Title: Watch the File System for Changes
Description: R binding for 'libfswatch', a file system monitoring library.
Watch files, or directories recursively, for changes in the
background. Log activity, or call an R function, upon every change
event.
Author: Charlie Gao [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between watcher versions 0.1.4 dated 2025-07-16 and 0.1.5 dated 2025-12-01
watcher-0.1.4/watcher/src/fswatch-5c443d2.tar.gz |only watcher-0.1.5/watcher/DESCRIPTION | 12 +++++----- watcher-0.1.5/watcher/MD5 | 16 +++++++------- watcher-0.1.5/watcher/NEWS.md | 4 +++ watcher-0.1.5/watcher/README.md | 25 ++++++++++++---------- watcher-0.1.5/watcher/configure | 2 - watcher-0.1.5/watcher/configure.ucrt | 2 - watcher-0.1.5/watcher/configure.win | 2 - watcher-0.1.5/watcher/man/watcher-package.Rd | 4 +-- watcher-0.1.5/watcher/src/fswatch-5c443d2p.tar.gz |only 10 files changed, 37 insertions(+), 30 deletions(-)
Title: Assessing Package Risk Metrics
Description: A reliable and validated tool that captures detailed risk metrics
such as R 'CMD' check, test coverage, traceability matrix, documentation, dependencies,
reverse dependencies, suggested dependency analysis, repository data,
and enhanced reporting for R packages that are local or stored
on remote repositories such as GitHub, CRAN, and Bioconductor.
Author: Edward Gillian [cre, aut] ,
Hugo Bottois [aut] ,
Paulin Charliquart [aut],
Andre Couturier [aut],
Sanofi [cph, fnd]
Maintainer: Edward Gillian <edward.gillian-ext@sanofi.com>
Diff between risk.assessr versions 3.0.0 dated 2025-11-28 and 3.0.1 dated 2025-12-01
DESCRIPTION | 6 - MD5 | 32 ++++---- NEWS.md | 7 + R/assess_pkg_r_package.R | 2 R/dependencies.R | 4 - R/get_bioconductor_data.R | 2 R/get_exports.R | 28 +++++-- inst/doc/define_custom_risk_rules.html | 7 - man/assess_pkg_r_package.Rd | 2 man/bioconductor_reverse_deps.Rd | 2 man/cran_revdep.Rd | 2 man/dependsOnPkgs.Rd | 2 man/get_exports.Rd | 26 ++++-- tests/testthat/test-check_suggested_exp_funcs.R | 94 ++++++++++++++++++++---- tests/testthat/test-generate_html_report.R | 1 tests/testthat/test-get_exports.R | 92 ++++++++++++++++++++--- tests/testthat/test-install_package_local.R | 17 +++- 17 files changed, 250 insertions(+), 76 deletions(-)
Title: Fast Time Series Modeling for Seasonal Series with Exogenous
Variables
Description: An implementation of sparsity-ranked lasso and related methods
for time series data. This methodology is especially useful for
large time series with exogenous features and/or complex
seasonality. Originally described in Peterson and Cavanaugh
(2022) <doi:10.1007/s10182-021-00431-7> in the context of variable
selection with interactions and/or polynomials, ranked sparsity is
a philosophy with methods useful for variable selection in the
presence of prior informational asymmetry. This situation exists for time
series data with complex seasonality, as shown in Peterson and Cavanaugh
(2024) <doi:10.1177/1471082X231225307>, which also describes this package
in greater detail. The sparsity-ranked penalization methods for time series
implemented in 'fastTS' can fit large/complex/high-frequency time series
quickly, even with a high-dimensional exogenous feature set. The method is
considerably faster than its competitors, while often producing more
accurate predictions. Also includ [...truncated...]
Author: Ryan Andrew Peterson [aut, cre, cph]
Maintainer: Ryan Andrew Peterson <ryan-peterson@uiowa.edu>
Diff between fastTS versions 1.0.2 dated 2024-12-01 and 1.0.3 dated 2025-12-01
DESCRIPTION | 18 - MD5 | 18 - NEWS.md | 4 R/fastTS.R | 4 R/helpers.R | 4 README.md | 24 +- build/vignette.rds |binary inst/doc/case_studies.html | 432 ++++++++++++++++++++--------------------- inst/doc/forecasting.html | 87 ++++---- inst/doc/hourly_er_visits.html | 43 ++-- 10 files changed, 321 insertions(+), 313 deletions(-)
Title: Tools to Query the 'Algaebase' Online Database, Standardize
Phytoplankton Taxonomic Data, and Perform Functional Group
Classifications
Description: Functions that facilitate the use of accepted taxonomic nomenclature, collection of
functional trait data, and assignment of functional group classifications to phytoplankton
species. Possible classifications include Morpho-functional group (MFG; Salmaso et al. 2015
<doi:10.1111/fwb.12520>) and CSR (Reynolds 1988; Functional morphology and the
adaptive strategies of phytoplankton. In C.D. Sandgren (ed). Growth and reproductive
strategies of freshwater phytoplankton, 388-433. Cambridge University Press, New York).
Versions 2.0.0 and later includes new functions for querying the
'algaebase' online taxonomic database (www.algaebase.org), however these functions require
a valid API key that must be acquired from the 'algaebase' administrators.
Note that none of the 'algaeClassify' authors are affiliated with 'algaebase' in any way. Taxonomic
names can also be checked against a variety of taxonomic databases using
the 'Global Names Resolver' service via its API (<https://resolver.g [...truncated...]
Author: Vijay Patil [aut, cre],
Torsten Seltmann [aut],
Nico Salmaso [aut],
Orlane Anneville [aut],
Marc Lajeunesse [aut],
Dietmar Straile [aut]
Maintainer: Vijay Patil <vij.patil@gmail.com>
Diff between algaeClassify versions 2.0.4 dated 2025-05-14 and 2.0.5 dated 2025-12-01
DESCRIPTION | 10 +-- MD5 | 16 +++--- NAMESPACE | 60 +++++++++++----------- NEWS.md | 5 + R/gnr_df.r | 144 ++++++++++++++++++++++++++++-------------------------- R/gnr_simple.r | 99 ++++++++++++++++++++++++------------- README.md | 12 +--- man/gnr_df.Rd | 24 +++------ man/gnr_simple.Rd | 26 +++++---- 9 files changed, 217 insertions(+), 179 deletions(-)
Title: Graphical User Interface ('shiny' App) for 'brms'
Description: A graphical user interface (GUI) for fitting Bayesian regression
models using the package 'brms' which in turn relies on 'Stan'
(<https://mc-stan.org/>). The 'shinybrms' GUI is a 'shiny' app.
Author: Frank Weber [aut, cre] ,
Katja Ickstadt [ctb] ,
Änne Glass [ctb] ,
Thomas Park [ctb, cph] ,
Twitter, Inc. [ctb, cph] ),
Google, LLC [ctb, cph]
Maintainer: Frank Weber <fweber144@protonmail.com>
Diff between shinybrms versions 1.8.0 dated 2022-08-05 and 1.8.1 dated 2025-12-01
shinybrms-1.8.0/shinybrms/inst/shinybrms_app/tests/shinytest |only shinybrms-1.8.0/shinybrms/inst/shinybrms_app/tests/shinytest.R |only shinybrms-1.8.0/shinybrms/tests/testthat/test-bacteria.R |only shinybrms-1.8.0/shinybrms/tests/testthat/test-brmsfit_upload.R |only shinybrms-1.8.0/shinybrms/tests/testthat/test-interactions.R |only shinybrms-1.8.0/shinybrms/tests/testthat/test-offsets.R |only shinybrms-1.8.0/shinybrms/tests/testthat/test-offsets_nonnum.R |only shinybrms-1.8.0/shinybrms/tests/testthat/test-priors.R |only shinybrms-1.8.0/shinybrms/tests/testthat/test-react.R |only shinybrms-1.8.1/shinybrms/DESCRIPTION | 23 shinybrms-1.8.1/shinybrms/MD5 | 241 - shinybrms-1.8.1/shinybrms/NEWS.md | 31 shinybrms-1.8.1/shinybrms/R/launch_shinybrms.R | 14 shinybrms-1.8.1/shinybrms/README.md | 140 shinybrms-1.8.1/shinybrms/build |only shinybrms-1.8.1/shinybrms/inst/shinybrms_app/app.R | 1511 ++++++---- shinybrms-1.8.1/shinybrms/inst/shinybrms_app/tests/testthat |only shinybrms-1.8.1/shinybrms/inst/shinybrms_app/tests/testthat.R |only shinybrms-1.8.1/shinybrms/man/launch_shinybrms.Rd | 13 shinybrms-1.8.1/shinybrms/tests/testthat/test-shinybrms.R |only 20 files changed, 1225 insertions(+), 748 deletions(-)
Title: Read and Manipulate Data from 'RiverWare'
Description: A tool to read and manipulate data generated from 'RiverWare'(TM)
<https://www.riverware.org/> simulations. 'RiverWare' and 'RiverSMART'
generate data in "rdf", "csv", and "nc" format. This package provides an
interface to read, aggregate, and summarize data from one or more
simulations in a 'dplyr' pipeline.
Author: Alan Butler [aut, cre],
Cameron Bracken [aut]
Maintainer: Alan Butler <rabutler@usbr.gov>
Diff between RWDataPlyr versions 0.6.4 dated 2020-04-17 and 0.6.5 dated 2025-12-01
DESCRIPTION | 14 - MD5 | 101 ++++---- NEWS.md | 8 R/rdf_to_rwtbl.R | 4 R/read_rdf.R | 33 ++ R/read_rw_csv.R | 2 R/yearmon_helpers.R | 4 README.md | 4 build/vignette.rds |binary data/keyRdf.rda |binary data/sysRdf.rda |binary inst/doc/rwdataplyr-workflow.R | 2 inst/doc/rwdataplyr-workflow.Rmd | 6 inst/doc/rwdataplyr-workflow.html | 464 ++++++++++++++++++++----------------- man/RWDataPlyr-package.Rd | 60 ++-- man/as_rwd_agg.Rd | 60 ++-- man/createSlotAggList.Rd | 32 +- man/getArrayPctl.Rd | 54 ++-- man/getArrayThresholdExceedance.Rd | 60 ++-- man/getDataForAllScens.Rd | 190 +++++++-------- man/getTraceAvg.Rd | 52 ++-- man/getTraceMax.Rd | 52 ++-- man/getTraceMin.Rd | 52 ++-- man/getTraceMonthVal.Rd | 50 +-- man/getTraceSum.Rd | 52 ++-- man/keyRdf.Rd | 48 +-- man/rbind.rwd_agg.Rd | 127 +++++----- man/rdfSlotToXTS.Rd | 54 ++-- man/rdf_get_slot.Rd | 64 ++--- man/rdf_get_timespan.Rd | 46 +-- man/rdf_slot_names.Rd | 66 ++--- man/rdf_to_rwtbl.Rd | 144 +++++------ man/read.rdf.Rd | 6 man/read_rw_csv.Rd | 2 man/read_rwd_agg.Rd | 60 ++-- man/rw_scen_gen_names.Rd | 106 ++++---- man/rwd_agg.Rd | 340 +++++++++++++-------------- man/rwd_agg_template.Rd | 58 ++-- man/rwslot_aggs.Rd | 210 ++++++++-------- man/rwtbl_get_scen_folder.Rd | 56 ++-- man/rwtbl_slot_names.Rd | 60 ++-- man/rwtbl_var_to_slot.Rd | 56 ++-- man/slot_agg_list.Rd | 272 ++++++++++----------- man/sysRdf.Rd | 48 +-- man/ym_get_wateryear.Rd | 72 ++--- src/Makevars | 2 src/Makevars.win | 2 src/RcppExports.cpp | 5 src/rwtbl.cpp | 283 +++++++++++----------- tests/rdfs/starts_trace_2.rdf |only tests/testthat/test_rdf_to_tbl2.R | 9 vignettes/rwdataplyr-workflow.Rmd | 6 52 files changed, 1828 insertions(+), 1730 deletions(-)
Title: Matrix Profile for R
Description: This is the core functions needed by the 'tsmp' package. The
low level and carefully checked mathematical functions are here.
These are implementations of the Matrix Profile concept that was
created by CS-UCR <http://www.cs.ucr.edu/~eamonn/MatrixProfile.html>.
Author: Francisco Bischoff [aut, cre] ,
Michael Yeh [res, ccp, ctb] ,
Diego Silva [res, ccp, ctb] ,
Yan Zhu [res, ccp, ctb] ,
Hoang Dau [res, ccp, ctb] ,
Michele Linardi [res, ccp, ctb]
Maintainer: Francisco Bischoff <fbischoff@med.up.pt>
Diff between matrixprofiler versions 0.1.9 dated 2023-01-26 and 0.1.10 dated 2025-12-01
DESCRIPTION | 27 +++++---- MD5 | 24 ++++---- NEWS | 44 ++++++++------- NEWS.md | 46 ++++++++------- README.md | 111 ++++++++++++++++++-------------------- inst/API | 2 inst/schemaorg.json | 10 ++- man/figures/dependency_plot-1.png |binary man/mp_algos.Rd | 2 src/Makevars | 2 src/Makevars.win | 2 src/mass.cpp | 4 - src/rcpp_parallel_fix.h | 2 13 files changed, 149 insertions(+), 127 deletions(-)
More information about matrixprofiler at CRAN
Permanent link
Title: Fast, Robust, and Outlier Resistant Hierarchical Clustering
Description: Includes the basic implementation of Genie - a hierarchical
clustering algorithm that links two point groups in such a way that
an inequity measure (namely, the Gini index) of the cluster sizes
does not significantly increase above a given threshold.
This method most often outperforms many other data segmentation approaches
in terms of clustering quality as tested on a wide range of benchmark
datasets. At the same time, Genie retains the high speed of the single
linkage approach, therefore it is also suitable for analysing larger data sets.
For more details see (Gagolewski et al. 2016 <DOI:10.1016/j.ins.2016.05.003>).
For an even faster and more feature-rich implementation, including,
amongst others, see the 'genieclust' package
(Gagolewski, 2021 <DOI:10.1016/j.softx.2021.100722>).
Author: Marek Gagolewski [aut, cre, cph] ,
Maciej Bartoszuk [aut] ,
Anna Cena [aut]
Maintainer: Marek Gagolewski <marek@gagolewski.com>
Diff between genie versions 1.0.5 dated 2020-08-02 and 1.0.6 dated 2025-12-01
DESCRIPTION | 50 +++++++++++++++++++----------------- MD5 | 56 ++++++++++++++++++++--------------------- NEWS | 6 ++++ R/genie-package.R | 7 ----- R/hclust2.R | 10 +------ inst/CITATION | 17 ++++-------- man/genie-package.Rd | 11 +++++++- man/hclust2.Rd | 9 ------ src/Makevars | 1 src/Makevars.win | 1 src/RcppExports.cpp | 5 +++ src/defs.h | 2 - src/disjoint_sets.cpp | 2 - src/disjoint_sets.h | 2 - src/hclust2_common.cpp | 2 - src/hclust2_common.h | 2 - src/hclust2_distance.cpp | 4 +- src/hclust2_distance.h | 2 - src/hclust2_mstbased_gini.cpp | 2 - src/hclust2_mstbased_gini.h | 2 - src/hclust2_nnbased_gini.h | 2 - src/hclust2_nnbased_single.cpp | 2 - src/hclust2_nnbased_single.h | 2 - src/hclust2_rcpp_gini.cpp | 2 - src/hclust2_result.cpp | 2 - src/hclust2_result.h | 2 - src/hclust2_vptree_gini.h | 2 - src/hclust2_vptree_single.cpp | 2 - src/hclust2_vptree_single.h | 2 - 29 files changed, 104 insertions(+), 107 deletions(-)
Title: Using 'Mathjax' in Rd Files
Description: Provides 'MathJax' and macros to enable its use within Rd files for rendering equations in the HTML help files.
Author: Wolfgang Viechtbauer [aut, cre]
Maintainer: Wolfgang Viechtbauer <wvb@wvbauer.com>
Diff between mathjaxr versions 1.8-0 dated 2025-04-30 and 2.0-0 dated 2025-12-01
mathjaxr-1.8-0/mathjaxr/src |only mathjaxr-2.0-0/mathjaxr/DESCRIPTION | 15 - mathjaxr-2.0-0/mathjaxr/MD5 | 282 ++++++++++++++++++------ mathjaxr-2.0-0/mathjaxr/NEWS.md | 6 mathjaxr-2.0-0/mathjaxr/README.md | 10 mathjaxr-2.0-0/mathjaxr/build/mathjaxr.pdf |binary mathjaxr-2.0-0/mathjaxr/build/stage23.rdb |binary mathjaxr-2.0-0/mathjaxr/inst/doc/R_dark.css | 167 +++++++------- mathjaxr-2.0-0/mathjaxr/inst/doc/mathjax |only mathjaxr-2.0-0/mathjaxr/man/macros/mathjax.Rd | 3 mathjaxr-2.0-0/mathjaxr/man/mathjaxr-package.Rd | 8 11 files changed, 321 insertions(+), 170 deletions(-)
Title: Estimation, Simulation and Visualization of Hierarchical
Archimedean Copulae (HAC)
Description: Package provides the estimation of the structure and the parameters, sampling methods and structural plots of Hierarchical Archimedean Copulae (HAC).
Author: Ostap Okhrin [aut],
Alexander Ristig [aut],
Ankit Anil Chaudhari [cre]
Maintainer: Ankit Anil Chaudhari <ankit_anil.chaudhari@tu-dresden.de>
Diff between HAC versions 1.1-1 dated 2024-09-16 and 1.1-2 dated 2025-12-01
DESCRIPTION | 18 +++++++++--------- MD5 | 4 ++-- inst/doc/HAC.pdf |binary 3 files changed, 11 insertions(+), 11 deletions(-)
Title: Extra Functionality for the 'xpose' Package
Description: Adding some at-present missing functionality, or functions
unlikely to be added to the base 'xpose' package. This includes some
diagnostic plots that have been missing in translation from 'xpose4',
but also some useful features that truly extend the capabilities of what
can be done with 'xpose'. These extensions include the concept of a set of
'xpose' objects, and diagnostics for likelihood-based models.
Author: John Prybylski [aut, cre, cph]
Maintainer: John Prybylski <jprybylski@gmail.com>
Diff between xpose.xtras versions 0.1.1 dated 2025-11-30 and 0.1.2 dated 2025-12-01
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 3 +++ R/nlmixr2.R | 31 ++++++++++++++++++++++++------- inst/doc/a02-xpose-sets.html | 16 ++++++++-------- inst/doc/a03-useful_plots.html | 2 +- tests/testthat/test-nlmixr2.R | 5 +++++ 7 files changed, 50 insertions(+), 25 deletions(-)
Title: Access Vegetation Databases and Treat Taxonomy
Description: Handling of vegetation data from different sources ( Turboveg
2.0 <https://www.synbiosys.alterra.nl/turboveg/>; the German national
repository <https://www.vegetweb.de> and others. Taxonomic
harmonization (given appropriate taxonomic lists, e.g. the Euro+Med
list <https://eurosl.infinitenature.org>).
Author: Florian Jansen [aut, cre]
Maintainer: Florian Jansen <florian.jansen@uni-rostock.de>
Diff between vegdata versions 0.9.12 dated 2024-01-29 and 1.9.15 dated 2025-12-01
vegdata-0.9.12/vegdata/R/caching.R |only vegdata-0.9.12/vegdata/R/cwm.r |only vegdata-0.9.12/vegdata/R/db_path.R |only vegdata-0.9.12/vegdata/R/onLoad.R |only vegdata-0.9.12/vegdata/R/pipe.R |only vegdata-0.9.12/vegdata/R/reShape.veg.r |only vegdata-0.9.12/vegdata/R/syntab.r |only vegdata-0.9.12/vegdata/R/sysdata.rda |only vegdata-0.9.12/vegdata/R/tax.child.r |only vegdata-0.9.12/vegdata/data/lc.0.csv.gz |only vegdata-0.9.12/vegdata/data/lc.1.csv.gz |only vegdata-0.9.12/vegdata/data/lc.all.csv.gz |only vegdata-0.9.12/vegdata/data/taxlevels.csv.gz |only vegdata-0.9.12/vegdata/inst/tvdata |only vegdata-0.9.12/vegdata/man/pipe.Rd |only vegdata-0.9.12/vegdata/man/recode.species.Rd |only vegdata-0.9.12/vegdata/man/tdb_cache.Rd |only vegdata-0.9.12/vegdata/man/tv.refl.Rd |only vegdata-1.9.15/vegdata/DESCRIPTION | 42 ++-- vegdata-1.9.15/vegdata/MD5 | 173 +++++++++----------- vegdata-1.9.15/vegdata/NAMESPACE | 35 +--- vegdata-1.9.15/vegdata/R/cwm.R |only vegdata-1.9.15/vegdata/R/data.R | 41 +++- vegdata-1.9.15/vegdata/R/db_download.R | 33 ++- vegdata-1.9.15/vegdata/R/reShape.veg.R |only vegdata-1.9.15/vegdata/R/src.R | 1 vegdata-1.9.15/vegdata/R/syntab.R |only vegdata-1.9.15/vegdata/R/tax.child.R |only vegdata-1.9.15/vegdata/R/tax.combine.species.r | 2 vegdata-1.9.15/vegdata/R/tax.names.R | 101 ++++++----- vegdata-1.9.15/vegdata/R/tax.r | 104 ++++-------- vegdata-1.9.15/vegdata/R/tax.reflist.r | 127 +++++--------- vegdata-1.9.15/vegdata/R/taxval.r | 75 ++++---- vegdata-1.9.15/vegdata/R/tv.biblio.R | 5 vegdata-1.9.15/vegdata/R/tv.coverperc.R | 28 +-- vegdata-1.9.15/vegdata/R/tv.db.R | 2 vegdata-1.9.15/vegdata/R/tv.home.R | 30 +-- vegdata-1.9.15/vegdata/R/tv.obs.R | 13 - vegdata-1.9.15/vegdata/R/tv.readXML.R | 9 - vegdata-1.9.15/vegdata/R/tv.renumber.r |only vegdata-1.9.15/vegdata/R/tv.site.R | 53 +----- vegdata-1.9.15/vegdata/R/tv.traits.r | 15 - vegdata-1.9.15/vegdata/R/tv.veg.r | 66 ++++--- vegdata-1.9.15/vegdata/R/tv.write.R | 11 - vegdata-1.9.15/vegdata/R/vegdata-internal.r | 2 vegdata-1.9.15/vegdata/R/vegdata-package.R | 8 vegdata-1.9.15/vegdata/R/zzz.R | 58 +++++- vegdata-1.9.15/vegdata/build/vignette.rds |binary vegdata-1.9.15/vegdata/data/lc.0.rda |only vegdata-1.9.15/vegdata/data/lc.1.rda |only vegdata-1.9.15/vegdata/data/lc.all.rda |only vegdata-1.9.15/vegdata/data/taxlevels.rda |only vegdata-1.9.15/vegdata/inst/doc/vegdata.R | 172 +++++++++---------- vegdata-1.9.15/vegdata/inst/doc/vegdata.Rnw | 135 ++++++--------- vegdata-1.9.15/vegdata/inst/doc/vegdata.pdf |binary vegdata-1.9.15/vegdata/inst/extdata |only vegdata-1.9.15/vegdata/man/child.Rd | 6 vegdata-1.9.15/vegdata/man/cwm.Rd | 28 +-- vegdata-1.9.15/vegdata/man/db_download.Rd | 2 vegdata-1.9.15/vegdata/man/db_path.Rd | 2 vegdata-1.9.15/vegdata/man/elbaue.Rd | 14 - vegdata-1.9.15/vegdata/man/lc.0.Rd | 4 vegdata-1.9.15/vegdata/man/lc.1.Rd | 2 vegdata-1.9.15/vegdata/man/lc.all.Rd | 2 vegdata-1.9.15/vegdata/man/parent.Rd | 6 vegdata-1.9.15/vegdata/man/recoding.taxa.Rd |only vegdata-1.9.15/vegdata/man/syn.Rd | 6 vegdata-1.9.15/vegdata/man/syntab.Rd | 18 +- vegdata-1.9.15/vegdata/man/tax.Rd | 11 - vegdata-1.9.15/vegdata/man/tax.refl.Rd |only vegdata-1.9.15/vegdata/man/taxlevels.Rd | 2 vegdata-1.9.15/vegdata/man/taxname.abbr.Rd | 4 vegdata-1.9.15/vegdata/man/taxname.removeAuthors.Rd | 9 - vegdata-1.9.15/vegdata/man/taxval.Rd | 19 +- vegdata-1.9.15/vegdata/man/tv.bib.Rd | 4 vegdata-1.9.15/vegdata/man/tv.coverperc.Rd | 7 vegdata-1.9.15/vegdata/man/tv.home.Rd | 4 vegdata-1.9.15/vegdata/man/tv.site.Rd | 13 + vegdata-1.9.15/vegdata/man/tv.traits.Rd | 2 vegdata-1.9.15/vegdata/man/tv.veg.Rd | 25 ++ vegdata-1.9.15/vegdata/man/tv.write.Rd | 6 vegdata-1.9.15/vegdata/man/vegdata-package.Rd | 9 - vegdata-1.9.15/vegdata/man/vegdata.Rd |only vegdata-1.9.15/vegdata/vignettes/vegdata.Rnw | 135 ++++++--------- 84 files changed, 817 insertions(+), 864 deletions(-)
Title: Generate Analysis Results Programmes Using ARS Metadata
Description: Analysis Results Standard (ARS), a foundational standard by CDISC
(Clinical Data Interchange Standards Consortium), provides a logical
data model for metadata describing all components to calculate Analysis Results.
<https://www.cdisc.org/standards/foundational/analysis-results-standard>
Using 'siera' package, ARS metadata is ingested (JSON or Excel format),
producing programmes to generate Analysis Results Datasets (ARDs).
Author: Malan Bosman [aut, cre],
Clymb Clinical [cph, fnd]
Maintainer: Malan Bosman <malanbos@gmail.com>
Diff between siera versions 0.5.4 dated 2025-09-25 and 0.5.5 dated 2025-12-01
DESCRIPTION | 8 MD5 | 75 - NEWS.md | 7 R/AnalysisMethods.R |only R/AnalysisSet.R |only R/DataSubsets.R |only R/globals.R | 18 R/libraries.R |only R/loadADaM.R |only R/metadata.R |only R/program_header.R |only R/readARS.R | 1761 ++++--------------------- README.md | 11 inst/doc/ARD_script_structure.R | 85 - inst/doc/ARD_script_structure.Rmd | 87 - inst/doc/ARD_script_structure.html | 111 - inst/doc/Getting_started.R | 16 inst/doc/Getting_started.Rmd | 16 inst/doc/Getting_started.html | 93 - inst/doc/using-cards.R | 4 inst/doc/using-cards.Rmd | 4 inst/doc/using-cards.html | 4 inst/extdata/ADSL.csv | 510 +++---- inst/extdata/Common_Safety_Displays_cards.xlsx |binary inst/extdata/cards_constructs.xlsx |binary inst/extdata/exampleARS_2a.xlsx |binary inst/extdata/exampleARS_3.xlsx |only inst/extdata/exampleARS_4.json |only inst/script/ARD_Out14-1-1.R | 1 inst/script/ARD_Out14-3-1-1.R | 3 man/dot-generate_adam_loading_code.Rd |only man/dot-generate_analysis_method_section.Rd |only man/dot-generate_analysis_set_code.Rd |only man/dot-generate_data_subset_code.Rd |only man/dot-generate_data_subset_condition.Rd |only man/dot-generate_library_code.Rd |only man/dot-generate_program_header.Rd |only man/dot-read_ars_json_metadata.Rd |only man/dot-read_ars_metadata.Rd |only man/dot-read_ars_xlsx_metadata.Rd |only man/readARS.Rd | 4 tests/testthat/test-AnalysisMethods.R |only tests/testthat/test-AnalysisSet.R |only tests/testthat/test-DataSubsets.R |only tests/testthat/test-analysis-methods.R |only tests/testthat/test-loadADaM.R |only tests/testthat/test-metadata.R |only tests/testthat/test-readARS.R | 634 +++++++-- vignettes/ARD_script_structure.Rmd | 87 - vignettes/Getting_started.Rmd | 16 vignettes/using-cards.Rmd | 4 51 files changed, 1419 insertions(+), 2140 deletions(-)
Title: Aid Querying 'nomis' and 'Office for National Statistics Open
Geography' APIs
Description: Facilitates extraction of geospatial data from the 'Office for National Statistics Open Geography' and 'nomis' Application Programming Interfaces (APIs). Simplifies process of querying 'nomis' datasets <https://www.nomisweb.co.uk/> and extracting desired datasets in dataframe format. Extracts area shapefiles at chosen resolution from 'Office for National Statistics Open Geography' <https://geoportal.statistics.gov.uk/>.
Author: Michael Stocks [aut, cre],
Andrew Christy [aut],
James Macpherson [aut],
Hadyn Jenkins [aut],
Crown Copyright
[cph]
Maintainer: Michael Stocks <sgapi.orhub@gmail.com>
Diff between sgapi versions 1.1.1 dated 2025-11-17 and 1.1.2 dated 2025-12-01
sgapi-1.1.1/sgapi/R/list_boundaries.R |only sgapi-1.1.1/sgapi/man/list_boundaries.Rd |only sgapi-1.1.1/sgapi/tests/testthat/test-list_boundaries.R |only sgapi-1.1.2/sgapi/DESCRIPTION | 6 sgapi-1.1.2/sgapi/MD5 | 11 - sgapi-1.1.2/sgapi/NAMESPACE | 1 sgapi-1.1.2/sgapi/R/get_boundaries_areaname.R | 113 ++++++++-------- sgapi-1.1.2/sgapi/man/get_boundaries_areaname.Rd | 3 8 files changed, 66 insertions(+), 68 deletions(-)
Title: Ridge Estimation of Precision Matrices from High-Dimensional
Data
Description: Proper L2-penalized maximum likelihood estimators for precision
matrices and supporting functions to employ these estimators in a graphical
modeling setting. For details, see Peeters, Bilgrau, & van Wieringen (2022)
<doi:10.18637/jss.v102.i04> and associated publications.
Author: Carel F.W. Peeters [aut, cre, cph] ,
Anders Ellern Bilgrau [aut, cph] ,
Wessel N. van Wieringen [aut]
Maintainer: Carel F.W. Peeters <carel.peeters@wur.nl>
Diff between rags2ridges versions 2.2.8 dated 2025-08-29 and 2.2.9 dated 2025-12-01
DESCRIPTION | 6 +-- MD5 | 10 ++--- inst/doc/rags2ridges.html | 62 ++++++++++++++++++------------------ tests/testthat/test-armaRidgeP.R | 12 +++--- tests/testthat/test-isSymmetricPD.R | 4 +- tests/testthat/test-xfcvl.R | 2 - 6 files changed, 48 insertions(+), 48 deletions(-)
Title: A Common API to Modeling and Analysis Functions
Description: A common interface is provided to allow users to specify a
model without having to remember the different argument names across
different functions or computational engines (e.g. 'R', 'Spark',
'Stan', 'H2O', etc).
Author: Max Kuhn [cre, aut] ,
Davis Vaughan [aut],
Emil Hvitfeldt [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between parsnip versions 1.3.3 dated 2025-08-31 and 1.4.0 dated 2025-12-01
parsnip-1.3.3/parsnip/tests/testthat/test-surv_reg.R |only parsnip-1.3.3/parsnip/tests/testthat/test-surv_reg_flexsurv.R |only parsnip-1.3.3/parsnip/tests/testthat/test-surv_reg_survreg.R |only parsnip-1.4.0/parsnip/DESCRIPTION | 15 parsnip-1.4.0/parsnip/MD5 | 1095 +++++----- parsnip-1.4.0/parsnip/NEWS.md | 15 parsnip-1.4.0/parsnip/R/aaa-import-standalone-obj-type.R | 29 parsnip-1.4.0/parsnip/R/aaa-import-standalone-types-check.R | 288 +- parsnip-1.4.0/parsnip/R/aaa.R | 49 parsnip-1.4.0/parsnip/R/aaa_archive.R | 8 parsnip-1.4.0/parsnip/R/aaa_models.R | 173 + parsnip-1.4.0/parsnip/R/aaa_multi_predict.R | 4 parsnip-1.4.0/parsnip/R/aaa_quantiles.R | 4 parsnip-1.4.0/parsnip/R/adds.R | 1 parsnip-1.4.0/parsnip/R/arguments.R | 47 parsnip-1.4.0/parsnip/R/augment.R | 53 parsnip-1.4.0/parsnip/R/auto_ml.R | 9 parsnip-1.4.0/parsnip/R/autoplot.R | 39 parsnip-1.4.0/parsnip/R/bag_mars.R | 38 parsnip-1.4.0/parsnip/R/bag_mlp.R | 38 parsnip-1.4.0/parsnip/R/bag_tree.R | 42 parsnip-1.4.0/parsnip/R/bart.R | 52 parsnip-1.4.0/parsnip/R/bart_data.R | 107 parsnip-1.4.0/parsnip/R/boost_tree.R | 331 ++- parsnip-1.4.0/parsnip/R/boost_tree_data.R | 18 parsnip-1.4.0/parsnip/R/c5_rules.R | 26 parsnip-1.4.0/parsnip/R/case_weights.R | 8 parsnip-1.4.0/parsnip/R/control_parsnip.R | 12 parsnip-1.4.0/parsnip/R/convert_data.R | 75 parsnip-1.4.0/parsnip/R/cubist_rules.R | 52 parsnip-1.4.0/parsnip/R/data.R | 1 parsnip-1.4.0/parsnip/R/decision_tree.R | 42 parsnip-1.4.0/parsnip/R/decision_tree_data.R | 37 parsnip-1.4.0/parsnip/R/descriptors.R | 121 - parsnip-1.4.0/parsnip/R/discrim_flexible.R | 57 parsnip-1.4.0/parsnip/R/discrim_linear.R | 30 parsnip-1.4.0/parsnip/R/discrim_quad.R | 13 parsnip-1.4.0/parsnip/R/discrim_regularized.R | 43 parsnip-1.4.0/parsnip/R/engine_docs.R | 68 parsnip-1.4.0/parsnip/R/engines.R | 16 parsnip-1.4.0/parsnip/R/extract.R | 12 parsnip-1.4.0/parsnip/R/fit.R | 139 - parsnip-1.4.0/parsnip/R/fit_helpers.R | 36 parsnip-1.4.0/parsnip/R/gen_additive_mod.R | 34 parsnip-1.4.0/parsnip/R/gen_additive_mod_data.R | 145 - parsnip-1.4.0/parsnip/R/glm_grouped.R | 7 parsnip-1.4.0/parsnip/R/glmnet-engines.R | 102 parsnip-1.4.0/parsnip/R/install_packages.R | 20 parsnip-1.4.0/parsnip/R/linear_reg.R | 40 parsnip-1.4.0/parsnip/R/linear_reg_data.R | 185 - parsnip-1.4.0/parsnip/R/logistic_reg.R | 67 parsnip-1.4.0/parsnip/R/logistic_reg_data.R | 262 +- parsnip-1.4.0/parsnip/R/mars.R | 79 parsnip-1.4.0/parsnip/R/mars_data.R | 42 parsnip-1.4.0/parsnip/R/misc.R | 197 + parsnip-1.4.0/parsnip/R/mlp.R | 173 + parsnip-1.4.0/parsnip/R/mlp_data.R | 178 - parsnip-1.4.0/parsnip/R/model_object_docs.R | 1 parsnip-1.4.0/parsnip/R/multinom_reg.R | 42 parsnip-1.4.0/parsnip/R/multinom_reg_data.R | 121 - parsnip-1.4.0/parsnip/R/naive_Bayes.R | 14 parsnip-1.4.0/parsnip/R/nearest_neighbor.R | 72 parsnip-1.4.0/parsnip/R/nearest_neighbor_data.R | 74 parsnip-1.4.0/parsnip/R/nullmodel.R | 81 parsnip-1.4.0/parsnip/R/nullmodel_data.R | 60 parsnip-1.4.0/parsnip/R/parsnip-package.R | 64 parsnip-1.4.0/parsnip/R/partykit.R | 58 parsnip-1.4.0/parsnip/R/pls.R | 36 parsnip-1.4.0/parsnip/R/poisson_reg.R | 42 parsnip-1.4.0/parsnip/R/predict.R | 118 - parsnip-1.4.0/parsnip/R/predict_class.R | 26 parsnip-1.4.0/parsnip/R/predict_classprob.R | 12 parsnip-1.4.0/parsnip/R/predict_hazard.R | 20 parsnip-1.4.0/parsnip/R/predict_interval.R | 34 parsnip-1.4.0/parsnip/R/predict_linear_pred.R | 7 parsnip-1.4.0/parsnip/R/predict_quantile.R | 29 parsnip-1.4.0/parsnip/R/predict_raw.R | 6 parsnip-1.4.0/parsnip/R/predict_survival.R | 24 parsnip-1.4.0/parsnip/R/print.R | 88 parsnip-1.4.0/parsnip/R/proportional_hazards.R | 78 parsnip-1.4.0/parsnip/R/proportional_hazards_data.R | 1 parsnip-1.4.0/parsnip/R/rand_forest.R | 43 parsnip-1.4.0/parsnip/R/rand_forest_data.R | 498 +++- parsnip-1.4.0/parsnip/R/rand_forest_grf.R |only parsnip-1.4.0/parsnip/R/repair_call.R | 2 parsnip-1.4.0/parsnip/R/rule_fit.R | 45 parsnip-1.4.0/parsnip/R/sparsevctrs.R | 24 parsnip-1.4.0/parsnip/R/standalone-survival.R | 10 parsnip-1.4.0/parsnip/R/surv_reg.R | 53 parsnip-1.4.0/parsnip/R/surv_reg_data.R | 25 parsnip-1.4.0/parsnip/R/survival-censoring-model.R | 35 parsnip-1.4.0/parsnip/R/survival-censoring-weights.R | 45 parsnip-1.4.0/parsnip/R/survival_reg.R | 21 parsnip-1.4.0/parsnip/R/survival_reg_data.R | 1 parsnip-1.4.0/parsnip/R/svm_linear.R | 48 parsnip-1.4.0/parsnip/R/svm_linear_data.R | 58 parsnip-1.4.0/parsnip/R/svm_poly.R | 52 parsnip-1.4.0/parsnip/R/svm_poly_data.R | 34 parsnip-1.4.0/parsnip/R/svm_rbf.R | 47 parsnip-1.4.0/parsnip/R/svm_rbf_data.R | 68 parsnip-1.4.0/parsnip/R/tidy_liblinear.R | 2 parsnip-1.4.0/parsnip/R/translate.R | 27 parsnip-1.4.0/parsnip/R/tunable.R | 29 parsnip-1.4.0/parsnip/R/tune_args.R | 40 parsnip-1.4.0/parsnip/R/type_sum.R | 9 parsnip-1.4.0/parsnip/R/update.R | 20 parsnip-1.4.0/parsnip/R/varying.R | 33 parsnip-1.4.0/parsnip/build/stage23.rdb |binary parsnip-1.4.0/parsnip/build/vignette.rds |binary parsnip-1.4.0/parsnip/data/model_db.rda |binary parsnip-1.4.0/parsnip/inst/add-in/gadget.R | 30 parsnip-1.4.0/parsnip/inst/add-in/parsnip_model_db.R | 97 parsnip-1.4.0/parsnip/inst/doc/parsnip.Rmd | 2 parsnip-1.4.0/parsnip/inst/doc/parsnip.html | 7 parsnip-1.4.0/parsnip/inst/models.tsv | 2 parsnip-1.4.0/parsnip/man/C5_rules.Rd | 2 parsnip-1.4.0/parsnip/man/add_rowindex.Rd | 2 parsnip-1.4.0/parsnip/man/augment.Rd | 23 parsnip-1.4.0/parsnip/man/bart.Rd | 2 parsnip-1.4.0/parsnip/man/boost_tree.Rd | 2 parsnip-1.4.0/parsnip/man/condense_control.Rd | 2 parsnip-1.4.0/parsnip/man/control_parsnip.Rd | 2 parsnip-1.4.0/parsnip/man/ctree_train.Rd | 2 parsnip-1.4.0/parsnip/man/decision_tree.Rd | 2 parsnip-1.4.0/parsnip/man/details_C5_rules_C5.0.Rd | 14 parsnip-1.4.0/parsnip/man/details_auto_ml_h2o.Rd | 24 parsnip-1.4.0/parsnip/man/details_bag_mars_earth.Rd | 15 parsnip-1.4.0/parsnip/man/details_bag_mlp_nnet.Rd | 15 parsnip-1.4.0/parsnip/man/details_bag_tree_C5.0.Rd | 12 parsnip-1.4.0/parsnip/man/details_bag_tree_rpart.Rd | 12 parsnip-1.4.0/parsnip/man/details_bart_dbarts.Rd | 22 parsnip-1.4.0/parsnip/man/details_boost_tree_C5.0.Rd | 16 parsnip-1.4.0/parsnip/man/details_boost_tree_h2o.Rd | 22 parsnip-1.4.0/parsnip/man/details_boost_tree_lightgbm.Rd | 17 parsnip-1.4.0/parsnip/man/details_boost_tree_mboost.Rd | 16 parsnip-1.4.0/parsnip/man/details_boost_tree_spark.Rd | 16 parsnip-1.4.0/parsnip/man/details_boost_tree_xgboost.Rd | 23 parsnip-1.4.0/parsnip/man/details_cubist_rules_Cubist.Rd | 14 parsnip-1.4.0/parsnip/man/details_decision_tree_C5.0.Rd | 16 parsnip-1.4.0/parsnip/man/details_decision_tree_partykit.Rd | 18 parsnip-1.4.0/parsnip/man/details_decision_tree_rpart.Rd | 20 parsnip-1.4.0/parsnip/man/details_decision_tree_spark.Rd | 16 parsnip-1.4.0/parsnip/man/details_discrim_flexible_earth.Rd | 15 parsnip-1.4.0/parsnip/man/details_discrim_linear_MASS.Rd | 16 parsnip-1.4.0/parsnip/man/details_discrim_linear_mda.Rd | 16 parsnip-1.4.0/parsnip/man/details_discrim_linear_sda.Rd | 16 parsnip-1.4.0/parsnip/man/details_discrim_linear_sparsediscrim.Rd | 18 parsnip-1.4.0/parsnip/man/details_discrim_quad_MASS.Rd | 16 parsnip-1.4.0/parsnip/man/details_discrim_quad_sparsediscrim.Rd | 18 parsnip-1.4.0/parsnip/man/details_discrim_regularized_klaR.Rd | 15 parsnip-1.4.0/parsnip/man/details_gen_additive_mod_mgcv.Rd | 19 parsnip-1.4.0/parsnip/man/details_linear_reg_brulee.Rd | 14 parsnip-1.4.0/parsnip/man/details_linear_reg_gee.Rd | 15 parsnip-1.4.0/parsnip/man/details_linear_reg_glm.Rd | 16 parsnip-1.4.0/parsnip/man/details_linear_reg_glmer.Rd | 15 parsnip-1.4.0/parsnip/man/details_linear_reg_glmnet.Rd | 15 parsnip-1.4.0/parsnip/man/details_linear_reg_gls.Rd | 15 parsnip-1.4.0/parsnip/man/details_linear_reg_h2o.Rd | 15 parsnip-1.4.0/parsnip/man/details_linear_reg_keras.Rd | 14 parsnip-1.4.0/parsnip/man/details_linear_reg_lm.Rd | 17 parsnip-1.4.0/parsnip/man/details_linear_reg_lme.Rd | 15 parsnip-1.4.0/parsnip/man/details_linear_reg_lmer.Rd | 15 parsnip-1.4.0/parsnip/man/details_linear_reg_quantreg.Rd | 14 parsnip-1.4.0/parsnip/man/details_linear_reg_spark.Rd | 14 parsnip-1.4.0/parsnip/man/details_linear_reg_stan.Rd | 17 parsnip-1.4.0/parsnip/man/details_linear_reg_stan_glmer.Rd | 16 parsnip-1.4.0/parsnip/man/details_logistic_reg_LiblineaR.Rd | 16 parsnip-1.4.0/parsnip/man/details_logistic_reg_brulee.Rd | 15 parsnip-1.4.0/parsnip/man/details_logistic_reg_gee.Rd | 16 parsnip-1.4.0/parsnip/man/details_logistic_reg_glm.Rd | 17 parsnip-1.4.0/parsnip/man/details_logistic_reg_glmer.Rd | 15 parsnip-1.4.0/parsnip/man/details_logistic_reg_glmnet.Rd | 16 parsnip-1.4.0/parsnip/man/details_logistic_reg_h2o.Rd | 15 parsnip-1.4.0/parsnip/man/details_logistic_reg_keras.Rd | 15 parsnip-1.4.0/parsnip/man/details_logistic_reg_spark.Rd | 15 parsnip-1.4.0/parsnip/man/details_logistic_reg_stan.Rd | 18 parsnip-1.4.0/parsnip/man/details_logistic_reg_stan_glmer.Rd | 18 parsnip-1.4.0/parsnip/man/details_mars_earth.Rd | 17 parsnip-1.4.0/parsnip/man/details_mlp_brulee.Rd | 16 parsnip-1.4.0/parsnip/man/details_mlp_brulee_two_layer.Rd | 16 parsnip-1.4.0/parsnip/man/details_mlp_h2o.Rd | 17 parsnip-1.4.0/parsnip/man/details_mlp_keras.Rd | 18 parsnip-1.4.0/parsnip/man/details_mlp_nnet.Rd | 18 parsnip-1.4.0/parsnip/man/details_multinom_reg_brulee.Rd | 15 parsnip-1.4.0/parsnip/man/details_multinom_reg_glmnet.Rd | 16 parsnip-1.4.0/parsnip/man/details_multinom_reg_h2o.Rd | 15 parsnip-1.4.0/parsnip/man/details_multinom_reg_keras.Rd | 15 parsnip-1.4.0/parsnip/man/details_multinom_reg_nnet.Rd | 16 parsnip-1.4.0/parsnip/man/details_multinom_reg_spark.Rd | 15 parsnip-1.4.0/parsnip/man/details_naive_Bayes_h2o.Rd | 15 parsnip-1.4.0/parsnip/man/details_naive_Bayes_klaR.Rd | 16 parsnip-1.4.0/parsnip/man/details_naive_Bayes_naivebayes.Rd | 15 parsnip-1.4.0/parsnip/man/details_nearest_neighbor_kknn.Rd | 17 parsnip-1.4.0/parsnip/man/details_pls_mixOmics.Rd | 17 parsnip-1.4.0/parsnip/man/details_poisson_reg_gee.Rd | 15 parsnip-1.4.0/parsnip/man/details_poisson_reg_glm.Rd | 15 parsnip-1.4.0/parsnip/man/details_poisson_reg_glmer.Rd | 15 parsnip-1.4.0/parsnip/man/details_poisson_reg_glmnet.Rd | 15 parsnip-1.4.0/parsnip/man/details_poisson_reg_h2o.Rd | 15 parsnip-1.4.0/parsnip/man/details_poisson_reg_hurdle.Rd | 15 parsnip-1.4.0/parsnip/man/details_poisson_reg_stan.Rd | 17 parsnip-1.4.0/parsnip/man/details_poisson_reg_stan_glmer.Rd | 16 parsnip-1.4.0/parsnip/man/details_poisson_reg_zeroinfl.Rd | 15 parsnip-1.4.0/parsnip/man/details_proportional_hazards_glmnet.Rd | 17 parsnip-1.4.0/parsnip/man/details_proportional_hazards_survival.Rd | 16 parsnip-1.4.0/parsnip/man/details_rand_forest_aorsf.Rd | 21 parsnip-1.4.0/parsnip/man/details_rand_forest_grf.Rd |only parsnip-1.4.0/parsnip/man/details_rand_forest_h2o.Rd | 17 parsnip-1.4.0/parsnip/man/details_rand_forest_partykit.Rd | 18 parsnip-1.4.0/parsnip/man/details_rand_forest_randomForest.Rd | 18 parsnip-1.4.0/parsnip/man/details_rand_forest_ranger.Rd | 20 parsnip-1.4.0/parsnip/man/details_rand_forest_spark.Rd | 16 parsnip-1.4.0/parsnip/man/details_rule_fit_h2o.Rd | 17 parsnip-1.4.0/parsnip/man/details_rule_fit_xrf.Rd | 16 parsnip-1.4.0/parsnip/man/details_survival_reg_flexsurv.Rd | 18 parsnip-1.4.0/parsnip/man/details_survival_reg_flexsurvspline.Rd | 18 parsnip-1.4.0/parsnip/man/details_survival_reg_survival.Rd | 18 parsnip-1.4.0/parsnip/man/details_svm_linear_LiblineaR.Rd | 17 parsnip-1.4.0/parsnip/man/details_svm_linear_kernlab.Rd | 17 parsnip-1.4.0/parsnip/man/details_svm_poly_kernlab.Rd | 17 parsnip-1.4.0/parsnip/man/details_svm_rbf_kernlab.Rd | 23 parsnip-1.4.0/parsnip/man/doc-tools.Rd | 2 parsnip-1.4.0/parsnip/man/dot-get_prediction_column_names.Rd | 2 parsnip-1.4.0/parsnip/man/dot-model_param_name_key.Rd | 2 parsnip-1.4.0/parsnip/man/extract-parsnip.Rd | 2 parsnip-1.4.0/parsnip/man/fit.Rd | 2 parsnip-1.4.0/parsnip/man/fit_control.Rd | 2 parsnip-1.4.0/parsnip/man/gen_additive_mod.Rd | 2 parsnip-1.4.0/parsnip/man/get_model_env.Rd | 2 parsnip-1.4.0/parsnip/man/glm_grouped.Rd | 2 parsnip-1.4.0/parsnip/man/has_multi_predict.Rd | 2 parsnip-1.4.0/parsnip/man/linear_reg.Rd | 2 parsnip-1.4.0/parsnip/man/logistic_reg.Rd | 2 parsnip-1.4.0/parsnip/man/mars.Rd | 2 parsnip-1.4.0/parsnip/man/max_mtry_formula.Rd | 2 parsnip-1.4.0/parsnip/man/min_cols.Rd | 2 parsnip-1.4.0/parsnip/man/mlp.Rd | 2 parsnip-1.4.0/parsnip/man/model_db.Rd | 2 parsnip-1.4.0/parsnip/man/model_fit.Rd | 2 parsnip-1.4.0/parsnip/man/multinom_reg.Rd | 2 parsnip-1.4.0/parsnip/man/nearest_neighbor.Rd | 2 parsnip-1.4.0/parsnip/man/null_model.Rd | 29 parsnip-1.4.0/parsnip/man/nullmodel.Rd | 2 parsnip-1.4.0/parsnip/man/parsnip-package.Rd | 2 parsnip-1.4.0/parsnip/man/parsnip_update.Rd | 10 parsnip-1.4.0/parsnip/man/predict.model_fit.Rd | 2 parsnip-1.4.0/parsnip/man/proportional_hazards.Rd | 2 parsnip-1.4.0/parsnip/man/rand_forest.Rd | 2 parsnip-1.4.0/parsnip/man/repair_call.Rd | 2 parsnip-1.4.0/parsnip/man/required_pkgs.model_spec.Rd | 2 parsnip-1.4.0/parsnip/man/rmd/C5_rules_C5.0.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/C5_rules_C5.0.md | 16 parsnip-1.4.0/parsnip/man/rmd/aaa.md |only parsnip-1.4.0/parsnip/man/rmd/auto_ml_h2o.Rmd | 19 parsnip-1.4.0/parsnip/man/rmd/auto_ml_h2o.md | 26 parsnip-1.4.0/parsnip/man/rmd/bag_mars_earth.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/bag_mars_earth.md | 17 parsnip-1.4.0/parsnip/man/rmd/bag_mlp_nnet.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/bag_mlp_nnet.md | 17 parsnip-1.4.0/parsnip/man/rmd/bag_tree_C5.0.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/bag_tree_C5.0.md | 13 parsnip-1.4.0/parsnip/man/rmd/bag_tree_rpart.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/bag_tree_rpart.md | 14 parsnip-1.4.0/parsnip/man/rmd/bart_dbarts.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/bart_dbarts.md | 23 parsnip-1.4.0/parsnip/man/rmd/boost_tree_C5.0.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/boost_tree_C5.0.md | 18 parsnip-1.4.0/parsnip/man/rmd/boost_tree_h2o.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/boost_tree_h2o.md | 24 parsnip-1.4.0/parsnip/man/rmd/boost_tree_lightgbm.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/boost_tree_lightgbm.md | 19 parsnip-1.4.0/parsnip/man/rmd/boost_tree_mboost.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/boost_tree_mboost.md | 18 parsnip-1.4.0/parsnip/man/rmd/boost_tree_spark.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/boost_tree_spark.md | 18 parsnip-1.4.0/parsnip/man/rmd/boost_tree_xgboost.Rmd | 13 parsnip-1.4.0/parsnip/man/rmd/boost_tree_xgboost.md | 22 parsnip-1.4.0/parsnip/man/rmd/cubist_rules_Cubist.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/cubist_rules_Cubist.md | 16 parsnip-1.4.0/parsnip/man/rmd/decision_tree_C5.0.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/decision_tree_C5.0.md | 18 parsnip-1.4.0/parsnip/man/rmd/decision_tree_partykit.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/decision_tree_partykit.md | 20 parsnip-1.4.0/parsnip/man/rmd/decision_tree_rpart.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/decision_tree_rpart.md | 22 parsnip-1.4.0/parsnip/man/rmd/decision_tree_spark.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/decision_tree_spark.md | 18 parsnip-1.4.0/parsnip/man/rmd/discrim_flexible_earth.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/discrim_flexible_earth.md | 17 parsnip-1.4.0/parsnip/man/rmd/discrim_linear_MASS.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/discrim_linear_MASS.md | 18 parsnip-1.4.0/parsnip/man/rmd/discrim_linear_mda.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/discrim_linear_mda.md | 18 parsnip-1.4.0/parsnip/man/rmd/discrim_linear_sda.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/discrim_linear_sda.md | 18 parsnip-1.4.0/parsnip/man/rmd/discrim_linear_sparsediscrim.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/discrim_linear_sparsediscrim.md | 20 parsnip-1.4.0/parsnip/man/rmd/discrim_quad_MASS.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/discrim_quad_MASS.md | 18 parsnip-1.4.0/parsnip/man/rmd/discrim_quad_sparsediscrim.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/discrim_quad_sparsediscrim.md | 20 parsnip-1.4.0/parsnip/man/rmd/discrim_regularized_klaR.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/discrim_regularized_klaR.md | 17 parsnip-1.4.0/parsnip/man/rmd/gen_additive_mod_mgcv.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/gen_additive_mod_mgcv.md | 21 parsnip-1.4.0/parsnip/man/rmd/linear_reg_brulee.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/linear_reg_brulee.md | 16 parsnip-1.4.0/parsnip/man/rmd/linear_reg_gee.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/linear_reg_gee.md | 17 parsnip-1.4.0/parsnip/man/rmd/linear_reg_glm.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/linear_reg_glm.md | 18 parsnip-1.4.0/parsnip/man/rmd/linear_reg_glmer.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/linear_reg_glmer.md | 17 parsnip-1.4.0/parsnip/man/rmd/linear_reg_glmnet.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/linear_reg_glmnet.md | 17 parsnip-1.4.0/parsnip/man/rmd/linear_reg_gls.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/linear_reg_gls.md | 17 parsnip-1.4.0/parsnip/man/rmd/linear_reg_h2o.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/linear_reg_h2o.md | 17 parsnip-1.4.0/parsnip/man/rmd/linear_reg_keras.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/linear_reg_keras.md | 16 parsnip-1.4.0/parsnip/man/rmd/linear_reg_lm.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/linear_reg_lm.md | 19 parsnip-1.4.0/parsnip/man/rmd/linear_reg_lme.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/linear_reg_lme.md | 17 parsnip-1.4.0/parsnip/man/rmd/linear_reg_lmer.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/linear_reg_lmer.md | 17 parsnip-1.4.0/parsnip/man/rmd/linear_reg_quantreg.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/linear_reg_quantreg.md | 16 parsnip-1.4.0/parsnip/man/rmd/linear_reg_spark.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/linear_reg_spark.md | 16 parsnip-1.4.0/parsnip/man/rmd/linear_reg_stan.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/linear_reg_stan.md | 19 parsnip-1.4.0/parsnip/man/rmd/linear_reg_stan_glmer.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/linear_reg_stan_glmer.md | 18 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_LiblineaR.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_LiblineaR.md | 18 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_brulee.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_brulee.md | 17 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_gee.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_gee.md | 18 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_glm.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_glm.md | 19 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_glmer.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_glmer.md | 17 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_glmnet.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_glmnet.md | 18 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_h2o.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_h2o.md | 16 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_keras.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_keras.md | 17 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_spark.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_spark.md | 17 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_stan.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_stan.md | 20 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_stan_glmer.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/logistic_reg_stan_glmer.md | 20 parsnip-1.4.0/parsnip/man/rmd/mars_earth.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/mars_earth.md | 19 parsnip-1.4.0/parsnip/man/rmd/mlp_brulee.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/mlp_brulee.md | 18 parsnip-1.4.0/parsnip/man/rmd/mlp_brulee_two_layer.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/mlp_brulee_two_layer.md | 18 parsnip-1.4.0/parsnip/man/rmd/mlp_h2o.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/mlp_h2o.md | 18 parsnip-1.4.0/parsnip/man/rmd/mlp_keras.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/mlp_keras.md | 20 parsnip-1.4.0/parsnip/man/rmd/mlp_nnet.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/mlp_nnet.md | 20 parsnip-1.4.0/parsnip/man/rmd/multinom_reg_brulee.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/multinom_reg_brulee.md | 17 parsnip-1.4.0/parsnip/man/rmd/multinom_reg_glmnet.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/multinom_reg_glmnet.md | 18 parsnip-1.4.0/parsnip/man/rmd/multinom_reg_h2o.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/multinom_reg_h2o.md | 17 parsnip-1.4.0/parsnip/man/rmd/multinom_reg_keras.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/multinom_reg_keras.md | 17 parsnip-1.4.0/parsnip/man/rmd/multinom_reg_nnet.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/multinom_reg_nnet.md | 18 parsnip-1.4.0/parsnip/man/rmd/multinom_reg_spark.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/multinom_reg_spark.md | 16 parsnip-1.4.0/parsnip/man/rmd/naive_Bayes_h2o.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/naive_Bayes_h2o.md | 17 parsnip-1.4.0/parsnip/man/rmd/naive_Bayes_klaR.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/naive_Bayes_klaR.md | 18 parsnip-1.4.0/parsnip/man/rmd/naive_Bayes_naivebayes.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/naive_Bayes_naivebayes.md | 17 parsnip-1.4.0/parsnip/man/rmd/nearest_neighbor_kknn.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/nearest_neighbor_kknn.md | 19 parsnip-1.4.0/parsnip/man/rmd/null-model.Rmd | 9 parsnip-1.4.0/parsnip/man/rmd/null-model.md | 18 parsnip-1.4.0/parsnip/man/rmd/pls_mixOmics.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/pls_mixOmics.md | 19 parsnip-1.4.0/parsnip/man/rmd/poisson_reg_gee.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/poisson_reg_gee.md | 17 parsnip-1.4.0/parsnip/man/rmd/poisson_reg_glm.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/poisson_reg_glm.md | 17 parsnip-1.4.0/parsnip/man/rmd/poisson_reg_glmer.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/poisson_reg_glmer.md | 17 parsnip-1.4.0/parsnip/man/rmd/poisson_reg_glmnet.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/poisson_reg_glmnet.md | 17 parsnip-1.4.0/parsnip/man/rmd/poisson_reg_h2o.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/poisson_reg_h2o.md | 16 parsnip-1.4.0/parsnip/man/rmd/poisson_reg_hurdle.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/poisson_reg_hurdle.md | 17 parsnip-1.4.0/parsnip/man/rmd/poisson_reg_stan.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/poisson_reg_stan.md | 19 parsnip-1.4.0/parsnip/man/rmd/poisson_reg_stan_glmer.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/poisson_reg_stan_glmer.md | 18 parsnip-1.4.0/parsnip/man/rmd/poisson_reg_zeroinfl.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/poisson_reg_zeroinfl.md | 17 parsnip-1.4.0/parsnip/man/rmd/proportional_hazards_glmnet.Rmd | 12 parsnip-1.4.0/parsnip/man/rmd/proportional_hazards_glmnet.md | 20 parsnip-1.4.0/parsnip/man/rmd/proportional_hazards_survival.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/proportional_hazards_survival.md | 18 parsnip-1.4.0/parsnip/man/rmd/rand_forest_aorsf.Rmd | 12 parsnip-1.4.0/parsnip/man/rmd/rand_forest_aorsf.md | 23 parsnip-1.4.0/parsnip/man/rmd/rand_forest_grf.Rmd |only parsnip-1.4.0/parsnip/man/rmd/rand_forest_grf.md |only parsnip-1.4.0/parsnip/man/rmd/rand_forest_h2o.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/rand_forest_h2o.md | 18 parsnip-1.4.0/parsnip/man/rmd/rand_forest_partykit.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/rand_forest_partykit.md | 20 parsnip-1.4.0/parsnip/man/rmd/rand_forest_randomForest.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/rand_forest_randomForest.md | 19 parsnip-1.4.0/parsnip/man/rmd/rand_forest_ranger.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/rand_forest_ranger.md | 21 parsnip-1.4.0/parsnip/man/rmd/rand_forest_spark.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/rand_forest_spark.md | 17 parsnip-1.4.0/parsnip/man/rmd/rule_fit_h2o.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/rule_fit_h2o.md | 19 parsnip-1.4.0/parsnip/man/rmd/rule_fit_xrf.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/rule_fit_xrf.md | 18 parsnip-1.4.0/parsnip/man/rmd/survival_reg_flexsurv.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/survival_reg_flexsurv.md | 19 parsnip-1.4.0/parsnip/man/rmd/survival_reg_flexsurvspline.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/survival_reg_flexsurvspline.md | 19 parsnip-1.4.0/parsnip/man/rmd/survival_reg_survival.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/survival_reg_survival.md | 20 parsnip-1.4.0/parsnip/man/rmd/svm_linear_LiblineaR.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/svm_linear_LiblineaR.md | 19 parsnip-1.4.0/parsnip/man/rmd/svm_linear_kernlab.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/svm_linear_kernlab.md | 20 parsnip-1.4.0/parsnip/man/rmd/svm_poly_kernlab.Rmd | 10 parsnip-1.4.0/parsnip/man/rmd/svm_poly_kernlab.md | 19 parsnip-1.4.0/parsnip/man/rmd/svm_rbf_kernlab.Rmd | 11 parsnip-1.4.0/parsnip/man/rmd/svm_rbf_kernlab.md | 25 parsnip-1.4.0/parsnip/man/rmd/template-bundle.md |only parsnip-1.4.0/parsnip/man/rmd/template-butcher.md |only parsnip-1.4.0/parsnip/man/rmd/template-censored-linear-predictor.md |only parsnip-1.4.0/parsnip/man/rmd/template-early-stopping.md |only parsnip-1.4.0/parsnip/man/rmd/template-gee-silent.md |only parsnip-1.4.0/parsnip/man/rmd/template-h2o-glm-penalty.md |only parsnip-1.4.0/parsnip/man/rmd/template-h2o-init.md |only parsnip-1.4.0/parsnip/man/rmd/template-makes-dummies.md |only parsnip-1.4.0/parsnip/man/rmd/template-mtry-prop.md |only parsnip-1.4.0/parsnip/man/rmd/template-no-case-weights.md |only parsnip-1.4.0/parsnip/man/rmd/template-no-pooling.md |only parsnip-1.4.0/parsnip/man/rmd/template-same-scale.md |only parsnip-1.4.0/parsnip/man/rmd/template-spark-notes.md |only parsnip-1.4.0/parsnip/man/rmd/template-survival-mean.md |only parsnip-1.4.0/parsnip/man/rmd/template-survival-median.md |only parsnip-1.4.0/parsnip/man/rmd/template-tree-split-factors.md |only parsnip-1.4.0/parsnip/man/rmd/template-uses-case-weights.md |only parsnip-1.4.0/parsnip/man/rmd/template-uses-sparse-data.md |only parsnip-1.4.0/parsnip/man/rmd/template-zv-conditional.md |only parsnip-1.4.0/parsnip/man/rmd/template-zv.md |only parsnip-1.4.0/parsnip/man/rule_fit.Rd | 2 parsnip-1.4.0/parsnip/man/set_args.Rd | 2 parsnip-1.4.0/parsnip/man/set_engine.Rd | 2 parsnip-1.4.0/parsnip/man/set_new_model.Rd | 2 parsnip-1.4.0/parsnip/man/show_engines.Rd | 2 parsnip-1.4.0/parsnip/man/survival_reg.Rd | 2 parsnip-1.4.0/parsnip/man/svm_linear.Rd | 2 parsnip-1.4.0/parsnip/man/svm_poly.Rd | 2 parsnip-1.4.0/parsnip/man/svm_rbf.Rd | 2 parsnip-1.4.0/parsnip/man/tidy.nullmodel.Rd | 2 parsnip-1.4.0/parsnip/man/translate.Rd | 6 parsnip-1.4.0/parsnip/man/varying_args.Rd | 2 parsnip-1.4.0/parsnip/tests/testthat.R | 1 parsnip-1.4.0/parsnip/tests/testthat/_snaps/adds.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/args_and_modes.md | 2 parsnip-1.4.0/parsnip/tests/testthat/_snaps/boost_tree.md | 40 parsnip-1.4.0/parsnip/tests/testthat/_snaps/boost_tree_C5.0.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/boost_tree_xgboost.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/convert_data.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/decision_tree.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/descriptors.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/extract.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/failed_models.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/fit_interfaces.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/gen_additive_model.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/linear_reg.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/linear_reg_quantreg.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/logistic_reg.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/mars.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/misc.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/mlp.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/mlp_keras.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/mlp_nnet.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/multinom_reg.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/nearest_neighbor_kknn.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/nullmodel.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/predict_formats.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/rand_forest.md | 2 parsnip-1.4.0/parsnip/tests/testthat/_snaps/rand_forest_ranger.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/registration.md | 45 parsnip-1.4.0/parsnip/tests/testthat/_snaps/sparsevctrs.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/svm_linear.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/svm_poly.md |only parsnip-1.4.0/parsnip/tests/testthat/_snaps/svm_rbf.md |only parsnip-1.4.0/parsnip/tests/testthat/helper-extract_parameter_set.R | 9 parsnip-1.4.0/parsnip/tests/testthat/helper-objects.R | 16 parsnip-1.4.0/parsnip/tests/testthat/test-args_and_modes.R | 33 parsnip-1.4.0/parsnip/tests/testthat/test-augment.R | 73 parsnip-1.4.0/parsnip/tests/testthat/test-bag_mars.R | 2 parsnip-1.4.0/parsnip/tests/testthat/test-bag_mlp.R | 2 parsnip-1.4.0/parsnip/tests/testthat/test-bag_tree.R | 2 parsnip-1.4.0/parsnip/tests/testthat/test-boost_tree_C5.0.R | 70 parsnip-1.4.0/parsnip/tests/testthat/test-boost_tree_xgboost.R | 406 ++- parsnip-1.4.0/parsnip/tests/testthat/test-c5_rules.R | 2 parsnip-1.4.0/parsnip/tests/testthat/test-case-weights.R | 19 parsnip-1.4.0/parsnip/tests/testthat/test-condense_control.R | 4 parsnip-1.4.0/parsnip/tests/testthat/test-convert_data.R | 228 +- parsnip-1.4.0/parsnip/tests/testthat/test-cubist_rules.R | 2 parsnip-1.4.0/parsnip/tests/testthat/test-decision_tree.R | 9 parsnip-1.4.0/parsnip/tests/testthat/test-descriptors.R | 82 parsnip-1.4.0/parsnip/tests/testthat/test-discrim_flexible.R | 2 parsnip-1.4.0/parsnip/tests/testthat/test-discrim_linear.R | 2 parsnip-1.4.0/parsnip/tests/testthat/test-discrim_quad.R | 2 parsnip-1.4.0/parsnip/tests/testthat/test-discrim_regularized.R | 2 parsnip-1.4.0/parsnip/tests/testthat/test-extract.R | 17 parsnip-1.4.0/parsnip/tests/testthat/test-failed_models.R | 33 parsnip-1.4.0/parsnip/tests/testthat/test-fit_interfaces.R | 84 parsnip-1.4.0/parsnip/tests/testthat/test-gen_additive_model.R | 32 parsnip-1.4.0/parsnip/tests/testthat/test-glm_grouped.R | 6 parsnip-1.4.0/parsnip/tests/testthat/test-linear_reg.R | 104 parsnip-1.4.0/parsnip/tests/testthat/test-linear_reg_keras.R | 21 parsnip-1.4.0/parsnip/tests/testthat/test-linear_reg_quantreg.R | 36 parsnip-1.4.0/parsnip/tests/testthat/test-logistic_reg.R | 93 parsnip-1.4.0/parsnip/tests/testthat/test-logistic_reg_keras.R | 24 parsnip-1.4.0/parsnip/tests/testthat/test-mars.R | 111 - parsnip-1.4.0/parsnip/tests/testthat/test-misc.R | 44 parsnip-1.4.0/parsnip/tests/testthat/test-mlp.R | 20 parsnip-1.4.0/parsnip/tests/testthat/test-mlp_keras.R | 113 - parsnip-1.4.0/parsnip/tests/testthat/test-mlp_nnet.R | 45 parsnip-1.4.0/parsnip/tests/testthat/test-model_basics.R | 2 parsnip-1.4.0/parsnip/tests/testthat/test-multinom_reg.R | 10 parsnip-1.4.0/parsnip/tests/testthat/test-multinom_reg_keras.R | 16 parsnip-1.4.0/parsnip/tests/testthat/test-multinom_reg_nnet.R | 19 parsnip-1.4.0/parsnip/tests/testthat/test-naive_Bayes.R | 2 parsnip-1.4.0/parsnip/tests/testthat/test-nearest_neighbor_kknn.R | 66 parsnip-1.4.0/parsnip/tests/testthat/test-nullmodel.R | 113 - parsnip-1.4.0/parsnip/tests/testthat/test-packages.R | 4 parsnip-1.4.0/parsnip/tests/testthat/test-partykit.R | 56 parsnip-1.4.0/parsnip/tests/testthat/test-pls.R | 2 parsnip-1.4.0/parsnip/tests/testthat/test-poisson_reg.R | 2 parsnip-1.4.0/parsnip/tests/testthat/test-predict_formats.R | 117 - parsnip-1.4.0/parsnip/tests/testthat/test-print.R | 6 parsnip-1.4.0/parsnip/tests/testthat/test-proportional_hazards.R | 2 parsnip-1.4.0/parsnip/tests/testthat/test-rand_forest.R | 18 parsnip-1.4.0/parsnip/tests/testthat/test-rand_forest_ranger.R | 201 + parsnip-1.4.0/parsnip/tests/testthat/test-re_registration.R | 24 parsnip-1.4.0/parsnip/tests/testthat/test-registration.R | 127 - parsnip-1.4.0/parsnip/tests/testthat/test-rule_fit.R | 2 parsnip-1.4.0/parsnip/tests/testthat/test-sparsevctrs.R | 21 parsnip-1.4.0/parsnip/tests/testthat/test-survival-censoring-weights.R | 2 parsnip-1.4.0/parsnip/tests/testthat/test-survival_reg.R | 2 parsnip-1.4.0/parsnip/tests/testthat/test-svm_linear.R | 157 - parsnip-1.4.0/parsnip/tests/testthat/test-svm_poly.R | 59 parsnip-1.4.0/parsnip/tests/testthat/test-svm_rbf.R | 74 parsnip-1.4.0/parsnip/tests/testthat/test-translate.R | 115 - parsnip-1.4.0/parsnip/tests/testthat/test-tunable.R | 12 parsnip-1.4.0/parsnip/tests/testthat/test-update.R | 12 parsnip-1.4.0/parsnip/tests/testthat/test-varying.R | 18 parsnip-1.4.0/parsnip/vignettes/parsnip.Rmd | 2 576 files changed, 10896 insertions(+), 4059 deletions(-)
Title: Operations for Riemannian Manifolds
Description: Implements operations for Riemannian manifolds, e.g., geodesic distance, Riemannian metric, exponential and logarithm maps, etc. Also incorporates random object generator on the manifolds. See Dai, Lin, and Müller (2021) <doi:10.1111/biom.13385>.
Author: Xiongtao Dai [aut, cre, cph],
Zhenhua Lin [aut]
Maintainer: Xiongtao Dai <xiongtao.dai@hotmail.com>
This is a re-admission after prior archival of version 0.1.1 dated 2022-10-04
Diff between manifold versions 0.1.1 dated 2022-10-04 and 0.1.2 dated 2025-12-01
DESCRIPTION | 13 ++++++------- MD5 | 6 +++--- R/pkgname.R | 7 +++---- man/manifold.Rd | 5 +++-- 4 files changed, 15 insertions(+), 16 deletions(-)
Title: Fast Extraction from Raster Datasets using Polygons
Description: Quickly and accurately summarizes raster values over polygonal areas ("zonal statistics").
Author: Daniel Baston [aut, cre],
ISciences, LLC [cph]
Maintainer: Daniel Baston <dbaston@isciences.com>
Diff between exactextractr versions 0.10.0 dated 2023-09-20 and 0.10.1 dated 2025-12-01
DESCRIPTION | 10 MD5 | 39 +- NEWS.md | 8 R/exact_extract.R | 18 + R/exact_extract_helpers.R | 2 build/vignette.rds |binary configure | 18 - inst/doc/vig1_population.R | 12 inst/doc/vig1_population.Rmd | 6 inst/doc/vig1_population.html | 401 ++++++++++++++++---------- inst/doc/vig2_categorical.R | 6 inst/doc/vig2_categorical.Rmd | 2 inst/doc/vig2_categorical.html | 433 ++++++++++++++++------------- src/Makevars.in | 1 src/Makevars.ucrt | 3 src/Makevars.win | 3 src/exactextract/src/raster.h | 9 tests/testthat/test_exact_extract_errors.R | 13 tests/testthat/test_num_expected_args.R |only vignettes/vig1_population.Rmd | 6 vignettes/vig2_categorical.Rmd | 2 21 files changed, 591 insertions(+), 401 deletions(-)
Title: Large Language Model Evaluation
Description: A port of 'Inspect', a widely adopted 'Python' framework for
large language model evaluation. Specifically aimed at 'ellmer' users
who want to measure the effectiveness of their large language model-based
products, the package supports prompt engineering, tool usage,
multi-turn dialog, and model graded evaluations.
Author: Simon Couch [aut, cre] ,
Max Kuhn [ctb],
Hadley Wickham [ctb] ,
Mine Cetinkaya-Rundel [ctb] ,
Posit Software, PBC [cph, fnd]
Maintainer: Simon Couch <simon.couch@posit.co>
Diff between vitals versions 0.1.0 dated 2025-06-24 and 0.2.0 dated 2025-12-01
vitals-0.1.0/vitals/build |only vitals-0.1.0/vitals/inst/doc |only vitals-0.1.0/vitals/vignettes |only vitals-0.2.0/vitals/DESCRIPTION | 23 vitals-0.2.0/vitals/MD5 | 139 vitals-0.2.0/vitals/NEWS.md | 71 vitals-0.2.0/vitals/R/bind.R | 4 vitals-0.2.0/vitals/R/bundle.R | 8 vitals-0.2.0/vitals/R/scorer-detect.R | 60 vitals-0.2.0/vitals/R/scorer-model.R | 44 vitals-0.2.0/vitals/R/solver.R | 12 vitals-0.2.0/vitals/R/task.R | 94 vitals-0.2.0/vitals/R/translate-events.R | 564 vitals-0.2.0/vitals/R/translate-messages.R | 56 vitals-0.2.0/vitals/R/translate-utils.R | 110 vitals-0.2.0/vitals/R/translate.R | 101 vitals-0.2.0/vitals/R/utils.R | 27 vitals-0.2.0/vitals/R/view.R | 12 vitals-0.2.0/vitals/R/vitals-package.R | 4 vitals-0.2.0/vitals/README.md | 4 vitals-0.2.0/vitals/inst/README.md | 4 vitals-0.2.0/vitals/inst/dist/assets/index.css | 2849 vitals-0.2.0/vitals/inst/dist/assets/index.js |173997 ++++++++--- vitals-0.2.0/vitals/inst/regenerate-example-objects.R | 10 vitals-0.2.0/vitals/inst/test/example-task.rda |binary vitals-0.2.0/vitals/inst/test/inspect/image.R |only vitals-0.2.0/vitals/inst/test/inspect/image.py |only vitals-0.2.0/vitals/inst/test/inspect/images |only vitals-0.2.0/vitals/inst/test/solver.rda |binary vitals-0.2.0/vitals/inst/test/x.png |only vitals-0.2.0/vitals/man/Task.Rd | 12 vitals-0.2.0/vitals/man/generate.Rd | 5 vitals-0.2.0/vitals/man/scorer_detect.Rd | 6 vitals-0.2.0/vitals/man/scorer_model.Rd | 6 vitals-0.2.0/vitals/man/vitals-package.Rd | 2 vitals-0.2.0/vitals/man/vitals_bind.Rd | 4 vitals-0.2.0/vitals/man/vitals_bundle.Rd | 4 vitals-0.2.0/vitals/man/vitals_view.Rd | 7 vitals-0.2.0/vitals/tests/testthat/_snaps/task.md | 16 vitals-0.2.0/vitals/tests/testthat/_snaps/translate.md | 7 vitals-0.2.0/vitals/tests/testthat/_vcr |only vitals-0.2.0/vitals/tests/testthat/helper-valid_log.R | 20 vitals-0.2.0/vitals/tests/testthat/test-bind.R | 1 vitals-0.2.0/vitals/tests/testthat/test-scorer-detect.R | 137 vitals-0.2.0/vitals/tests/testthat/test-scorer-model.R | 49 vitals-0.2.0/vitals/tests/testthat/test-solver.R | 3 vitals-0.2.0/vitals/tests/testthat/test-task.R | 382 vitals-0.2.0/vitals/tests/testthat/test-translate-events.R | 51 vitals-0.2.0/vitals/tests/testthat/test-translate-messages.R | 83 vitals-0.2.0/vitals/tests/testthat/test-translate-utils.R | 2 vitals-0.2.0/vitals/tests/testthat/test-translate.R | 85 vitals-0.2.0/vitals/tests/testthat/test-utils.R | 7 52 files changed, 133221 insertions(+), 45861 deletions(-)
Title: Interactive Data Tables for R
Description: Interactive data tables for R, based on the 'React Table'
JavaScript library. Provides an HTML widget that can be used in 'R Markdown'
or 'Quarto' documents, 'Shiny' applications, or viewed from an R console.
Author: Greg Lin [aut, cre],
Tanner Linsley [ctb, cph] ,
Emotion team and other contributors [ctb, cph] ,
Kent Russell [ctb, cph] ,
Ramnath Vaidyanathan [ctb, cph] ,
Joe Cheng [ctb, cph] ,
JJ Allaire [ctb, cph] ,
Yihui Xie [ctb, cph] ,
Kenton Russell [ctb, c [...truncated...]
Maintainer: Greg Lin <glin@glin.io>
Diff between reactable versions 0.4.4 dated 2023-03-12 and 0.4.5 dated 2025-12-01
DESCRIPTION | 6 +-- MD5 | 10 +++--- NEWS.md | 12 ++----- inst/htmlwidgets/reactable.yaml | 2 - tests/testthat/_snaps/reactable.md | 18 +++++------ tests/testthat/test-reactable.R | 57 ++++++++++++++++++++++++------------- 6 files changed, 59 insertions(+), 46 deletions(-)
Title: Policy Learning
Description: Package for learning and evaluating (subgroup) policies via doubly robust loss functions. Policy learning methods include doubly robust blip/conditional average treatment effect learning and sequential policy tree learning. Methods for (subgroup) policy evaluation include doubly robust cross-fitting and online estimation/sequential validation. See Nordland and Holst (2022) <doi:10.48550/arXiv.2212.02335> for documentation and references.
Author: Andreas Nordland [aut, cre],
Klaus Holst [aut]
Maintainer: Andreas Nordland <andreasnordland@gmail.com>
Diff between polle versions 1.6.0 dated 2025-10-30 and 1.6.1 dated 2025-12-01
DESCRIPTION | 6 MD5 | 40 +- NEWS.md | 3 R/c_models.R | 2 R/estimate_target.R | 24 - R/m_function.R | 21 - R/policy_data.R | 118 +++---- R/policy_data_functions.R | 22 - R/policy_eval.R | 4 README.md |only inst/doc/policy_data.html | 14 inst/doc/policy_eval.html | 14 inst/doc/policy_learn.html | 14 inst/doc/right_censoring.Rmd | 34 ++ inst/doc/right_censoring.html | 33 +- man/figures/logo.png |only man/policy_data.Rd | 105 ++---- man/polle-package.Rd | 2 tests/testthat/test-policy_data-functions.R | 10 tests/testthat/test-policy_data.R | 5 tests/testthat/test-policy_eval-censoring.R | 461 ++++++++++++++++++++++++++-- vignettes/right_censoring.Rmd | 34 ++ 22 files changed, 726 insertions(+), 240 deletions(-)
Title: Non-Parametric Bayesian Multiple Imputation for Categorical Data
Description: These routines create multiple imputations of missing at random categorical data, and create multiply imputed synthesis of categorical data, with or without structural zeros. Imputations and syntheses are based on Dirichlet process mixtures of multinomial distributions, which is a non-parametric Bayesian modeling approach that allows for flexible joint modeling, described in Manrique-Vallier and Reiter (2014) <doi:10.1080/10618600.2013.844700>.
Author: Quanli Wang [aut],
Daniel Manrique-Vallier [aut],
Jerome P. Reiter [aut],
Jingchen Hu [aut, cre]
Maintainer: Jingchen Hu <jingchen.monika.hu@gmail.com>
Diff between NPBayesImputeCat versions 0.5 dated 2022-10-03 and 0.6 dated 2025-12-01
DESCRIPTION | 28 ++++++++++++++++++++++------ MD5 | 8 ++++---- NAMESPACE | 1 + demo/example.R | 10 +++++++--- man/Lcm.Rd | 4 ++-- 5 files changed, 36 insertions(+), 15 deletions(-)
More information about NPBayesImputeCat at CRAN
Permanent link
Title: Estimation Methods for Causal Inference Based on Inverse
Probability Weighting and Doubly Robust Estimation
Description: Various estimators of causal effects based on inverse probability weighting, doubly robust estimation, and double machine learning. Specifically, the package includes methods for estimating average treatment effects, direct and indirect effects in causal mediation analysis, and dynamic treatment effects. The models refer to studies of Froelich (2007) <doi:10.1016/j.jeconom.2006.06.004>, Huber (2012) <doi:10.3102/1076998611411917>, Huber (2014) <doi:10.1080/07474938.2013.806197>, Huber (2014) <doi:10.1002/jae.2341>, Froelich and Huber (2017) <doi:10.1111/rssb.12232>, Hsu, Huber, Lee, and Lettry (2020) <doi:10.1002/jae.2765>, and others.
Author: Hugo Bodory [aut, cre] ,
Martin Huber [aut] ,
Jannis Kueck [aut]
Maintainer: Hugo Bodory <hugo.bodory@unisg.ch>
Diff between causalweight versions 1.1.3 dated 2025-03-26 and 1.1.4 dated 2025-12-01
DESCRIPTION | 14 +++++++------- MD5 | 40 ++++++++++++++++++++-------------------- R/ATETDML.R | 4 ++-- R/RDDcovar.R | 4 ++-- R/didDML.R | 4 ++-- R/didcontDML.R | 4 ++-- R/didcontDMLpanel.R | 8 ++++---- R/functions.R | 33 ++++++++++++++++++++++----------- R/medDML.R | 4 ++-- R/paneltestDML.R | 1 - R/rkd.R | 4 ++-- R/testmedident.R | 2 +- R/treatselDML.R | 4 ++-- man/ATETDML.Rd | 2 +- man/didDML.Rd | 2 +- man/didcontDML.Rd | 2 +- man/didcontDMLpanel.Rd | 2 +- man/medDML.Rd | 4 ++-- man/paneltestDML.Rd | 1 - man/rkd.Rd | 4 ++-- man/treatselDML.Rd | 4 ++-- 21 files changed, 78 insertions(+), 69 deletions(-)
Title: Parse XML
Description: Bindings to 'libxml2' for working with XML data using a simple,
consistent interface based on 'XPath' expressions. Also supports XML schema
validation; for 'XSLT' transformations see the 'xslt' package.
Author: Hadley Wickham [aut],
Jim Hester [aut],
Jeroen Ooms [aut, cre],
Posit Software, PBC [cph, fnd],
R Foundation [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between xml2 versions 1.5.0 dated 2025-11-17 and 1.5.1 dated 2025-12-01
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 4 ++++ build/partial.rdb |binary cleanup | 2 +- configure | 9 ++++++--- inst/doc/modification.html | 12 ++++++------ src/xml2_init.c | 11 +++++++---- 8 files changed, 34 insertions(+), 24 deletions(-)
Title: Generalized Propensity Score Estimation and Matching for
Multiple Groups
Description: Implements the Vector Matching algorithm to match multiple
treatment groups based on previously estimated generalized propensity
scores. The package includes tools for visualizing initial confounder
imbalances, estimating treatment assignment probabilities using various
methods, defining the common support region, performing matching across
multiple groups, and evaluating matching quality. For more details, see
Lopez and Gutman (2017) <doi:10.1214/17-STS612>.
Author: Mateusz Kolek [aut, cre, cph]
Maintainer: Mateusz Kolek <mati.kolek13@gmail.com>
Diff between vecmatch versions 1.2.0 dated 2025-07-08 and 1.3.0 dated 2025-12-01
vecmatch-1.2.0/vecmatch/build/partial.rdb |only vecmatch-1.2.0/vecmatch/man/vecmatch.Rd |only vecmatch-1.3.0/vecmatch/DESCRIPTION | 17 vecmatch-1.3.0/vecmatch/MD5 | 97 vecmatch-1.3.0/vecmatch/NAMESPACE | 32 vecmatch-1.3.0/vecmatch/NEWS.md | 26 vecmatch-1.3.0/vecmatch/R/balqual.R | 300 - vecmatch-1.3.0/vecmatch/R/chk-utils.R | 113 vecmatch-1.3.0/vecmatch/R/csregion.R | 365 + vecmatch-1.3.0/vecmatch/R/estimate_gps.R | 407 + vecmatch-1.3.0/vecmatch/R/estimate_gps_multinom.R | 1 vecmatch-1.3.0/vecmatch/R/match_gps.R | 387 + vecmatch-1.3.0/vecmatch/R/methods.R | 2 vecmatch-1.3.0/vecmatch/R/mosaic.R | 874 +-- vecmatch-1.3.0/vecmatch/R/optimize_gps.R | 2555 ++++++---- vecmatch-1.3.0/vecmatch/R/plot_utils.R | 85 vecmatch-1.3.0/vecmatch/R/raincloud.R | 1255 ++-- vecmatch-1.3.0/vecmatch/R/utils.R | 121 vecmatch-1.3.0/vecmatch/R/vecmatch-package.R | 34 vecmatch-1.3.0/vecmatch/README.md | 61 vecmatch-1.3.0/vecmatch/build/vignette.rds |binary vecmatch-1.3.0/vecmatch/data/cancer.rda |binary vecmatch-1.3.0/vecmatch/inst/WORDLIST | 9 vecmatch-1.3.0/vecmatch/inst/doc/optimizing-matching.R | 51 vecmatch-1.3.0/vecmatch/inst/doc/optimizing-matching.Rmd | 75 vecmatch-1.3.0/vecmatch/inst/doc/optimizing-matching.html | 297 - vecmatch-1.3.0/vecmatch/inst/doc/vecmatch.html | 55 vecmatch-1.3.0/vecmatch/man/balqual.Rd | 17 vecmatch-1.3.0/vecmatch/man/cancer.Rd | 12 vecmatch-1.3.0/vecmatch/man/csregion.Rd | 2 vecmatch-1.3.0/vecmatch/man/estimate_gps.Rd | 112 vecmatch-1.3.0/vecmatch/man/figures/unnamed-chunk-2-1.png |binary vecmatch-1.3.0/vecmatch/man/get_select_params.Rd |only vecmatch-1.3.0/vecmatch/man/make_opt_args.Rd | 12 vecmatch-1.3.0/vecmatch/man/match_gps.Rd | 40 vecmatch-1.3.0/vecmatch/man/mosaic.Rd | 16 vecmatch-1.3.0/vecmatch/man/optimize_gps.Rd | 47 vecmatch-1.3.0/vecmatch/man/raincloud.Rd | 34 vecmatch-1.3.0/vecmatch/man/run_selected_matching.Rd |only vecmatch-1.3.0/vecmatch/man/select_opt.Rd | 26 vecmatch-1.3.0/vecmatch/man/vecmatch-package.Rd | 18 vecmatch-1.3.0/vecmatch/tests/testthat/Rplots.pdf |only vecmatch-1.3.0/vecmatch/tests/testthat/test-balqual.R | 65 vecmatch-1.3.0/vecmatch/tests/testthat/test-chk-utils.R | 9 vecmatch-1.3.0/vecmatch/tests/testthat/test-csregion.R | 227 vecmatch-1.3.0/vecmatch/tests/testthat/test-estimate_gps.R | 474 + vecmatch-1.3.0/vecmatch/tests/testthat/test-estimate_gps_multinom.R | 1 vecmatch-1.3.0/vecmatch/tests/testthat/test-match_gps.R | 259 - vecmatch-1.3.0/vecmatch/tests/testthat/test-optimize_gps.R | 609 ++ vecmatch-1.3.0/vecmatch/tests/testthat/test-raincloud.R | 137 vecmatch-1.3.0/vecmatch/tests/testthat/test-utils.R | 32 vecmatch-1.3.0/vecmatch/vignettes/optimizing-matching.Rmd | 75 52 files changed, 6681 insertions(+), 2762 deletions(-)
More information about SpuriousMemory at CRAN
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Title: Bound on the Error of the First-Order Edgeworth Expansion
Description: Computes uniform bounds on the distance between
the cumulative distribution function of a standardized sum
of random variables and its first-order Edgeworth expansion,
following the article Derumigny, Girard, Guyonvarch (2023)
<doi:10.1007/s13171-023-00320-y>.
Author: Alexis Derumigny [aut, cre] ,
Lucas Girard [aut],
Yannick Guyonvarch [aut]
Maintainer: Alexis Derumigny <a.f.f.derumigny@tudelft.nl>
Diff between BoundEdgeworth versions 0.1.2.1 dated 2023-06-16 and 0.1.3 dated 2025-12-01
BoundEdgeworth-0.1.2.1/BoundEdgeworth/build/BoundEdgeworth.pdf |only BoundEdgeworth-0.1.2.1/BoundEdgeworth/build/stage23.rdb |only BoundEdgeworth-0.1.3/BoundEdgeworth/DESCRIPTION | 19 +- BoundEdgeworth-0.1.3/BoundEdgeworth/MD5 | 24 +-- BoundEdgeworth-0.1.3/BoundEdgeworth/NAMESPACE | 1 BoundEdgeworth-0.1.3/BoundEdgeworth/NEWS.md | 11 + BoundEdgeworth-0.1.3/BoundEdgeworth/R/Bound_BE.R | 34 +--- BoundEdgeworth-0.1.3/BoundEdgeworth/R/Bound_EE1.R | 76 ++++------ BoundEdgeworth-0.1.3/BoundEdgeworth/R/Gauss_test_power.R | 54 ++++--- BoundEdgeworth-0.1.3/BoundEdgeworth/README.md | 37 +++- BoundEdgeworth-0.1.3/BoundEdgeworth/build/partial.rdb |only BoundEdgeworth-0.1.3/BoundEdgeworth/inst |only BoundEdgeworth-0.1.3/BoundEdgeworth/man/Bound_BE.Rd | 61 +++----- BoundEdgeworth-0.1.3/BoundEdgeworth/man/Bound_EE1.Rd | 72 ++++----- BoundEdgeworth-0.1.3/BoundEdgeworth/man/Gauss_test_powerAnalysis.Rd | 52 ++++-- 15 files changed, 236 insertions(+), 205 deletions(-)
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More information about stoichUtilities at CRAN
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Title: Methods and Classes for the OMOP Common Data Model
Description: Provides definitions of core classes and methods used by analytic
pipelines that query the OMOP (Observational Medical Outcomes Partnership)
common data model.
Author: Marti Catala [aut, cre] ,
Edward Burn [aut] ,
Mike Du [ctb] ,
Yuchen Guo [ctb] ,
Adam Black [ctb] ,
Marta Alcalde-Herraiz [ctb]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between omopgenerics versions 1.3.3 dated 2025-11-11 and 1.3.4 dated 2025-12-01
omopgenerics-1.3.3/omopgenerics/man/print.conceptSetExpression.Rd |only omopgenerics-1.3.4/omopgenerics/DESCRIPTION | 6 omopgenerics-1.3.4/omopgenerics/MD5 | 34 omopgenerics-1.3.4/omopgenerics/NAMESPACE | 8 omopgenerics-1.3.4/omopgenerics/NEWS.md | 7 omopgenerics-1.3.4/omopgenerics/R/OMOPGenerics-package.R | 1 omopgenerics-1.3.4/omopgenerics/R/classCodelist.R | 23 omopgenerics-1.3.4/omopgenerics/R/classCodelistWithDetails.R | 105 + omopgenerics-1.3.4/omopgenerics/R/classConceptSetExpression.R | 122 + omopgenerics-1.3.4/omopgenerics/R/importConceptSetExpression.R | 4 omopgenerics-1.3.4/omopgenerics/R/logger.R | 11 omopgenerics-1.3.4/omopgenerics/R/sysdata.rda |binary omopgenerics-1.3.4/omopgenerics/inst/doc/logging.html | 101 - omopgenerics-1.3.4/omopgenerics/inst/doc/summarised_result.html | 900 +++++----- omopgenerics-1.3.4/omopgenerics/man/print.concept_set_expression.Rd |only omopgenerics-1.3.4/omopgenerics/tests/testthat/test-classCodelistWithDetails.R | 44 omopgenerics-1.3.4/omopgenerics/tests/testthat/test-classConceptSetExpression.R | 43 omopgenerics-1.3.4/omopgenerics/tests/testthat/test-cohortCodelist.R | 17 omopgenerics-1.3.4/omopgenerics/tests/testthat/test-methodSummary.R | 6 19 files changed, 851 insertions(+), 581 deletions(-)
Title: Preprocessing Tools for Clinical Trial Data
Description: A collection of functions to preprocess data and organize
them in a format amenable to use by chevron.
Author: Liming Li [aut] ,
Benoit Falquet [aut] ,
Xiaoli Duan [ctb],
Pawel Rucki [ctb],
Joe Zhu [cre] ,
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between dunlin versions 0.1.11 dated 2025-08-22 and 0.1.12 dated 2025-12-01
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ R/filter.R | 40 ++++++++++++++++++++++++++++++---------- R/reformat.R | 4 ++++ inst/WORDLIST | 1 - man/get_arg.Rd | 2 +- man/log_filter.Rd | 12 ++++++++---- man/reformat.Rd | 3 ++- tests/testthat/test-filter.R | 17 +++++++++++++++++ 10 files changed, 80 insertions(+), 31 deletions(-)
Title: Estimating (Time-Dependent) Drift Diffusion Models
Description: Fit and explore Drift Diffusion Models (DDMs),
a common tool in psychology for describing decision processes in simple
tasks. It can handle both time-independent and time-dependent DDMs. You
either choose prebuilt models or create your own, and the package takes
care of model predictions and parameter estimation. Model predictions
are derived via the numerical solutions provided by Richter, Ulrich, and
Janczyk (2023, <doi:10.1016/j.jmp.2023.102756>).
Author: Valentin Koob [cre, aut, cph],
Thomas Richter [aut, cph],
Markus Janczyk [aut]
Maintainer: Valentin Koob <v.koob@web.de>
Diff between dRiftDM versions 0.2.2 dated 2025-03-04 and 0.3.1 dated 2025-12-01
dRiftDM-0.2.2/dRiftDM/R/core_estimate_wrapper.R |only dRiftDM-0.2.2/dRiftDM/inst/drift_dm_fits |only dRiftDM-0.2.2/dRiftDM/man/calc_ic.Rd |only dRiftDM-0.2.2/dRiftDM/man/check_raw_data.Rd |only dRiftDM-0.2.2/dRiftDM/man/check_unique_special_boundary.Rd |only dRiftDM-0.2.2/dRiftDM/man/create_matrix_l_u.Rd |only dRiftDM-0.2.2/dRiftDM/man/get_example_fits_ids.Rd |only dRiftDM-0.2.2/dRiftDM/man/get_lower_upper_smart.Rd |only dRiftDM-0.2.2/dRiftDM/man/set_plot_limits.Rd |only dRiftDM-0.2.2/dRiftDM/src/cpp_kfe.cpp |only dRiftDM-0.2.2/dRiftDM/tests/testthat/_snaps/formatting_dm_fits_ids.md |only dRiftDM-0.2.2/dRiftDM/tests/testthat/_snaps/plotting/cafs-quantiles-delta.svg |only dRiftDM-0.2.2/dRiftDM/tests/testthat/fixtures/dmc.rds |only dRiftDM-0.2.2/dRiftDM/tests/testthat/fixtures/drift_dm_fits/test_case_saved |only dRiftDM-0.2.2/dRiftDM/tests/testthat/fixtures/dummy_models.R |only dRiftDM-0.2.2/dRiftDM/tests/testthat/fixtures/ratcliff.rds |only dRiftDM-0.2.2/dRiftDM/tests/testthat/fixtures/ssp.rds |only dRiftDM-0.2.2/dRiftDM/tests/testthat/test-formatting_dm_fits_ids.R |only dRiftDM-0.2.2/dRiftDM/vignettes/pictograms.pptx |only dRiftDM-0.3.1/dRiftDM/DESCRIPTION | 12 dRiftDM-0.3.1/dRiftDM/MD5 | 384 - 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dRiftDM-0.3.1/dRiftDM/vignettes/REFERENCES.bib | 25 dRiftDM-0.3.1/dRiftDM/vignettes/convert_dmc_parameters.Rmd | 62 dRiftDM-0.3.1/dRiftDM/vignettes/customize_ddms.Rmd | 154 dRiftDM-0.3.1/dRiftDM/vignettes/dRiftDM.Rmd | 516 + dRiftDM-0.3.1/dRiftDM/vignettes/model_recovery.Rmd |only dRiftDM-0.3.1/dRiftDM/vignettes/predictions_simple_ddm.Rmd |only 249 files changed, 22695 insertions(+), 7796 deletions(-)
More information about convergenceDFM at CRAN
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Title: Primary Event Censored Distributions
Description: Provides functions for working with primary
event censored distributions and 'Stan' implementations for use in Bayesian
modeling. Primary event censored distributions are useful for modeling
delayed reporting scenarios in epidemiology and other fields (Charniga et
al. (2024) <doi:10.48550/arXiv.2405.08841>). It also provides support for
arbitrary delay distributions, a range of common primary distributions, and
allows for truncation and secondary event censoring to be accounted for
(Park et al. (2024) <doi:10.1101/2024.01.12.24301247>). A subset of
common distributions also have analytical solutions implemented, allowing
for faster computation. In addition, it provides multiple methods for
fitting primary event censored distributions to data via optional
dependencies.
Author: Sam Abbott [aut, cre, cph] ,
Sam Brand [aut] ,
Adam Howes [ctb] ,
James Mba Azam [aut] ,
Carl Pearson [aut] ,
Sebastian Funk [aut] ,
Kelly Charniga [aut]
Maintainer: Sam Abbott <contact@samabbott.co.uk>
Diff between primarycensored versions 1.2.0 dated 2025-06-09 and 1.3.0 dated 2025-12-01
DESCRIPTION | 6 +- MD5 | 32 +++++------ NEWS.md | 21 +++++++ R/dprimarycensored.R | 4 + R/fitdistdoublecens.R | 42 +++++++++++++-- R/pcens_cdf.R | 16 ++--- inst/WORDLIST | 4 - inst/doc/why-it-works.Rmd | 6 +- inst/doc/why-it-works.html | 6 +- man/fitdistdoublecens.Rd | 48 +++++++++++++++-- man/pcd_cmdstan_model.Rd | 2 tests/spelling.R | 17 ++++-- tests/testthat/test-dprimarycensored.R | 41 +++++++++++++++ tests/testthat/test-fitdistdoublecens.R | 83 ++++++++++++++++++++++++++++++ tests/testthat/test-pcd_as_stan_data.R | 86 ++++++++++++++++++++++++++++++++ tests/testthat/test-pcens_cdf.R | 70 ++++++++++++++++++++++++-- vignettes/why-it-works.Rmd | 6 +- 17 files changed, 430 insertions(+), 60 deletions(-)
More information about primarycensored at CRAN
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Title: Building and Managing Local Databases from 'Google Earth Engine'
Description: Simplifies the creation, management, and updating of local databases using data extracted from 'Google Earth Engine' ('GEE'). It integrates with 'GEE' to store, aggregate, and process spatio-temporal data, leveraging 'SQLite' for efficient, serverless storage. The 'geeLite' package provides utilities for data transformation and supports real-time monitoring and analysis of geospatial features, making it suitable for researchers and practitioners in geospatial science. For details, see Kurbucz and Andrée (2025) "Building and Managing Local Databases from Google Earth Engine with the geeLite R Package" <https://hdl.handle.net/10986/43165>.
Author: Marcell T. Kurbucz [aut, cre],
Bo Pieter Johannes Andree [aut]
Maintainer: Marcell T. Kurbucz <m.kurbucz@ucl.ac.uk>
Diff between geeLite versions 1.0.3 dated 2025-11-22 and 1.0.4 dated 2025-12-01
geeLite-1.0.3/geeLite/R/run_geelite._halfgoogleimportR.R |only geeLite-1.0.4/geeLite/DESCRIPTION | 6 - geeLite-1.0.4/geeLite/MD5 | 67 +++++++-------- geeLite-1.0.4/geeLite/man/batch_drive_export.Rd | 23 ----- geeLite-1.0.4/geeLite/man/compare_lists.Rd | 9 -- geeLite-1.0.4/geeLite/man/compare_vectors.Rd | 9 -- geeLite-1.0.4/geeLite/man/compile_db.Rd | 11 -- geeLite-1.0.4/geeLite/man/db_connect.Rd | 5 - geeLite-1.0.4/geeLite/man/ee_as_tidyee.Rd | 13 -- geeLite-1.0.4/geeLite/man/extract_drive_stats.Rd | 22 ---- geeLite-1.0.4/geeLite/man/gee_message.Rd | 8 - geeLite-1.0.4/geeLite/man/gen_messages.Rd | 9 -- geeLite-1.0.4/geeLite/man/get_batch.Rd | 11 -- geeLite-1.0.4/geeLite/man/get_batches.Rd | 11 -- geeLite-1.0.4/geeLite/man/get_bins.Rd | 10 -- geeLite-1.0.4/geeLite/man/get_cases.Rd | 15 --- geeLite-1.0.4/geeLite/man/get_grid.Rd | 10 -- geeLite-1.0.4/geeLite/man/get_images.Rd | 17 --- geeLite-1.0.4/geeLite/man/get_reducers.Rd | 9 -- geeLite-1.0.4/geeLite/man/get_shapes.Rd | 11 -- geeLite-1.0.4/geeLite/man/get_task.Rd | 9 -- geeLite-1.0.4/geeLite/man/local_chunk_extract.Rd | 13 -- geeLite-1.0.4/geeLite/man/print_version.Rd | 7 - geeLite-1.0.4/geeLite/man/process_vector.Rd | 17 --- geeLite-1.0.4/geeLite/man/read_grid.Rd | 10 -- geeLite-1.0.4/geeLite/man/remove_tables.Rd | 8 - geeLite-1.0.4/geeLite/man/run_geelite.Rd | 23 ----- geeLite-1.0.4/geeLite/man/set_depend.Rd | 8 - geeLite-1.0.4/geeLite/man/set_dirs.Rd | 8 - geeLite-1.0.4/geeLite/man/set_progress_bar.Rd | 10 -- geeLite-1.0.4/geeLite/man/update_grid_stats.Rd | 11 -- geeLite-1.0.4/geeLite/man/write_grid.Rd | 7 - geeLite-1.0.4/geeLite/man/write_grid_stats.Rd | 7 - geeLite-1.0.4/geeLite/man/write_log_file.Rd | 8 - geeLite-1.0.4/geeLite/man/write_state_file.Rd | 8 - 35 files changed, 68 insertions(+), 362 deletions(-)
Title: Assessment of Regression Models Performance
Description: Utilities for computing measures to assess model quality,
which are not directly provided by R's 'base' or 'stats' packages.
These include e.g. measures like r-squared, intraclass correlation
coefficient (Nakagawa, Johnson & Schielzeth (2017)
<doi:10.1098/rsif.2017.0213>), root mean squared error or functions to
check models for overdispersion, singularity or zero-inflation and
more. Functions apply to a large variety of regression models,
including generalized linear models, mixed effects models and Bayesian
models. References: Lüdecke et al. (2021) <doi:10.21105/joss.03139>.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Remi Theriault [aut, ctb] ,
Vincent Arel-Bundock [ctb] ,
Martin J [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between performance versions 0.15.2 dated 2025-10-06 and 0.15.3 dated 2025-12-01
DESCRIPTION | 12 MD5 | 345 ++++----- NAMESPACE | 2 NEWS.md | 9 R/binned_residuals.R | 46 - R/check_autocorrelation.R | 37 - R/check_clusterstructure.R | 24 R/check_collinearity.R | 114 ++- R/check_convergence.R | 8 R/check_dag.R | 166 +++- R/check_distribution.R | 19 R/check_factorstructure.R | 7 R/check_group_variation.R | 48 - R/check_heteroscedasticity.R | 11 R/check_homogeneity.R | 38 - R/check_htest.R | 80 +- R/check_itemscale.R | 13 R/check_model.R | 258 ++++--- R/check_model_diagnostics.R | 94 +- R/check_multimodal.R | 17 R/check_normality.R | 45 - R/check_outliers.R | 760 +++++++++++++-------- R/check_overdispersion.R | 47 + R/check_predictions.R | 195 +++-- R/check_residuals.R | 26 R/check_singularity.R | 6 R/check_sphericity.R | 14 R/check_symmetry.R | 10 R/check_zeroinflation.R | 24 R/compare_performance.R | 101 ++ R/cronbachs_alpha.R | 4 R/display.R | 14 R/format.R | 7 R/get_gradients.R | 21 R/helpers.R | 7 R/icc.R | 113 ++- R/item_difficulty.R | 28 R/item_discrimination.R | 42 - R/item_omega.R | 52 - R/item_reliability.R | 13 R/model_performance.R | 30 R/model_performance.bayesian.R | 47 - R/model_performance.bife.R | 8 R/model_performance.ivreg.R | 20 R/model_performance.kmeans.R | 7 R/model_performance.lavaan.R | 43 - R/model_performance.lm.R | 59 + R/model_performance.mixed.R | 37 - R/model_performance.psych.R | 55 - R/model_performance.rma.R | 8 R/model_performance_default.R | 19 R/performance_accuracy.R | 98 +- R/performance_aicc.R | 60 + R/performance_cv.R | 127 ++- R/performance_logloss.R | 8 R/performance_mse.R | 4 R/performance_pcp.R | 66 + R/performance_reliability.R | 14 R/performance_rmse.R | 32 R/performance_roc.R | 21 R/performance_rse.R | 5 R/performance_score.R | 57 + R/print-methods.R | 77 +- R/print_md.R | 69 + R/r2.R | 84 +- R/r2_bayes.R | 40 - R/r2_ci.R | 27 R/r2_coxsnell.R | 29 R/r2_efron.R | 7 R/r2_ferarri.R | 1 R/r2_loo.R | 4 R/r2_mcfadden.R | 19 R/r2_mckelvey.R | 10 R/r2_mlm.R | 9 R/r2_nagelkerke.R | 24 R/r2_nakagawa.R | 70 + R/r2_xu.R | 4 R/residuals.R | 7 R/simulate_residuals.R | 17 R/test_bf.R | 15 R/test_likelihoodratio.R | 63 + R/test_performance.R | 76 +- R/test_vuong.R | 34 R/test_wald.R | 18 R/zzz-deprecated-check_heterogeneity_bias.R | 55 - build/partial.rdb |binary man/binned_residuals.Rd | 2 man/check_autocorrelation.Rd | 11 man/check_collinearity.Rd | 6 man/check_convergence.Rd | 2 man/check_dag.Rd | 2 man/check_distribution.Rd | 4 man/check_group_variation.Rd | 2 man/check_heteroscedasticity.Rd | 2 man/check_homogeneity.Rd | 2 man/check_itemscale.Rd | 2 man/check_model.Rd | 2 man/check_multimodal.Rd | 2 man/check_normality.Rd | 2 man/check_outliers.Rd | 2 man/check_overdispersion.Rd | 2 man/check_predictions.Rd | 4 man/check_residuals.Rd | 2 man/check_singularity.Rd | 2 man/check_sphericity.Rd | 2 man/check_zeroinflation.Rd | 2 man/compare_performance.Rd | 2 man/display.performance_model.Rd | 11 man/icc.Rd | 2 man/item_omega.Rd | 2 man/looic.Rd | 2 man/model_performance.fa.Rd | 2 man/model_performance.lavaan.Rd | 2 man/model_performance.merMod.Rd | 2 man/model_performance.rma.Rd | 2 man/model_performance.stanreg.Rd | 2 man/performance_reliability.Rd | 2 man/performance_rmse.Rd | 2 man/performance_score.Rd | 2 man/r2.Rd | 2 man/r2_bayes.Rd | 2 man/r2_ferrari.Rd | 2 man/r2_loo.Rd | 2 man/r2_nakagawa.Rd | 2 man/simulate_residuals.Rd | 2 tests/testthat/test-binned_residuals.R | 427 ++++++++++- tests/testthat/test-check_autocorrelation_simres.R |only tests/testthat/test-check_collinearity.R | 66 + tests/testthat/test-check_convergence.R | 6 tests/testthat/test-check_dag.R | 19 tests/testthat/test-check_distribution.R | 72 + tests/testthat/test-check_group_variation.R | 144 +++ tests/testthat/test-check_homogeneity.R | 19 tests/testthat/test-check_itemscale.R | 14 tests/testthat/test-check_model.R | 129 +++ tests/testthat/test-check_normality.R | 14 tests/testthat/test-check_outliers.R | 96 ++ tests/testthat/test-check_predictions.R | 341 ++++++++- tests/testthat/test-check_residuals.R | 14 tests/testthat/test-check_singularity.R | 3 tests/testthat/test-check_sphericity.R | 11 tests/testthat/test-compare_performance.R | 87 ++ tests/testthat/test-coxph.R | 7 tests/testthat/test-cronbachs_alpha.R | 12 tests/testthat/test-glmmPQL.R | 18 tests/testthat/test-icc.R | 31 tests/testthat/test-item_difficulty.R | 4 tests/testthat/test-item_discrimination.R | 31 tests/testthat/test-mclogit.R | 6 tests/testthat/test-model_performance-various.R | 13 tests/testthat/test-model_performance.bayesian.R | 45 - tests/testthat/test-model_performance.kmeans.R | 10 tests/testthat/test-model_performance.lavaan.R | 29 tests/testthat/test-model_performance.lm.R | 30 tests/testthat/test-model_performance.merMod.R | 30 tests/testthat/test-model_performance.psych.R | 12 tests/testthat/test-model_performance.rma.R | 62 + tests/testthat/test-nestedLogit.R | 10 tests/testthat/test-performance_reliability.R | 1 tests/testthat/test-performance_roc.R | 97 ++ tests/testthat/test-pkg-fixest.R | 6 tests/testthat/test-pkg-ivreg.R | 5 tests/testthat/test-r2.R | 6 tests/testthat/test-r2_bayes.R | 7 tests/testthat/test-r2_coxsnell.R | 6 tests/testthat/test-r2_ferrari.R | 14 tests/testthat/test-r2_kullback.R | 6 tests/testthat/test-r2_mcfadden.R | 3 tests/testthat/test-r2_nagelkerke.R | 19 tests/testthat/test-r2_nakagawa.R | 522 +++++++++++++- tests/testthat/test-rmse.R | 6 tests/testthat/test-roc.R | 6 tests/testthat/test-test_likelihoodratio.R | 15 tests/testthat/test-test_performance.R | 6 174 files changed, 5222 insertions(+), 1880 deletions(-)
Title: Business Process Analysis in R
Description: Comprehensive Business Process Analysis toolkit. Creates S3-class for event log objects, and related handler functions. Imports related packages for filtering event data, computation of descriptive statistics, handling of 'Petri Net' objects and visualization of process maps. See also packages 'edeaR','processmapR', 'eventdataR' and 'processmonitR'.
Author: Benoît Depaire [cre],
Gert Janssenswillen [aut],
Gerard van Hulzen [ctb],
Felix Mannhardt [ctb],
Niels Martin [ctb],
Greg Van Houdt [ctb],
Hasselt University [cph]
Maintainer: Benoît Depaire <benoit.depaire@uhasselt.be>
Diff between bupaR versions 0.5.5 dated 2025-07-07 and 1.0.0 dated 2025-12-01
bupaR-0.5.5/bupaR/R/filter_attributes.R |only bupaR-0.5.5/bupaR/man/filter_attributes.Rd |only bupaR-1.0.0/bupaR/DESCRIPTION | 24 +-- bupaR-1.0.0/bupaR/MD5 | 155 ++++++++++---------- bupaR-1.0.0/bupaR/NAMESPACE | 11 - bupaR-1.0.0/bupaR/R/act_collapse.R | 14 - bupaR-1.0.0/bupaR/R/act_recode.R | 11 - bupaR-1.0.0/bupaR/R/act_unite.R | 10 - bupaR-1.0.0/bupaR/R/activities.R | 15 - bupaR-1.0.0/bupaR/R/activity_instance_id.R | 2 bupaR-1.0.0/bupaR/R/activity_labels.R | 7 bupaR-1.0.0/bupaR/R/add_start_end_activity.R | 52 ++---- bupaR-1.0.0/bupaR/R/case_labels.R | 7 bupaR-1.0.0/bupaR/R/case_list.R | 9 - bupaR-1.0.0/bupaR/R/cases.r | 16 -- bupaR-1.0.0/bupaR/R/durations.R | 13 - bupaR-1.0.0/bupaR/R/first_n.R | 14 - bupaR-1.0.0/bupaR/R/group_by_trace.R |only bupaR-1.0.0/bupaR/R/last_n.R | 14 - bupaR-1.0.0/bupaR/R/lifecycle_labels.R | 10 - bupaR-1.0.0/bupaR/R/lifecycles.R | 18 -- bupaR-1.0.0/bupaR/R/mapping.R | 34 +--- bupaR-1.0.0/bupaR/R/n_activities.R | 16 -- bupaR-1.0.0/bupaR/R/n_activity_instances.R | 29 +-- bupaR-1.0.0/bupaR/R/n_cases.R | 11 - bupaR-1.0.0/bupaR/R/n_events.R | 25 --- bupaR-1.0.0/bupaR/R/n_resources.R | 10 - bupaR-1.0.0/bupaR/R/n_traces.R | 14 - bupaR-1.0.0/bupaR/R/resource_labels.R | 7 bupaR-1.0.0/bupaR/R/resources.R | 16 -- bupaR-1.0.0/bupaR/R/sample_n.R | 10 - bupaR-1.0.0/bupaR/R/select.R | 4 bupaR-1.0.0/bupaR/R/set_activity_id.R | 5 bupaR-1.0.0/bupaR/R/set_activity_instance_id.R | 5 bupaR-1.0.0/bupaR/R/set_case_id.R | 5 bupaR-1.0.0/bupaR/R/set_lifecycle_id.R | 5 bupaR-1.0.0/bupaR/R/set_resource_id.R | 5 bupaR-1.0.0/bupaR/R/set_timestamp.R | 5 bupaR-1.0.0/bupaR/R/trace_list.R | 39 ++--- bupaR-1.0.0/bupaR/R/traces.R | 15 - bupaR-1.0.0/bupaR/R/utils.R | 52 +++--- bupaR-1.0.0/bupaR/README.md | 2 bupaR-1.0.0/bupaR/man/act_collapse.Rd | 25 --- bupaR-1.0.0/bupaR/man/act_recode.Rd | 8 - bupaR-1.0.0/bupaR/man/act_unite.Rd | 8 - bupaR-1.0.0/bupaR/man/activities.Rd | 8 - bupaR-1.0.0/bupaR/man/activity_instance_id.Rd | 2 bupaR-1.0.0/bupaR/man/activity_labels.Rd | 6 bupaR-1.0.0/bupaR/man/add_end_activity.Rd | 18 +- bupaR-1.0.0/bupaR/man/case_labels.Rd | 6 bupaR-1.0.0/bupaR/man/case_list.Rd | 8 - bupaR-1.0.0/bupaR/man/cases.Rd | 10 - bupaR-1.0.0/bupaR/man/count.Rd | 88 +++++------ bupaR-1.0.0/bupaR/man/durations.Rd | 8 - bupaR-1.0.0/bupaR/man/first_n.Rd | 10 - bupaR-1.0.0/bupaR/man/group_by_trace.Rd |only bupaR-1.0.0/bupaR/man/last_n.Rd | 10 - bupaR-1.0.0/bupaR/man/lifecycle_labels.Rd | 8 - bupaR-1.0.0/bupaR/man/lifecycles.Rd | 12 - bupaR-1.0.0/bupaR/man/mapping.Rd | 8 - bupaR-1.0.0/bupaR/man/n_activities.Rd | 8 - bupaR-1.0.0/bupaR/man/n_activity_instances.Rd | 14 - bupaR-1.0.0/bupaR/man/n_cases.Rd | 8 - bupaR-1.0.0/bupaR/man/n_events.Rd | 12 - bupaR-1.0.0/bupaR/man/n_resources.Rd | 8 - bupaR-1.0.0/bupaR/man/n_traces.Rd | 8 - bupaR-1.0.0/bupaR/man/rename.Rd | 58 +++---- bupaR-1.0.0/bupaR/man/resource_labels.Rd | 6 bupaR-1.0.0/bupaR/man/resources.Rd | 12 - bupaR-1.0.0/bupaR/man/sample_n.Rd | 14 - bupaR-1.0.0/bupaR/man/select.Rd |only bupaR-1.0.0/bupaR/man/set_activity_id.Rd | 6 bupaR-1.0.0/bupaR/man/set_activity_instance_id.Rd | 6 bupaR-1.0.0/bupaR/man/set_case_id.Rd | 6 bupaR-1.0.0/bupaR/man/set_lifecycle_id.Rd | 6 bupaR-1.0.0/bupaR/man/set_resource_id.Rd | 6 bupaR-1.0.0/bupaR/man/set_timestamp.Rd | 6 bupaR-1.0.0/bupaR/man/trace_list.Rd | 10 - bupaR-1.0.0/bupaR/man/traces.Rd | 8 - bupaR-1.0.0/bupaR/tests/testthat/test_case_labels.R | 12 - bupaR-1.0.0/bupaR/tests/testthat/test_utils.R | 3 81 files changed, 465 insertions(+), 711 deletions(-)
Title: A Tool to Create HTML Tables
Description: A tool to create and style HTML tables with CSS. These can
be exported and used in any application that accepts HTML (e.g. 'shiny',
'rmarkdown', 'PowerPoint'). It also provides functions to create CSS files
(which also work with shiny).
Author: Theo Boutaris [aut, cre, cph],
Clemens Zauchner [aut],
Dana Jomar [aut]
Maintainer: Theo Boutaris <teoboot2007@hotmail.com>
Diff between tableHTML versions 2.1.2 dated 2023-04-17 and 2.1.3 dated 2025-12-01
DESCRIPTION | 7 MD5 | 18 R/render_tableHTML_family.R | 26 - inst/doc/conditional_column.html | 460 +++++++++++++++++------ inst/doc/examples.html | 383 ++++++++++++++----- inst/doc/make_css.html | 364 ++++++++++++++---- inst/doc/tableHTML.html | 777 +++++++++++++++++++++++++++++---------- inst/doc/themes.html | 541 ++++++++++++++++++--------- man/render_tableHTML.Rd | 4 man/tableHTML_output.Rd | 6 10 files changed, 1927 insertions(+), 659 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-12-09 0.3.2
2023-04-11 0.3.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-02-23 0.2.0
2022-12-21 0.1.0
Title: Customisable Ranking of Numerical and Categorical Data
Description: Provides a flexible alternative to the built-in rank() function called smartrank().
Optionally rank categorical variables by frequency (instead of in alphabetical order), and control whether ranking is based on descending/ascending order.
smartrank() is suitable for both numerical and categorical data.
Author: Sam El-Kamand [aut, cre, cph]
Maintainer: Sam El-Kamand <sam.elkamand@gmail.com>
Diff between rank versions 0.1.1 dated 2024-12-01 and 0.2.0 dated 2025-12-01
DESCRIPTION | 11 - MD5 | 27 +++- NAMESPACE | 3 NEWS.md | 20 +++ R/rank_by_priority.R |only R/rank_stratified.R |only R/reorder.R |only R/smartrank.R | 66 +++++++--- README.md | 119 ++++++++++++++---- inst/doc/smartrank.html | 23 +-- man/figures/logo.pdf |only man/figures/logo.png |only man/rank_by_priority.Rd |only man/rank_stratified.Rd |only man/reorder_by_priority.Rd |only man/smartrank.Rd | 21 +++ tests/testthat/test-rank_by_priority.R |only tests/testthat/test-rank_stratified.R |only tests/testthat/test-reorder.R |only tests/testthat/test-smartrank.R | 209 ++++++++++++++++++++++++++++++++- 20 files changed, 431 insertions(+), 68 deletions(-)
Title: Another Approach to Package Installation
Description: The goal of 'pak' is to make package installation faster and
more reliable. In particular, it performs all HTTP operations in
parallel, so metadata resolution and package downloads are fast.
Metadata and package files are cached on the local disk as well. 'pak'
has a dependency solver, so it finds version conflicts before
performing the installation. This version of 'pak' supports CRAN,
'Bioconductor' and 'GitHub' packages as well.
Author: Gabor Csardi [aut, cre],
Jim Hester [aut],
Posit Software, PBC [cph, fnd] ,
Winston Chang [ctb] ,
Ascent Digital Services [cph, fnd] ,
Hadley Wickham [ctb, cph] ,
Jeroen Ooms [ctb] ,
Maelle Salmon [ctb] ,
Duncan Temple Lang [ctb] ,
Lloyd Hilaiel [cph [...truncated...]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pak versions 0.9.0 dated 2025-05-27 and 0.9.1 dated 2025-12-01
DESCRIPTION | 6 - MD5 | 90 +++++++++---------- NEWS.md | 24 ++++- R/aaa-rstudio-detect.R | 16 ++- R/compat-vctrs.R | 2 R/confirmation.R | 4 R/deps-explain.R | 4 R/embed.R | 8 + R/errors.R | 101 ++++++++++++++++------ R/global-handler.R | 12 +- R/local.R | 12 +- R/lockfile.R | 6 - R/onload.R | 4 R/package.R | 22 +++- R/pak-cleanup.R | 16 ++- R/pak-sitrep.R | 8 + R/pak-update.R | 20 +++- R/private-lib.R | 8 + R/push-packages.R | 155 ++++++++++++++++++++++++++++------ R/rstudio-detect.R | 12 +- R/scan-deps.R | 5 - R/subprocess.R | 25 +++-- R/time-ago.R | 8 + R/unload.R | 8 + R/utils.R | 40 ++++++-- R/warn-loaded.R | 20 +++- man/chunks/install.Rmd | 10 -- man/install.Rd | 10 -- man/roxygen/meta.R | 1 src/install-embedded.R | 35 +++++-- src/library/keyring/DESCRIPTION | 7 - src/library/keyring/NEWS.md | 2 src/library/keyring/configure | 13 ++ src/library/keyring/src/raes.c | 3 src/library/pkgcache/DESCRIPTION | 7 - src/library/pkgcache/NEWS.md | 8 + src/library/pkgcache/R/compat-vctrs.R | 2 src/library/pkgcache/src/lib.c | 143 +++++++++++++++++++++++++++---- src/library/pkgdepends/DESCRIPTION | 6 - src/library/pkgdepends/R/type-deps.R | 10 +- tests/testthat/test-failure-output.R | 8 + tests/testthat/test-print.R | 4 tests/testthat/test-repo.R | 20 +++- tests/testthat/test-ui.R | 8 + tools/dynamic-help.R | 25 ++++- tools/pkgdown/assets/install.R | 18 ++- 46 files changed, 723 insertions(+), 253 deletions(-)
Title: Minimalist Async Evaluation Framework for R
Description: Designed for simplicity, a 'mirai' evaluates an R expression
asynchronously, locally or distributed over the network. Built on
'nanonext' and 'NNG' for modern networking and concurrency, scales
efficiently to millions of tasks over thousands of parallel processes.
Provides optimal scheduling over fast 'IPC', TCP, and TLS connections,
integrating with SSH or cluster managers. Implements event-driven
promises for reactive programming, and supports custom serialization
for cross-language data types.
Author: Charlie Gao [aut, cre] ,
Joe Cheng [ctb],
Posit Software, PBC [cph, fnd] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between mirai versions 2.5.2 dated 2025-11-05 and 2.5.3 dated 2025-12-01
mirai-2.5.2/mirai/inst/doc/v01-map.Rmd |only mirai-2.5.2/mirai/inst/doc/v01-map.html |only mirai-2.5.2/mirai/vignettes/v01-map.Rmd |only mirai-2.5.3/mirai/DESCRIPTION | 17 mirai-2.5.3/mirai/MD5 | 86 - mirai-2.5.3/mirai/NEWS.md | 8 mirai-2.5.3/mirai/R/daemon.R | 129 +- mirai-2.5.3/mirai/R/daemons.R | 155 ++- mirai-2.5.3/mirai/R/dispatcher.R | 125 +- mirai-2.5.3/mirai/R/launchers.R | 36 mirai-2.5.3/mirai/R/map.R | 100 +- mirai-2.5.3/mirai/R/mirai-package.R | 10 mirai-2.5.3/mirai/R/mirai.R | 83 - mirai-2.5.3/mirai/R/next.R | 4 mirai-2.5.3/mirai/R/otel.R | 150 +-- mirai-2.5.3/mirai/R/parallel.R | 25 mirai-2.5.3/mirai/R/promises.R | 11 mirai-2.5.3/mirai/build/vignette.rds |binary mirai-2.5.3/mirai/inst/doc/mirai.Rmd | 970 ++++++++------------- mirai-2.5.3/mirai/inst/doc/mirai.html | 993 +++++++++------------- mirai-2.5.3/mirai/inst/doc/v01-reference.Rmd |only mirai-2.5.3/mirai/inst/doc/v01-reference.html |only mirai-2.5.3/mirai/inst/doc/v02-promises.Rmd | 148 +-- mirai-2.5.3/mirai/inst/doc/v02-promises.html | 147 +-- mirai-2.5.3/mirai/inst/doc/v03-serialization.Rmd | 120 +- mirai-2.5.3/mirai/inst/doc/v03-serialization.html | 119 +- mirai-2.5.3/mirai/inst/doc/v04-parallel.Rmd | 45 mirai-2.5.3/mirai/inst/doc/v04-parallel.html | 46 - mirai-2.5.3/mirai/inst/doc/v05-opentelemetry.Rmd | 73 - mirai-2.5.3/mirai/inst/doc/v05-opentelemetry.html | 73 - mirai-2.5.3/mirai/inst/doc/v06-packages.Rmd | 76 - mirai-2.5.3/mirai/inst/doc/v06-packages.html | 74 - mirai-2.5.3/mirai/inst/doc/v07-questions.Rmd | 99 +- mirai-2.5.3/mirai/inst/doc/v07-questions.html | 96 +- mirai-2.5.3/mirai/man/cluster_config.Rd | 10 mirai-2.5.3/mirai/man/collect_mirai.Rd | 2 mirai-2.5.3/mirai/man/mirai-package.Rd | 8 mirai-2.5.3/mirai/man/remote_config.Rd | 2 mirai-2.5.3/mirai/tests/tests.R | 4 mirai-2.5.3/mirai/vignettes/mirai.Rmd | 970 ++++++++------------- mirai-2.5.3/mirai/vignettes/v01-reference.Rmd |only mirai-2.5.3/mirai/vignettes/v02-promises.Rmd | 148 +-- mirai-2.5.3/mirai/vignettes/v03-serialization.Rmd | 120 +- mirai-2.5.3/mirai/vignettes/v04-parallel.Rmd | 45 mirai-2.5.3/mirai/vignettes/v05-opentelemetry.Rmd | 73 - mirai-2.5.3/mirai/vignettes/v06-packages.Rmd | 76 - mirai-2.5.3/mirai/vignettes/v07-questions.Rmd | 99 +- 47 files changed, 2526 insertions(+), 3049 deletions(-)
Title: Algorithms and Tools for Tabular Statistics and Hierarchical
Computations
Description: Includes general data manipulation functions, algorithms for statistical disclosure control (Langsrud, 2024) <doi:10.1007/978-3-031-69651-0_6> and functions for hierarchical computations by sparse model matrices (Langsrud, 2023) <doi:10.32614/RJ-2023-088>.
Author: Oeyvind Langsrud [aut, cre] ,
Daniel Lupp [aut] ,
Bjoern-Helge Mevik [ctb],
Vidar Norstein Klungre [rev] ,
Statistics Norway [cph]
Maintainer: Oeyvind Langsrud <oyl@ssb.no>
Diff between SSBtools versions 1.8.4 dated 2025-10-31 and 1.8.6 dated 2025-12-01
DESCRIPTION | 10 +-- MD5 | 38 ++++++------ NAMESPACE | 2 NEWS.md | 18 ++++++ R/AutoHierarchies.R | 14 ++++ R/FindDimLists.R | 24 ++++++-- R/FormulaSums.R | 20 ++++++ R/HierarchiesAndFormula2ModelMatrix.R | 12 +++- R/ModelMatrix.R | 4 + R/convert_integer64.R |only R/diff_groups.R | 93 +++++++++++++++++++++++++++++-- R/max_contribution.R | 2 R/tables_by_formulas.R | 70 ++++++++++++++++++++++- man/AutoHierarchies.Rd | 6 +- man/FindDimLists.Rd | 4 + man/FormulaSums.Rd | 7 ++ man/HierarchiesAndFormula2ModelMatrix.Rd | 3 - man/ModelMatrix.Rd | 4 + man/convert_integer64.Rd |only man/diff_groups.Rd | 5 + man/tables_by_formulas.Rd | 8 ++ 21 files changed, 294 insertions(+), 50 deletions(-)
Title: Predict Regional Community Composition
Description: Predict regional community composition at a fine spatial
resolution using only sparse biological and environmental data. See
Simpkins et al. (2022) <doi:10.1111/ecog.06272> for full
details on the algorithm underlying the package.
Author: Craig Simpkins [aut, cre],
Sebastian Hanss [aut],
Maximilian Hesselbarth [aut],
Matthias Spangenberg [aut],
Jan Salecker [aut]
Maintainer: Craig Simpkins <simpkinscraig063@gmail.com>
Diff between spectre versions 1.0.2 dated 2021-07-17 and 1.0.5 dated 2025-12-01
DESCRIPTION | 17 - MD5 | 43 +- NAMESPACE | 1 NEWS.md | 15 R/RcppExports.R | 4 R/print.optim_sol.R |only R/run_optimization_min_conf.R | 25 + R/spectre-package.R | 2 README.md | 65 +--- build/vignette.rds |binary inst/CITATION |only inst/doc/getting_started_with_spectre.R | 14 inst/doc/getting_started_with_spectre.html | 463 ++++++++++++++++++++++------- inst/doc/minimal_example.R | 12 inst/doc/minimal_example.html | 419 ++++++++++++++++++++------ man/print.optim_sol.Rd |only man/run_optimization_min_conf.Rd | 14 man/spectre.Rd | 11 src/RcppExports.cpp | 18 - src/minconf.cpp | 21 + src/minconf.h | 3 src/optimizer.cpp | 6 src/optimizer.h | 1 tests/benchmark/catch.hpp | 3 24 files changed, 851 insertions(+), 306 deletions(-)
Title: Multiomics Data Integration
Description: Provides functions to do 'O2PLS-DA' analysis for multiple omics data integration.
The algorithm came from "O2-PLS, a two-block (X±Y) latent variable regression (LVR) method with an integral OSC filter"
which published by Johan Trygg and Svante Wold at 2003 <doi:10.1002/cem.775>.
'O2PLS' is a bidirectional multivariate regression method that aims to separate the covariance between
two data sets (it was recently extended to multiple data sets) (Löfstedt and Trygg, 2011 <doi:10.1002/cem.1388>; Löfstedt et al., 2012 <doi:10.1016/j.aca.2013.06.026>)
from the systematic sources of variance being specific for each data set separately.
Author: Kai Guo [aut, cre],
Junguk Hur [aut],
Eva Feldman [aut]
Maintainer: Kai Guo <guokai8@gmail.com>
This is a re-admission after prior archival of version 0.0.25 dated 2024-07-18
Diff between o2plsda versions 0.0.25 dated 2024-07-18 and 0.0.26 dated 2025-12-01
DESCRIPTION | 10 +- MD5 | 16 +-- NAMESPACE | 4 R/AllClasses.R | 3 build/vignette.rds |binary inst/doc/o2plsda.R | 2 inst/doc/o2plsda.Rmd | 6 - inst/doc/o2plsda.html | 217 +++++++++++++++++++++----------------------------- vignettes/o2plsda.Rmd | 6 - 9 files changed, 119 insertions(+), 145 deletions(-)
Title: Food Composition Information and Dietary Assessment
Description: Provides a tool set for food information and dietary assessment. It
uses food composition data from several reference databases, including: 'USDA' (United States),
'CIQUAL' (France), 'BEDCA' (Spain), 'CNF' (Canada) and 'STFCJ' (Japan). 'NutrienTrackeR' calculates
the intake levels for both macronutrient and micronutrients, and compares them with the recommended
dietary allowances (RDA). It includes a number of visualization tools, such as time series
plots of nutrient intake, and pie-charts showing the main foods contributing to the intake
level of a given nutrient. A shiny app exposing the main functionalities of the package is also
provided.
Author: Andrea Rodriguez-Martinez [aut],
Rafael Ayala [aut, cre] ,
Mark Balchunas [aut],
Pablo Hernandez [aut] ,
Lara Selles Vidal [aut]
Maintainer: Rafael Ayala <rafaelayalahernandez@gmail.com>
Diff between NutrienTrackeR versions 1.3.0 dated 2023-07-10 and 1.4.0 dated 2025-12-01
DESCRIPTION | 33 - MD5 | 16 NEWS | 3 build/vignette.rds |binary inst/doc/NutrienTrackeR.R | 2 inst/doc/NutrienTrackeR.Rmd | 15 inst/doc/NutrienTrackeR.html | 743 +++++++++++-------------------------------- tests/runTests.R | 15 vignettes/NutrienTrackeR.Rmd | 15 9 files changed, 242 insertions(+), 600 deletions(-)
More information about NutrienTrackeR at CRAN
Permanent link
Title: Construct Natural-Language Lists with Internationalization
Description: Construct language-aware lists. Make "and"-separated and
"or"-separated lists that automatically conform to the user's language
settings.
Author: Alexander Rossell Hayes [aut, cre, cph] ,
Unicode, Inc. [dtc] ,
Flavia Rossell Hayes [ill]
Maintainer: Alexander Rossell Hayes <alexander@rossellhayes.com>
Diff between and versions 0.1.6 dated 2025-02-25 and 0.1.7 dated 2025-12-01
DESCRIPTION | 12 MD5 | 512 +++++++++++++++++++------------------ NEWS.md | 12 README.md | 53 +-- data/and_languages.rda |binary inst/po/af/LC_MESSAGES/R-and.mo |binary inst/po/ak/LC_MESSAGES/R-and.mo |binary inst/po/am/LC_MESSAGES/R-and.mo |binary inst/po/ar/LC_MESSAGES/R-and.mo |binary inst/po/as/LC_MESSAGES/R-and.mo |binary inst/po/ast/LC_MESSAGES/R-and.mo |binary inst/po/az/LC_MESSAGES/R-and.mo |binary inst/po/be/LC_MESSAGES/R-and.mo |binary inst/po/bg/LC_MESSAGES/R-and.mo |binary inst/po/bgn/LC_MESSAGES/R-and.mo |binary inst/po/blo/LC_MESSAGES/R-and.mo |binary inst/po/bn/LC_MESSAGES/R-and.mo |binary inst/po/br/LC_MESSAGES/R-and.mo |binary inst/po/brx/LC_MESSAGES/R-and.mo |binary inst/po/bs/LC_MESSAGES/R-and.mo |binary inst/po/ca/LC_MESSAGES/R-and.mo |binary inst/po/ccp/LC_MESSAGES/R-and.mo |binary inst/po/ceb/LC_MESSAGES/R-and.mo |binary inst/po/chr/LC_MESSAGES/R-and.mo |binary inst/po/cs/LC_MESSAGES/R-and.mo |binary inst/po/csw/LC_MESSAGES/R-and.mo |binary 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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-19 3.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-04-01 0.1.0
Title: Parametrized Active Bindings
Description: Provides a simple interface for creating active bindings where the
bound function accepts additional arguments.
Author: Kirill Mueller [aut, cre] ,
RStudio [cph, fnd]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between bindr versions 0.1.2 dated 2024-11-21 and 0.1.3 dated 2025-12-01
DESCRIPTION | 13 +++++++------ MD5 | 6 +++--- NEWS.md | 7 +++++++ tests/testthat/test-error.R | 5 +++-- 4 files changed, 20 insertions(+), 11 deletions(-)
Title: Supporting Functions for Packages Maintained by 'YuLab-SMU'
Description: Miscellaneous functions commonly used by 'YuLab-SMU'.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between yulab.utils versions 0.2.1 dated 2025-08-19 and 0.2.2 dated 2025-12-01
DESCRIPTION | 8 MD5 | 47 +++-- NAMESPACE | 13 + NEWS.md | 17 + R/bib-knownledge.R | 440 +++++++++++++++++++++++++------------------------ R/cache.R | 106 ++++++----- R/error-utils.r |only R/file.R | 62 +++--- R/install_zip.R | 52 +++-- R/list.R | 30 +-- R/matrix-utils.R | 46 ++--- R/os.R | 53 +++-- R/pkg-utils.R | 192 ++++++++++----------- R/quiet.r |only R/regexpr.R | 54 +++--- R/scale.R | 16 - R/scihub-dl.R | 22 +- R/str-utils.R | 86 ++++----- R/yulab-msg.R | 20 +- man/check_directory.Rd |only man/check_file.Rd |only man/check_input.Rd |only man/check_packages.Rd |only man/check_range.Rd |only man/install_zip.Rd | 4 man/install_zip_gh.Rd | 9 - man/quiet.Rd |only man/yulab_abort.Rd |only man/yulab_inform.Rd |only man/yulab_warn.Rd |only 30 files changed, 687 insertions(+), 590 deletions(-)
Title: Modern Text Mining Framework for R
Description: Fast and memory-friendly tools for text vectorization, topic
modeling (LDA, LSA), word embeddings (GloVe), similarities. This package
provides a source-agnostic streaming API, which allows researchers to perform
analysis of collections of documents which are larger than available RAM. All
core functions are parallelized to benefit from multicore machines.
Author: Dmitriy Selivanov [aut, cre, cph],
Manuel Bickel [aut, cph] ,
Qing Wang [aut, cph]
Maintainer: Dmitriy Selivanov <selivanov.dmitriy@gmail.com>
Diff between text2vec versions 0.6.4 dated 2023-11-09 and 0.6.6 dated 2025-12-01
DESCRIPTION | 10 +++---- MD5 | 32 ++++++++++++------------- NEWS.md | 3 ++ R/distance_RWMD.R | 2 - R/model_Collocations.R | 2 - R/model_LDA.R | 49 ++++++++++++++++++--------------------- R/model_LSA.R | 2 - R/model_bns.R | 2 - R/model_tfidf.R | 2 - inst/doc/glove.html | 2 - inst/doc/text-vectorization.html | 20 +++++++-------- man/BNS.Rd | 2 - man/Collocations.Rd | 2 - man/LatentDirichletAllocation.Rd | 2 - man/LatentSemanticAnalysis.Rd | 2 - man/RelaxedWordMoversDistance.Rd | 2 - man/TfIdf.Rd | 2 - 17 files changed, 69 insertions(+), 69 deletions(-)
Title: Species Sensitivity Distributions
Description: Species sensitivity distributions are cumulative probability
distributions which are fitted to toxicity concentrations for
different species as described by Posthuma et al.(2001)
<isbn:9781566705783>. The ssdtools package uses Maximum Likelihood to
fit distributions such as the gamma, log-logistic, log-normal and
log-normal log-normal mixture. Multiple distributions can be averaged
using Akaike Information Criteria. Confidence intervals on hazard
concentrations and proportions are produced by bootstrapping.
Author: Joe Thorley [aut, cre] ,
Rebecca Fisher [aut],
David Fox [aut],
Carl Schwarz [aut],
Angeline Tillmanns [ctb],
Seb Dalgarno [ctb] ,
Kathleen McTavish [ctb],
Heather Thompson [ctb],
Doug Spry [ctb],
Rick van Dam [ctb],
Graham Batley [ctb],
Ali Azizishi [...truncated...]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between ssdtools versions 2.4.0 dated 2025-09-12 and 2.5.0 dated 2025-12-01
ssdtools-2.4.0/ssdtools/R/fit.R |only ssdtools-2.4.0/ssdtools/tests/testthat/_snaps/fit |only ssdtools-2.4.0/ssdtools/tests/testthat/_snaps/fit.md |only ssdtools-2.4.0/ssdtools/tests/testthat/test-fit.R |only ssdtools-2.5.0/ssdtools/DESCRIPTION | 20 - ssdtools-2.5.0/ssdtools/MD5 | 128 +++++----- ssdtools-2.5.0/ssdtools/NEWS.md | 11 ssdtools-2.5.0/ssdtools/R/ci-methods.R | 2 ssdtools-2.5.0/ssdtools/R/devtools-helpers.R | 1 ssdtools-2.5.0/ssdtools/R/fit-dists.R |only ssdtools-2.5.0/ssdtools/R/ggplot.R | 5 ssdtools-2.5.0/ssdtools/R/gof.R | 2 ssdtools-2.5.0/ssdtools/R/hcp.R | 1 ssdtools-2.5.0/ssdtools/R/params.R | 30 +- ssdtools-2.5.0/ssdtools/R/plot-data.R | 10 ssdtools-2.5.0/ssdtools/R/scales.R | 14 - ssdtools-2.5.0/ssdtools/R/ssd-plot.R | 27 +- ssdtools-2.5.0/ssdtools/R/sysdata.rda |binary ssdtools-2.5.0/ssdtools/build/vignette.rds |binary ssdtools-2.5.0/ssdtools/data/boron_pred.rda |binary ssdtools-2.5.0/ssdtools/data/dist_data.rda |binary ssdtools-2.5.0/ssdtools/inst/WORDLIST | 3 ssdtools-2.5.0/ssdtools/inst/doc/faqs.html | 6 ssdtools-2.5.0/ssdtools/inst/doc/ssdtools.Rmd | 2 ssdtools-2.5.0/ssdtools/inst/doc/ssdtools.html | 52 +--- ssdtools-2.5.0/ssdtools/man/boron_pred.Rd | 2 ssdtools-2.5.0/ssdtools/man/comma_signif.Rd | 2 ssdtools-2.5.0/ssdtools/man/geom_hcintersect.Rd | 4 ssdtools-2.5.0/ssdtools/man/geom_ssd.Rd | 11 ssdtools-2.5.0/ssdtools/man/geom_ssdpoint.Rd | 11 ssdtools-2.5.0/ssdtools/man/geom_ssdsegment.Rd | 11 ssdtools-2.5.0/ssdtools/man/geom_xribbon.Rd | 11 ssdtools-2.5.0/ssdtools/man/params.Rd | 31 +- ssdtools-2.5.0/ssdtools/man/predict.fitdists.Rd | 23 + ssdtools-2.5.0/ssdtools/man/ssd_fit_burrlioz.Rd | 2 ssdtools-2.5.0/ssdtools/man/ssd_fit_dists.Rd | 6 ssdtools-2.5.0/ssdtools/man/ssd_gof.Rd | 2 ssdtools-2.5.0/ssdtools/man/ssd_hc.Rd | 23 + ssdtools-2.5.0/ssdtools/man/ssd_hp.Rd | 23 + ssdtools-2.5.0/ssdtools/man/ssd_label_comma.Rd | 11 ssdtools-2.5.0/ssdtools/man/ssd_label_comma_hc.Rd | 12 ssdtools-2.5.0/ssdtools/man/ssd_plot.Rd | 5 ssdtools-2.5.0/ssdtools/man/ssd_plot_data.Rd | 5 ssdtools-2.5.0/ssdtools/man/stat_ssd.Rd | 9 ssdtools-2.5.0/ssdtools/tests/testthat/_snaps/autoplot/autoplot_decimalmark.png |only ssdtools-2.5.0/ssdtools/tests/testthat/_snaps/ci-methods.md | 5 ssdtools-2.5.0/ssdtools/tests/testthat/_snaps/fit-dists |only ssdtools-2.5.0/ssdtools/tests/testthat/_snaps/fit-dists.md |only ssdtools-2.5.0/ssdtools/tests/testthat/_snaps/ggplot/geom_hcintersect.png |binary ssdtools-2.5.0/ssdtools/tests/testthat/_snaps/ggplot/geom_hcintersect_aes.png |binary ssdtools-2.5.0/ssdtools/tests/testthat/_snaps/hc/hc_nonpara_small.csv |only ssdtools-2.5.0/ssdtools/tests/testthat/_snaps/plot-cdf/fits_decimalmark.png |only ssdtools-2.5.0/ssdtools/tests/testthat/_snaps/plot-data/decimal_mark_space.png |only ssdtools-2.5.0/ssdtools/tests/testthat/_snaps/ssd-plot/boron_decimark.png |only ssdtools-2.5.0/ssdtools/tests/testthat/_snaps/ssd-plot/boron_decimark2.png |only ssdtools-2.5.0/ssdtools/tests/testthat/_snaps/ssd-plot/boron_themeclassic.png |binary ssdtools-2.5.0/ssdtools/tests/testthat/_snaps/ssd-plot/no_ribbon.png |binary ssdtools-2.5.0/ssdtools/tests/testthat/test-autoplot.R | 9 ssdtools-2.5.0/ssdtools/tests/testthat/test-exposure.R | 2 ssdtools-2.5.0/ssdtools/tests/testthat/test-fit-dists.R |only ssdtools-2.5.0/ssdtools/tests/testthat/test-hc.R | 4 ssdtools-2.5.0/ssdtools/tests/testthat/test-hp.R | 7 ssdtools-2.5.0/ssdtools/tests/testthat/test-plot-cdf.R | 8 ssdtools-2.5.0/ssdtools/tests/testthat/test-plot-data.R | 6 ssdtools-2.5.0/ssdtools/tests/testthat/test-ssd-plot.R | 13 + ssdtools-2.5.0/ssdtools/vignettes/ssdtools.Rmd | 2 66 files changed, 348 insertions(+), 226 deletions(-)
Title: Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
Description: Comprehensive open-source toolbox for analysing Spatial Point Patterns. Focused mainly on two-dimensional point patterns, including multitype/marked points, in any spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, point patterns on a linear network, and patterns of other geometrical objects. Supports spatial covariate data such as pixel images.
Contains over 3000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference.
Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks.
Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlatio [...truncated...]
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat versions 3.4-1 dated 2025-09-28 and 3.5-0 dated 2025-12-01
DESCRIPTION | 16 +-- MD5 | 38 ++++----- NEWS | 8 + build/vignette.rds |binary inst/doc/NAobjects.pdf |binary inst/doc/bugfixes.Rnw | 20 ++++ inst/doc/bugfixes.pdf |binary inst/doc/datasets.pdf |binary inst/doc/fv.pdf |binary inst/doc/getstart.pdf |binary inst/doc/packagesizes.txt | 2 inst/doc/replicated.pdf |binary inst/doc/shapefiles.pdf |binary inst/doc/updates.Rnw | 190 ++++++++++++++++++++++++++++++++++++++++++--- inst/doc/updates.pdf |binary inst/info/packagesizes.txt | 2 man/macros/defns.Rd | 3 man/spatstat-package.Rd | 2 vignettes/bugfixes.Rnw | 20 ++++ vignettes/updates.Rnw | 190 ++++++++++++++++++++++++++++++++++++++++++--- 20 files changed, 437 insertions(+), 54 deletions(-)
Title: Exact Sequential Analysis for Poisson and Binomial Data
Description: Functions to calculate exact critical values, statistical power, expected time to signal, and required sample sizes for performing exact sequential analysis. All these calculations can be done for either Poisson or binomial data, for continuous or group sequential analyses, and for different types of rejection boundaries. In case of group sequential analyses, the group sizes do not have to be specified in advance and the alpha spending can be arbitrarily settled. For regression versions of the methods, Monte Carlo and asymptotic methods are used.
Author: Ivair Ramos Silva [aut, cre],
Martin Kulldorff [aut]
Maintainer: Ivair Ramos Silva <ivair@ufop.edu.br>
Diff between Sequential versions 4.5.1 dated 2025-10-29 and 4.5.2 dated 2025-12-01
DESCRIPTION | 8 +- MD5 | 10 +-- NAMESPACE | 3 - R/Analyze.Multinomial.R | 117 +++++++++++++++++++++++-------------------- R/AnalyzeSetUp.Multinomial.R | 2 man/Sequential-package.Rd | 7 +- 6 files changed, 82 insertions(+), 65 deletions(-)
Title: Running Operations for Vectors
Description: Lightweight library for rolling windows operations. Package enables
full control over the window length, window lag and a time indices. With a runner
one can apply any R function on a rolling windows. The package eases work with
equally and unequally spaced time series.
Author: Dawid Kaledkowski [aut, cre]
Maintainer: Dawid Kaledkowski <dawid.kaledkowski@gmail.com>
Diff between runner versions 0.4.4 dated 2024-03-03 and 0.4.5 dated 2025-12-01
DESCRIPTION | 13 MD5 | 48 - NEWS.md | 8 R/RcppExports.R | 55 - R/run.R | 138 ++-- build/vignette.rds |binary inst/doc/apply_any_r_function.R | 482 ++++++++-------- inst/doc/apply_any_r_function.html | 568 +++++++++---------- inst/doc/built-in_functions.html | 248 ++++---- inst/doc/runner_examples.R | 406 +++++++------- inst/doc/runner_examples.html | 494 ++++++++--------- man/fill_run.Rd | 6 man/max_run.Rd | 10 man/mean_run.Rd | 6 man/min_run.Rd | 2 man/runner.Rd | 8 man/streak_run.Rd | 2 man/sum_run.Rd | 4 man/which_run.Rd | 2 src/RcppExports.cpp | 235 ++++---- src/checks.h | 96 ++- src/fill_run.h | 81 +- src/utils.h | 322 +++++++---- src/vector_funs.h | 1063 ++++++++++++++++++++++--------------- src/window_funs.h | 9 25 files changed, 2356 insertions(+), 1950 deletions(-)
Title: Convert Decimals to Fractions
Description: Provides functions for converting decimals to a matrix of
numerators and denominators or a character vector of fractions.
Supports mixed or improper fractions, finding common denominators for
vectors of fractions, limiting denominators to powers of ten, and
limiting denominators to a maximum value. Also includes helper
functions for finding the least common multiple and greatest common
divisor for a vector of integers. Implemented using C++ for maximum
speed.
Author: Alexander Rossell Hayes [aut, cre, cph]
Maintainer: Alexander Rossell Hayes <alexander@rossellhayes.com>
Diff between fracture versions 0.2.1 dated 2022-05-21 and 0.2.2 dated 2025-12-01
DESCRIPTION | 36 ++++++++++++++++-------------------- MD5 | 8 ++++---- NEWS.md | 4 ++++ README.md | 23 +++++++++++------------ man/fracture-package.Rd | 1 - 5 files changed, 35 insertions(+), 37 deletions(-)
Title: Covariate Balancing Propensity Score
Description: Implements the covariate balancing propensity score (CBPS) proposed
by Imai and Ratkovic (2014) <DOI:10.1111/rssb.12027>. The propensity score is
estimated such that it maximizes the resulting covariate balance as well as the
prediction of treatment assignment. The method, therefore, avoids an iteration
between model fitting and balance checking. The package also implements optimal
CBPS from Fan et al. (in-press) <DOI:10.1080/07350015.2021.2002159>,
several extensions of the CBPS beyond the cross-sectional, binary treatment setting.
They include the CBPS for longitudinal settings so that it can be used in
conjunction with marginal structural models from Imai and Ratkovic (2015)
<DOI:10.1080/01621459.2014.956872>, treatments with three- and four-valued treatment
variables, continuous-valued treatments from Fong, Hazlett, and Imai (2018)
<DOI:10.1214/17-AOAS1101>, propensity score estimation with a large number of
covariates from Ning, Peng, and Imai (2020) <D [...truncated...]
Author: Christian Fong [aut, cre],
Marc Ratkovic [aut],
Kosuke Imai [aut],
Chad Hazlett [ctb],
Xiaolin Yang [ctb],
Sida Peng [ctb],
Inbeom Lee [ctb]
Maintainer: Christian Fong <cjfong@umich.edu>
Diff between CBPS versions 0.23 dated 2022-01-18 and 0.24 dated 2025-12-01
ChangeLog | 3 ++- DESCRIPTION | 14 +++++++------- MD5 | 8 ++++---- R/CBPSBinary.R | 5 +++-- R/CBPSContinuous.r | 2 +- 5 files changed, 17 insertions(+), 15 deletions(-)