Title: Word Embedding Research Framework for Psychological Science
Description: An integrative toolbox of word embedding research that provides:
(1) a collection of 'pre-trained' static word vectors in the '.RData'
compressed format <https://psychbruce.github.io/WordVector_RData.pdf>;
(2) a group of functions to process, analyze, and visualize word vectors;
(3) a range of tests to examine conceptual associations, including
the Word Embedding Association Test <doi:10.1126/science.aal4230>
and the Relative Norm Distance <doi:10.1073/pnas.1720347115>,
with permutation test of significance; and
(4) a set of training methods to locally train (static) word vectors
from text corpora, including 'Word2Vec' <doi:10.48550/arXiv.1301.3781>,
'GloVe' <doi:10.3115/v1/D14-1162>, and 'FastText' <doi:10.48550/arXiv.1607.04606>.
Author: Han Wu Shuang Bao [aut, cre]
Maintainer: Han Wu Shuang Bao <baohws@foxmail.com>
Diff between PsychWordVec versions 2025.8 dated 2025-08-19 and 2025.11 dated 2025-11-30
DESCRIPTION | 16 ++++++++-------- MD5 | 6 +++--- NEWS.md | 4 ++++ build/partial.rdb |binary 4 files changed, 15 insertions(+), 11 deletions(-)
Title: Download and Process GIMMS NDVI3g Data
Description: This is a set of functions to retrieve information about GIMMS
NDVI3g files currently available online; download (and re-arrange, in the
case of NDVI3g.v0) the half-monthly data sets; import downloaded files from
ENVI binary (NDVI3g.v0) or NetCDF format (NDVI3g.v1) directly into R based
on the widespread 'raster' package; conduct quality control; and generate
monthly composites (e.g., maximum values) from the half-monthly input data.
As a special gimmick, a method is included to conveniently apply the
Mann-Kendall trend test upon 'Raster*' images, optionally featuring
trend-free pre-whitening to account for lag-1 autocorrelation.
Author: Florian Detsch [cre, aut]
Maintainer: Florian Detsch <fdetsch@web.de>
Diff between gimms versions 1.2.3 dated 2025-08-20 and 1.2.4 dated 2025-11-30
DESCRIPTION | 12 LICENSE | 4 MD5 | 72 +-- NAMESPACE | 42 +- NEWS | 191 +++++----- NEWS.md | 191 +++++----- R/downloadGimms.R | 510 +++++++++++++-------------- R/gimms-package.R | 110 ++--- R/gimmsControls.R | 600 ++++++++++++++++---------------- R/monthlyComposite.R | 288 +++++++-------- R/monthlyIndices.R | 182 ++++----- R/oldNaming.R | 164 ++++---- R/qualityControl.R | 314 ++++++++-------- R/rasterizeGimms.R | 496 +++++++++++++------------- R/rearrangeFiles.R | 132 +++---- R/significantTau.R | 425 +++++++++++----------- R/updateInventory.R | 722 +++++++++++++++++++-------------------- README.md | 254 ++++++------- build/partial.rdb |binary data/bale3g.v1.rda |binary data/kili3g.v0.rda |binary inst/extdata/poles.html | 20 - inst/tinytest/test-getPolesFTP.R | 178 ++++----- inst/tinytest/tests.R | 206 +++++------ man/bale3g.v1.Rd | 32 - man/downloadGimms.Rd | 266 +++++++------- man/gimms-package.Rd | 84 ++-- man/kili3g.v0.Rd | 32 - man/monthlyComposite.Rd | 156 ++++---- man/monthlyIndices.Rd | 116 +++--- man/oldNaming.Rd | 98 ++--- man/qualityControl.Rd | 118 +++--- man/rasterizeGimms.Rd | 164 ++++---- man/rearrangeFiles.Rd | 82 ++-- man/significantTau.Rd | 245 ++++++------- man/updateInventory.Rd | 132 +++---- tests/tinytest.R | 10 37 files changed, 3336 insertions(+), 3312 deletions(-)
Title: Interface to 'X12-ARIMA'/'X13-ARIMA-SEATS' and Structure for
Batch Processing of Seasonal Adjustment
Description: The 'X13-ARIMA-SEATS' <https://www.census.gov/data/software/x13as.html> methodology and software is a widely used software and developed by the US Census Bureau. It can be accessed from 'R' with this package and 'X13-ARIMA-SEATS' binaries are provided by the 'R' package 'x13binary'.
Author: Alexander Kowarik [aut, cre] ,
Angelika Meraner [aut]
Maintainer: Alexander Kowarik <alexander.kowarik@statistik.gv.at>
Diff between x12 versions 1.10.3 dated 2022-05-19 and 1.11.0 dated 2025-11-30
DESCRIPTION | 18 MD5 | 8 R/plot-methods.R | 2398 +++++++++++++++++++++++++++---------------------------- README.md | 4 inst/CITATION | 38 5 files changed, 1233 insertions(+), 1233 deletions(-)
Title: Access Japanese Data via Public APIs and Curated Datasets
Description: Provides functions to access data from public RESTful APIs including
'Nager.Date', 'World Bank API', and 'REST Countries API', retrieving real-time or historical
data related to Japan, such as holidays, economic indicators, and international
demographic and geopolitical indicators. Additionally, the package includes one of the largest
curated collections of open datasets focused on Japan, covering topics such as natural disasters,
economic production, vehicle industry, air quality, demographics, and administrative divisions.
The package supports reproducible research and teaching by integrating reliable international
APIs and structured datasets from public, academic, and government sources.
For more information on the APIs, see:
'Nager.Date' <https://date.nager.at/Api>,
'World Bank API' <https://datahelpdesk.worldbank.org/knowledgebase/articles/889392>,
and 'REST Countries API' <https://restcountries.com/>.
Author: Renzo Caceres Rossi [aut, cre]
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>
Diff between JapanAPIs versions 0.1.0 dated 2025-08-26 and 0.1.1 dated 2025-11-30
DESCRIPTION | 6 MD5 | 153 +++++++++++----------- NAMESPACE | 1 NEWS.md |only R/data-documentation.R | 2 R/get_country_info_jp.R | 73 ++++++---- R/get_japan_child_mortality.R | 64 ++++++--- R/get_japan_cpi.R | 64 ++++++--- R/get_japan_energy_use.R | 64 ++++++--- R/get_japan_gdp.R | 70 ++++++---- R/get_japan_holidays.R | 58 ++++++-- R/get_japan_hospital_beds.R | 64 ++++++--- R/get_japan_life_expectancy.R | 64 ++++++--- R/get_japan_literacy_rate.R | 66 ++++++--- R/get_japan_population.R | 70 ++++++---- R/get_japan_unemployment.R | 64 ++++++--- R/japanapis-package.R | 2 R/utils.R | 2 R/view_datasets_JapanAPIs.R | 2 README.md | 2 build/vignette.rds |binary inst/CITATION | 2 inst/doc/JapanAPIs_vignette.html | 5 man/get_country_info_jp.Rd | 12 + man/get_japan_child_mortality.Rd | 10 + man/get_japan_cpi.Rd | 10 + man/get_japan_energy_use.Rd | 10 + man/get_japan_gdp.Rd | 10 + man/get_japan_holidays.Rd | 16 +- man/get_japan_hospital_beds.Rd | 10 + man/get_japan_life_expectancy.Rd | 10 + man/get_japan_literacy_rate.Rd | 11 + man/get_japan_population.Rd | 10 + man/get_japan_unemployment.Rd | 10 + tests/testthat/test-J1League_tbl_df.R | 2 tests/testthat/test-JNcharacter_df.R | 2 tests/testthat/test-atomic_bomb_survivors_df.R | 2 tests/testthat/test-centenarian_df.R | 2 tests/testthat/test-earthquake_station_sf.R | 2 tests/testthat/test-get_country_info_jp.R | 87 +++++++++--- tests/testthat/test-get_japan_child_mortality.R | 83 +++++------ tests/testthat/test-get_japan_cpi.R | 88 ++++++------ tests/testthat/test-get_japan_energy_use.R | 82 +++++------ tests/testthat/test-get_japan_gdp.R | 93 ++++++++----- tests/testthat/test-get_japan_holidays.R | 91 +++++++------ tests/testthat/test-get_japan_hospital_beds.R | 86 +++++++----- tests/testthat/test-get_japan_life_expectancy.R | 66 ++++++--- tests/testthat/test-get_japan_literacy_rate.R | 56 ++++++-- tests/testthat/test-get_japan_population.R | 89 ++++++++---- tests/testthat/test-get_japan_unemployment.R | 83 +++++++---- tests/testthat/test-hiroshima_tbl_df.R | 2 tests/testthat/test-japan_birth_stats_tbl_df.R | 2 tests/testthat/test-japan_population_tbl_df.R | 2 tests/testthat/test-japan_universities_tbl_df.R | 2 tests/testthat/test-japanese_whisky_tbl_df.R | 2 tests/testthat/test-jpn_climate_stations_tbl_df.R | 2 tests/testthat/test-jpn_climate_tbl_df.R | 2 tests/testthat/test-jpn_eq_miyagi_2003_df.R | 2 tests/testthat/test-jpn_gdp_cons_df.R | 2 tests/testthat/test-jpn_manga_hafu_df.R | 2 tests/testthat/test-jpn_prefectures_tbl_df.R | 2 tests/testthat/test-jpn_suicides_tbl_df.R | 2 tests/testthat/test-jpn_us_cars_df.R | 2 tests/testthat/test-jpn_usd_exchange_df.R | 2 tests/testthat/test-jpn_vehicle_prod_ts.R | 2 tests/testthat/test-jpnprefs_tbl_df.R | 2 tests/testthat/test-kobe_quake_1995_ts.R | 2 tests/testthat/test-kojima_tweets_tbl_df.R | 2 tests/testthat/test-life_exp_japan_tbl_df.R | 2 tests/testthat/test-nikkei_stock_index_df.R | 2 tests/testthat/test-sake_ratings_df.R | 2 tests/testthat/test-seishu_wine_df.R | 2 tests/testthat/test-shinkansen_stations_tbl_df.R | 2 tests/testthat/test-tokaido_stations_tbl_df.R | 2 tests/testthat/test-tokyo_rainfall_vec.R | 2 tests/testthat/test-tokyo_wards_tbl_df.R | 2 tests/testthat/test-toyota_stock_prices_df.R | 2 tests/testthat/test-view_datasets_JapanAPIs.R | 2 78 files changed, 1238 insertions(+), 749 deletions(-)
Title: Draw Network with Data
Description: Extends the 'ggplot2' plotting system to support network visualization. Inspired by the 'Method 1' in 'ggtree' (G Yu (2018) <doi:10.1093/molbev/msy194>), 'ggtangle' is designed to work with network associated data.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between ggtangle versions 0.0.8 dated 2025-11-05 and 0.0.9 dated 2025-11-30
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ R/AllGenerics.r | 2 ++ R/cnet.r | 12 ++++++++++++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/ggtangle.html | 22 +++++++++++----------- man/cnetplot.Rd | 4 ++++ 9 files changed, 44 insertions(+), 22 deletions(-)
Title: Easy Visualization of Conditional Effects from Regression Models
Description: Offers a flexible and user-friendly interface for visualizing conditional
effects from a broad range of regression models, including mixed-effects and generalized
additive (mixed) models. Compatible model types include lm(), rlm(), glm(), glm.nb(),
and gam() (from 'mgcv'); nonlinear models via nls(); and generalized least squares via
gls(). Mixed-effects models with random intercepts and/or slopes can be fitted using
lmer(), glmer(), glmer.nb(), glmmTMB(), or gam() (from 'mgcv', via smooth terms).
Plots are rendered using base R graphics with extensive customization options.
Approximate confidence intervals for nls() models are computed using the delta method.
Robust standard errors for rlm() are computed using the sandwich estimator (Zeileis 2004)
<doi:10.18637/jss.v011.i10>. Methods for generalized additive models follow Wood (2017)
<doi:10.1201/9781315370279>. For linear mixed-effects models with 'lme4', see
Bates et al. (2015) <doi:10.18637/jss.v067.i01>. For mixe [...truncated...]
Author: Luca Corlatti [aut, cre]
Maintainer: Luca Corlatti <lucac1980@yahoo.it>
Diff between easyViz versions 1.1.0 dated 2025-08-21 and 1.2.0 dated 2025-11-30
easyViz-1.1.0/easyViz/R/easyViz_1.1.0.R |only easyViz-1.2.0/easyViz/DESCRIPTION | 8 - easyViz-1.2.0/easyViz/MD5 | 8 - easyViz-1.2.0/easyViz/NEWS.md | 10 + easyViz-1.2.0/easyViz/R/easyViz_1.2.0.R |only easyViz-1.2.0/easyViz/man/easyViz.Rd | 205 ++++++++++++++++---------------- 6 files changed, 125 insertions(+), 106 deletions(-)
Title: Your Friendly Solution to Managing Browser Cookies
Description: A convenient tool to store and format browser cookies and use them
in 'HTTP' requests (for example, through 'httr2', 'httr' or 'curl').
Author: Johannes B. Gruber [aut, cre]
Maintainer: Johannes B. Gruber <JohannesB.Gruber@gmail.com>
This is a re-admission after prior archival of version 0.0.5 dated 2025-11-13
Diff between cookiemonster versions 0.0.5 dated 2025-11-13 and 0.1.0 dated 2025-11-30
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ inst/doc/cookies.html | 4 ++-- tests/testthat/test-req_cookiemonster_set.R | 2 +- 5 files changed, 14 insertions(+), 10 deletions(-)
Title: Parallel Chain Tools for Bayesian Kernel Machine Regression
Description: Bayesian kernel machine regression (from the 'bkmr' package)
is a Bayesian semi-parametric generalized linear model approach under
identity and probit links. There are a number of functions in this
package that extend Bayesian kernel machine regression fits to allow
multiple-chain inference and diagnostics, which leverage functions
from the 'future', 'rstan', and 'coda' packages. Reference: Bobb, J.
F., Henn, B. C., Valeri, L., & Coull, B. A. (2018). Statistical
software for analyzing the health effects of multiple concurrent
exposures via Bayesian kernel machine regression. ;
<doi:10.1186/s12940-018-0413-y>.
Author: Alexander Keil [aut, cre]
Maintainer: Alexander Keil <alex.keil@nih.gov>
Diff between bkmrhat versions 1.1.3 dated 2022-03-29 and 1.1.7 dated 2025-11-30
DESCRIPTION | 18 MD5 | 16 NEWS.md | 14 README.md | 2 build/vignette.rds |binary inst/doc/bkmrhat-vignette.R | 3 inst/doc/bkmrhat-vignette.Rmd | 3 inst/doc/bkmrhat-vignette.html | 1259 +++++++++++++++-------------------------- vignettes/bkmrhat-vignette.Rmd | 3 9 files changed, 512 insertions(+), 806 deletions(-)
Title: SQLite Interface for R
Description: Embeds the SQLite database engine in R and provides an
interface compliant with the DBI package. The source for the SQLite
engine (version 3.51.1) and for various extensions is included.
System libraries will never be consulted because this package relies
on static linking for the plugins it includes; this also ensures a
consistent experience across all installations.
Author: Kirill Mueller [aut, cre] ,
Hadley Wickham [aut],
David A. James [aut],
Seth Falcon [aut],
D. Richard Hipp [ctb] ,
Dan Kennedy [ctb] ,
Joe Mistachkin [ctb] ,
SQLite Authors [ctb] ,
Liam Healy [ctb] ,
R Consortium [fnd],
RStudio [cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between RSQLite versions 2.4.4 dated 2025-11-10 and 2.4.5 dated 2025-11-30
DESCRIPTION | 10 +++---- MD5 | 8 ++--- NEWS.md | 7 +++++ src/vendor/sqlite3/sqlite3.c | 58 +++++++++++++++++++++++++++++++++---------- src/vendor/sqlite3/sqlite3.h | 14 +++++----- 5 files changed, 68 insertions(+), 29 deletions(-)
Title: Query the Attentional Control Data Collection
Description: Interact with the Attentional Control Data Collection (ACDC).
Connect to the database via connect_to_db(), set filter arguments via add_argument()
and query the database via query_db().
Author: Sven Lesche [aut, cre, cph],
Julia M. Haaf [ctb, ths],
Madlen Hoffstadt [ctb]
Maintainer: Sven Lesche <sven.lesche@psychologie.uni-heidelberg.de>
Diff between acdcquery versions 1.1.0 dated 2025-07-31 and 1.1.1 dated 2025-11-30
DESCRIPTION | 6 MD5 | 10 - NEWS.md | 4 R/add_join_paths_to_query.R | 319 ++++++++++++++++++++--------------------- R/query_db.R | 3 man/add_join_paths_to_query.Rd | 5 6 files changed, 178 insertions(+), 169 deletions(-)
Title: Task Tracking and Project Management with GitHub
Description: Provides programmatic access to 'GitHub' API with a
focus on project management. Key functionality includes
setting up issues and milestones from R objects or 'YAML' configurations,
querying outstanding or completed tasks, and generating progress updates
in tables, charts, and RMarkdown reports. Useful for those using 'GitHub' in personal,
professional, or academic settings with an emphasis on streamlining
the workflow of data analysis projects.
Author: Emily Riederer [cre, aut]
Maintainer: Emily Riederer <emilyriederer@gmail.com>
Diff between projmgr versions 0.1.1 dated 2024-01-24 and 0.1.2 dated 2025-11-30
projmgr-0.1.1/projmgr/R/draft |only projmgr-0.1.1/projmgr/inst/extdata/plan.json |only projmgr-0.1.1/projmgr/inst/extdata/todo.json |only projmgr-0.1.2/projmgr/DESCRIPTION | 9 ++- projmgr-0.1.2/projmgr/MD5 | 42 +---------------- projmgr-0.1.2/projmgr/NEWS.md | 4 + projmgr-0.1.2/projmgr/tests/testthat/test-get-engine.R | 16 ++++-- 7 files changed, 23 insertions(+), 48 deletions(-)
Title: Nonlinear Mixed Effects Models in Population PK/PD
Description: Fit and compare nonlinear mixed-effects models in differential
equations with flexible dosing information commonly seen in pharmacokinetics
and pharmacodynamics (Almquist, Leander, and Jirstrand 2015
<doi:10.1007/s10928-015-9409-1>). Differential equation solving is
by compiled C code provided in the 'rxode2' package
(Wang, Hallow, and James 2015 <doi:10.1002/psp4.12052>).
Author: Matthew Fidler [aut, cre] ,
Anne Keunecke [ctb],
Rik Schoemaker [ctb] ,
Justin Wilkins [ctb] ,
Wenping Wang [ctb],
Mirjam Trame [ctb],
John Harrold [ctb],
Bill Denney [ctb] ,
Theodoros Papathanasiou [ctb],
Richard Hooijmaijers [ctb],
Michael Wayne Ke [...truncated...]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between nlmixr2 versions 4.0.1 dated 2025-08-29 and 5.0.0 dated 2025-11-30
DESCRIPTION | 12 ++++++------ MD5 | 2 +- 2 files changed, 7 insertions(+), 7 deletions(-)
Title: Various R Programming Tools for Plotting Data
Description: Various R programming tools for plotting data, including:
- calculating and plotting locally smoothed summary function as
('bandplot', 'wapply'),
- enhanced versions of standard plots ('barplot2', 'boxplot2',
'heatmap.2', 'smartlegend'),
- manipulating colors ('col2hex', 'colorpanel', 'redgreen',
'greenred', 'bluered', 'redblue', 'rich.colors'),
- calculating and plotting two-dimensional data summaries ('ci2d',
'hist2d'),
- enhanced regression diagnostic plots ('lmplot2', 'residplot'),
- formula-enabled interface to 'stats::lowess' function ('lowess'),
- displaying textual data in plots ('textplot', 'sinkplot'),
- plotting dots whose size reflects the relative magnitude of the
elements ('balloonplot', 'bubbleplot'),
- plotting "Venn" diagrams ('venn'),
- displaying Open-Office style plots ('ooplot'),
- plotting multiple data on same region, with separate axes
('overplot'),
- plotting means and confidence intervals ('plotCI', 'plotmeans'),
- spacing points in an x-y plot so they don't o [...truncated...]
Author: Gregory R. Warnes [aut],
Ben Bolker [aut],
Lodewijk Bonebakker [aut],
Robert Gentleman [aut],
Wolfgang Huber [aut],
Andy Liaw [aut],
Thomas Lumley [aut],
Martin Maechler [aut],
Arni Magnusson [aut],
Steffen Moeller [aut],
Marc Schwartz [aut],
Bill Ve [...truncated...]
Maintainer: Tal Galili <tal.galili@gmail.com>
Diff between gplots versions 3.2.0 dated 2024-10-05 and 3.3.0 dated 2025-11-30
gplots-3.2.0/gplots/R/smartlegend.R |only gplots-3.2.0/gplots/man/gplots-deprecated.Rd |only gplots-3.3.0/gplots/DESCRIPTION | 11 +++++----- gplots-3.3.0/gplots/MD5 | 26 +++++++++++++----------- gplots-3.3.0/gplots/NAMESPACE | 1 gplots-3.3.0/gplots/NEWS.md | 12 +++++++++++ gplots-3.3.0/gplots/R/boxplot2.R | 4 --- gplots-3.3.0/gplots/R/lmplot2.R | 22 -------------------- gplots-3.3.0/gplots/R/zzz.R | 25 +++++++++++++++++++++++ gplots-3.3.0/gplots/build/vignette.rds |binary gplots-3.3.0/gplots/inst/doc/heatmap.2.R |only gplots-3.3.0/gplots/inst/doc/heatmap.2.Rmd |only gplots-3.3.0/gplots/inst/doc/heatmap.2.html |only gplots-3.3.0/gplots/inst/doc/venn.html | 12 +++++------ gplots-3.3.0/gplots/man/adjust_hsv.Rd | 13 +++++++----- gplots-3.3.0/gplots/man/heatmap.2.Rd | 29 +++++++++++++++++++++++++++ gplots-3.3.0/gplots/vignettes/heatmap.2.Rmd |only 17 files changed, 100 insertions(+), 55 deletions(-)