ning, S., Yang, S. and Kou, S.C. (2019) <doi:10.1038/s41598-019-41559-6>; Yang, S., Ning, S. and Kou, S.C. (2021) <doi:10.1038/s41598-021-83084-5>.
Author: Shaoyang Ning [aut], Shihao Yang [aut, cre], S. C. Kou [aut]
Maintainer: Shihao Yang <shihao.yang@isye.gatech.edu>

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Package rqlm updated to version 3.1-1 with previous version 2.3-1 dated 2025-01-12

Title: Modified Poisson, Logistic and Least-Squares Regressions for Binary Outcome and Their Generalizations
Description: Modified Poisson, logistic and least-squares regression analyses for binary outcomes of Zou (2004) <doi:10.1093/aje/kwh090>, Noma (2025)<Forthcoming>, and Cheung (2007) <doi:10.1093/aje/kwm223> have been standard multivariate analysis methods to estimate risk ratio and risk difference in clinical and epidemiological studies. This R package involves an easy-to-handle function to implement these analyses by simple commands. Missing data analysis tools (multiple imputation) are also involved. In addition, recent studies have shown the ordinary robust variance estimator possibly has serious bias under small or moderate sample size situations for these methods. This package also provides computational tools to calculate alternative accurate confidence intervals.
Author: Hisashi Noma [aut, cre]
Maintainer: Hisashi Noma <noma@ism.ac.jp>

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Package ibdsim2 updated to version 2.3.2 with previous version 2.3.1 dated 2025-08-22

Title: Simulation of Chromosomal Regions Shared by Family Members
Description: Simulation of segments shared identical-by-descent (IBD) by pedigree members. Using sex specific recombination rates along the human genome (Halldorsson et al. (2019) <doi:10.1126/science.aau1043>), phased chromosomes are simulated for all pedigree members. Applications include calculation of realised relatedness coefficients and IBD segment distributions. 'ibdsim2' is part of the 'pedsuite' collection of packages for pedigree analysis. A detailed presentation of the 'pedsuite', including a separate chapter on 'ibdsim2', is available in the book 'Pedigree analysis in R' (Vigeland, 2021, ISBN:9780128244302). A 'Shiny' app for visualising and comparing IBD distributions is available at <https://magnusdv.shinyapps.io/ibdsim2-shiny/>.
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>

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Package pedsuite updated to version 1.4.0 with previous version 1.3.1 dated 2024-09-06

Title: Easy Installation of the 'pedsuite' Packages for Pedigree Analysis
Description: The 'pedsuite' is a collection of packages for pedigree analysis, covering applications in forensic genetics, medical genetics and more. A detailed presentation of the 'pedsuite' is given in the book 'Pedigree Analysis in R' (Vigeland, 2021, ISBN: 9780128244302).
Author: Magnus Dehli Vigeland [aut, cre] , Thore Egeland [aut]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>

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Package psvd readmission to version 1.1-0 with previous version 1.0-0 dated 2025-07-17

Title: Eigendecomposition, Singular-Values and the Power Method
Description: For a data matrix with m rows and n columns (m>=n), the power method is used to compute, simultaneously, the eigendecomposition of a square symmetric matrix. This result is used to obtain the singular value decomposition (SVD) and the principal component analysis (PCA) results. Compared to the classical SVD method, the first r singular values can be computed.
Author: Doulaye Dembele [aut, cre]
Maintainer: Doulaye Dembele <doulaye@igbmc.fr>

This is a re-admission after prior archival of version 1.0-0 dated 2025-07-17

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Package privacyR updated to version 1.0.1 with previous version 1.0.0 dated 2025-11-17

Title: Privacy-Preserving Data Anonymization
Description: Tools for anonymizing sensitive patient and research data. Helps protect privacy while keeping data useful for analysis. Anonymizes IDs, names, dates, locations, and ages while maintaining referential integrity. Methods based on: Sweeney (2002) <doi:10.1142/S0218488502001648>, Dwork et al. (2006) <doi:10.1007/11681878_14>, El Emam et al. (2011) <doi:10.1371/journal.pone.0028071>, Fung et al. (2010) <doi:10.1145/1749603.1749605>.
Author: Vikrant Dev Rathore [aut, cre]
Maintainer: Vikrant Dev Rathore <rathore.vikrant@gmail.com>

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Package NeuroDataSets updated to version 0.3.0 with previous version 0.2.0 dated 2025-09-07

Title: A Comprehensive Collection of Neuroscience and Brain-Related Datasets
Description: Offers a rich and diverse collection of datasets focused on the brain, nervous system, and related disorders. The package includes clinical, experimental, neuroimaging, behavioral, cognitive, and simulated data on conditions such as Parkinson's disease, Alzheimer's disease, dementia, epilepsy, schizophrenia, autism spectrum disorder, attention deficit, hyperactivity disorder, Tourette's syndrome, traumatic brain injury, gliomas, migraines, headaches, sleep disorders, concussions, encephalitis, subarachnoid hemorrhage, and mental health conditions. Datasets cover structural and functional brain data, cross-sectional and longitudinal MRI imaging studies, neurotransmission, gene expression, cognitive performance, intelligence metrics, sleep deprivation effects, treatment outcomes, brain-body relationships across species, neurological injury patterns, and acupuncture interventions. Data sources include peer-reviewed studies, clinical trials, military health records, sports injury databases [...truncated...]
Author: Renzo Caceres Rossi [aut, cre]
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>

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Package lcc readmission to version 3.2.2 with previous version 1.1.4 dated 2022-08-25

Title: Advanced Analysis of Longitudinal Data Using the Concordance Correlation Coefficient
Description: Methods for assessing agreement between repeated measurements obtained by two or more methods using the longitudinal concordance correlation coefficient (LCC). Polynomial mixed-effects models (via 'nlme') describe how concordance, Pearson correlation and accuracy evolve over time. Functions are provided for model fitting, diagnostic plots, extraction of summaries, and non-parametric bootstrap confidence intervals (including parallel computation), following Oliveira et al. (2018) <doi:10.1007/s13253-018-0321-1>.
Author: Thiago de Paula Oliveira [aut, cre] , Rafael de Andrade Moral [aut] , Silvio Sandoval Zocchi [ctb] , Clarice Garcia Borges Demetrio [ctb] , John Hinde [aut]
Maintainer: Thiago de Paula Oliveira <thiago.paula.oliveira@alumni.usp.br>

This is a re-admission after prior archival of version 1.1.4 dated 2022-08-25

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Package R4GoodPersonalFinances updated to version 1.2.0 with previous version 1.1.0 dated 2025-07-29

Title: Make Optimal Financial Decisions
Description: Make optimal decisions for your personal or household finances. Use tools and methods that are selected carefully to align with academic consensus, bridging the gap between theoretical knowledge and practical application. They help you find your own personalized optimal discretionary spending or optimal asset allocation, and prepare you for retirement or financial independence. The optimal solution to this problems is extremely complex, and we only have a single lifetime to get it right. Fortunately, we now have the user-friendly tools implemented, that integrate life-cycle models with single-period net-worth mean-variance optimization models. Those tools can be used by anyone who wants to see what highly-personalized optimal decisions can look like. For more details see: Idzorek T., Kaplan P. (2024, ISBN:9781952927379), Haghani V., White J. (2023, ISBN:9781119747918).
Author: Kamil Wais [aut, cre, cph, fnd] , Olesia Wais [aut]
Maintainer: Kamil Wais <kamil.wais@gmail.com>

Diff between R4GoodPersonalFinances versions 1.1.0 dated 2025-07-29 and 1.2.0 dated 2025-11-23

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More information about R4GoodPersonalFinances at CRAN
Permanent link

Package glyrepr updated to version 0.9.0 with previous version 0.8.0 dated 2025-11-09

Title: Representation for Glycan Compositions and Structures
Description: Computational representations of glycan compositions and structures, including details such as linkages, anomers, and substituents. Supports varying levels of monosaccharide specificity (e.g., "Hex" or "Gal") and ambiguous linkages. Provides robust parsing and generation of IUPAC-condensed structure strings. Optimized for vectorized operations on glycan structures, with efficient handling of duplications. As the cornerstone of the glycoverse ecosystem, this package delivers the foundational data structures that power glycomics and glycoproteomics analysis workflows.
Author: Bin Fu [aut, cre, cph]
Maintainer: Bin Fu <23110220018@m.fudan.edu.cn>

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Package BRBVS (with last version 0.2.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2024-06-27 0.2.1
2024-01-09 0.1.1

Permanent link
Package bayMDS updated to version 2.1 with previous version 2.0 dated 2022-11-07

Title: Bayesian Multidimensional Scaling and Choice of Dimension
Description: Bayesian approach to multidimensional scaling. The package consists of implementations of the methods of Oh and Raftery (2001) <doi:10.1198/016214501753208690>.
Author: Man-Suk Oh [aut, cre], Eun-Kyung Lee [aut]
Maintainer: Man-Suk Oh <msoh@ewha.ac.kr>

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Package vetr updated to version 0.2.19 with previous version 0.2.18 dated 2024-06-21

Title: Trust, but Verify
Description: Declarative template-based framework for verifying that objects meet structural requirements, and auto-composing error messages when they do not.
Author: Brodie Gaslam [aut, cre], Paxdiablo [cph] , R Core Team [cph] , Michael Chirico [ctb]
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>

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Package ggmapcn updated to version 0.3.0 with previous version 0.2.0 dated 2025-10-10

Title: Customizable China and Global Map Visualizations
Description: A 'ggplot2' extension centered on map visualization of China and the globe. Provides customizable projections, boundary styles, coordinate grids, scale bars, and buffer zones for thematic maps, suitable for spatial data analysis and cartographic visualization.
Author: Liang Ren [aut, cre]
Maintainer: Liang Ren <rl23@mails.tsinghua.edu.cn>

Diff between ggmapcn versions 0.2.0 dated 2025-10-10 and 0.3.0 dated 2025-11-23

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Package energyr updated to version 0.2 with previous version 0.1.3 dated 2024-07-08

Title: Data Published by the United States Federal Energy Regulatory Commission
Description: Data published by the United States Federal Energy Regulatory Commission including electric company financial data, natural gas company financial data, hydropower plant data, liquified natural gas plant data, oil company financial data natural gas company financial data, and natural gas storage field data.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>

Diff between energyr versions 0.1.3 dated 2024-07-08 and 0.2 dated 2025-11-23

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Package dspline updated to version 1.0.3 with previous version 1.0.2 dated 2025-05-14

Title: Tools for Computations with Discrete Splines
Description: Discrete splines are a class of univariate piecewise polynomial functions which are analogous to splines, but whose smoothness is defined via divided differences rather than derivatives. Tools for efficient computations relating to discrete splines are provided here. These tools include discrete differentiation and integration, various matrix computations with discrete derivative or discrete spline bases matrices, and interpolation within discrete spline spaces. These techniques are described in Tibshirani (2020) <doi:10.48550/arXiv.2003.03886>.
Author: Logan Brooks [ctb], Addison Hu [aut], Daniel McDonald [ctb], Ryan Tibshirani [aut, cre, cph]
Maintainer: Ryan Tibshirani <ryantibs@gmail.com>

Diff between dspline versions 1.0.2 dated 2025-05-14 and 1.0.3 dated 2025-11-23

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Package TSdeeplearning (with last version 0.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2022-09-09 0.1.0

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Package decompDL (with last version 0.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2023-12-04 0.1.0

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