Title: Removal of Unwanted Technical Variation from UK Biobank NMR
Metabolomics Biomarker Data
Description: A suite of utilities for working with the UK Biobank
<https://www.ukbiobank.ac.uk/> Nuclear Magnetic Resonance spectroscopy (NMR)
metabolomics data <https://biobank.ndph.ox.ac.uk/showcase/label.cgi?id=220>.
Includes functions for extracting biomarkers from decoded UK Biobank field
data, removing unwanted technical variation from biomarker concentrations,
computing an extended set of lipid, fatty acid, and cholesterol fractions,
and for re-deriving composite biomarkers and ratios after adjusting data
for unwanted biological variation. For further details on methods see
Ritchie SC et al. Sci Data (2023) <doi:10.1038/s41597-023-01949-y>.
Author: Scott C Ritchie [aut, cre]
Maintainer: Scott C Ritchie <sritchie73@gmail.com>
Diff between ukbnmr versions 3.2.0 dated 2024-11-14 and 3.3.0 dated 2025-11-27
DESCRIPTION | 11 +- MD5 | 14 +-- NEWS.md | 17 +++ R/biomarker_qc.R | 13 +++ R/utils.R | 2 build/vignette.rds |binary inst/doc/ukbnmr.R | 218 +++++++++++++++++++++++++-------------------------- inst/doc/ukbnmr.html | 5 - 8 files changed, 156 insertions(+), 124 deletions(-)
Title: Tools of Utilization and Cost in Healthcare
Description: R implementation of the software tools developed in the H-CUP
(Healthcare Cost and Utilization Project) <https://hcup-us.ahrq.gov>
and AHRQ (Agency for Healthcare Research and Quality)
<https://www.ahrq.gov>. It currently contains functions for mapping ICD-9
codes to the AHRQ comorbidity measures and translating ICD-9
(resp. ICD-10) codes to ICD-10 (resp. ICD-9) codes based on GEM (General
Equivalence Mappings) from CMS (Centers for Medicare and Medicaid
Services).
Author: Wenjie Wang [aut, cre] ,
Yan Li [aut],
Jun Yan [aut]
Maintainer: Wenjie Wang <wang@wwenjie.org>
Diff between touch versions 0.1-6 dated 2022-07-08 and 0.1-7 dated 2025-11-27
DESCRIPTION | 13 ++++++------- MD5 | 32 ++++++++++++++++---------------- NEWS.md | 15 +++++++++++++++ R/cmbd.R | 2 +- R/crosswalk.R | 14 +------------- R/data.R | 2 +- R/format.R | 2 +- R/sysdata.rda |binary R/utils.R | 2 +- R/zzz.R | 2 +- README.md | 5 ++--- data/dxDat.rda |binary inst/CITATION | 27 ++++++++++++--------------- man/icd_map.Rd | 12 ------------ src/Makevars | 2 +- src/apply_gems.cpp | 2 +- src/initialize_gems.cpp | 2 +- 17 files changed, 60 insertions(+), 74 deletions(-)
Title: Financial and Actuarial Mathematics for Life Contingencies
Description: Classes and methods that allow the user to manage life table,
actuarial tables (also multiple decrements tables). Moreover, functions to easily
perform demographic, financial and actuarial mathematics on life contingencies
insurances calculations are contained therein. See Spedicato (2013) <doi:10.18637/jss.v055.i10>.
Author: Giorgio Alfredo Spedicato [aut, cre] ,
Christophe Dutang [ctb] ,
Reinhold Kainhofer [ctb] ,
Kevin J Owens [ctb],
Ernesto Schirmacher [ctb],
Gian Paolo Clemente [ctb] ,
Ivan Williams [ctb]
Maintainer: Giorgio Alfredo Spedicato <spedicato_giorgio@yahoo.it>
Diff between lifecontingencies versions 1.4.3 dated 2025-09-18 and 1.4.4 dated 2025-11-27
DESCRIPTION | 6 MD5 | 70 + NEWS.md | 465 ++++++------- R/4_financialFunctions.R | 87 +- R/RcppExports.R | 4 build/vignette.rds |binary data/AF92Lt.rda |binary data/AM92Lt.rda |binary data/SoAISTdata.rda |binary data/de_angelis_di_falco.rda |binary data/demoCanada.rda |binary data/demoChina.rda |binary data/demoFrance.rda |binary data/demoGermany.rda |binary data/demoIta.rda |binary data/demoJapan.rda |binary data/demoUk.rda |binary data/demoUsa.rda |binary data/soa08.rda |binary data/soa08Act.rda |binary data/soaLt.rda |binary inst/doc/PensionPlanVal.html | 2 inst/doc/an_introduction_to_lifecontingencies_package.Rnw | 19 inst/doc/an_introduction_to_lifecontingencies_package.pdf |binary inst/doc/compute-detail.html | 2 inst/doc/mortality_projection.Rnw | 2 inst/doc/mortality_projection.pdf |binary inst/doc/pensionfunding.Rmd | 10 inst/doc/pensionfunding.html | 102 +- man/presentValue.Rd | 95 +- src/RcppExports.cpp | 16 src/lifecontingenciesRcpp.cpp | 22 tests/testthat/test-presentValue.R |only tests/testthat/testPresentValue.R |only vignettes/an_introduction_to_lifecontingencies_package.Rnw | 19 vignettes/mortality_projection.Rnw | 2 vignettes/pensionfunding.Rmd | 10 37 files changed, 490 insertions(+), 443 deletions(-)
More information about lifecontingencies at CRAN
Permanent link
Title: Power Analyses using Monte Carlo Simulations
Description: Provides a general purpose simulation-based power analysis
API for routine and customized simulation experimental designs.
The package focuses exclusively on Monte Carlo simulation experiment variants of
(expected) prospective power analyses,
criterion analyses, compromise analyses, sensitivity analyses, and
a priori/post-hoc analyses. The default simulation experiment functions defined within the package
provide stochastic variants of the power analysis subroutines in
G*Power 3.1 (Faul, Erdfelder, Buchner, and Lang, 2009) <doi:10.3758/brm.41.4.1149>,
along with various other parametric and non-parametric power analysis
applications (e.g., mediation analyses) and support for Bayesian power analysis
by way of Bayes factors or posterior probability evaluations.
Additional functions for building
empirical power curves, reanalyzing simulation information, and
for increasing the precision of the resulting power
estimates are also included, each of which utilize similar API structures. [...truncated...]
Author: Phil Chalmers [aut, cre]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between Spower versions 0.5.0 dated 2025-10-16 and 0.5.1 dated 2025-11-27
DESCRIPTION | 12 MD5 | 59 +- NAMESPACE | 2 R/Spower.R | 3 R/SpowerBatch.R | 48 + R/p_2r.R | 120 ++-- R/p_mcnemar.test.R | 18 R/p_slr.R |only R/p_t.test.R | 10 R/p_wilcox.test.R | 15 README.md | 70 +- inst/doc/SpowerIntro.Rmd | 52 +- inst/doc/SpowerIntro.html | 82 +-- inst/doc/SpowerIntro_logicals.Rmd | 34 - inst/doc/SpowerIntro_logicals.html | 46 - inst/doc/Spower_TypeSM.html | 14 inst/doc/gpower_examples.Rmd | 873 ++++++++++++++++++++++++++-------- inst/doc/gpower_examples.html | 946 +++++++++++++++++++++++++------------ inst/intro.rds |binary inst/intro2.rds |binary inst/intro3.rds |binary man/Spower.Rd | 48 + man/p_2r.Rd | 93 +-- man/p_mcnemar.test.Rd | 14 man/p_slr.Rd |only man/p_t.test.Rd | 6 man/p_wilcox.test.Rd | 11 tests/testthat/test-Spower.R | 47 - vignettes/SpowerIntro.Rmd | 52 +- vignettes/SpowerIntro_logicals.Rmd | 34 - vignettes/gpower_examples.Rmd | 873 ++++++++++++++++++++++++++-------- vignettes/tetrachoric.png |only 32 files changed, 2516 insertions(+), 1066 deletions(-)
Title: Text Tokenization using Byte Pair Encoding and Unigram Modelling
Description: Unsupervised text tokenizer allowing to perform byte pair encoding and unigram modelling.
Wraps the 'sentencepiece' library <https://github.com/google/sentencepiece> which provides a language independent tokenizer to split text in words and smaller subword units.
The techniques are explained in the paper "SentencePiece: A simple and language independent subword tokenizer and detokenizer for Neural Text Processing" by Taku Kudo and John Richardson (2018) <doi:10.18653/v1/D18-2012>.
Provides as well straightforward access to pretrained byte pair encoding models and subword embeddings trained on Wikipedia using 'word2vec',
as described in "BPEmb: Tokenization-free Pre-trained Subword Embeddings in 275 Languages" by Benjamin Heinzerling and Michael Strube (2018) <http://www.lrec-conf.org/proceedings/lrec2018/pdf/1049.pdf>.
Author: Jan Wijffels [aut, cre, cph] ,
BNOSAC [cph] ,
Google Inc. [ctb, cph] ,
The Abseil Authors [ctb, cph] ,
Google Inc. [ctb, cph] ),
Kenton Varda [ctb, cph] ),
Sanjay Ghemawat [ctb, cph] ),
Jeff Dean [ctb, cph] ),
Laszlo Csomor [ctb, cph] ),
Wink Sav [...truncated...]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between sentencepiece versions 0.2.3 dated 2022-11-13 and 0.2.4 dated 2025-11-27
DESCRIPTION | 6 - MD5 | 8 +- NEWS.md | 5 + src/Makevars | 1 src/third_party/protobuf-lite/google/protobuf/repeated_field.h | 36 +++++++--- 5 files changed, 40 insertions(+), 16 deletions(-)
Title: Detect Line Segments in Images
Description: An implementation of the Line Segment Detector on digital images described in the paper: "LSD: A Fast Line Segment Detector with a False Detection Control" by Rafael Grompone von Gioi et al (2012).
The algorithm is explained at <doi:10.5201/ipol.2012.gjmr-lsd>.
Author: Jan Wijffels [aut, cre, cph] ,
BNOSAC [cph] ,
Rafael Grompone von Gioi [ctb, cph]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between image.LineSegmentDetector versions 0.1.0 dated 2020-07-27 and 0.1.1 dated 2025-11-27
image.LineSegmentDetector-0.1.0/image.LineSegmentDetector/inst/CITATION |only image.LineSegmentDetector-0.1.1/image.LineSegmentDetector/DESCRIPTION | 8 ++--- image.LineSegmentDetector-0.1.1/image.LineSegmentDetector/MD5 | 15 +++++----- image.LineSegmentDetector-0.1.1/image.LineSegmentDetector/NEWS |only image.LineSegmentDetector-0.1.1/image.LineSegmentDetector/R/line_segment_detector.R | 12 ++++---- image.LineSegmentDetector-0.1.1/image.LineSegmentDetector/R/pkg.R | 2 - image.LineSegmentDetector-0.1.1/image.LineSegmentDetector/build |only image.LineSegmentDetector-0.1.1/image.LineSegmentDetector/man/image.LineSegmentDetector-package.Rd | 13 ++++++++ image.LineSegmentDetector-0.1.1/image.LineSegmentDetector/man/image_line_segment_detector.Rd | 12 ++++---- image.LineSegmentDetector-0.1.1/image.LineSegmentDetector/src/RcppExports.cpp | 5 +++ 10 files changed, 42 insertions(+), 25 deletions(-)
More information about image.LineSegmentDetector at CRAN
Permanent link
Title: Implementation of the Unsupervised Smooth Contour Line Detection
for Images
Description: An implementation of the Unsupervised Smooth Contour Detection algorithm for digital images as described in the paper: "Unsupervised Smooth Contour Detection" by Rafael Grompone von Gioi, and Gregory Randall (2016).
The algorithm is explained at <doi:10.5201/ipol.2016.175>.
Author: Jan Wijffels [aut, cre, cph] ,
BNOSAC [cph] ,
Rafael Grompone von Gioi [ctb, cph] ,
Gregory Randall [ctb, cph] ,
Niccolo Marchi [ctb]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between image.ContourDetector versions 0.1.1 dated 2021-11-17 and 0.1.2 dated 2025-11-27
image.ContourDetector-0.1.1/image.ContourDetector/inst/CITATION |only image.ContourDetector-0.1.2/image.ContourDetector/DESCRIPTION | 8 +++--- image.ContourDetector-0.1.2/image.ContourDetector/MD5 | 13 ++++------ image.ContourDetector-0.1.2/image.ContourDetector/NEWS.md | 5 +++ image.ContourDetector-0.1.2/image.ContourDetector/R/contour_detector.R | 6 ++-- image.ContourDetector-0.1.2/image.ContourDetector/build/partial.rdb |binary image.ContourDetector-0.1.2/image.ContourDetector/man/image.ContourDetector-package.Rd | 13 ++++++++++ image.ContourDetector-0.1.2/image.ContourDetector/man/image_contour_detector.Rd | 6 ++-- 8 files changed, 34 insertions(+), 17 deletions(-)
More information about image.ContourDetector at CRAN
Permanent link
Title: Read and Write WAV Files
Description: Efficiently read and write Waveform (WAV) audio files <https://en.wikipedia.org/wiki/WAV>.
Support for unsigned 8 bit Pulse-code modulation (PCM), signed 12, 16, 24 and 32 bit
PCM and other encodings.
Author: Daniel Falbel [aut, cre, cph],
Posit, PBC [cph],
David Reid [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between wav versions 0.1.0 dated 2022-11-28 and 0.1.1 dated 2025-11-27
DESCRIPTION | 7 +++---- MD5 | 5 +++-- NEWS.md |only README.md | 1 + 4 files changed, 7 insertions(+), 6 deletions(-)
Title: Fitting Semi-Parametric Generalized log-Gamma Regression Models
Description: Set of tools to fit a linear multiple or semi-parametric regression
models with the possibility of non-informative random right or left censoring.
Under this setup, the localization parameter of the response variable distribution is modeled by using linear multiple regression
or semi-parametric functions, whose non-parametric components may be approximated
by natural cubic spline or P-splines. The supported distribution for the model error is a generalized log-gamma distribution which includes
the generalized extreme value and standard normal distributions as important special cases. Inference is based on likelihood, penalized likelihood and bootstrap methods.
Lastly, some numerical and graphical devices for diagnostic of the fitted models are offered.
Author: Carlos Alberto Cardozo Delgado [aut, cre, cph] ,
Gilberto Paula [aut],
Luis Vanegas [aut]
Maintainer: Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>
Diff between sglg versions 0.2.2 dated 2022-09-03 and 0.2.3 dated 2025-11-27
sglg-0.2.2/sglg/man/influence.sglg.Rd |only sglg-0.2.2/sglg/man/quantile_residuals.Rd |only sglg-0.2.3/sglg/DESCRIPTION | 21 +- sglg-0.2.3/sglg/MD5 | 68 +++++--- sglg-0.2.3/sglg/NAMESPACE | 9 - sglg-0.2.3/sglg/R/BallBearing.R |only sglg-0.2.3/sglg/R/aux_fs.R | 8 - sglg-0.2.3/sglg/R/claims.R |only sglg-0.2.3/sglg/R/deviance_residuals.R | 2 sglg-0.2.3/sglg/R/dk_order_glg.R |only sglg-0.2.3/sglg/R/glg.R | 234 ++++++++++-------------------- sglg-0.2.3/sglg/R/influence.sglg.R | 63 +------- sglg-0.2.3/sglg/R/moors_lss.R |only sglg-0.2.3/sglg/R/mrl_gg.R |only sglg-0.2.3/sglg/R/order_glg.R | 1 sglg-0.2.3/sglg/R/pk_order_glg.R |only sglg-0.2.3/sglg/R/quantile_residuals.R | 10 - sglg-0.2.3/sglg/R/response_scheme.R |only sglg-0.2.3/sglg/R/rglg.R | 10 - sglg-0.2.3/sglg/R/sglg.R | 4 sglg-0.2.3/sglg/R/shape.R | 6 sglg-0.2.3/sglg/R/slicing_exercises.R |only sglg-0.2.3/sglg/R/summary.sglg.R | 38 ++-- sglg-0.2.3/sglg/R/survglg.R | 18 +- sglg-0.2.3/sglg/R/survival_glg.R | 2 sglg-0.2.3/sglg/data |only sglg-0.2.3/sglg/man/ballbearing.Rd |only sglg-0.2.3/sglg/man/claims.Rd |only sglg-0.2.3/sglg/man/cweight_scheme.Rd |only sglg-0.2.3/sglg/man/deviance_residuals.Rd | 76 ++++----- sglg-0.2.3/sglg/man/dk_order_glg.Rd |only sglg-0.2.3/sglg/man/glg.Rd | 10 - sglg-0.2.3/sglg/man/moors_lss.Rd |only sglg-0.2.3/sglg/man/mrl_gg.Rd |only sglg-0.2.3/sglg/man/order_glg.Rd | 1 sglg-0.2.3/sglg/man/pk_order_glg.Rd |only sglg-0.2.3/sglg/man/quantile_sglg.Rd |only sglg-0.2.3/sglg/man/response_scheme.Rd |only sglg-0.2.3/sglg/man/rglg.Rd | 3 sglg-0.2.3/sglg/man/sglg.Rd | 2 sglg-0.2.3/sglg/man/shape.Rd | 4 sglg-0.2.3/sglg/man/survglg.Rd | 14 + sglg-0.2.3/sglg/man/survival_gg.Rd | 2 sglg-0.2.3/sglg/man/t_lambda.Rd |only sglg-0.2.3/sglg/tests/testthat/test_glg.R | 2 45 files changed, 260 insertions(+), 348 deletions(-)
Title: Convert Files to Parquet Format
Description: Collection of functions to get files in parquet format.
Parquet is a columnar storage file format <https://parquet.apache.org/>.
The files to convert can be of several formats
("csv", "RData", "rds", "RSQLite",
"json", "ndjson", "SAS", "SPSS"...).
Author: Damien Dotta [aut, cre],
Nicolas Chuche [aut]
Maintainer: Damien Dotta <damien.dotta@live.fr>
This is a re-admission after prior archival of version 0.5.7 dated 2024-03-04
Diff between parquetize versions 0.5.7 dated 2024-03-04 and 0.5.8 dated 2025-11-27
parquetize-0.5.7/parquetize/tests/testthat/_snaps |only parquetize-0.5.8/parquetize/DESCRIPTION | 11 + parquetize-0.5.8/parquetize/MD5 | 56 +++++----- parquetize-0.5.8/parquetize/NAMESPACE | 2 parquetize-0.5.8/parquetize/NEWS.md | 6 + parquetize-0.5.8/parquetize/R/csv_to_parquet.R | 2 parquetize-0.5.8/parquetize/R/get_parquet_info.R |only parquetize-0.5.8/parquetize/R/package-parquetize.R | 1 parquetize-0.5.8/parquetize/README.md | 3 parquetize-0.5.8/parquetize/build/vignette.rds |binary parquetize-0.5.8/parquetize/inst/doc/aa-conversions.R | 46 ++++---- parquetize-0.5.8/parquetize/inst/doc/aa-conversions.Rmd | 5 parquetize-0.5.8/parquetize/inst/doc/aa-conversions.html | 33 +---- parquetize-0.5.8/parquetize/man/check_parquet.Rd | 24 ++-- parquetize-0.5.8/parquetize/man/csv_to_parquet.Rd | 14 +- parquetize-0.5.8/parquetize/man/dbi_to_parquet.Rd | 8 - parquetize-0.5.8/parquetize/man/download_extract.Rd | 8 - parquetize-0.5.8/parquetize/man/fst_to_parquet.Rd | 8 - parquetize-0.5.8/parquetize/man/get_parquet_info.Rd |only parquetize-0.5.8/parquetize/man/get_partitions.Rd | 4 parquetize-0.5.8/parquetize/man/json_to_parquet.Rd | 8 - parquetize-0.5.8/parquetize/man/parquetize_example.Rd | 4 parquetize-0.5.8/parquetize/man/rbind_parquet.Rd | 6 - parquetize-0.5.8/parquetize/man/rds_to_parquet.Rd | 8 - parquetize-0.5.8/parquetize/man/sqlite_to_parquet.Rd | 8 - parquetize-0.5.8/parquetize/man/table_to_parquet.Rd | 18 +-- parquetize-0.5.8/parquetize/man/write_parquet_at_once.Rd | 2 parquetize-0.5.8/parquetize/man/write_parquet_by_chunk.Rd | 14 +- parquetize-0.5.8/parquetize/tests/testthat/test-get_parquet_info.R |only parquetize-0.5.8/parquetize/tests/testthat/test-testthat-helpers.R | 2 parquetize-0.5.8/parquetize/vignettes/aa-conversions.Rmd | 5 31 files changed, 160 insertions(+), 146 deletions(-)
Title: Analysing and Plotting Genotype-Phenotype Maps
Description: Tools for studying genotype-phenotype maps for bi-allelic loci underlying quantitative phenotypes. The 0.1 version is released in connection with the publication of Gjuvsland et al (2013) and implements basic line plots and the monotonicity measures for GP maps presented in the paper. Reference: Gjuvsland AB, Wang Y, Plahte E and Omholt SW (2013) Monotonicity is a key feature of genotype-phenotype maps. Frontier in Genetics 4:216 <doi:10.3389/fgene.2013.00216>.
Author: Arne B. Gjuvsland [aut, cre],
Yunpeng Wang [aut]
Maintainer: Arne B. Gjuvsland <arne.gjuvsland@nmbu.no>
Diff between gpmap versions 0.1.2 dated 2021-02-15 and 0.1.3 dated 2025-11-27
DESCRIPTION | 18 ++++++++----- MD5 | 21 ++++++++------- R/gpmaps.R | 56 +++++++++++++++++++++--------------------- build |only man/GPmaps.Rd | 4 +-- man/decompose_monotone.Rd | 2 - man/degree_of_monotonicity.Rd | 2 - man/enumerate_genotypes.Rd | 2 - man/generate_gpmap.Rd | 2 - man/gpmap-package.Rd | 8 +++--- man/monotone_regression.Rd | 2 - man/partial_genotype_order.Rd | 2 - 12 files changed, 62 insertions(+), 57 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-02 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-29 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-11 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-10 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-12-05 0.5.0
2020-11-09 0.3.2
2020-11-04 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-04 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-01-24 0.1.2
2023-04-24 0.1.1
Title: Seamless Access to World Bank International Debt Statistics
(IDS)
Description: Access and analyze the World Bank's International Debt Statistics
(IDS) <https://www.worldbank.org/en/programs/debt-statistics/ids>.
IDS provides creditor-debtor relationships between countries, regions, and
institutions. 'wbids' enables users to download, process and work with IDS
series across multiple geographies, counterparts, and time periods.
Author: Teal Emery [aut, cre],
Teal Insights [cph],
Christoph Scheuch [aut] ,
Christopher Smith [ctb]
Maintainer: Teal Emery <lte@tealinsights.com>
Diff between wbids versions 1.1.1 dated 2025-11-11 and 1.1.2 dated 2025-11-27
DESCRIPTION | 11 LICENSE | 4 MD5 | 101 NAMESPACE | 48 NEWS.md | 4 R/global-variables.R | 24 R/ids_bulk.R | 580 +- R/ids_bulk_files.R | 80 R/ids_bulk_series.R | 84 R/ids_get.R | 1082 ++-- R/ids_get_ed.R |only R/ids_list_counterparts.R | 58 R/ids_list_entities.R | 130 R/ids_list_series.R | 56 R/ids_list_series_topics.R | 48 R/perform_request.R | 208 R/read_bulk_info.R | 42 R/sysdata.R | 54 R/wbids-package.R | 27 README.md | 336 - build/vignette.rds |binary inst/doc/data-model.R | 94 inst/doc/data-model.html | 6150 ++++++++++++++------------- inst/doc/data-model.qmd | 250 - man/counterparts.Rd | 32 man/entities.Rd | 32 man/ids_bulk.Rd | 116 man/ids_bulk_files.Rd | 58 man/ids_bulk_series.Rd | 68 man/ids_get.Rd | 288 - man/ids_get_ed.Rd |only man/ids_list_counterparts.Rd | 66 man/ids_list_entities.Rd | 88 man/ids_list_geographies.Rd | 90 man/ids_list_series.Rd | 64 man/ids_list_series_topics.Rd | 56 man/read_bulk_info.Rd | 32 man/series.Rd | 32 man/series_topics.Rd | 32 man/wbids-package.Rd | 70 tests/testthat.R | 24 tests/testthat/test-ids_bulk.R | 808 +-- tests/testthat/test-ids_bulk_files.R | 30 tests/testthat/test-ids_bulk_series.R | 36 tests/testthat/test-ids_get.R | 1292 ++--- tests/testthat/test-ids_get_ed.R |only tests/testthat/test-ids_list_counterparts.R | 20 tests/testthat/test-ids_list_entities.R | 48 tests/testthat/test-ids_list_series.R | 18 tests/testthat/test-ids_list_series_topics.R | 16 tests/testthat/test-perform_request.R | 230 - tests/testthat/test-read_bulk_info.R | 28 vignettes/data-model.qmd | 250 - 53 files changed, 6866 insertions(+), 6529 deletions(-)
Title: Green Index Quantification, Analysis and Visualization
Description: Quantification, analysis, and visualization of urban greenness within city networks using data from 'OpenStreetMap' <https://www.openstreetmap.org>.
Author: Sachit Mahajan [aut, cre]
Maintainer: Sachit Mahajan <sachitmahajan90@gmail.com>
Diff between greenR versions 0.0.1.4 dated 2025-09-08 and 0.0.1.5 dated 2025-11-27
DESCRIPTION | 12 +-- MD5 | 16 ++-- NAMESPACE | 70 ++++++++++++++++++++ R/analyze_and_visualize_uhi.R |only build/vignette.rds |binary inst/doc/introduction.R | 44 +++++++++++++ inst/doc/introduction.Rmd | 76 +++++++++++++++++++++- inst/doc/introduction.html | 131 +++++++++++++++++++++++++++++++-------- man/analyze_and_visualize_uhi.Rd |only vignettes/introduction.Rmd | 76 +++++++++++++++++++++- 10 files changed, 380 insertions(+), 45 deletions(-)
Title: Tools for Outbreak Investigation/Infectious Disease Surveillance
Description: Create epicurves, epigantt charts, and diverging bar charts
using 'ggplot2'. Prepare data for visualisation or other reporting for
infectious disease surveillance and outbreak investigation (time
series data). Includes tidy functions to solve date based
transformations for common reporting tasks, like (A) seasonal date
alignment for respiratory disease surveillance, (B) date-based case
binning based on specified time intervals like isoweek, epiweek, month
and more, (C) automated detection and marking of the new year based on
the date/datetime axis of the 'ggplot2', (D) labelling of the last
value of a time-series. An introduction on how to use epicurves can
be found on the US CDC website (2012,
<https://www.cdc.gov/training/quicklearns/epimode/index.html>).
Author: Alexander Bartel [aut, cre]
Maintainer: Alexander Bartel <alexander.bartel@fu-berlin.de>
Diff between ggsurveillance versions 0.5.1 dated 2025-07-02 and 0.5.2 dated 2025-11-27
DESCRIPTION | 8 MD5 | 115 ++++----- NEWS.md | 14 - R/align_dates_seasonal.R | 12 R/bin_by_date.R | 5 R/create_agegroups.R | 52 ++-- R/geom_bar_range.R | 7 R/geom_epicurve.R | 5 R/ggplot_theme_helpers.R | 3 R/guide_axis_nested_date.R | 15 - R/label.R | 41 ++- R/scale_cases_5er.R | 30 +- R/stat_last_value.R | 30 +- R/themes.R | 31 -- README.md | 6 build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/Epicurves_with_ggsurveillance.html | 7 inst/doc/Epigantt_with_ggsurveillance.html | 9 inst/doc/align_dates_seasonal.html | 5 man/align_dates_seasonal.Rd | 4 man/create_agegroups.Rd | 14 - man/geom_bar_diverging.Rd | 6 man/geom_col_range.Rd | 6 man/geom_epicurve.Rd | 13 - man/geom_epigantt.Rd | 6 man/label_power10.Rd | 6 man/scale_y_cases_5er.Rd | 4 man/stat_last_value.Rd | 6 tests/testthat/_snaps/geom_bar_diverging/1-geom-bar-diverging-basic-horizontal.svg | 24 - tests/testthat/_snaps/geom_bar_diverging/1-geom-bar-diverging-basic-vertical.svg | 24 - tests/testthat/_snaps/geom_bar_diverging/1-geom-bar-diverging-proportion.svg | 24 - tests/testthat/_snaps/geom_bar_diverging/4-complex-diverging-plot.svg | 80 +++--- tests/testthat/_snaps/geom_epicurve/1-geom-epicurve-basic-date.svg | 44 +-- tests/testthat/_snaps/geom_epicurve/1-geom-epicurve-basic-week.svg |only tests/testthat/_snaps/geom_epicurve/2-geom-epicurve-date-resolutionna.svg | 4 tests/testthat/_snaps/geom_epicurve/8-stat-bin-date-epiyear.svg | 4 tests/testthat/_snaps/geom_epicurve/8-stat-bin-date-isoyear.svg | 4 tests/testthat/_snaps/geom_epicurve/8-stat-bin-date-year.svg | 4 tests/testthat/_snaps/geom_epigantt/3-geom-epigantt-full-flip-aes.svg | 2 tests/testthat/_snaps/geom_epigantt/3-geom-epigantt-full.svg | 2 tests/testthat/_snaps/label_power10 |only tests/testthat/_snaps/stat_last_value/2-geom-text-last-value-basic.svg | 2 tests/testthat/_snaps/stat_last_value/2-geom-text-last-value-label.svg |only tests/testthat/_snaps/stat_last_value/2-geom-text-last-value-labeller.svg | 2 tests/testthat/_snaps/stat_last_value/2-geom-text-last-value-percent.svg | 2 tests/testthat/_snaps/stat_last_value/3-geom-label-last-value-basic.svg | 4 tests/testthat/_snaps/stat_last_value/3-geom-label-last-value-nudge.svg | 4 tests/testthat/_snaps/stat_last_value/4-geom-text-last-value-repel-labeller.svg |only tests/testthat/_snaps/stat_last_value/4-geom-text-last-value-repel-min-segment.svg | 6 tests/testthat/_snaps/stat_last_value/5-geom-label-last-value-repel-basic.svg | 4 tests/testthat/_snaps/stat_last_value/5-geom-label-last-value-repel-custom.svg | 4 tests/testthat/_snaps/stat_last_value/6-stat-last-value-abs-nudge-date.svg | 2 tests/testthat/_snaps/stat_last_value/6-stat-last-value-abs-nudge-datetime.svg | 4 tests/testthat/_snaps/stat_last_value/7-stat-last-value-na-at-end.svg | 4 tests/testthat/test-create_agegroups.R | 16 + tests/testthat/test-geom_epicurve.R | 27 +- tests/testthat/test-label_power10.R | 126 ++++++++++ tests/testthat/test-stat_last_value.R | 28 ++ 59 files changed, 599 insertions(+), 313 deletions(-)
More information about ggsurveillance at CRAN
Permanent link
Title: Cross-Validation for Multi-Population Mortality Models
Description: Implementation of cross-validation method for testing the forecasting accuracy of several multi-population mortality models. The family of multi-population includes several multi-population mortality models proposed through the actuarial and demography literature. The package includes functions for fitting and forecast the mortality rates of several populations. Additionally, we include functions for testing the forecasting accuracy of different multi-population models.
References, <https://journal.r-project.org/articles/RJ-2025-018/>.
Atance, D., Debon, A., and Navarro, E. (2020) <doi:10.3390/math8091550>.
Bergmeir, C. & Benitez, J.M. (2012) <doi:10.1016/j.ins.2011.12.028>.
Debon, A., Montes, F., & Martinez-Ruiz, F. (2011) <doi:10.1007/s13385-011-0043-z>.
Lee, R.D. & Carter, L.R. (1992) <doi:10.1080/01621459.1992.10475265>.
Russolillo, M., Giordano, G., & Haberman, S. (2011) <doi:10.1080/03461231003611933>.
Santolino, M. (2023) <d [...truncated...]
Author: David Atance [aut, cre] ,
Ana Debon [aut]
Maintainer: David Atance <david.atance@uah.es>
Diff between CvmortalityMult versions 1.1.0 dated 2025-05-09 and 1.1.1 dated 2025-11-27
DESCRIPTION | 10 MD5 | 12 R/fitLCmulti.R | 2 R/multipopulation_cv.R | 11 README.md | 2 man/fitLCmulti.Rd | 2 man/multipopulation_cv.Rd | 687 +++++++++++++++++++++++----------------------- 7 files changed, 367 insertions(+), 359 deletions(-)
More information about CvmortalityMult at CRAN
Permanent link
Title: Generalized Kumaraswamy Regression Models for Bounded Data
Description: Implements regression models for bounded continuous data in the open interval (0,1) using the five-parameter Generalized Kumaraswamy distribution. Supports modeling all distribution parameters (alpha, beta, gamma, delta, lambda) as functions of predictors through various link functions. Provides efficient maximum likelihood estimation via Template Model Builder ('TMB'), offering comprehensive diagnostics, model comparison tools, and simulation methods. Particularly useful for analyzing proportions, rates, indices, and other bounded response data with complex distributional features not adequately captured by simpler models.
Author: Jose Evandeilton Lopes [aut, cre]
Maintainer: Jose Evandeilton Lopes <evandeilton@gmail.com>
Diff between gkwreg versions 2.1.1 dated 2025-11-15 and 2.1.6 dated 2025-11-27
gkwreg-2.1.1/gkwreg/src/gkwreg-predict-resid.cpp |only gkwreg-2.1.6/gkwreg/DESCRIPTION | 6 gkwreg-2.1.6/gkwreg/MD5 | 58 gkwreg-2.1.6/gkwreg/NAMESPACE | 4 gkwreg-2.1.6/gkwreg/NEWS.md | 13 gkwreg-2.1.6/gkwreg/R/RcppExports.R | 2 gkwreg-2.1.6/gkwreg/R/gkwreg-compile-tmb.R |only gkwreg-2.1.6/gkwreg/R/gkwreg-plot.R | 19 gkwreg-2.1.6/gkwreg/R/zzz.R | 467 ---- gkwreg-2.1.6/gkwreg/README.md | 294 +- gkwreg-2.1.6/gkwreg/inst/doc/gkwreg-vs-betareg.html | 50 gkwreg-2.1.6/gkwreg/inst/paper/paper.log | 48 gkwreg-2.1.6/gkwreg/inst/paper/paper.md | 60 gkwreg-2.1.6/gkwreg/inst/paper/paper.pdf |binary gkwreg-2.1.6/gkwreg/inst/tmb/bkwreg.cpp | 572 ----- gkwreg-2.1.6/gkwreg/inst/tmb/ekwreg.cpp | 566 ----- gkwreg-2.1.6/gkwreg/inst/tmb/gkwbetareg.cpp | 478 ---- gkwreg-2.1.6/gkwreg/inst/tmb/gkwreg.cpp | 1095 ----------- gkwreg-2.1.6/gkwreg/inst/tmb/kkwreg.cpp | 603 ------ gkwreg-2.1.6/gkwreg/inst/tmb/kwreg.cpp | 2 gkwreg-2.1.6/gkwreg/inst/tmb/mcreg.cpp | 549 ----- gkwreg-2.1.6/gkwreg/man/clean_tmb_cache.Rd |only gkwreg-2.1.6/gkwreg/man/dot-check_and_compile_TMB_code.Rd | 37 gkwreg-2.1.6/gkwreg/man/dot-compile_model.Rd |only gkwreg-2.1.6/gkwreg/man/dot-get_cache_dir.Rd |only gkwreg-2.1.6/gkwreg/man/dot-is_dll_functional.Rd |only gkwreg-2.1.6/gkwreg/man/dot-load_dll.Rd |only gkwreg-2.1.6/gkwreg/man/list_tmb_models.Rd |only gkwreg-2.1.6/gkwreg/man/precompile_tmb_models.Rd |only gkwreg-2.1.6/gkwreg/src/Makevars | 6 gkwreg-2.1.6/gkwreg/src/Makevars.win | 12 gkwreg-2.1.6/gkwreg/src/RcppExports.cpp | 8 gkwreg-2.1.6/gkwreg/src/gkwregPredictResid.cpp |only gkwreg-2.1.6/gkwreg/tests/testthat/test-gkwreg-anova-tests.R | 80 gkwreg-2.1.6/gkwreg/tests/testthat/test-gkwreg-plot-tests.R | 36 35 files changed, 451 insertions(+), 4614 deletions(-)
Title: General Equilibrium Modeling
Description: Some tools for developing general equilibrium models and some general equilibrium models. These models can be used for teaching economic theory and are built by the methods of new structural economics (see LI Wu, 2019, ISBN: 9787521804225, General Equilibrium and Structural Dynamics: Perspectives of New Structural Economics. Beijing: Economic Science Press). The model form and mathematical methods can be traced back to J. von Neumann (1945, A Model of General Economic Equilibrium. The Review of Economic Studies, 13. pp. 1-9), J. G. Kemeny, O. Morgenstern and G. L. Thompson (1956, A Generalization of the von Neumann Model of an Expanding Economy, Econometrica, 24, pp. 115-135) et al. By the way, J. G. Kemeny is a co-inventor of the computer language BASIC.
Author: Wu LI [aut, cre]
Maintainer: Wu LI <liwu.shu@qq.com>
Diff between GE versions 0.5.0 dated 2025-06-19 and 0.5.3 dated 2025-11-27
GE-0.5.0/GE/R/gemIntertemporal_EndogenousEquilibriumInterestRate_MoneyVelocity.R |only GE-0.5.0/GE/R/gemOLG_Land_4_3.R |only GE-0.5.0/GE/man/gemIntertemporal_EndogenousEquilibriumInterestRate_MoneyVelocity.Rd |only GE-0.5.0/GE/man/gemOLG_Land_4_3.Rd |only GE-0.5.3/GE/DESCRIPTION | 10 GE-0.5.3/GE/MD5 | 20 GE-0.5.3/GE/NAMESPACE | 2 GE-0.5.3/GE/R/ge_tidy.R | 11 GE-0.5.3/GE/R/gemIntertemporal_EndogenousEquilibriumInterestRate.R | 232 +++--- GE-0.5.3/GE/R/gemIntertemporal_EndogenousEquilibriumInterestRate__ForeignExchangeRate.R | 360 ++-------- GE-0.5.3/GE/R/sdm2.R | 14 GE-0.5.3/GE/man/gemIntertemporal_EndogenousEquilibriumInterestRate.Rd | 233 +++--- GE-0.5.3/GE/man/gemIntertemporal_EndogenousEquilibriumInterestRate_ForeignExchangeRate.Rd | 356 ++------- 13 files changed, 470 insertions(+), 768 deletions(-)
Title: Detecting Influence Paths with Information Theory
Description: Traces information spread through interactions between features, utilising information theory measures and a higher-order generalisation of the concept of widest paths in graphs.
In particular, 'vistla' can be used to better understand the results of high-throughput biomedical experiments, by organising the effects of the investigated intervention in a tree-like hierarchy from direct to indirect ones, following the plausible information relay circuits.
Due to its higher-order nature, 'vistla' can handle multi-modality and assign multiple roles to a single feature.
Author: Miron B. Kursa [aut, cre]
Maintainer: Miron B. Kursa <m@mbq.me>
Diff between vistla versions 2.1.1 dated 2025-02-19 and 2.1.2 dated 2025-11-27
DESCRIPTION | 9 +++++---- MD5 | 14 +++++++------- build/vignette.rds |binary inst/NEWS | 4 ++++ inst/doc/walkthrough.pdf |binary src/ensemble.h | 2 +- src/interface.h | 2 +- src/vistla.c | 6 ++++++ 8 files changed, 24 insertions(+), 13 deletions(-)
Title: Topic Modelling in Embedding Spaces
Description: Find topics in texts which are semantically embedded using techniques like word2vec or Glove.
This topic modelling technique models each word with a categorical distribution whose natural parameter is the inner product between a word embedding and an embedding of its assigned topic.
The techniques are explained in detail in the paper 'Topic Modeling in Embedding Spaces' by Adji B. Dieng, Francisco J. R. Ruiz, David M. Blei (2019), available at <doi:10.48550/arXiv.1907.04907>.
Author: Jan Wijffels [aut, cre, cph] ,
BNOSAC [cph] ,
Adji B. Dieng [ctb, cph] ,
Francisco J. R. Ruiz [ctb, cph] ,
David M. Blei [ctb, cph]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between topicmodels.etm versions 0.1.0 dated 2021-11-08 and 0.1.1 dated 2025-11-27
DESCRIPTION | 13 +++++++------ MD5 | 12 ++++++------ NEWS.md | 8 ++++++++ R/ETM.R | 43 +++++++++++++++++++++++++++++++------------ man/ETM.Rd | 28 ++++++++++++++++++---------- man/plot.ETM.Rd | 9 ++++++--- man/summary.ETM.Rd | 6 +++++- 7 files changed, 81 insertions(+), 38 deletions(-)
More information about topicmodels.etm at CRAN
Permanent link
Title: Command Line Interface Plotting
Description: The 'plotcli' package provides terminal-based plotting in R.
It supports colored scatter plots, line plots, bar plots, boxplots,
histograms, density plots, and more. The 'ggplotcli()' function is a
universal converter that renders any 'ggplot2' plot in the terminal
using Unicode Braille characters or ASCII. Features include support for
15+ geom types, faceting (facet_wrap/facet_grid), automatic theme
detection, legends, optimized color mapping, and multiple canvas types.
Author: Claas Heuer [aut, cre]
Maintainer: Claas Heuer <claasheuer@gmail.com>
Diff between plotcli versions 0.1.0 dated 2024-04-24 and 0.2.0 dated 2025-11-27
DESCRIPTION | 22 +- MD5 | 90 +++++++-- NAMESPACE | 33 ++- NEWS.md |only R/canvas.r |only R/geom_registry.r |only R/ggplotcli.r | 241 +++++++++++++++----------- R/ggplotcli_helpers.r |only R/helper_functions.r | 103 +++++++++++ R/plotcli.r | 232 ++++++++++--------------- README.md | 167 ++++++++++++------ build/vignette.rds |binary inst/doc/ggplotcli.R |only inst/doc/ggplotcli.Rmd |only inst/doc/ggplotcli.html |only inst/doc/ggplotli.R | 97 +++++++++- inst/doc/ggplotli.Rmd | 148 +++++++++++++++- inst/doc/ggplotli.html | 376 ++++++++++++++++++++++++++++++++--------- inst/doc/plotcli_class.Rmd | 4 inst/doc/plotcli_class.html | 77 ++++---- inst/doc/plotcli_wrappers.Rmd | 4 inst/doc/plotcli_wrappers.html | 95 +++++----- man/AsciiCanvas.Rd |only man/BlockCanvas.Rd |only man/BrailleCanvas.Rd |only man/Canvas.Rd |only man/GeomRegistry.Rd |only man/add_legend_to_output.Rd |only man/braille_dot_bit.Rd |only man/braille_set_dot.Rd |only man/build_plot_output.Rd |only man/build_plot_output_v2.Rd |only man/color_to_term.Rd |only man/create_canvas.Rd |only man/create_panel_scales.Rd |only man/create_scales.Rd |only man/dot-geom_registry.Rd |only man/draw_border.Rd |only man/draw_grid.Rd |only man/extract_legend_info.Rd |only man/extract_plot_labels.Rd |only man/extract_plot_style.Rd |only man/format_axis_label.Rd |only man/geom_area_handler.Rd |only man/geom_bar_handler.Rd |only man/geom_boxplot_handler.Rd |only man/geom_density_handler.Rd |only man/geom_histogram_handler.Rd |only man/geom_hline_handler.Rd |only man/geom_line_handler.Rd |only man/geom_path_handler.Rd |only man/geom_point_handler.Rd |only man/geom_rect_handler.Rd |only man/geom_segment_handler.Rd |only man/geom_smooth_handler.Rd |only man/geom_text_handler.Rd |only man/geom_vline_handler.Rd |only man/get_color_hue.Rd |only man/get_facet_info.Rd |only man/get_geom_handler.Rd |only man/ggplotcli.Rd | 76 +++++++- man/init_color_mapping.Rd |only man/is_geom_registered.Rd |only man/list_registered_geoms.Rd |only man/pixel_to_braille.Rd |only man/register_geom.Rd |only man/render_faceted_plot.Rd |only man/render_single_panel.Rd |only man/safe_aes_name.Rd |only vignettes/ggplotcli.Rmd |only vignettes/ggplotli.Rmd | 148 +++++++++++++++- vignettes/plotcli_class.Rmd | 4 vignettes/plotcli_wrappers.Rmd | 4 73 files changed, 1401 insertions(+), 520 deletions(-)
Title: Feature Selection for 'mlr3'
Description: Feature selection package of the 'mlr3' ecosystem. It selects
the optimal feature set for any 'mlr3' learner. The package works with
several optimization algorithms e.g. Random Search, Recursive Feature
Elimination, and Genetic Search. Moreover, it can automatically
optimize learners and estimate the performance of optimized feature
sets with nested resampling.
Author: Marc Becker [aut, cre] ,
Patrick Schratz [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
John Zobolas [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3fselect versions 1.4.0 dated 2025-07-31 and 1.5.0 dated 2025-11-27
DESCRIPTION | 12 +- MD5 | 44 ++++---- NAMESPACE | 1 NEWS.md | 5 R/EnsembleFSResult.R | 1 R/ObjectiveFSelectAsync.R | 10 + R/ObjectiveFSelectBatch.R | 10 + R/faggregate.R |only R/zzz.R | 8 - README.md | 21 +++- inst/testthat/helper_misc.R | 12 +- man/ensemble_fs_result.Rd | 2 man/faggregate.Rd |only man/mlr_fselectors_genetic_search.Rd | 2 tests/testthat/test_ArchiveAsyncFSelect.R | 50 +-------- tests/testthat/test_ArchiveAsyncFSelectFrozen.R | 4 tests/testthat/test_AutoFSelector.R | 2 tests/testthat/test_CallbackAsyncFSelect.R | 85 +++------------- tests/testthat/test_FSelectInstanceAsyncMultiCrit.R | 25 ---- tests/testthat/test_FSelectInstanceAsyncSingleCrit.R | 21 ---- tests/testthat/test_ObjectiveFSelect.R | 82 +++++++++++++++- tests/testthat/test_ObjectiveFSelectAsync.R | 97 +++++++++++++++++++ tests/testthat/test_auto_fselector.R | 1 tests/testthat/test_mlr_callbacks.R | 5 24 files changed, 299 insertions(+), 201 deletions(-)
Title: API Client for the 'ClimMob' Platform
Description: API client for 'ClimMob', an open source software for decentralized
large-N trials with the 'tricot' approach <https://climmob.net/>.
Developed by van Etten et al. (2019) <doi:10.1017/S0014479716000739>, it turns the
research paradigm on its head; instead of a few researchers designing complicated
trials to compare several technologies in search of the best solutions for the
target environment, it enables many participants to carry out reasonably simple
experiments that taken together can offer even more information. 'ClimMobTools'
enables project managers to deep explore and analyse their 'ClimMob' data in R.
Author: Kaue de Sousa [aut, cre] ,
Jacob van Etten [aut] ,
Brandon Madriz [aut]
Maintainer: Kaue de Sousa <desousa.kaue@gmail.com>
Diff between ClimMobTools versions 1.8 dated 2025-11-15 and 1.8.2 dated 2025-11-27
DESCRIPTION | 6 +-- MD5 | 10 ++--- NEWS.md | 28 +++++++++++++- R/exportMeasuredTraits.R | 69 ++++++++++++++++++++++++----------- R/getProjectsCM.R | 86 ++++++++++++++++++++++++++------------------ man/exportMeasuredTraits.Rd | 9 +++- 6 files changed, 142 insertions(+), 66 deletions(-)
Title: Create Non-Confidential Multi-Resolution Grids
Description: The need for anonymization of individual survey responses often leads to many suppressed grid cells in a regular grid. Here we provide functionality for creating multi-resolution gridded data, respecting the confidentiality rules, such as a minimum number of units and dominance by one or more units for each grid cell. The functions also include the possibility for contextual suppression of data. For more details see Skoien et al. (2025) <doi:10.48550/arXiv.2410.17601>.
Author: Jon Olav Skoien [aut, cre],
Nicolas Lampach [aut]
Maintainer: Jon Olav Skoien <jon.skoien@gmail.com>
Diff between MRG versions 0.3.10 dated 2025-07-11 and 0.3.21 dated 2025-11-27
DESCRIPTION | 18 +-- MD5 | 58 ++++++------ NAMESPACE | 9 + R/MRGmerge.R | 148 ++++++++++++++++++++++++-------- R/MRGoverlap.R | 30 ++---- R/MRGplot.R | 12 +- R/MRGpostProcess.R | 2 R/confid.R | 2 R/createMRGobject.R | 42 +++++++-- R/fssgeo.R | 21 +++- R/gridData.R | 44 +++++---- R/inspireID.R |only R/multiResGrid.R | 38 +++----- R/remSmall.R | 195 +++++++++++++++++++++---------------------- R/roxygen_eval.R | 37 ++++++-- R/zzz.R |only build/vignette.rds |binary data/ifs_dk.rda |binary inst/doc/MRG.html | 18 +-- inst/ex/dkb.rda |only man/MRGmerge.Rd | 58 ++++++++++++ man/MRGoverlap.Rd | 33 +++---- man/MRGplot.Rd | 12 +- man/MRGpostProcess.Rd | 2 man/createMRGobject.Rd | 30 +++++- man/fssgeo.Rd | 4 man/gridData.Rd | 21 ++-- man/inspireID.Rd |only man/multiResGrid.Rd | 29 +++--- man/remSmall.Rd | 177 +++++++++++++++++++-------------------- tests/multiResGrid.R | 14 ++- tests/multiResGrid.Rout.save | 25 ++++- 32 files changed, 663 insertions(+), 416 deletions(-)
Title: Distributed Representations of Sentences, Documents and Topics
Description: Learn vector representations of sentences, paragraphs or documents by using the 'Paragraph Vector' algorithms,
namely the distributed bag of words ('PV-DBOW') and the distributed memory ('PV-DM') model.
The techniques in the package are detailed in the paper "Distributed Representations of Sentences and Documents" by Mikolov et al. (2014), available at <doi:10.48550/arXiv.1405.4053>.
The package also provides an implementation to cluster documents based on these embedding using a technique called top2vec.
Top2vec finds clusters in text documents by combining techniques to embed documents and words and density-based clustering.
It does this by embedding documents in the semantic space as defined by the 'doc2vec' algorithm. Next it maps
these document embeddings to a lower-dimensional space using the 'Uniform Manifold Approximation and Projection' (UMAP) clustering algorithm
and finds dense areas in that space using a 'Hierarchical Density-Based Clustering' technique (HDBSCAN). The [...truncated...]
Author: Jan Wijffels [aut, cre, cph] ,
BNOSAC [cph] ,
hiyijian [ctb, cph]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between doc2vec versions 0.2.0 dated 2021-03-27 and 0.2.2 dated 2025-11-27
DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++-------- NEWS.md | 10 ++++++++++ R/paragraph2vec.R | 16 +++++++++++++++- R/top2vec.R | 2 -- README.md | 10 ++++++++-- man/paragraph2vec.Rd | 3 ++- man/top2vec.Rd | 2 -- src/Makevars | 1 - 9 files changed, 49 insertions(+), 23 deletions(-)
Title: A Toolbox for Clinical Significance Analyses in Intervention
Studies
Description: A clinical significance analysis can be used to determine if an
intervention has a meaningful or practical effect for patients. You provide
a tidy data set plus a few more metrics and this package will take care of
it to make your results publication ready. Accompanying package to
Claus et al. <doi:10.18637/jss.v111.i01>.
Author: Benedikt Claus [aut, cre]
Maintainer: Benedikt Claus <benediktclaus@outlook.com>
Diff between clinicalsignificance versions 2.1.0 dated 2024-12-02 and 3.0.0 dated 2025-11-27
DESCRIPTION | 25 - MD5 | 91 ++-- NEWS.md | 13 R/create_summary_table.R | 216 +++++++---- R/cs_anchor.R | 417 +++++++++++++-------- R/cs_combined.R | 296 +++++++++------ R/cs_distribution.R | 185 +++++---- R/cs_get_summary.R | 20 - R/cs_percentage.R | 184 +++++---- R/cs_statistical.R | 188 ++++++--- R/datasets.R | 112 +++++ R/globals.R | 103 ++++- R/package-utils.R | 93 ++++ README.md | 304 +++++++-------- build/vignette.rds |binary data/columbo.rda |only data/garden_club.rda |only data/garden_club_sensitive.rda |only data/trackmania.rda |only inst/doc/anchor-based-approach.R | 104 +---- inst/doc/anchor-based-approach.Rmd | 198 ++++------ inst/doc/anchor-based-approach.html | 586 ++++++++++++------------------ inst/doc/combined-approach.R | 128 +----- inst/doc/combined-approach.Rmd | 218 +++-------- inst/doc/combined-approach.html | 582 ++++++++++------------------- inst/doc/distribution-based-approach.R | 118 +----- inst/doc/distribution-based-approach.Rmd | 189 +++------ inst/doc/distribution-based-approach.html | 520 +++++++++----------------- inst/doc/percentage-change-approach.R | 111 +---- inst/doc/percentage-change-approach.Rmd | 179 ++------- inst/doc/percentage-change-approach.html | 458 +++++++---------------- inst/doc/statistical-approach.R | 98 +---- inst/doc/statistical-approach.Rmd | 179 +++------ inst/doc/statistical-approach.html | 492 +++++++++---------------- man/columbo.Rd |only man/figures/README-example-1.png |only man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-8-1.png |binary man/figures/README-unnamed-chunk-9-1.png |binary man/figures/logo.png |binary man/garden_club.Rd |only man/garden_club_sensitive.Rd |only man/trackmania.Rd |only tests/testthat/_snaps/cs_combined.md | 368 +++++++++--------- tests/testthat/_snaps/cs_distribution.md | 314 ++++++++-------- tests/testthat/_snaps/cs_percentage.md | 81 ++-- vignettes/anchor-based-approach.Rmd | 198 ++++------ vignettes/combined-approach.Rmd | 218 +++-------- vignettes/distribution-based-approach.Rmd | 189 +++------ vignettes/percentage-change-approach.Rmd | 179 ++------- vignettes/statistical-approach.Rmd | 179 +++------ 51 files changed, 3604 insertions(+), 4529 deletions(-)
More information about clinicalsignificance at CRAN
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Title: Bayesian Regression for Dynamic Treatment Regimes
Description: Methods to estimate optimal dynamic treatment regimes using Bayesian
likelihood-based regression approach as described in
Yu, W., & Bondell, H. D. (2023) <doi:10.1093/jrsssb/qkad016>
Uses backward induction and dynamic programming theory for computing
expected values. Offers options for future parallel computing.
Author: Jeremy Lim [aut],
Weichang Yu [aut, cre]
Maintainer: Weichang Yu <weichang.yu@unimelb.edu.au>
Diff between BayesRegDTR versions 1.1.1 dated 2025-10-26 and 1.1.2 dated 2025-11-27
DESCRIPTION | 16 ++++++++-------- MD5 | 4 ++-- NEWS.md | 4 ++++ 3 files changed, 14 insertions(+), 10 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-08-28 1.1.2
2024-06-05 1.1.1
2024-04-25 1.1.0
2023-12-13 1.0.5
2023-11-10 1.0.4
2023-07-20 1.0.3
2023-07-07 1.0.2
2023-06-29 1.0.1
2023-06-19 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-19 0.2.2
2022-02-28 0.1.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-12-14 0.94.1
2017-02-03 0.94
2016-11-10 0.92
2016-08-09 0.90
2016-05-26 0.88
2015-02-18 0.86
2013-12-20 0.84.1
2013-10-25 0.84
2012-12-10 0.81
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-19 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-16 1.0.1
2022-08-24 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-10 0.1.1
2019-10-07 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-11-25 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-11-25 0.2.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-14 1.2.2
2021-03-31 1.2.1
2020-11-19 1.2.0
2020-07-26 1.1.1
2020-05-01 1.1.0
2019-09-27 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-09-13 1.0.0
2024-09-13 0.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-02-12 1.1
2015-02-05 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-10 1.1.0
2021-08-17 1.0.0
2015-05-21 0.3-1
2013-06-14 0.2-1
2011-11-02 0.1-7
2011-05-28 0.1-6
2011-03-22 0.1-5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-13 1.4.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-02-27 2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-12-14 1.16
2024-01-29 1.15
2022-04-22 1.12
2022-01-21 1.11
2022-01-11 1.10
2020-05-22 1.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-03 1.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-27 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-01-18 1.0.0.10
2022-08-19 1.0.0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-02-20 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-05-04 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-02 2.1.0
2020-03-16 1.0.0
Title: A 'Linter' for R Code
Description: Checks adherence to a given style, syntax errors and possible
semantic issues. Supports on the fly checking of R code edited with
'RStudio IDE', 'Emacs', 'Vim', 'Sublime Text', 'Atom' and 'Visual
Studio Code'.
Author: Jim Hester [aut],
Florent Angly [aut] ,
Russ Hyde [aut],
Michael Chirico [aut, cre] ,
Kun Ren [aut],
Alexander Rosenstock [aut] ,
Indrajeet Patil [aut] ,
Hugo Gruson [aut]
Maintainer: Michael Chirico <michaelchirico4@gmail.com>
Diff between lintr versions 3.2.0 dated 2025-02-12 and 3.3.0-1 dated 2025-11-27
lintr-3.2.0/lintr/tests/testthat/test-make_linter_from_regex.R |only lintr-3.2.0/lintr/tests/testthat/test-normalize_exclusions.R |only lintr-3.2.0/lintr/tests/testthat/test-parse_exclusions.R |only lintr-3.3.0-1/lintr/DESCRIPTION | 50 - lintr-3.3.0-1/lintr/MD5 | 497 +++++----- lintr-3.3.0-1/lintr/NAMESPACE | 12 lintr-3.3.0-1/lintr/NEWS.md | 161 ++- lintr-3.3.0-1/lintr/R/T_and_F_symbol_linter.R | 10 lintr-3.3.0-1/lintr/R/absolute_path_linter.R | 2 lintr-3.3.0-1/lintr/R/all_equal_linter.R |only lintr-3.3.0-1/lintr/R/any_duplicated_linter.R | 109 +- lintr-3.3.0-1/lintr/R/any_is_na_linter.R | 2 lintr-3.3.0-1/lintr/R/assignment_linter.R | 83 - lintr-3.3.0-1/lintr/R/backport_linter.R | 34 lintr-3.3.0-1/lintr/R/boolean_arithmetic_linter.R | 18 lintr-3.3.0-1/lintr/R/brace_linter.R | 53 - lintr-3.3.0-1/lintr/R/coalesce_linter.R |only lintr-3.3.0-1/lintr/R/comparison_negation_linter.R | 6 lintr-3.3.0-1/lintr/R/condition_call_linter.R | 16 lintr-3.3.0-1/lintr/R/condition_message_linter.R | 2 lintr-3.3.0-1/lintr/R/conjunct_test_linter.R | 5 lintr-3.3.0-1/lintr/R/consecutive_assertion_linter.R | 2 lintr-3.3.0-1/lintr/R/cyclocomp_linter.R | 23 lintr-3.3.0-1/lintr/R/declared_functions.R | 29 lintr-3.3.0-1/lintr/R/download_file_linter.R |only lintr-3.3.0-1/lintr/R/empty_assignment_linter.R | 2 lintr-3.3.0-1/lintr/R/exclude.R | 33 lintr-3.3.0-1/lintr/R/expect_comparison_linter.R | 2 lintr-3.3.0-1/lintr/R/expect_length_linter.R | 4 lintr-3.3.0-1/lintr/R/expect_lint.R | 174 ++- lintr-3.3.0-1/lintr/R/expect_true_false_linter.R | 10 lintr-3.3.0-1/lintr/R/extract.R | 16 lintr-3.3.0-1/lintr/R/fixed_regex_linter.R | 4 lintr-3.3.0-1/lintr/R/function_left_parentheses_linter.R | 3 lintr-3.3.0-1/lintr/R/get_source_expressions.R | 173 ++- lintr-3.3.0-1/lintr/R/ids_with_token.R | 10 lintr-3.3.0-1/lintr/R/if_switch_linter.R | 18 lintr-3.3.0-1/lintr/R/ifelse_censor_linter.R | 11 lintr-3.3.0-1/lintr/R/implicit_assignment_linter.R | 26 lintr-3.3.0-1/lintr/R/implicit_integer_linter.R | 5 lintr-3.3.0-1/lintr/R/indentation_linter.R | 145 +- lintr-3.3.0-1/lintr/R/is_lint_level.R | 2 lintr-3.3.0-1/lintr/R/length_test_linter.R | 39 lintr-3.3.0-1/lintr/R/lengths_linter.R | 2 lintr-3.3.0-1/lintr/R/library_call_linter.R | 15 lintr-3.3.0-1/lintr/R/line_length_linter.R | 97 + lintr-3.3.0-1/lintr/R/lint.R | 263 +++-- lintr-3.3.0-1/lintr/R/linter_tags.R | 20 lintr-3.3.0-1/lintr/R/lintr-deprecated.R | 142 -- lintr-3.3.0-1/lintr/R/lintr-package.R | 9 lintr-3.3.0-1/lintr/R/list2df_linter.R |only lintr-3.3.0-1/lintr/R/literal_coercion_linter.R | 3 lintr-3.3.0-1/lintr/R/make_linter_from_regex.R | 4 lintr-3.3.0-1/lintr/R/matrix_apply_linter.R | 23 lintr-3.3.0-1/lintr/R/methods.R | 64 - lintr-3.3.0-1/lintr/R/missing_argument_linter.R | 7 lintr-3.3.0-1/lintr/R/nzchar_linter.R | 7 lintr-3.3.0-1/lintr/R/object_usage_linter.R | 140 ++ lintr-3.3.0-1/lintr/R/outer_negation_linter.R | 2 lintr-3.3.0-1/lintr/R/package_hooks_linter.R | 20 lintr-3.3.0-1/lintr/R/paren_body_linter.R | 1 lintr-3.3.0-1/lintr/R/paste_linter.R | 8 lintr-3.3.0-1/lintr/R/path_utils.R | 18 lintr-3.3.0-1/lintr/R/pipe_consistency_linter.R | 29 lintr-3.3.0-1/lintr/R/pipe_return_linter.R | 17 lintr-3.3.0-1/lintr/R/redundant_equals_linter.R | 2 lintr-3.3.0-1/lintr/R/regex_subset_linter.R | 53 - lintr-3.3.0-1/lintr/R/repeat_linter.R | 3 lintr-3.3.0-1/lintr/R/return_linter.R | 4 lintr-3.3.0-1/lintr/R/sample_int_linter.R | 2 lintr-3.3.0-1/lintr/R/scalar_in_linter.R | 12 lintr-3.3.0-1/lintr/R/seq_linter.R | 66 + lintr-3.3.0-1/lintr/R/settings.R | 14 lintr-3.3.0-1/lintr/R/settings_utils.R | 3 lintr-3.3.0-1/lintr/R/shared_constants.R | 58 - lintr-3.3.0-1/lintr/R/sort_linter.R | 37 lintr-3.3.0-1/lintr/R/source_utils.R | 21 lintr-3.3.0-1/lintr/R/sprintf_linter.R | 55 - lintr-3.3.0-1/lintr/R/string_boundary_linter.R | 51 - lintr-3.3.0-1/lintr/R/strings_as_factors_linter.R | 4 lintr-3.3.0-1/lintr/R/terminal_close_linter.R | 2 lintr-3.3.0-1/lintr/R/todo_comment_linter.R | 8 lintr-3.3.0-1/lintr/R/trailing_blank_lines_linter.R | 4 lintr-3.3.0-1/lintr/R/undesirable_function_linter.R | 50 - lintr-3.3.0-1/lintr/R/undesirable_operator_linter.R | 80 + lintr-3.3.0-1/lintr/R/unnecessary_concatenation_linter.R | 2 lintr-3.3.0-1/lintr/R/unnecessary_lambda_linter.R | 17 lintr-3.3.0-1/lintr/R/unnecessary_nesting_linter.R | 31 lintr-3.3.0-1/lintr/R/unnecessary_placeholder_linter.R | 2 lintr-3.3.0-1/lintr/R/unused_import_linter.R | 3 lintr-3.3.0-1/lintr/R/use_lintr.R | 30 lintr-3.3.0-1/lintr/R/utils.R | 83 - lintr-3.3.0-1/lintr/R/vector_logic_linter.R | 4 lintr-3.3.0-1/lintr/R/with.R | 29 lintr-3.3.0-1/lintr/R/with_id.R | 9 lintr-3.3.0-1/lintr/R/xml_utils.R | 22 lintr-3.3.0-1/lintr/R/zzz.R | 27 lintr-3.3.0-1/lintr/README.md | 1 lintr-3.3.0-1/lintr/build/stage23.rdb |binary lintr-3.3.0-1/lintr/build/vignette.rds |binary lintr-3.3.0-1/lintr/inst/CITATION |only lintr-3.3.0-1/lintr/inst/doc/lintr.R | 1 lintr-3.3.0-1/lintr/inst/doc/lintr.Rmd | 9 lintr-3.3.0-1/lintr/inst/doc/lintr.html | 262 ++--- lintr-3.3.0-1/lintr/inst/lintr/linters.csv | 22 lintr-3.3.0-1/lintr/man/absolute_path_linter.Rd | 2 lintr-3.3.0-1/lintr/man/all_equal_linter.Rd |only lintr-3.3.0-1/lintr/man/any_duplicated_linter.Rd | 10 lintr-3.3.0-1/lintr/man/any_is_na_linter.Rd | 2 lintr-3.3.0-1/lintr/man/assignment_linter.Rd | 19 lintr-3.3.0-1/lintr/man/backport_linter.Rd | 16 lintr-3.3.0-1/lintr/man/best_practices_linters.Rd | 2 lintr-3.3.0-1/lintr/man/brace_linter.Rd | 17 lintr-3.3.0-1/lintr/man/coalesce_linter.Rd |only lintr-3.3.0-1/lintr/man/common_mistakes_linters.Rd | 2 lintr-3.3.0-1/lintr/man/condition_message_linter.Rd | 2 lintr-3.3.0-1/lintr/man/conjunct_test_linter.Rd | 2 lintr-3.3.0-1/lintr/man/consecutive_assertion_linter.Rd | 2 lintr-3.3.0-1/lintr/man/consistency_linters.Rd | 1 lintr-3.3.0-1/lintr/man/cyclocomp_linter.Rd | 2 lintr-3.3.0-1/lintr/man/default_linters.Rd | 3 lintr-3.3.0-1/lintr/man/default_settings.Rd | 3 lintr-3.3.0-1/lintr/man/default_undesirable_functions.Rd | 2 lintr-3.3.0-1/lintr/man/deprecated_linters.Rd | 10 lintr-3.3.0-1/lintr/man/download_file_linter.Rd |only lintr-3.3.0-1/lintr/man/efficiency_linters.Rd | 1 lintr-3.3.0-1/lintr/man/exclude.Rd | 7 lintr-3.3.0-1/lintr/man/expect_lint.Rd | 23 lintr-3.3.0-1/lintr/man/get_source_expressions.Rd | 1 lintr-3.3.0-1/lintr/man/gitlab_output.Rd |only lintr-3.3.0-1/lintr/man/ids_with_token.Rd | 6 lintr-3.3.0-1/lintr/man/implicit_assignment_linter.Rd | 19 lintr-3.3.0-1/lintr/man/length_test_linter.Rd | 26 lintr-3.3.0-1/lintr/man/lengths_linter.Rd | 2 lintr-3.3.0-1/lintr/man/library_call_linter.Rd | 2 lintr-3.3.0-1/lintr/man/line_length_linter.Rd | 56 + lintr-3.3.0-1/lintr/man/lint-s3.Rd | 5 lintr-3.3.0-1/lintr/man/lint.Rd | 12 lintr-3.3.0-1/lintr/man/linters.Rd | 21 lintr-3.3.0-1/lintr/man/lintr-deprecated.Rd | 48 lintr-3.3.0-1/lintr/man/lintr-package.Rd | 5 lintr-3.3.0-1/lintr/man/list2df_linter.Rd |only lintr-3.3.0-1/lintr/man/matrix_apply_linter.Rd | 22 lintr-3.3.0-1/lintr/man/normalize_exclusions.Rd | 13 lintr-3.3.0-1/lintr/man/object_usage_linter.Rd | 19 lintr-3.3.0-1/lintr/man/package_hooks_linter.Rd | 14 lintr-3.3.0-1/lintr/man/paste_linter.Rd | 8 lintr-3.3.0-1/lintr/man/pipe_consistency_linter.Rd | 25 lintr-3.3.0-1/lintr/man/pipe_return_linter.Rd | 17 lintr-3.3.0-1/lintr/man/readability_linters.Rd | 2 lintr-3.3.0-1/lintr/man/regex_subset_linter.Rd | 19 lintr-3.3.0-1/lintr/man/repeat_linter.Rd | 3 lintr-3.3.0-1/lintr/man/robustness_linters.Rd | 2 lintr-3.3.0-1/lintr/man/scalar_in_linter.Rd | 5 lintr-3.3.0-1/lintr/man/seq_linter.Rd | 20 lintr-3.3.0-1/lintr/man/sprintf_linter.Rd | 5 lintr-3.3.0-1/lintr/man/string_boundary_linter.Rd | 4 lintr-3.3.0-1/lintr/man/undesirable_function_linter.Rd | 30 lintr-3.3.0-1/lintr/man/undesirable_operator_linter.Rd | 47 lintr-3.3.0-1/lintr/tests/testthat/default_linter_testcode.R | 1 lintr-3.3.0-1/lintr/tests/testthat/dummy_projects/project/mismatched_starts_ends.R | 10 lintr-3.3.0-1/lintr/tests/testthat/dummy_projects/project/one_start_no_end.R | 2 lintr-3.3.0-1/lintr/tests/testthat/helper.R | 7 lintr-3.3.0-1/lintr/tests/testthat/test-Lint-builder.R | 20 lintr-3.3.0-1/lintr/tests/testthat/test-T_and_F_symbol_linter.R | 32 lintr-3.3.0-1/lintr/tests/testthat/test-absolute_path_linter.R | 144 -- lintr-3.3.0-1/lintr/tests/testthat/test-all_equal_linter.R |only lintr-3.3.0-1/lintr/tests/testthat/test-any_duplicated_linter.R | 37 lintr-3.3.0-1/lintr/tests/testthat/test-assignment_linter.R | 159 +-- lintr-3.3.0-1/lintr/tests/testthat/test-backport_linter.R | 20 lintr-3.3.0-1/lintr/tests/testthat/test-boolean_arithmetic_linter.R | 40 lintr-3.3.0-1/lintr/tests/testthat/test-brace_linter.R | 192 ++- lintr-3.3.0-1/lintr/tests/testthat/test-cache.R | 364 ------- lintr-3.3.0-1/lintr/tests/testthat/test-coalesce_linter.R |only lintr-3.3.0-1/lintr/tests/testthat/test-commented_code_linter.R | 30 lintr-3.3.0-1/lintr/tests/testthat/test-comparison_negation_linter.R | 21 lintr-3.3.0-1/lintr/tests/testthat/test-condition_call_linter.R | 20 lintr-3.3.0-1/lintr/tests/testthat/test-condition_message_linter.R | 71 - lintr-3.3.0-1/lintr/tests/testthat/test-conjunct_test_linter.R | 71 - lintr-3.3.0-1/lintr/tests/testthat/test-consecutive_assertion_linter.R | 12 lintr-3.3.0-1/lintr/tests/testthat/test-cyclocomp_linter.R | 32 lintr-3.3.0-1/lintr/tests/testthat/test-download_file_linter.R |only lintr-3.3.0-1/lintr/tests/testthat/test-empty_assignment_linter.R | 9 lintr-3.3.0-1/lintr/tests/testthat/test-exclusions.R | 45 lintr-3.3.0-1/lintr/tests/testthat/test-expect_comparison_linter.R | 19 lintr-3.3.0-1/lintr/tests/testthat/test-expect_lint.R | 44 lintr-3.3.0-1/lintr/tests/testthat/test-expect_true_false_linter.R | 29 lintr-3.3.0-1/lintr/tests/testthat/test-extraction_operator_linter.R | 37 lintr-3.3.0-1/lintr/tests/testthat/test-fixed_regex_linter.R | 141 +- lintr-3.3.0-1/lintr/tests/testthat/test-function_left_parentheses_linter.R | 61 - lintr-3.3.0-1/lintr/tests/testthat/test-get_source_expressions.R | 181 ++- lintr-3.3.0-1/lintr/tests/testthat/test-ids_with_token.R | 6 lintr-3.3.0-1/lintr/tests/testthat/test-if_switch_linter.R | 98 + lintr-3.3.0-1/lintr/tests/testthat/test-ifelse_censor_linter.R | 33 lintr-3.3.0-1/lintr/tests/testthat/test-implicit_assignment_linter.R | 165 +-- lintr-3.3.0-1/lintr/tests/testthat/test-implicit_integer_linter.R | 43 lintr-3.3.0-1/lintr/tests/testthat/test-indentation_linter.R | 221 ++-- lintr-3.3.0-1/lintr/tests/testthat/test-infix_spaces_linter.R | 73 - lintr-3.3.0-1/lintr/tests/testthat/test-is_numeric_linter.R | 26 lintr-3.3.0-1/lintr/tests/testthat/test-keyword_quote_linter.R | 54 - lintr-3.3.0-1/lintr/tests/testthat/test-length_test_linter.R | 100 +- lintr-3.3.0-1/lintr/tests/testthat/test-library_call_linter.R | 78 - lintr-3.3.0-1/lintr/tests/testthat/test-line_length_linter.R | 92 + lintr-3.3.0-1/lintr/tests/testthat/test-lint.R | 103 +- lintr-3.3.0-1/lintr/tests/testthat/test-lint_dir.R | 2 lintr-3.3.0-1/lintr/tests/testthat/test-lint_package.R | 6 lintr-3.3.0-1/lintr/tests/testthat/test-linter_tags.R | 69 + lintr-3.3.0-1/lintr/tests/testthat/test-list2df_linter.R |only lintr-3.3.0-1/lintr/tests/testthat/test-literal_coercion_linter.R | 74 + lintr-3.3.0-1/lintr/tests/testthat/test-make_linter_from_xpath.R | 59 + lintr-3.3.0-1/lintr/tests/testthat/test-matrix_apply_linter.R | 43 lintr-3.3.0-1/lintr/tests/testthat/test-methods.R | 22 lintr-3.3.0-1/lintr/tests/testthat/test-missing_argument_linter.R | 30 lintr-3.3.0-1/lintr/tests/testthat/test-namespace_linter.R | 36 lintr-3.3.0-1/lintr/tests/testthat/test-nzchar_linter.R | 43 lintr-3.3.0-1/lintr/tests/testthat/test-object_length_linter.R | 40 lintr-3.3.0-1/lintr/tests/testthat/test-object_name_linter.R | 252 +++-- lintr-3.3.0-1/lintr/tests/testthat/test-object_overwrite_linter.R | 4 lintr-3.3.0-1/lintr/tests/testthat/test-object_usage_linter.R | 228 ++-- lintr-3.3.0-1/lintr/tests/testthat/test-one_call_pipe_linter.R | 36 lintr-3.3.0-1/lintr/tests/testthat/test-outer_negation_linter.R | 34 lintr-3.3.0-1/lintr/tests/testthat/test-package_hooks_linter.R | 57 - lintr-3.3.0-1/lintr/tests/testthat/test-paste_linter.R | 123 +- lintr-3.3.0-1/lintr/tests/testthat/test-pipe_call_linter.R | 18 lintr-3.3.0-1/lintr/tests/testthat/test-pipe_consistency_linter.R | 129 +- lintr-3.3.0-1/lintr/tests/testthat/test-pipe_continuation_linter.R | 17 lintr-3.3.0-1/lintr/tests/testthat/test-pipe_return_linter.R | 6 lintr-3.3.0-1/lintr/tests/testthat/test-quotes_linter.R | 51 - lintr-3.3.0-1/lintr/tests/testthat/test-redundant_equals_linter.R | 17 lintr-3.3.0-1/lintr/tests/testthat/test-redundant_ifelse_linter.R | 46 lintr-3.3.0-1/lintr/tests/testthat/test-regex_subset_linter.R | 42 lintr-3.3.0-1/lintr/tests/testthat/test-return_linter.R | 289 +++-- lintr-3.3.0-1/lintr/tests/testthat/test-rstudio_markers.R | 2 lintr-3.3.0-1/lintr/tests/testthat/test-seq_linter.R | 67 + lintr-3.3.0-1/lintr/tests/testthat/test-settings.R | 92 - lintr-3.3.0-1/lintr/tests/testthat/test-sort_linter.R | 62 - lintr-3.3.0-1/lintr/tests/testthat/test-sprintf_linter.R | 81 + lintr-3.3.0-1/lintr/tests/testthat/test-string_boundary_linter.R | 79 + lintr-3.3.0-1/lintr/tests/testthat/test-strings_as_factors_linter.R | 38 lintr-3.3.0-1/lintr/tests/testthat/test-terminal_close_linter.R | 39 lintr-3.3.0-1/lintr/tests/testthat/test-todo_comment_linter.R | 38 lintr-3.3.0-1/lintr/tests/testthat/test-undesirable_function_linter.R | 59 - lintr-3.3.0-1/lintr/tests/testthat/test-undesirable_operator_linter.R | 67 - lintr-3.3.0-1/lintr/tests/testthat/test-unnecessary_concatenation_linter.R | 42 lintr-3.3.0-1/lintr/tests/testthat/test-unnecessary_lambda_linter.R | 137 +- lintr-3.3.0-1/lintr/tests/testthat/test-unnecessary_nested_if_linter.R | 260 ----- lintr-3.3.0-1/lintr/tests/testthat/test-unnecessary_nesting_linter.R | 223 ++-- lintr-3.3.0-1/lintr/tests/testthat/test-unnecessary_placeholder_linter.R | 24 lintr-3.3.0-1/lintr/tests/testthat/test-unneeded_concatenation_linter.R | 4 lintr-3.3.0-1/lintr/tests/testthat/test-unused_import_linter.R | 30 lintr-3.3.0-1/lintr/tests/testthat/test-use_lintr.R | 55 + lintr-3.3.0-1/lintr/tests/testthat/test-vector_logic_linter.R | 102 +- lintr-3.3.0-1/lintr/tests/testthat/test-which_grepl_linter.R | 2 lintr-3.3.0-1/lintr/tests/testthat/test-whitespace_linter.R | 26 lintr-3.3.0-1/lintr/tests/testthat/test-with.R | 21 lintr-3.3.0-1/lintr/tests/testthat/test-with_id.R | 9 lintr-3.3.0-1/lintr/tests/testthat/test-yoda_test_linter.R | 12 lintr-3.3.0-1/lintr/vignettes/lintr.Rmd | 9 258 files changed, 6142 insertions(+), 4505 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-11-13 0.0.5
2025-11-12 0.0.4
2023-11-30 0.0.3
2023-11-13 0.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-11-24 0.1.0
Title: Distributed Representations of Words
Description: Learn vector representations of words by continuous bag of words and skip-gram implementations of the 'word2vec' algorithm.
The techniques are detailed in the paper "Distributed Representations of Words and Phrases and their Compositionality" by Mikolov et al. (2013), available at <doi:10.48550/arXiv.1310.4546>.
Author: Jan Wijffels [aut, cre, cph] ,
Kohei Watanabe [aut] ,
BNOSAC [cph] ,
Max Fomichev [ctb, cph]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between word2vec versions 0.4.0 dated 2023-10-07 and 0.4.1 dated 2025-11-27
DESCRIPTION | 12 ++-- MD5 | 8 +- NEWS.md | 5 + R/word2vec.R | 4 - man/word2vec_similarity.Rd | 124 ++++++++++++++++++++++----------------------- 5 files changed, 79 insertions(+), 74 deletions(-)
Title: Infrastructure for the Traveling Salesperson Problem
Description: Basic infrastructure and some algorithms for the traveling
salesperson problem (also traveling salesman problem; TSP).
The package provides some simple algorithms and
an interface to the Concorde TSP solver and its implementation of the
Chained-Lin-Kernighan heuristic. The code for Concorde
itself is not included in the package and has to be obtained separately.
Hahsler and Hornik (2007) <doi:10.18637/jss.v023.i02>.
Author: Michael Hahsler [aut, cre, cph] ,
Kurt Hornik [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between TSP versions 1.2-5 dated 2025-05-27 and 1.2.6 dated 2025-11-27
DESCRIPTION | 10 +-- MD5 | 38 +++++++------ NEWS.md | 8 ++ R/AAA_parameter.R | 27 +++++---- R/ETSP.R | 2 R/TSPLIB.R | 12 ++-- R/solve_TSP.R | 130 ++++++++++++++++++++++++++++++++-------------- R/tsp_SA.R |only R/tsp_concorde.R | 27 +++++---- R/tsp_insertion.R | 24 +++++--- R/tsp_nn.R | 8 ++ README.md | 148 +++++++++++++++++++++++++++++++++++++++++++---------- build/partial.rdb |binary build/vignette.rds |binary inst/README_files |only inst/doc/TSP.pdf |binary man/Concorde.Rd | 24 ++++---- man/TSP-package.Rd | 2 man/TSPLIB.Rd | 7 +- man/solve_TSP.Rd | 92 ++++++++++++++++++++++++-------- vignettes/TSP.bib | 55 +++++++++++++------ 21 files changed, 426 insertions(+), 188 deletions(-)
Title: Lightweight Extension of the Base R Graphics System
Description: Lightweight extension of the base R graphics system, with support
for automatic legends, facets, themes, and various other enhancements.
Author: Grant McDermott [aut, cre] ,
Vincent Arel-Bundock [aut] ,
Achim Zeileis [aut] ,
Etienne Bacher [ctb]
Maintainer: Grant McDermott <gmcd@amazon.com>
Diff between tinyplot versions 0.5.0 dated 2025-09-22 and 0.6.0 dated 2025-11-27
tinyplot-0.5.0/tinyplot/R/sanitize.R |only tinyplot-0.6.0/tinyplot/DESCRIPTION | 8 tinyplot-0.6.0/tinyplot/MD5 | 124 +- tinyplot-0.6.0/tinyplot/NAMESPACE | 2 tinyplot-0.6.0/tinyplot/NEWS.md | 98 + tinyplot-0.6.0/tinyplot/R/align_layer.R |only tinyplot-0.6.0/tinyplot/R/by_aesthetics.R | 153 ++- tinyplot-0.6.0/tinyplot/R/dodge.R |only tinyplot-0.6.0/tinyplot/R/draw_legend.R | 29 tinyplot-0.6.0/tinyplot/R/facet.R | 44 tinyplot-0.6.0/tinyplot/R/flip.R |only tinyplot-0.6.0/tinyplot/R/lim.R | 55 - tinyplot-0.6.0/tinyplot/R/sanitize_axes.R |only tinyplot-0.6.0/tinyplot/R/sanitize_datapoints.R |only tinyplot-0.6.0/tinyplot/R/sanitize_facet.R |only tinyplot-0.6.0/tinyplot/R/sanitize_legend.R |only tinyplot-0.6.0/tinyplot/R/sanitize_ribbon_alpha.R |only tinyplot-0.6.0/tinyplot/R/sanitize_type.R |only tinyplot-0.6.0/tinyplot/R/sanitize_xylab.R | 19 tinyplot-0.6.0/tinyplot/R/setup_device.R | 6 tinyplot-0.6.0/tinyplot/R/tinyplot.R | 509 ++++------ tinyplot-0.6.0/tinyplot/R/title.R | 2 tinyplot-0.6.0/tinyplot/R/type_abline.R | 81 - tinyplot-0.6.0/tinyplot/R/type_area.R | 39 tinyplot-0.6.0/tinyplot/R/type_barplot.R | 60 - tinyplot-0.6.0/tinyplot/R/type_boxplot.R | 39 tinyplot-0.6.0/tinyplot/R/type_bubble.R |only tinyplot-0.6.0/tinyplot/R/type_density.R | 29 tinyplot-0.6.0/tinyplot/R/type_errorbar.R | 89 + tinyplot-0.6.0/tinyplot/R/type_function.R | 11 tinyplot-0.6.0/tinyplot/R/type_glm.R | 17 tinyplot-0.6.0/tinyplot/R/type_histogram.R | 88 - tinyplot-0.6.0/tinyplot/R/type_hline.R | 24 tinyplot-0.6.0/tinyplot/R/type_jitter.R | 36 tinyplot-0.6.0/tinyplot/R/type_lines.R | 37 tinyplot-0.6.0/tinyplot/R/type_lm.R | 17 tinyplot-0.6.0/tinyplot/R/type_loess.R | 16 tinyplot-0.6.0/tinyplot/R/type_pointrange.R | 72 - tinyplot-0.6.0/tinyplot/R/type_points.R | 96 + tinyplot-0.6.0/tinyplot/R/type_qq.R | 7 tinyplot-0.6.0/tinyplot/R/type_ribbon.R | 124 +- tinyplot-0.6.0/tinyplot/R/type_ridge.R | 46 tinyplot-0.6.0/tinyplot/R/type_rug.R | 6 tinyplot-0.6.0/tinyplot/R/type_spineplot.R | 96 - tinyplot-0.6.0/tinyplot/R/type_spline.R | 33 tinyplot-0.6.0/tinyplot/R/type_summary.R | 20 tinyplot-0.6.0/tinyplot/R/type_text.R | 124 +- tinyplot-0.6.0/tinyplot/R/type_violin.R | 29 tinyplot-0.6.0/tinyplot/R/type_vline.R | 26 tinyplot-0.6.0/tinyplot/R/utils.R | 59 - tinyplot-0.6.0/tinyplot/R/zzz.R | 46 tinyplot-0.6.0/tinyplot/README.md | 6 tinyplot-0.6.0/tinyplot/man/dodge_positions.Rd |only tinyplot-0.6.0/tinyplot/man/facet.Rd | 9 tinyplot-0.6.0/tinyplot/man/figures/README-quickstart2-1.png |binary tinyplot-0.6.0/tinyplot/man/figures/README-quickstart3-1.png |binary tinyplot-0.6.0/tinyplot/man/figures/README-quickstart4-1.png |binary tinyplot-0.6.0/tinyplot/man/figures/README-quickstart5-1.png |binary tinyplot-0.6.0/tinyplot/man/figures/README-quickstart_theme-1.png |binary tinyplot-0.6.0/tinyplot/man/tinyplot.Rd | 3 tinyplot-0.6.0/tinyplot/man/type_abline.Rd | 12 tinyplot-0.6.0/tinyplot/man/type_errorbar.Rd | 110 +- tinyplot-0.6.0/tinyplot/man/type_histogram.Rd | 11 tinyplot-0.6.0/tinyplot/man/type_lines.Rd | 24 tinyplot-0.6.0/tinyplot/man/type_points.Rd | 31 tinyplot-0.6.0/tinyplot/man/type_ribbon.Rd | 71 + tinyplot-0.6.0/tinyplot/man/type_spline.Rd | 3 tinyplot-0.6.0/tinyplot/man/type_summary.Rd | 5 tinyplot-0.6.0/tinyplot/man/type_text.Rd | 42 69 files changed, 1640 insertions(+), 1103 deletions(-)
Title: Converts 'NONMEM' Models to 'rxode2'
Description: 'NONMEM' has been a tool for running nonlinear mixed
effects models since the 80s and is still used today (Bauer 2019
<doi:10.1002/psp4.12404>). This tool allows you to convert
'NONMEM' models to 'rxode2' (Wang, Hallow and James (2016)
<doi:10.1002/psp4.12052>) and with simple models 'nlmixr2' syntax
(Fidler et al (2019) <doi:10.1002/psp4.12445>). The 'nlmixr2'
syntax requires the residual specification to be included and it
is not always translated. If available, the 'rxode2' model will
read in the 'NONMEM' data and compare the simulation for the
population model ('PRED') individual model ('IPRED') and residual
model ('IWRES') to immediately show how well the translation is
performing. This saves the model development time for people who are
creating an 'rxode2' model manually. Additionally, this package reads
in all the information to allow simulation with uncertainty (that is the
number of observations, the number of subjects, and the covariance
matrix) with a 'rx [...truncated...]
Author: Matthew Fidler [aut, cre] ,
Philip Delff [ctb],
Gabriel Staples [ctb]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between nonmem2rx versions 0.1.8 dated 2025-08-29 and 0.1.9 dated 2025-11-27
DESCRIPTION | 10 +++++----- MD5 | 15 ++++++++------- NEWS.md | 6 ++++++ R/nonmem2rx.R | 10 +++++----- R/readInNonmemInput.R | 25 +++++++++++++++++++++++++ build/vignette.rds |binary inst/doc/import-nonmem.html | 14 +++++++------- man/nonmem2rx.Rd | 6 +++--- tests/testthat/test-import-numeric.R |only 9 files changed, 59 insertions(+), 27 deletions(-)
Title: Estimating the Age using Auricular Surface by DNE
Description: The age is estimated by calculating the Dirichlet Normal Energy (DNE) on the whole auricular surface and the apex of the auricular surface. It involves three estimation methods: principal component discriminant analysis (PCQDA), and principal component logistic regression analysis (PCLR) methods, principal component regression analysis with Southeast Asian (A_PCR), and principal component regression analysis with multipopulation (M_PCR). The package is created with the data from the Louis Lopes Collection in Lisbon, the 21st Century Identified Human Remains Collection in Coimbra, and the CAL Milano Cemetery Skeletal Collection in Milan, and the skeletal collection at Khon Kaen University (KKU) Human Skeletal Research Centre (HSRC), housed in the Department of Anatomy in the Faculty of Medicine at KKU in Khon Kaen.
Author: Jisun Jang [aut, cre]
Maintainer: Jisun Jang <jisun.jang.19@ucl.ac.uk>
Diff between JSDNE versions 4.5 dated 2025-05-03 and 4.6 dated 2025-11-27
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++++++++++++-- NAMESPACE | 7 +++++++ R/Distribution.R |only R/FirstObvervation.R |only R/MultiData.R |only R/RawData.R |only R/SecondObservation.R |only R/ThaiData.R |only R/TrendLine.R |only data/Distribution.rda |only data/FirstObservation.rda |only data/RawData.rda |only data/SecondObservation.rda |only data/ThaiData.rda |only data/TrendLine.rda |only man/Distribution.Rd |only man/FirstObservation.Rd |only man/MultiData.Rd |only man/RawData.Rd |only man/SecondObservation.Rd |only man/ThaiData.Rd |only man/TrendLine.Rd |only 23 files changed, 32 insertions(+), 5 deletions(-)
Title: Generalized Kumaraswamy Distribution Family
Description: Implements the five-parameter Generalized Kumaraswamy ('gkw')
distribution proposed by 'Carrasco, Ferrari and Cordeiro (2010)'
<doi:10.48550/arXiv.1004.0911> and its seven nested sub-families for
modeling bounded continuous data on the unit interval (0,1). The 'gkw'
distribution extends the Kumaraswamy distribution described by Jones (2009)
<doi:10.1016/j.stamet.2008.04.001>. Provides density, distribution,
quantile, and random generation functions, along with analytical
log-likelihood, gradient, and Hessian functions implemented in 'C++' via
'RcppArmadillo' for maximum computational efficiency. Suitable for modeling
proportions, rates, percentages, and indices exhibiting complex features
such as asymmetry, or heavy tails and other shapes not adequately captured by
standard distributions like simple Beta or Kumaraswamy.
Author: Jose Evandeilton Lopes [aut, cre]
Maintainer: Jose Evandeilton Lopes <evandeilton@gmail.com>
Diff between gkwdist versions 1.0.10 dated 2025-11-13 and 1.1.1 dated 2025-11-27
DESCRIPTION | 6 MD5 | 141 NEWS.md | 77 R/RcppExports.R |10527 ------------------------------------------- R/beta.R |only R/bkw.R |only R/bpmc.R |only R/ekw.R |only R/gkw.R |only R/kkw.R |only R/kw.R |only README.md | 40 build/vignette.rds |binary inst/doc/into-gkwdist.Rmd | 2 inst/doc/into-gkwdist.html | 10 inst/doc/theory-gkwdist.R |only inst/doc/theory-gkwdist.Rmd |only inst/doc/theory-gkwdist.html |only man/dbeta_.Rd | 10 man/dbkw.Rd | 10 man/dekw.Rd | 10 man/dgkw.Rd | 12 man/dkkw.Rd | 10 man/dkw.Rd | 11 man/dmc.Rd | 10 man/grbeta.Rd | 2 man/grbkw.Rd | 2 man/grekw.Rd | 2 man/grgkw.Rd | 2 man/grkkw.Rd | 2 man/grkw.Rd | 2 man/grmc.Rd | 2 man/hsbeta.Rd | 2 man/hsbkw.Rd | 2 man/hsekw.Rd | 2 man/hsgkw.Rd | 2 man/hskkw.Rd | 2 man/hskw.Rd | 2 man/hsmc.Rd | 2 man/llbeta.Rd | 2 man/llbkw.Rd | 2 man/llekw.Rd | 2 man/llgkw.Rd | 2 man/llkkw.Rd | 2 man/llkw.Rd | 2 man/llmc.Rd | 2 man/pbeta_.Rd | 22 man/pbkw.Rd | 30 man/pekw.Rd | 22 man/pgkw.Rd | 35 man/pkkw.Rd | 32 man/pkw.Rd | 20 man/pmc.Rd | 20 man/qbeta_.Rd | 30 man/qbkw.Rd | 38 man/qekw.Rd | 30 man/qgkw.Rd | 29 man/qkkw.Rd | 38 man/qkw.Rd | 28 man/qmc.Rd | 28 man/rbeta_.Rd | 4 man/rbkw.Rd | 4 man/rekw.Rd | 4 man/rgkw.Rd | 8 man/rkkw.Rd | 4 man/rkw.Rd | 4 man/rmc.Rd | 4 src/beta_.cpp | 2642 ++++------ src/bkw.cpp | 4593 ++++++++---------- src/bpmc.cpp | 3792 ++++++--------- src/ekw.cpp | 4067 +++++++--------- src/gkw.cpp | 4355 ++++++----------- src/kkw.cpp | 4730 +++++++++---------- src/kw.cpp | 2924 ++++------- src/utils.h | 701 -- vignettes/into-gkwdist.Rmd | 2 vignettes/theory-gkwdist.Rmd |only 77 files changed, 11783 insertions(+), 27375 deletions(-)