Title: Client for World Banks's 'Indicators' and 'Poverty and
Inequality Platform (PIP)' APIs
Description: Download and search data from the 'World Bank Indicators
API', which provides access to nearly 16,000 time series indicators.
See
<https://datahelpdesk.worldbank.org/knowledgebase/articles/889392-about-the-indicators-api-documentation>
for further details about the API.
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
This is a re-admission after prior archival of version 0.7.0 dated 2025-11-10
Diff between worldbank versions 0.7.0 dated 2025-11-10 and 0.7.1 dated 2025-12-06
worldbank-0.7.0/worldbank/tests/testthat/setup.R |only worldbank-0.7.1/worldbank/DESCRIPTION | 8 +- worldbank-0.7.1/worldbank/MD5 | 31 ++++----- worldbank-0.7.1/worldbank/NEWS.md | 4 + worldbank-0.7.1/worldbank/R/indicators.R | 18 +++++ worldbank-0.7.1/worldbank/man/wb_country.Rd | 2 worldbank-0.7.1/worldbank/man/wb_data.Rd | 2 worldbank-0.7.1/worldbank/man/wb_income_level.Rd | 2 worldbank-0.7.1/worldbank/man/wb_indicator.Rd | 2 worldbank-0.7.1/worldbank/man/wb_language.Rd | 2 worldbank-0.7.1/worldbank/man/wb_lending_type.Rd | 2 worldbank-0.7.1/worldbank/man/wb_region.Rd | 2 worldbank-0.7.1/worldbank/man/wb_source.Rd | 2 worldbank-0.7.1/worldbank/man/wb_topic.Rd | 2 worldbank-0.7.1/worldbank/tests/testthat/test-fone.R | 4 - worldbank-0.7.1/worldbank/tests/testthat/test-indicators.R | 43 ++++++------- worldbank-0.7.1/worldbank/tests/testthat/test-pip.R | 2 17 files changed, 84 insertions(+), 44 deletions(-)
Title: Collecting 'TikTok' Data
Description: Getting 'TikTok' data (<https://www.tiktok.com/>) through the official
and unofficial APIs—in other words, you can track 'TikTok'.
Author: Johannes B. Gruber [aut, cre]
Maintainer: Johannes B. Gruber <JohannesB.Gruber@gmail.com>
This is a re-admission after prior archival of version 0.1.0 dated 2025-11-24
Diff between traktok versions 0.1.0 dated 2025-11-24 and 0.1.1 dated 2025-12-06
DESCRIPTION | 6 MD5 | 20 - NEWS.md | 2 R/utils.R | 3 README.md | 10 inst/WORDLIST | 5 inst/doc/research-api.Rmd | 2 inst/doc/research-api.html | 3 inst/doc/unofficial-api.Rmd | 492 +++++++++++++++++++++---------------------- vignettes/research-api.Rmd | 2 vignettes/unofficial-api.Rmd | 492 +++++++++++++++++++++---------------------- 11 files changed, 524 insertions(+), 513 deletions(-)
Title: Estimation of the Rasch Model for Multistage Tests
Description: Provides conditional maximum likelihood (CML) item parameter estimation of both sequential and cumulative deterministic multistage designs (Zwitser & Maris, 2015, <doi:10.1007/s11336-013-9369-6>) and probabilistic sequential and cumulative multistage designs (Steinfeld & Robitzsch, 2024, <doi:10.1007/s41237-024-00228-3>). Supports CML item parameter estimation of conventional linear designs and additional functions for the likelihood ratio test (Andersen, 1973, <doi:10.1007/BF02291180>) as well as functions for simulating various types of multistage designs.
Author: Jan Steinfeld [cre, aut] ,
Alexander Robitzsch [aut]
Maintainer: Jan Steinfeld <jan.d.steinfeld@gmail.com>
Diff between tmt versions 0.3.6-0 dated 2025-06-20 and 0.3.6-4 dated 2025-12-06
DESCRIPTION | 14 +- MD5 | 34 ++--- NEWS.md | 3 R/helper_functions.R | 3 R/raschmodel.mst.R | 40 ++++++ R/sim.rm.R | 11 + R/tmt_gmc.R | 6 + R/tmt_mstdesign.R | 115 ++++++++++++++++++- R/tmt_msttemplate.R | 38 +++++- R/tmt_sim.R | 161 +++++++++++++++++++++++++-- README.md | 22 ++- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS | 8 + inst/doc/introduction_to_tmt.html | 8 - src/esf_mst_sum_vector.cpp | 201 ++++++++++++++++++++++++++++++++-- src/esf_mst_sum_vector_s2.h | 151 ++++++++++++++++++++++++- tests/testthat/test-helperfunctions.R | 26 ++-- 18 files changed, 748 insertions(+), 93 deletions(-)
Title: Tidy Methods for Bayesian Treatment Effect Models
Description: Functions for extracting tidy data from Bayesian treatment effect models, in particular BART, but extensions are possible. Functionality includes extracting tidy posterior summaries as in 'tidybayes' <https://github.com/mjskay/tidybayes>, estimating (average) treatment effects, common support calculations, and plotting useful summaries of these.
Author: Joshua J Bon [aut, cre]
Maintainer: Joshua J Bon <joshuajbon@gmail.com>
Diff between tidytreatment versions 0.3.1 dated 2025-01-10 and 0.3.2 dated 2025-12-06
tidytreatment-0.3.1/tidytreatment/man/fitted_draws.bartMachine.Rd |only tidytreatment-0.3.1/tidytreatment/man/fitted_draws.lbart.Rd |only tidytreatment-0.3.1/tidytreatment/man/fitted_draws.mbart.Rd |only tidytreatment-0.3.1/tidytreatment/man/fitted_draws.mbart2.Rd |only tidytreatment-0.3.1/tidytreatment/man/fitted_draws.pbart.Rd |only tidytreatment-0.3.1/tidytreatment/man/fitted_draws.wbart.Rd |only tidytreatment-0.3.1/tidytreatment/man/fitted_draws_BART.Rd |only tidytreatment-0.3.2/tidytreatment/DESCRIPTION | 15 - tidytreatment-0.3.2/tidytreatment/MD5 | 90 +++--- tidytreatment-0.3.2/tidytreatment/NAMESPACE | 16 - tidytreatment-0.3.2/tidytreatment/NEWS.md | 5 tidytreatment-0.3.2/tidytreatment/R/average-treatment-effects-posterior.R | 6 tidytreatment-0.3.2/tidytreatment/R/common-support.R | 12 tidytreatment-0.3.2/tidytreatment/R/helper.R | 2 tidytreatment-0.3.2/tidytreatment/R/tidy-posterior-BART.R | 141 +++++++--- tidytreatment-0.3.2/tidytreatment/R/tidy-posterior-bartMachine.R | 26 - tidytreatment-0.3.2/tidytreatment/R/tidy-posterior-stan4bart.R | 40 -- tidytreatment-0.3.2/tidytreatment/R/tidytreatment-package.R | 2 tidytreatment-0.3.2/tidytreatment/R/treatment-effects-bartCause.R | 2 tidytreatment-0.3.2/tidytreatment/R/treatment-effects-posterior.R | 11 tidytreatment-0.3.2/tidytreatment/R/tree-extract-BART.R | 2 tidytreatment-0.3.2/tidytreatment/build/vignette.rds |binary tidytreatment-0.3.2/tidytreatment/inst/doc/use-tidytreatment-BART-binary-outcome.R |only tidytreatment-0.3.2/tidytreatment/inst/doc/use-tidytreatment-BART-binary-outcome.Rmd |only tidytreatment-0.3.2/tidytreatment/inst/doc/use-tidytreatment-BART-binary-outcome.html |only tidytreatment-0.3.2/tidytreatment/inst/doc/use-tidytreatment-BART.R | 10 tidytreatment-0.3.2/tidytreatment/inst/doc/use-tidytreatment-BART.Rmd | 10 tidytreatment-0.3.2/tidytreatment/inst/doc/use-tidytreatment-BART.html | 85 +++--- tidytreatment-0.3.2/tidytreatment/inst/doc/use-tidytreatment-bartCause.R | 4 tidytreatment-0.3.2/tidytreatment/inst/doc/use-tidytreatment-bartCause.Rmd | 4 tidytreatment-0.3.2/tidytreatment/inst/doc/use-tidytreatment-bartCause.html | 75 ++--- tidytreatment-0.3.2/tidytreatment/man/avg_treatment_effects.Rd | 2 tidytreatment-0.3.2/tidytreatment/man/epred_draws.bartMachine.Rd |only tidytreatment-0.3.2/tidytreatment/man/epred_draws.lbart.Rd |only tidytreatment-0.3.2/tidytreatment/man/epred_draws.mbart.Rd |only tidytreatment-0.3.2/tidytreatment/man/epred_draws.mbart2.Rd |only tidytreatment-0.3.2/tidytreatment/man/epred_draws.pbart.Rd |only tidytreatment-0.3.2/tidytreatment/man/epred_draws.stan4bartFit.Rd | 4 tidytreatment-0.3.2/tidytreatment/man/epred_draws.wbart.Rd |only tidytreatment-0.3.2/tidytreatment/man/epred_draws_BART.Rd |only tidytreatment-0.3.2/tidytreatment/man/has_common_support.Rd | 2 tidytreatment-0.3.2/tidytreatment/man/linpred_draws.stan4bartFit.Rd | 6 tidytreatment-0.3.2/tidytreatment/man/predicted_draws.lbart.Rd |only tidytreatment-0.3.2/tidytreatment/man/predicted_draws.pbart.Rd |only tidytreatment-0.3.2/tidytreatment/man/predicted_draws.stan4bartFit.Rd | 10 tidytreatment-0.3.2/tidytreatment/man/predicted_draws_BART.Rd | 6 tidytreatment-0.3.2/tidytreatment/man/tidy_ate.Rd | 2 tidytreatment-0.3.2/tidytreatment/man/tidy_att.Rd | 2 tidytreatment-0.3.2/tidytreatment/man/tidytreatment.Rd | 4 tidytreatment-0.3.2/tidytreatment/man/treatment_effects.Rd | 2 tidytreatment-0.3.2/tidytreatment/man/treatment_effects.bartcFit.Rd | 2 tidytreatment-0.3.2/tidytreatment/man/treatment_effects.default.Rd | 2 tidytreatment-0.3.2/tidytreatment/tests/testthat/test-fitted.R | 2 tidytreatment-0.3.2/tidytreatment/vignettes/use-tidytreatment-BART-binary-outcome.Rmd |only tidytreatment-0.3.2/tidytreatment/vignettes/use-tidytreatment-BART.Rmd | 10 tidytreatment-0.3.2/tidytreatment/vignettes/use-tidytreatment-bartCause.Rmd | 4 56 files changed, 362 insertions(+), 256 deletions(-)
Title: Robust Exponential Factor Analysis
Description: A robust alternative to the traditional principal component estimator is proposed within the framework of factor models, known as Robust Exponential Factor Analysis, specifically designed for the modeling of high-dimensional datasets with heavy-tailed distributions. The algorithm estimates the latent factors and the loading by minimizing the exponential squared loss function. To determine the appropriate number of factors, we propose a modified rank minimization technique, which has been shown to significantly enhance finite-sample performance. For more detail of Robust Exponential Factor Analysis, please refer to Hu et al. (2026) <doi:10.1016/j.jmva.2025.105567>.
Author: Jiaqi Hu [cre, aut],
Xueqin Wang [aut]
Maintainer: Jiaqi Hu <hujiaqi@mail.ustc.edu.cn>
Diff between REFA versions 0.1.0 dated 2023-11-19 and 0.2.0 dated 2025-12-06
DESCRIPTION | 16 +++---- MD5 | 28 ++++++------- NAMESPACE | 29 +++++++------- NEWS.md | 2 R/FA.R | 37 ++++++++++++++++++ R/REFA.R | 54 ++++++++++++++++++++++++++ R/auxiliary.R | 67 ++++++++++++++++++++++++++++++--- R/gendata.R | 115 ++++++++++++++++++++++++++++++++++++++------------------- man/ECC.Rd | 28 ++++++++----- man/FA.Rd | 35 +++++++++-------- man/REFA.Rd | 47 +++++++++++++---------- man/REFA_FN.Rd | 50 ++++++++++++++---------- man/TR.Rd | 19 ++++++--- man/est_num.Rd | 25 +++++++----- man/gendata.Rd | 41 +++++++++++--------- 15 files changed, 417 insertions(+), 176 deletions(-)
Title: Bindings for 'Open Source Routing Machine'
Description: Install and control 'Open Source Routing Machine' ('OSRM')
backend executables to prepare routing data and run/stop a local
'OSRM' server. For computations with the running server use the 'osrm'
R package (<https://cran.r-project.org/package=osrm>).
Author: Egor Kotov [aut, cre, cph]
Maintainer: Egor Kotov <kotov.egor@gmail.com>
Diff between osrm.backend versions 0.1.0 dated 2025-12-03 and 0.1.1 dated 2025-12-06
osrm.backend-0.1.0/osrm.backend/inst/doc/osrm-backend.qmd |only osrm.backend-0.1.0/osrm.backend/man/print.osrm_job.Rd |only osrm.backend-0.1.0/osrm.backend/vignettes/osrm-backend.qmd |only osrm.backend-0.1.1/osrm.backend/DESCRIPTION | 10 osrm.backend-0.1.1/osrm.backend/MD5 | 26 osrm.backend-0.1.1/osrm.backend/NEWS.md | 4 osrm.backend-0.1.1/osrm.backend/R/utils.R | 29 osrm.backend-0.1.1/osrm.backend/README.md | 11 osrm.backend-0.1.1/osrm.backend/build/vignette.rds |binary osrm.backend-0.1.1/osrm.backend/inst/CITATION | 5 osrm.backend-0.1.1/osrm.backend/inst/doc/osrm-backend.R | 64 - osrm.backend-0.1.1/osrm.backend/inst/doc/osrm-backend.Rmd |only osrm.backend-0.1.1/osrm.backend/inst/doc/osrm-backend.html | 443 ++++++++-- osrm.backend-0.1.1/osrm.backend/tests/testthat/setup-osrm.R | 61 - osrm.backend-0.1.1/osrm.backend/tests/testthat/teardown.R |only osrm.backend-0.1.1/osrm.backend/tests/testthat/test-osrm_server.R | 10 osrm.backend-0.1.1/osrm.backend/vignettes/osrm-backend.Rmd |only 17 files changed, 472 insertions(+), 191 deletions(-)
Title: Model Selection and Tuning Utilities
Description: Provides a lightweight framework for model selection
and hyperparameter tuning in R. The package offers intuitive tools for
grid search, cross-validation, and combined grid search with cross-validation
that work seamlessly with virtually any modeling package. Designed for
flexibility and ease of use, it standardizes tuning workflows while
remaining fully compatible with a wide range of model interfaces and
estimation functions.
Author: Daniel Molitor [aut, cre]
Maintainer: Daniel Molitor <molitdj97@gmail.com>
Diff between modeltuning versions 0.1.2 dated 2025-10-28 and 0.1.3 dated 2025-12-06
DESCRIPTION | 11 ++++++----- MD5 | 13 +++++++------ NEWS.md |only README.md | 20 +++++++++++++------- inst/doc/basic-usage.html | 18 +++++++++--------- inst/doc/data-masking.html | 36 +++++++++++++++++++----------------- inst/doc/scaling-with-aws.html | 16 ++++++++-------- man/modeltuning-package.Rd | 1 + 8 files changed, 63 insertions(+), 52 deletions(-)
Title: Bootstrap Analyses of Sampling Uncertainty in Goodness-of-Fit
Statistics
Description: Uses jackknife and bootstrap methods to quantify the sampling uncertainty in goodness-of-fit statistics. Full details are in Clark et al. (2021), "The abuse of popular performance metrics in hydrologic modeling", Water Resources Research, <doi:10.1029/2020WR029001>.
Author: Martyn Clark [aut],
Kevin Shook [aut, trl, cre]
Maintainer: Kevin Shook <kshook@kshook.ca>
Diff between gumboot versions 1.0.1 dated 2023-10-18 and 1.0.2 dated 2025-12-06
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- R/gumboot-package.R | 3 ++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/using_gumboot.R | 10 +++++----- inst/doc/using_gumboot.html | 21 +++++++++++---------- man/gumboot-package.Rd | 2 ++ 8 files changed, 33 insertions(+), 29 deletions(-)
Title: Group Sequential Design
Description: Derives group sequential clinical trial designs and describes
their properties. Particular focus on time-to-event, binary, and
continuous outcomes. Largely based on methods described in
Jennison, Christopher and Turnbull, Bruce W., 2000,
"Group Sequential Methods with Applications to Clinical Trials"
ISBN: 0-8493-0316-8.
Author: Keaven Anderson [aut, cre],
Merck & Co., Inc., Rahway, NJ, USA and its affiliates [cph]
Maintainer: Keaven Anderson <keaven_anderson@merck.com>
Diff between gsDesign versions 3.7.0 dated 2025-08-25 and 3.8.0 dated 2025-12-06
DESCRIPTION | 8 MD5 | 102 NEWS.md | 43 R/gsMethods.R | 9 R/gsqplot.R | 6 R/nNormal.R | 4 R/sfXG.R | 2 inst/doc/ConditionalErrorSpending.html | 351 +- inst/doc/PoissonMixtureModel.html | 693 ++--- inst/doc/VaccineEfficacy.html | 468 +-- inst/doc/binomialSPRTExample.html | 222 - inst/doc/binomialTwoSample.html | 1488 +++++------- inst/doc/gsSurvBasicExamples.html | 355 +- inst/doc/nNormal.html | 2 man/gsDesign-package.Rd | 2 man/nNormal.Rd | 4 tests/testthat/_snaps |only tests/testthat/test-independent-test-plot.gsBinomialExact.R | 10 tests/testthat/test-independent-test-plot.gsDesign.R | 18 tests/testthat/test-independent-test-plot.gsProbability.R | 10 tests/testthat/test-independent-test-sfXG.R |only tests/testthat/test-independent-test-toBinomialExact.R |only tests/testthat/test-independent-test-xtable.R |only 23 files changed, 1933 insertions(+), 1864 deletions(-)
Title: Group Factor Analysis
Description: Implements statistical methods for group factor analysis, focusing on estimating the number of global and local factors and extracting them. Several algorithms are implemented, including Canonical Correlation-based Estimation by Choi et al. (2021) <doi:10.1016/j.jeconom.2021.09.008>, Generalised Canonical Correlation Estimation by Lin and Shin (2023) <doi:10.2139/ssrn.4295429>, Circularly Projected Estimation by Chen (2022) <doi:10.1080/07350015.2022.2051520>, and the Aggregated Projection Method by Hu et al. (2025) <doi:10.1080/01621459.2025.2491154>.
Author: Jiaqi Hu [cre, aut],
Ting Li [aut],
Xueqin Wang [aut]
Maintainer: Jiaqi Hu <hujiaqi@mail.ustc.edu.cn>
Diff between GrFA versions 0.2.1 dated 2024-12-22 and 0.2.2 dated 2025-12-06
DESCRIPTION | 30 ++--- MD5 | 41 ++++---- NAMESPACE | 26 ++--- NEWS.md |only R/APM.R | 234 +++++++++++++++++++++++++++++----------------- R/CCA.R | 233 +++++++++++++++++++++++++++++----------------- R/CPE.R | 177 +++++++++++++++++++++++----------- R/FA.R | 208 ++++++++++++++++++++++++++--------------- R/GCC.R | 199 ++++++++++++++++++++++++--------------- R/auxiliary.R | 129 +++++++++++++++++++------ R/data.R |only R/gendata.R | 263 +++++++++++++++++++++++++++++++--------------------- man/APM.Rd | 78 ++++++++++----- man/CCA.Rd | 71 ++++++++------ man/CP.Rd | 57 ++++++----- man/FA.Rd | 31 +++--- man/GCC.Rd | 55 ++++++---- man/TraceRatio.Rd | 26 +++-- man/UShouseprice.Rd | 91 +++++++++-------- man/est_num.Rd | 32 ++++-- man/gendata.Rd | 96 +++++++++++------- man/print.GFA.Rd | 18 +-- man/print.GFD.Rd |only 23 files changed, 1322 insertions(+), 773 deletions(-)
Title: Factor Analysis for All
Description: Provides a comprehensive Shiny-based graphical user interface for conducting
a wide range of factor analysis procedures. 'FAfA' (Factor Analysis for All)
guides users through data uploading, assumption checking (descriptives,
collinearity, multivariate normality, outliers), data wrangling (variable
exclusion, data splitting), factor retention analysis (e.g., Parallel Analysis,
Hull method, EGA), Exploratory Factor Analysis (EFA) with various rotation
and extraction methods, Confirmatory Factor Analysis (CFA) for model testing,
Reliability Analysis (e.g., Cronbach's Alpha, McDonald's Omega), Measurement
Invariance testing across groups, and item weighting techniques. The application
leverages established R packages such as 'lavaan' and 'psych' to perform
these analyses, offering an accessible platform for researchers and students.
Results are presented in user-friendly tables and plots, with options for
downloading outputs.
Author: Abdullah Faruk KILIC [aut, cre]
Maintainer: Abdullah Faruk KILIC <afarukkilic@trakya.edu.tr>
Diff between FAfA versions 0.3 dated 2025-05-23 and 0.4 dated 2025-12-06
DESCRIPTION | 17 ++- MD5 | 8 - R/mod_about_server.r | 224 +++++++++++++++++++++++++------------------------- R/mod_cfa_server.r | 43 +++++++-- inst/golem-config.yml | 2 5 files changed, 161 insertions(+), 133 deletions(-)
Title: A Method to Identify Single CpG Sites for Classification and
Deconvolution
Description: DNA methylation signatures are usually based on multivariate
approaches that require hundreds of sites for predictions. 'CimpleG'
is a method for the detection of small CpG methylation signatures used
for cell-type classification and deconvolution. 'CimpleG' is time
efficient and performs as well as top performing methods for cell-type
classification of blood cells and other somatic cells, while basing
its prediction on a single DNA methylation site per cell type (but
users can also select more sites if they so wish). Users can train
cell type classifiers ('CimpleG' based, and others) and directly apply
these in a deconvolution of cell mixes context. Altogether, 'CimpleG'
provides a complete computational framework for the delineation of
DNAm signatures and cellular deconvolution. For more details see Maié
et al. (2023) <doi:10.1186/s13059-023-03000-0>.
Author: Tiago F.V. Maie [aut, cre]
Maintainer: Tiago F.V. Maie <tiagomaie@hotmail.com>
Diff between CimpleG versions 1.0.0 dated 2025-12-03 and 1.0.1 dated 2025-12-06
DESCRIPTION | 18 ++-- MD5 | 10 +- README.md | 130 +++++++++++++++++++++------------ inst/doc/generate-signatures.html | 12 +-- inst/doc/save_load_objects.html | 4 - tests/testthat/test3-CimpleG-xgboost.R | 10 +- 6 files changed, 112 insertions(+), 72 deletions(-)
Title: Outlier Detection and Influence Diagnostics for Meta-Analysis
Description: Computational tools for outlier detection and influence diagnostics in meta-analysis (Noma et al. (2025) <doi:10.1101/2025.09.18.25336125>). Bootstrap distributions of influence statistics are computed, and explicit thresholds for identifying outliers are provided. These methods can also be applied to the analysis of influential centers or regions in multicenter or multiregional clinical trials (Aoki, Noma and Gosho (2021) <doi:10.1080/24709360.2021.1921944>, Nakamura and Noma (2021) <doi:10.5691/jjb.41.117>).
Author: Hisashi Noma [aut, cre],
Kazushi Maruo [aut],
Masahiko Gosho [aut]
Maintainer: Hisashi Noma <noma@ism.ac.jp>
Diff between boutliers versions 2.1-2 dated 2025-11-25 and 2.1-3 dated 2025-12-06
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NAMESPACE | 3 +++ NEWS.md | 4 ++++ 4 files changed, 15 insertions(+), 8 deletions(-)
Title: Tools for Preprocessing Visual World Data
Description: Gaze data from the Visual World Paradigm requires significant
preprocessing prior to plotting and analyzing the data. This package
provides functions for preparing visual world eye-tracking data for
statistical analysis and plotting. It can prepare data for linear
analyses (e.g., ANOVA, Gaussian-family LMER, Gaussian-family GAMM) as
well as logistic analyses (e.g., binomial-family LMER and binomial-family GAMM).
Additionally, it contains various plotting functions for creating grand average and
conditional average plots. See the vignette for samples of the functionality.
Currently, the functions in this package are designed for handling data
collected with SR Research Eyelink eye trackers using Sample Reports created
in SR Research Data Viewer. While we would like to add functionality
for data collected with other systems in the future, the current package is
considered to be feature-complete; further updates will mainly entail maintenance
and the addition of minor functionality.
Author: Vincent Porretta [aut, cre],
Aki-Juhani Kyroelaeinen [aut],
Jacolien van Rij [ctb],
Juhani Jaervikivi [ctb]
Maintainer: Vincent Porretta <vincentporretta@gmail.com>
Diff between VWPre versions 1.2.4 dated 2020-11-29 and 1.2.5 dated 2025-12-06
DESCRIPTION | 12 MD5 | 48 - R/VWPre.R | 3 R/calculations.R | 2 R/formatting.R | 27 R/plotting.R | 2 build/vignette.rds |binary inst/NEWS | 879 ++++++++++++++++---------------- inst/doc/VWPre_Basic_Preprocessing.R | 100 +-- inst/doc/VWPre_Basic_Preprocessing.Rmd | 6 inst/doc/VWPre_Basic_Preprocessing.html | 611 ++++++++++++++++------ inst/doc/VWPre_Interest_Areas.R | 34 - inst/doc/VWPre_Interest_Areas.html | 270 ++++++--- inst/doc/VWPre_Message_Alignment.R | 22 inst/doc/VWPre_Message_Alignment.Rmd | 272 ++++----- inst/doc/VWPre_Message_Alignment.html | 273 +++++++-- inst/doc/VWPre_Plotting.R | 64 +- inst/doc/VWPre_Plotting.Rmd | 7 inst/doc/VWPre_Plotting.html | 597 +++++++++++++-------- man/VWPre.Rd | 4 man/bin_prop.Rd | 2 man/plot_avg_contour.Rd | 2 vignettes/VWPre_Basic_Preprocessing.Rmd | 6 vignettes/VWPre_Message_Alignment.Rmd | 272 ++++----- vignettes/VWPre_Plotting.Rmd | 7 25 files changed, 2103 insertions(+), 1419 deletions(-)
Title: Tidy Dataframes and Expressions with Statistical Details
Description: Utilities for producing dataframes with rich details for the
most common types of statistical approaches and tests: parametric,
nonparametric, robust, and Bayesian t-test, one-way ANOVA, correlation
analyses, contingency table analyses, and meta-analyses. The functions
are pipe-friendly and provide a consistent syntax to work with tidy
data. These dataframes additionally contain expressions with
statistical details, and can be used in graphing packages. This
package also forms the statistical processing backend for
'ggstatsplot'. References: Patil (2021) <doi:10.21105/joss.03236>.
Author: Indrajeet Patil [cre, aut, cph]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between statsExpressions versions 1.7.1 dated 2025-07-27 and 1.7.2 dated 2025-12-06
DESCRIPTION | 20 +-- MD5 | 24 ++-- NEWS.md | 4 R/globals.R | 109 +++++++++--------- R/one-sample-test.R | 208 ++++++++++++++++++------------------ README.md | 14 +- build/vignette.rds |binary inst/doc/statsExpressions.Rmd | 3 inst/doc/statsExpressions.html | 18 +-- man/figures/README-t_two-1.png |binary tests/testthat/_snaps/one-sample.md | 76 ++++++------- tests/testthat/test-one-sample.R | 2 vignettes/statsExpressions.Rmd | 3 13 files changed, 240 insertions(+), 241 deletions(-)
More information about statsExpressions at CRAN
Permanent link
Title: Text Analysis for All
Description: An R 'shiny' app designed for diverse text analysis tasks, offering a wide range of methodologies tailored to Natural Language Processing (NLP) needs.
It is a versatile, general-purpose tool for analyzing textual data.
'tall' features a comprehensive workflow, including data cleaning, preprocessing, statistical analysis, and visualization, all integrated for effective text analysis.
Author: Massimo Aria [aut, cre, cph] ,
Maria Spano [aut] ,
Luca D'Aniello [aut] ,
Corrado Cuccurullo [ctb] ,
Michelangelo Misuraca [ctb]
Maintainer: Massimo Aria <aria@unina.it>
Diff between tall versions 0.4.0 dated 2025-10-23 and 0.5.0 dated 2025-12-06
DESCRIPTION | 21 MD5 | 63 NAMESPACE | 7 NEWS.md | 49 R/RcppExports.R | 24 R/calculate_ngram_is.R |only R/reinert.R | 153 R/txt_recode_fast.R |only R/zzz.R | 9 inst/CITATION |only inst/tall/cssTags.R |only inst/tall/doc_classification.R |only inst/tall/documents.R |only inst/tall/edit.R |only inst/tall/featureroles.R |only inst/tall/filters_groups.R |only inst/tall/header.R |only inst/tall/helpContent.R | 469 ++ inst/tall/home.R |only inst/tall/import.R |only inst/tall/keyness.R |only inst/tall/libraries.R | 1108 ++++- inst/tall/overview.R |only inst/tall/preprocessing.R |only inst/tall/report.R |only inst/tall/server.R | 5040 ------------------------ inst/tall/settings.R |only inst/tall/tallAI.R | 1399 ++++-- inst/tall/tallFunctions.R | 8405 ++++++++++++++++++++++++++++++++--------- inst/tall/ui.R | 4153 -------------------- inst/tall/words.R |only inst/tall/www/images |only inst/tall/www/tall_logo.jpg |binary man/calculate_ngram_is.Rd |only man/process_multiwords_fast.Rd |only man/reinert.Rd | 4 man/txt_recode_batch_cpp.Rd |only man/txt_recode_cpp.Rd |only man/txt_recode_fast.Rd |only man/txt_recode_ngram_cpp.Rd |only man/txt_recode_ngram_fast.Rd |only src/RcppExports.cpp | 87 src/is_calculation.cpp |only src/ngram_generation.cpp |only src/text_recode.cpp |only 45 files changed, 9320 insertions(+), 11671 deletions(-)
Title: Interface to Species Occurrence Data Sources
Description: A programmatic interface to many species occurrence data sources,
including Global Biodiversity Information Facility ('GBIF'), 'iNaturalist',
'eBird', Integrated Digitized 'Biocollections' ('iDigBio'), 'VertNet',
Ocean 'Biogeographic' Information System ('OBIS'), and
Atlas of Living Australia ('ALA'). Includes functionality for retrieving
species occurrence data, and combining those data.
Author: Hannah Owens [aut, cre] ,
Vijay Barve [aut] ,
Scott Chamberlain [aut] ,
Karthik Ram [ctb],
Ted Hart [ctb],
rOpenSci [fnd]
Maintainer: Hannah Owens <hannah.owens@gmail.com>
Diff between spocc versions 1.2.3 dated 2024-03-06 and 1.2.4 dated 2025-12-06
DESCRIPTION | 45 +++++++++++++++++------------------ MD5 | 16 +++++++----- NEWS.md | 7 +++++ R/as.idigbio.R | 6 ++-- man/as.idigbio.Rd | 4 +-- tests/testthat/_problems |only tests/testthat/test-as.idigbio.R | 2 - tests/testthat/test-geometry.R | 29 +++++++++++----------- tests/testthat/testthat-problems.rds |only 9 files changed, 60 insertions(+), 49 deletions(-)
Title: A Simple Package for Testing R Packages
Description: Provides two convenience functions assert() and test_pkg() to
facilitate testing R packages.
Author: Yihui Xie [aut, cre] ,
Tomas Kalibera [ctb],
Steven Mortimer [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between testit versions 0.13 dated 2021-04-14 and 0.14 dated 2025-12-06
DESCRIPTION | 19 +++++++----- LICENSE |only MD5 | 11 +++---- R/testit.R | 35 +++-------------------- man/assert.Rd | 38 ++----------------------- tests/testit/test-assert.R | 68 +++++++++++++++++++++------------------------ tests/testit/test-utils.R | 27 +++++++---------- 7 files changed, 70 insertions(+), 128 deletions(-)
Title: Create Tessellated Hexagon Maps
Description: Create a hexagon tile map display from spatial polygons. Each
polygon is represented by a hexagon tile, placed as close to it's original
centroid as possible, with a focus on maintaining spatial relationship to
a focal point. Developed to aid visualisation and analysis of spatial
distributions across Australia, which can be challenging due to the
concentration of the population on the coast and wide open interior.
Author: Dianne Cook [aut, cre, ths] ,
Stephanie Kobakian [aut] ,
Matt Cowgill [ctb]
Maintainer: Dianne Cook <dicook@monash.edu>
Diff between sugarbag versions 0.1.6 dated 2022-11-09 and 0.1.9 dated 2025-12-06
sugarbag-0.1.6/sugarbag/R/read_shape.R |only sugarbag-0.1.6/sugarbag/man/read_shape.Rd |only sugarbag-0.1.9/sugarbag/DESCRIPTION | 29 - sugarbag-0.1.9/sugarbag/MD5 | 37 - sugarbag-0.1.9/sugarbag/NAMESPACE | 1 sugarbag-0.1.9/sugarbag/NEWS.md | 15 sugarbag-0.1.9/sugarbag/R/allocate.R | 14 sugarbag-0.1.9/sugarbag/R/data.R | 17 sugarbag-0.1.9/sugarbag/R/fortify_sfc.R | 7 sugarbag-0.1.9/sugarbag/README.md | 171 ++---- sugarbag-0.1.9/sugarbag/build/vignette.rds |binary sugarbag-0.1.9/sugarbag/inst/CITATION | 23 sugarbag-0.1.9/sugarbag/inst/doc/Tasmania.R | 36 - sugarbag-0.1.9/sugarbag/inst/doc/Tasmania.Rmd | 2 sugarbag-0.1.9/sugarbag/inst/doc/Tasmania.html | 267 +++++----- sugarbag-0.1.9/sugarbag/inst/france |only sugarbag-0.1.9/sugarbag/man/figures/README-unnamed-chunk-2-1.png |only sugarbag-0.1.9/sugarbag/man/figures/README-unnamed-chunk-4-1.png |only sugarbag-0.1.9/sugarbag/man/figures/README-unnamed-chunk-5-1.png |only sugarbag-0.1.9/sugarbag/man/figures/README-unnamed-chunk-6-1.png |only sugarbag-0.1.9/sugarbag/man/fp19.Rd | 17 sugarbag-0.1.9/sugarbag/man/sugarbag-package.Rd | 9 sugarbag-0.1.9/sugarbag/vignettes/Tasmania.Rmd | 2 23 files changed, 330 insertions(+), 317 deletions(-)
Title: Modified Poisson Regression for Binary Outcome and Related
Methods
Description: Modified Poisson, logistic and least-squares regression analyses for binary outcomes of Zou (2004) <doi:10.1093/aje/kwh090>, Noma (2025)<Forthcoming>, and Cheung (2007) <doi:10.1093/aje/kwm223> have been standard multivariate analysis methods to estimate risk ratio and risk difference in clinical and epidemiological studies. This R package involves an easy-to-handle function to implement these analyses by simple commands. Missing data analysis tools (multiple imputation) are also involved. In addition, recent studies have shown the ordinary robust variance estimator possibly has serious bias under small or moderate sample size situations for these methods. This package also provides computational tools to calculate alternative accurate confidence intervals.
Author: Hisashi Noma [aut, cre]
Maintainer: Hisashi Noma <noma@ism.ac.jp>
Diff between rqlm versions 3.2-1 dated 2025-11-24 and 4.1-1 dated 2025-12-06
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++++------ NAMESPACE | 4 +++- NEWS.md | 4 ++++ R/rqlm.r | 2 +- R/ttemsm.r |only data/exdata04.RData |only man/exdata04.Rd |only man/qlogist.Rd | 2 +- man/rqlm.Rd | 5 +++-- man/ttemsm.Rd |only 11 files changed, 26 insertions(+), 15 deletions(-)
Title: Bayesian Estimation of the Evolutionary Rate Matrix
Description: The Evolutionary Rate Matrix is a variance-covariance matrix which describes both the rates of trait evolution and the evolutionary correlation among multiple traits. This package has functions to estimate these parameters using Bayesian MCMC. It is possible to test if the pattern of evolutionary correlations among traits has changed between predictive regimes painted along the branches of the phylogenetic tree. Regimes can be created a priori or estimated as part of the MCMC under a joint estimation approach. The package has functions to run MCMC chains, plot results, evaluate convergence, and summarize posterior distributions.
Author: Daniel Caetano [aut, cre],
Luke Harmon [aut]
Maintainer: Daniel Caetano <caetanods1@gmail.com>
Diff between ratematrix versions 1.2.4 dated 2022-06-03 and 1.2.5 dated 2025-12-06
ratematrix-1.2.4/ratematrix/inst/doc/Intro_on_the_package.html |only ratematrix-1.2.4/ratematrix/inst/doc/Making_prior_on_ratematrix.html |only ratematrix-1.2.4/ratematrix/inst/doc/Set_custom_starting_point.html |only ratematrix-1.2.5/ratematrix/DESCRIPTION | 8 - ratematrix-1.2.5/ratematrix/MD5 | 44 ++++---- ratematrix-1.2.5/ratematrix/NAMESPACE | 3 ratematrix-1.2.5/ratematrix/R/ratematrix-package.R | 2 ratematrix-1.2.5/ratematrix/R/ratematrixJointMCMC.R | 48 ++++++++- ratematrix-1.2.5/ratematrix/R/ratematrixMCMC.R | 15 ++- ratematrix-1.2.5/ratematrix/build/vignette.rds |binary ratematrix-1.2.5/ratematrix/inst/doc/Intro_on_the_package.R | 18 +-- ratematrix-1.2.5/ratematrix/inst/doc/Intro_on_the_package.Rmd | 4 ratematrix-1.2.5/ratematrix/inst/doc/Intro_on_the_package.pdf |only ratematrix-1.2.5/ratematrix/inst/doc/Making_prior_on_ratematrix.R | 50 +++++----- ratematrix-1.2.5/ratematrix/inst/doc/Making_prior_on_ratematrix.Rmd | 4 ratematrix-1.2.5/ratematrix/inst/doc/Making_prior_on_ratematrix.pdf |only ratematrix-1.2.5/ratematrix/inst/doc/Set_custom_starting_point.R | 22 ++-- ratematrix-1.2.5/ratematrix/inst/doc/Set_custom_starting_point.Rmd | 4 ratematrix-1.2.5/ratematrix/inst/doc/Set_custom_starting_point.pdf |only ratematrix-1.2.5/ratematrix/man/ratematrix.Rd | 1 ratematrix-1.2.5/ratematrix/man/ratematrixJointMCMC.Rd | 2 ratematrix-1.2.5/ratematrix/src/Makevars | 2 ratematrix-1.2.5/ratematrix/src/Makevars.win | 2 ratematrix-1.2.5/ratematrix/vignettes/Intro_on_the_package.Rmd | 4 ratematrix-1.2.5/ratematrix/vignettes/Making_prior_on_ratematrix.Rmd | 4 ratematrix-1.2.5/ratematrix/vignettes/Set_custom_starting_point.Rmd | 4 26 files changed, 142 insertions(+), 99 deletions(-)
Title: Detecting Differentially Variable Genes Using the Mixture of
Marginal Distributions
Description: Gene selection based on variance using the marginal distributions of gene profiles that characterized by a mixture of three-component multivariate distributions. Please see the reference: Li X, Fu Y, Wang X, DeMeo DL, Tantisira K, Weiss ST, Qiu W. (2018) <doi:10.1155/2018/6591634>.
Author: Xuan Li [aut, ctb],
Yuejiao Fu [aut, ctb],
Xiaogang Wang [aut, ctb],
Dawn L. DeMeo [aut, ctb],
Kelan Tantisira [aut, ctb],
Scott T. Weiss [aut, ctb],
Weiliang Qiu [aut, cre]
Maintainer: Weiliang Qiu <weiliang.qiu@gmail.com>
Diff between MMDvariance versions 0.0.9 dated 2018-07-27 and 0.1.0 dated 2025-12-06
DESCRIPTION | 8 +++--- MD5 | 8 +++--- NEWS | 2 + man/gsMMD.v.Rd | 41 +++++++++++++++++++-------------- man/plotHistDensity.v.Rd | 57 ++++++++++++++++++++++++----------------------- 5 files changed, 64 insertions(+), 52 deletions(-)
Title: A Bridge Between 'keras' and 'tidymodels'
Description: Provides a seamless bridge between 'keras' and the 'tidymodels'
frameworks. It allows for the dynamic creation of 'parsnip' model
specifications for 'keras' models.
Author: David Diaz [aut, cre]
Maintainer: David Diaz <daviddrsch@gmail.com>
Diff between kerasnip versions 0.0.3 dated 2025-09-18 and 0.1.0 dated 2025-12-06
DESCRIPTION | 8 MD5 | 48 R/create_keras_spec_helpers.R | 518 ++++---- README.md | 13 build/vignette.rds |binary inst/doc/applications.html | 58 inst/doc/autoplot_uniqueness.html | 38 inst/doc/functional_api.R | 6 inst/doc/functional_api.Rmd | 6 inst/doc/functional_api.html | 18 inst/doc/getting_started.html | 214 +-- inst/doc/tuning_fit_compile_args.html | 376 +++--- inst/doc/workflows_functional.R | 16 inst/doc/workflows_functional.Rmd | 18 inst/doc/workflows_functional.html | 607 ++++----- inst/doc/workflows_sequential.R | 8 inst/doc/workflows_sequential.Rmd | 8 inst/doc/workflows_sequential.html | 1616 ++++++++++++-------------- man/inp_spec.Rd | 15 tests/testthat/test_e2e_func_classification.R | 8 tests/testthat/test_e2e_func_regression.R | 456 +++---- tests/testthat/test_inp_spec.R | 87 - vignettes/functional_api.Rmd | 6 vignettes/workflows_functional.Rmd | 18 vignettes/workflows_sequential.Rmd | 8 25 files changed, 2116 insertions(+), 2058 deletions(-)
Title: Exploratory Graph Analysis – a Framework for Estimating the
Number of Dimensions in Multivariate Data using Network
Psychometrics
Description: Implements the Exploratory Graph Analysis (EGA) framework for dimensionality
and psychometric assessment. EGA estimates the number of dimensions in
psychological data using network estimation methods and community detection
algorithms. A bootstrap method is provided to assess the stability of dimensions
and items. Fit is evaluated using the Entropy Fit family of indices. Unique
Variable Analysis evaluates the extent to which items are locally dependent (or
redundant). Network loadings provide similar information to factor loadings and
can be used to compute network scores. A bootstrap and permutation approach are
available to assess configural and metric invariance. Hierarchical structures
can be detected using Hierarchical EGA. Time series and intensive longitudinal
data can be analyzed using Dynamic EGA, supporting individual, group, and
population level assessments.
Author: Hudson Golino [aut, cre] ,
Alexander Christensen [aut] ,
Robert Moulder [ctb] ,
Luis E. Garrido [ctb] ,
Laura Jamison [ctb] ,
Dingjing Shi [ctb]
Maintainer: Hudson Golino <hfg9s@virginia.edu>
Diff between EGAnet versions 2.3.0 dated 2025-04-09 and 2.4.0 dated 2025-12-06
EGAnet-2.3.0/EGAnet/R/EGM.R |only EGAnet-2.3.0/EGAnet/R/EGM.compare.R |only EGAnet-2.3.0/EGAnet/R/network.generalizability.R |only EGAnet-2.3.0/EGAnet/R/network.nonconvex.R |only EGAnet-2.3.0/EGAnet/man/EGM.Rd |only EGAnet-2.3.0/EGAnet/man/EGM.compare.Rd |only EGAnet-2.3.0/EGAnet/man/network.nonconvex.Rd |only EGAnet-2.4.0/EGAnet/DESCRIPTION | 30 EGAnet-2.4.0/EGAnet/MD5 | 95 +- EGAnet-2.4.0/EGAnet/NAMESPACE | 20 EGAnet-2.4.0/EGAnet/NEWS | 43 EGAnet-2.4.0/EGAnet/R/EGA.R | 8 EGAnet-2.4.0/EGAnet/R/EGAnet.R | 2 EGAnet-2.4.0/EGAnet/R/EGM.optimizations.R | 777 +++++++++------- EGAnet-2.4.0/EGAnet/R/auto.correlate.R | 29 EGAnet-2.4.0/EGAnet/R/bootEGA.R | 17 EGAnet-2.4.0/EGAnet/R/community.unidimensional.R | 228 ++-- EGAnet-2.4.0/EGAnet/R/compare.EGA.plots.R | 108 +- EGAnet-2.4.0/EGAnet/R/dynEGA.R | 923 +++++++++++++++----- EGAnet-2.4.0/EGAnet/R/dynEGA.ind.pop.R | 68 + EGAnet-2.4.0/EGAnet/R/dynamic.network.compare.R |only EGAnet-2.4.0/EGAnet/R/genTEFI.R | 64 - EGAnet-2.4.0/EGAnet/R/glla.R | 259 ++++- EGAnet-2.4.0/EGAnet/R/helpers.R | 21 EGAnet-2.4.0/EGAnet/R/hierEGA.R | 10 EGAnet-2.4.0/EGAnet/R/itemDiagnostics.R | 84 + EGAnet-2.4.0/EGAnet/R/known.graph.R |only EGAnet-2.4.0/EGAnet/R/net.loads.R | 102 +- EGAnet-2.4.0/EGAnet/R/network.compare.R | 24 EGAnet-2.4.0/EGAnet/R/network.estimation.R | 47 - EGAnet-2.4.0/EGAnet/R/network.fit.R |only EGAnet-2.4.0/EGAnet/R/network.predictability.R | 17 EGAnet-2.4.0/EGAnet/R/network.regularization.R |only EGAnet-2.4.0/EGAnet/R/plot_clusters.R |only EGAnet-2.4.0/EGAnet/R/regularization.R |only EGAnet-2.4.0/EGAnet/R/riEGA.R | 17 EGAnet-2.4.0/EGAnet/R/simEGM.R | 628 +++++++++++-- EGAnet-2.4.0/EGAnet/R/tefi.R | 357 +++---- EGAnet-2.4.0/EGAnet/inst/eganet-qr.png |only EGAnet-2.4.0/EGAnet/man/EGA.Rd | 3 EGAnet-2.4.0/EGAnet/man/auto.correlate.Rd | 6 EGAnet-2.4.0/EGAnet/man/community.unidimensional.Rd | 24 EGAnet-2.4.0/EGAnet/man/compare.EGA.plots.Rd | 6 EGAnet-2.4.0/EGAnet/man/dynEGA.Rd | 71 + EGAnet-2.4.0/EGAnet/man/dynEGA.ind.pop.Rd | 57 + EGAnet-2.4.0/EGAnet/man/dynamic.network.compare.Rd |only EGAnet-2.4.0/EGAnet/man/genTEFI.Rd | 32 EGAnet-2.4.0/EGAnet/man/glla.Rd | 54 - EGAnet-2.4.0/EGAnet/man/itemDiagnostics.Rd | 8 EGAnet-2.4.0/EGAnet/man/known.graph.Rd |only EGAnet-2.4.0/EGAnet/man/net.loads.Rd | 21 EGAnet-2.4.0/EGAnet/man/network.fit.Rd |only EGAnet-2.4.0/EGAnet/man/network.predictability.Rd | 12 EGAnet-2.4.0/EGAnet/man/network.regularization.Rd |only EGAnet-2.4.0/EGAnet/man/plot_clusters.Rd |only EGAnet-2.4.0/EGAnet/man/riEGA.Rd | 7 EGAnet-2.4.0/EGAnet/man/simEGM.Rd | 60 - EGAnet-2.4.0/EGAnet/man/tefi.Rd | 8 58 files changed, 3016 insertions(+), 1331 deletions(-)
Title: Cytokine Profiling Analysis Tool
Description: Provides comprehensive cytokine profiling analysis through quality control using biologically meaningful cutoffs on raw cytokine measurements and by testing for distributional symmetry to recommend appropriate transformations. Offers exploratory data analysis with summary statistics, enhanced boxplots, and barplots, along with univariate and multivariate analytical capabilities for in-depth cytokine profiling such as Principal Component Analysis based on Andrzej Maćkiewicz and Waldemar Ratajczak (1993) <doi:10.1016/0098-3004(93)90090-R>, Sparse Partial Least Squares Discriminant Analysis based on Lê Cao K-A, Boitard S, and Besse P (2011) <doi:10.1186/1471-2105-12-253>, Random Forest based on Breiman, L. (2001) <doi:10.1023/A:1010933404324>, and Extreme Gradient Boosting based on Tianqi Chen and Carlos Guestrin (2016) <doi:10.1145/2939672.2939785>.
Author: Shubh Saraswat [cre, aut, cph] ,
Xiaohua Douglas Zhang [aut]
Maintainer: Shubh Saraswat <shubh.saraswat00@gmail.com>
Diff between CytoProfile versions 0.2.2 dated 2025-09-04 and 0.2.3 dated 2025-12-06
DESCRIPTION | 10 - MD5 | 54 +++---- NAMESPACE | 1 NEWS.md | 8 + R/CytoProfile-package.R | 1 R/cyt_xgb.R | 241 +++++++++++++++++++-------------- README.md | 6 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/getting_started.R | 9 - inst/doc/getting_started.Rmd | 12 - inst/doc/getting_started.html | 45 +++--- man/cyt_xgb.Rd | 45 ++++-- man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/figures/readme-ML1-1.png |binary man/figures/readme-ML1-2.png |binary man/figures/readme-Multivariate2-1.png |binary man/figures/readme-Multivariate2-2.png |binary man/figures/readme-Multivariate2-3.png |binary man/figures/readme-Multivariate2-4.png |binary man/figures/readme-Multivariate2-5.png |binary man/figures/readme-Multivariate2-6.png |binary man/figures/readme-Multivariate2-7.png |binary man/figures/readme-Multivariate2-8.png |binary man/figures/readme-Multivariate2-9.png |binary vignettes/getting_started.Rmd | 12 - 30 files changed, 259 insertions(+), 186 deletions(-)
Title: Bayesian Methods for State Space Models
Description: Implements methods for Bayesian analysis of State Space Models.
Includes implementations of the Particle Marginal Metropolis-Hastings
algorithm described in Andrieu et al. (2010)
<doi:10.1111/j.1467-9868.2009.00736.x> and automatic tuning inspired by
Pitt et al. (2012) <doi:10.1016/j.jeconom.2012.06.004> and J. Dahlin and
T. B. Schön (2019) <doi:10.18637/jss.v088.c02>.
Author: Bjarke Hautop [aut, cre, cph]
Maintainer: Bjarke Hautop <bjarke.hautop@gmail.com>
Diff between bayesSSM versions 0.7.0 dated 2025-08-26 and 0.7.1 dated 2025-12-06
bayesSSM-0.7.0/bayesSSM/R/ess.R |only bayesSSM-0.7.0/bayesSSM/tests/testthat/test-ess.R |only bayesSSM-0.7.1/bayesSSM/DESCRIPTION | 8 bayesSSM-0.7.1/bayesSSM/LICENSE | 4 bayesSSM-0.7.1/bayesSSM/MD5 | 101 bayesSSM-0.7.1/bayesSSM/NAMESPACE | 66 bayesSSM-0.7.1/bayesSSM/NEWS.md | 4 bayesSSM-0.7.1/bayesSSM/R/ESS.R |only bayesSSM-0.7.1/bayesSSM/R/RcppExports.R | 30 bayesSSM-0.7.1/bayesSSM/R/auxiliary_filter.R | 431 +-- bayesSSM-0.7.1/bayesSSM/R/bayesSSM-package.R | 30 bayesSSM-0.7.1/bayesSSM/R/bootstrap_filter.R | 341 +- bayesSSM-0.7.1/bayesSSM/R/particle_filter-doc.R | 194 - bayesSSM-0.7.1/bayesSSM/R/particle_filter.R | 30 bayesSSM-0.7.1/bayesSSM/R/particle_filter_core.R | 535 +-- bayesSSM-0.7.1/bayesSSM/R/pmmh.R | 1249 ++++---- bayesSSM-0.7.1/bayesSSM/R/pmmh_tuning.R | 635 ++-- bayesSSM-0.7.1/bayesSSM/R/print.R | 132 bayesSSM-0.7.1/bayesSSM/R/resample_move_filter.R | 472 +-- bayesSSM-0.7.1/bayesSSM/R/resampling.R | 138 bayesSSM-0.7.1/bayesSSM/R/resampling_old.R | 304 +- bayesSSM-0.7.1/bayesSSM/R/rhat.R | 214 - bayesSSM-0.7.1/bayesSSM/R/summary.R | 108 bayesSSM-0.7.1/bayesSSM/R/utils.R | 305 +- bayesSSM-0.7.1/bayesSSM/README.md | 449 +-- bayesSSM-0.7.1/bayesSSM/build/partial.rdb |binary bayesSSM-0.7.1/bayesSSM/build/vignette.rds |binary bayesSSM-0.7.1/bayesSSM/inst/WORDLIST |only bayesSSM-0.7.1/bayesSSM/inst/doc/bayesSSM.R | 218 - bayesSSM-0.7.1/bayesSSM/inst/doc/bayesSSM.Rmd | 392 +- bayesSSM-0.7.1/bayesSSM/inst/doc/bayesSSM.html | 1072 +++---- bayesSSM-0.7.1/bayesSSM/man/auxiliary_filter.Rd | 6 bayesSSM-0.7.1/bayesSSM/man/bayesSSM-package.Rd | 4 bayesSSM-0.7.1/bayesSSM/man/bootstrap_filter.Rd | 6 bayesSSM-0.7.1/bayesSSM/man/dot-particle_filter_core.Rd | 6 bayesSSM-0.7.1/bayesSSM/man/ess.Rd | 4 bayesSSM-0.7.1/bayesSSM/man/particle_filter.Rd | 34 bayesSSM-0.7.1/bayesSSM/man/particle_filter_common_params.Rd | 2 bayesSSM-0.7.1/bayesSSM/man/particle_filter_model_specification.Rd | 4 bayesSSM-0.7.1/bayesSSM/man/pmmh.Rd | 488 +-- bayesSSM-0.7.1/bayesSSM/man/resample_move_filter.Rd | 10 bayesSSM-0.7.1/bayesSSM/tests/testthat/test-ESS.R |only bayesSSM-0.7.1/bayesSSM/tests/testthat/test-auxiliary_filter.R | 108 bayesSSM-0.7.1/bayesSSM/tests/testthat/test-bootstrap_filter.R | 460 +-- bayesSSM-0.7.1/bayesSSM/tests/testthat/test-particle_filter_core.R | 216 - bayesSSM-0.7.1/bayesSSM/tests/testthat/test-pmmh.R | 1341 ++++----- bayesSSM-0.7.1/bayesSSM/tests/testthat/test-pmmh_tuning.R | 1422 +++++----- bayesSSM-0.7.1/bayesSSM/tests/testthat/test-resample_move_filter.R | 124 bayesSSM-0.7.1/bayesSSM/tests/testthat/test-resampling.R | 441 +-- bayesSSM-0.7.1/bayesSSM/tests/testthat/test-resampling_old.R | 300 +- bayesSSM-0.7.1/bayesSSM/tests/testthat/test-rhat.R | 164 - bayesSSM-0.7.1/bayesSSM/tests/testthat/test-summary.R | 52 bayesSSM-0.7.1/bayesSSM/tests/testthat/test-utils.R | 120 bayesSSM-0.7.1/bayesSSM/vignettes/bayesSSM.Rmd | 392 +- 54 files changed, 6587 insertions(+), 6579 deletions(-)
Title: Connect to ODBC Compatible Databases (using the DBI Interface)
Description: A DBI-compatible interface to ODBC databases.
Author: Jim Hester [aut],
Hadley Wickham [aut, cre],
Oliver Gjoneski [aut],
Simon Couch [aut],
lexicalunit [cph] ,
Google Inc. [cph] ,
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between odbc versions 1.6.3 dated 2025-09-05 and 1.6.4 dated 2025-12-06
DESCRIPTION | 8 +- MD5 | 64 ++++++++++---------- NEWS.md | 12 +++ R/dbi-connection.R | 22 +++++++ R/dbi-driver.R | 15 +++- R/dbi-result.R | 8 ++ R/dbi-table.R | 14 ++++ R/driver-databricks.R | 4 - R/driver-oracle.R | 4 - R/driver-redshift.R | 4 - R/driver-snowflake.R | 6 + R/odbc-package.R | 2 R/odbc.R | 3 build/vignette.rds |binary man/ConnectionAttributes.Rd | 18 +++++ man/OdbcConnection.Rd | 4 - man/databricks.Rd | 2 man/dbConnect-OdbcDriver-method.Rd | 9 ++ man/dbListTables-OdbcConnection-method.Rd | 4 - man/driver-Snowflake.Rd | 4 - man/odbc-package.Rd | 3 man/odbcListConfig.Rd | 2 man/odbcListDrivers.Rd | 2 man/odbcSetTransactionIsolationLevel.Rd | 4 - man/redshift.Rd | 2 man/snowflake.Rd | 2 src/cctz/src/time_zone_info.cc | 34 ++++++----- src/nanodbc/nanodbc.cpp | 2 src/odbc_result.cpp | 92 ++++++++++++++++-------------- src/odbc_result.h | 4 - src/r_types.h | 6 + tests/testthat/test-driver-oracle.R | 27 ++++++++ tests/testthat/test-driver-sql-server.R | 27 ++++++++ 33 files changed, 286 insertions(+), 128 deletions(-)
Title: Working with the Neotoma Paleoecology Database
Description: Access and manipulation of data using the Neotoma Paleoecology Database.
<https://api.neotomadb.org/api-docs/>.
Author: Dominguez Vidana Socorro [aut, cre] ,
Simon Goring [aut]
Maintainer: Dominguez Vidana Socorro <dominguezvid@wisc.edu>
Diff between neotoma2 versions 1.0.9 dated 2025-11-25 and 1.0.10 dated 2025-12-06
DESCRIPTION | 8 +++---- MD5 | 36 ++++++++++++++++----------------- NEWS.md | 5 ++++ inst/doc/neotoma2-package.R | 32 +++++++++-------------------- inst/doc/neotoma2-package.Rmd | 34 +++++++++++-------------------- inst/doc/neotoma2-package.html | 8 +++---- tests/testthat/test_c.R | 1 tests/testthat/test_doi.R | 3 -- tests/testthat/test_filter.R | 4 ++- tests/testthat/test_get_contacts.R | 2 + tests/testthat/test_get_publications.R | 3 ++ tests/testthat/test_get_table.R | 13 +++++++---- tests/testthat/test_get_taxa.R | 1 tests/testthat/test_get_taxon.R | 1 tests/testthat/test_parse_location.R | 1 tests/testthat/test_sites.R | 21 ------------------- tests/testthat/test_specimens.R | 7 ------ tests/testthat/test_speleothems.R | 17 --------------- vignettes/neotoma2-package.Rmd | 34 +++++++++++-------------------- 19 files changed, 88 insertions(+), 143 deletions(-)
Title: Sample Generalized Random Dot Product Graphs in Linear Time
Description: Samples generalized random product graphs, a generalization of
a broad class of network models. Given matrices X, S, and Y with with
non-negative entries, samples a matrix with expectation X S Y^T and
independent Poisson or Bernoulli entries using the fastRG algorithm of
Rohe et al. (2017) <https://www.jmlr.org/papers/v19/17-128.html>. The
algorithm first samples the number of edges and then puts them down
one-by-one. As a result it is O(m) where m is the number of edges, a
dramatic improvement over element-wise algorithms that which require
O(n^2) operations to sample a random graph, where n is the number of
nodes.
Author: Alex Hayes [aut, cre, cph] ,
Karl Rohe [aut, cph],
Jun Tao [aut],
Xintian Han [aut],
Norbert Binkiewicz [aut]
Maintainer: Alex Hayes <alexpghayes@gmail.com>
Diff between fastRG versions 0.3.3 dated 2025-07-24 and 0.4.0 dated 2025-12-06
DESCRIPTION | 10 + MD5 | 70 +++++++------ NEWS.md | 30 +++++ R/directed_dcsbm.R | 69 ++++++++----- R/directed_erdos_renyi.R | 33 ++++-- R/directed_factor_model.R | 34 ++++-- R/expected-degrees.R | 37 +++---- R/expected-spectra.R | 37 ++++--- R/sample_edgelist.R | 47 +++++--- R/sample_igraph.R | 23 ++-- R/sample_sparse.R | 15 +- R/sample_tidygraph.R | 15 +- R/undirected_chung_lu.R | 19 ++- R/undirected_dcsbm.R | 131 +++++++++++++++++++----- R/undirected_erdos_renyi.R | 20 ++- R/undirected_factor_model.R | 36 ++++-- R/undirected_mmsbm.R | 46 +++++--- R/undirected_overlapping_sbm.R | 47 +++++--- R/undirected_planted_partition.R | 32 +++--- R/undirected_sbm.R | 36 +++++- README.md | 78 +++++++------- build |only inst |only man/dcsbm.Rd | 31 ++++- man/expected_edges.Rd | 8 - man/mmsbm.Rd | 2 man/planted_partition.Rd | 17 ++- man/sample_edgelist.matrix.Rd | 6 - man/sbm.Rd | 36 +++++- tests/testthat/test-allow_self_loops.R | 19 ++- tests/testthat/test-degree-scaling.R | 147 +++++++++------------------- tests/testthat/test-directedness.R | 3 tests/testthat/test-poisson_edges.R | 22 ++-- tests/testthat/test-population-spectra.R |only tests/testthat/test-retain-isolated-nodes.R | 4 tests/testthat/test-sampling-index-bug.R | 18 +++ vignettes |only 37 files changed, 732 insertions(+), 446 deletions(-)
Title: Embed 'SWI'-'Prolog'
Description: Interface to 'SWI'-'Prolog', <https://www.swi-prolog.org/>. This package is normally not loaded directly, please refer to package 'rolog' instead. The purpose of this package is to provide the 'Prolog' runtime on systems that do not have a software installation of 'SWI'-'Prolog'.
Author: Matthias Gondan [aut, com, cre] ,
Jan Wielemaker [ctb, cph] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
Diff between rswipl versions 9.3.21 dated 2025-03-21 and 10.0.0 dated 2025-12-06
rswipl-10.0.0/rswipl/DESCRIPTION | 12 rswipl-10.0.0/rswipl/MD5 | 5195 +++++++++++----------- rswipl-10.0.0/rswipl/NEWS.md | 56 rswipl-10.0.0/rswipl/R/rswipl.R | 25 rswipl-10.0.0/rswipl/inst/patch/02-clib.patch | 4 rswipl-10.0.0/rswipl/inst/patch/03-cpp.patch | 4 rswipl-10.0.0/rswipl/inst/patch/04-cpp.patch | 4 rswipl-10.0.0/rswipl/inst/patch/patches.sh | 2 rswipl-10.0.0/rswipl/src/Makevars | 9 rswipl-10.0.0/rswipl/src/Makevars.win | 27 rswipl-10.0.0/rswipl/src/install.libs.R | 8 rswipl-10.0.0/rswipl/src/rswipl.cpp | 45 rswipl-10.0.0/rswipl/src/swipl |only rswipl-10.0.0/rswipl/tests/testthat/test-rswipl.R | 19 rswipl-9.3.21/rswipl/configure |only rswipl-9.3.21/rswipl/configure.win |only rswipl-9.3.21/rswipl/inst/patch/01-ssl.patch |only rswipl-9.3.21/rswipl/src/swipl-devel |only 18 files changed, 2792 insertions(+), 2618 deletions(-)
Title: Standardized Git Repository Data
Description: Obtain standardized data from multiple 'Git' services, including 'GitHub' and 'GitLab'.
Designed to be 'Git' service-agnostic, this package assists teams with activities spread across various
'Git' platforms by providing a unified way to access repository data.
Author: Maciej Banas [aut, cre],
Kamil Koziej [aut],
Karolina Marcinkowska [aut],
Matt Secrest [aut]
Maintainer: Maciej Banas <banasmaciek@gmail.com>
Diff between GitStats versions 2.3.7 dated 2025-10-16 and 2.3.8 dated 2025-12-06
GitStats-2.3.7/GitStats/tests/testthat/test-show_orgs.R |only GitStats-2.3.8/GitStats/DESCRIPTION | 8 GitStats-2.3.8/GitStats/MD5 | 141 +++++----- GitStats-2.3.8/GitStats/NAMESPACE | 1 GitStats-2.3.8/GitStats/NEWS.md | 8 GitStats-2.3.8/GitStats/R/EngineGraphQL.R | 14 GitStats-2.3.8/GitStats/R/EngineGraphQLGitHub.R | 16 - GitStats-2.3.8/GitStats/R/EngineGraphQLGitLab.R | 40 +- GitStats-2.3.8/GitStats/R/EngineRest.R | 16 - GitStats-2.3.8/GitStats/R/EngineRestGitHub.R | 12 GitStats-2.3.8/GitStats/R/EngineRestGitLab.R | 22 - GitStats-2.3.8/GitStats/R/GitHost.R | 22 - GitStats-2.3.8/GitStats/R/GitHostGitHub.R | 10 GitStats-2.3.8/GitStats/R/GitHostGitLab.R | 4 GitStats-2.3.8/GitStats/R/GitStats.R | 141 +++++----- GitStats-2.3.8/GitStats/R/get_commits.R | 14 GitStats-2.3.8/GitStats/R/get_files.R | 8 GitStats-2.3.8/GitStats/R/get_issues.R | 14 GitStats-2.3.8/GitStats/R/get_orgs.R | 6 GitStats-2.3.8/GitStats/R/get_release_logs.R | 10 GitStats-2.3.8/GitStats/R/get_repos.R | 34 -- GitStats-2.3.8/GitStats/R/get_users.R | 12 GitStats-2.3.8/GitStats/R/gitstats_functions.R | 12 GitStats-2.3.8/GitStats/R/message_handler.R | 2 GitStats-2.3.8/GitStats/R/set_host.R | 4 GitStats-2.3.8/GitStats/R/utils.R | 6 GitStats-2.3.8/GitStats/inst/doc/get_repos_with_code.R | 4 GitStats-2.3.8/GitStats/inst/doc/get_repos_with_code.Rmd | 4 GitStats-2.3.8/GitStats/inst/doc/get_repos_with_code.html | 4 GitStats-2.3.8/GitStats/man/get_commits.Rd | 8 GitStats-2.3.8/GitStats/man/get_commits_stats.Rd | 2 GitStats-2.3.8/GitStats/man/get_files.Rd | 4 GitStats-2.3.8/GitStats/man/get_issues.Rd | 8 GitStats-2.3.8/GitStats/man/get_issues_stats.Rd | 2 GitStats-2.3.8/GitStats/man/get_orgs.Rd | 2 GitStats-2.3.8/GitStats/man/get_release_logs.Rd | 6 GitStats-2.3.8/GitStats/man/get_repos.Rd | 8 GitStats-2.3.8/GitStats/man/get_repos_trees.Rd | 6 GitStats-2.3.8/GitStats/man/get_repos_urls.Rd | 8 GitStats-2.3.8/GitStats/man/get_storage.Rd | 2 GitStats-2.3.8/GitStats/man/get_users.Rd | 6 GitStats-2.3.8/GitStats/man/set_github_host.Rd | 2 GitStats-2.3.8/GitStats/man/set_gitlab_host.Rd | 2 GitStats-2.3.8/GitStats/man/show_hosts.Rd |only GitStats-2.3.8/GitStats/tests/testthat/_snaps/00-get_orgs-GitStats.md | 8 GitStats-2.3.8/GitStats/tests/testthat/_snaps/01-get_repos-GitHub.md | 2 GitStats-2.3.8/GitStats/tests/testthat/_snaps/01-get_repos-GitLab.md | 2 GitStats-2.3.8/GitStats/tests/testthat/_snaps/01-get_repos-GitStats.md | 1 GitStats-2.3.8/GitStats/tests/testthat/_snaps/02-get_commits-GitLab.md | 2 GitStats-2.3.8/GitStats/tests/testthat/_snaps/02-get_commits-GitStats.md | 10 GitStats-2.3.8/GitStats/tests/testthat/_snaps/03-get_files_structure-GitHub.md | 8 GitStats-2.3.8/GitStats/tests/testthat/_snaps/03-get_repos_trees-GitStats.md | 3 GitStats-2.3.8/GitStats/tests/testthat/_snaps/04-get_files_content-GitLab.md | 1 GitStats-2.3.8/GitStats/tests/testthat/_snaps/05-get_files.md | 9 GitStats-2.3.8/GitStats/tests/testthat/_snaps/06-get_issues-GitStats.md | 10 GitStats-2.3.8/GitStats/tests/testthat/_snaps/get_release-GitStats.md | 10 GitStats-2.3.8/GitStats/tests/testthat/_snaps/set_host.md | 28 - GitStats-2.3.8/GitStats/tests/testthat/helper-expect-responses.R | 4 GitStats-2.3.8/GitStats/tests/testthat/helper-fixtures.R | 8 GitStats-2.3.8/GitStats/tests/testthat/helper.R | 1 GitStats-2.3.8/GitStats/tests/testthat/test-00-api-requests.R | 3 GitStats-2.3.8/GitStats/tests/testthat/test-00-get_orgs-GitLab.R | 13 GitStats-2.3.8/GitStats/tests/testthat/test-00-get_orgs-GitStats.R | 7 GitStats-2.3.8/GitStats/tests/testthat/test-01-get_repos-GitLab.R | 28 + GitStats-2.3.8/GitStats/tests/testthat/test-02-get_commits-GitStats.R | 13 GitStats-2.3.8/GitStats/tests/testthat/test-05-get_files.R | 18 + GitStats-2.3.8/GitStats/tests/testthat/test-06-get_issues-GitStats.R | 15 - GitStats-2.3.8/GitStats/tests/testthat/test-get_release-GitStats.R | 11 GitStats-2.3.8/GitStats/tests/testthat/test-get_storage.R | 14 GitStats-2.3.8/GitStats/tests/testthat/test-set_host.R | 30 +- GitStats-2.3.8/GitStats/tests/testthat/test-show.R |only GitStats-2.3.8/GitStats/tests/testthat/test-z-GitStats.R | 9 GitStats-2.3.8/GitStats/vignettes/get_repos_with_code.Rmd | 4 73 files changed, 556 insertions(+), 371 deletions(-)
Title: Flexible, Ensemble-Based Variable Selection with Potentially
Missing Data
Description: Perform variable selection in settings with possibly missing data
based on extrinsic (algorithm-specific) and intrinsic (population-level)
variable importance. Uses a Super Learner ensemble to estimate the
underlying prediction functions that give rise to estimates of variable importance.
For more information about the methods, please see Williamson and Huang (2024) <doi:10.1515/ijb-2023-0059>.
Author: Brian D. Williamson [aut, cre]
Maintainer: Brian D. Williamson <brian.d.williamson@kp.org>
Diff between flevr versions 0.0.4 dated 2023-11-30 and 0.0.5 dated 2025-12-06
flevr-0.0.4/flevr/man/flevr.Rd |only flevr-0.0.5/flevr/DESCRIPTION | 15 +- flevr-0.0.5/flevr/MD5 | 42 +++--- flevr-0.0.5/flevr/NEWS.md | 9 + flevr-0.0.5/flevr/R/biomarkers.R | 76 ++++++------ flevr-0.0.5/flevr/R/extract_importance_svm.R | 11 + flevr-0.0.5/flevr/R/extract_importance_xgboost.R | 12 + flevr-0.0.5/flevr/R/flevr-package.R | 7 - flevr-0.0.5/flevr/R/get_base_set.R | 13 +- flevr-0.0.5/flevr/README.md | 8 - flevr-0.0.5/flevr/build/partial.rdb |only flevr-0.0.5/flevr/build/vignette.rds |binary flevr-0.0.5/flevr/inst/doc/extrinsic_selection.R | 60 ++++----- flevr-0.0.5/flevr/inst/doc/extrinsic_selection.html | 10 - flevr-0.0.5/flevr/inst/doc/intrinsic_selection.R | 48 +++---- flevr-0.0.5/flevr/inst/doc/intrinsic_selection.html | 49 +++---- flevr-0.0.5/flevr/inst/doc/introduction_to_flevr.R | 8 - flevr-0.0.5/flevr/inst/doc/introduction_to_flevr.html | 2 flevr-0.0.5/flevr/man/extract_importance_svm.Rd | 7 - flevr-0.0.5/flevr/man/extract_importance_xgboost.Rd | 10 - flevr-0.0.5/flevr/man/figures |only flevr-0.0.5/flevr/man/flevr-package.Rd |only flevr-0.0.5/flevr/man/get_base_set.Rd | 2 flevr-0.0.5/flevr/tests/testthat/test-extrinsic_selection.R | 2 24 files changed, 208 insertions(+), 183 deletions(-)
Title: R Bindings to the Feather 'API'
Description: Read and write feather files, a lightweight binary columnar
data store designed for maximum speed.
Author: Hadley Wickham [aut, cre],
RStudio [cph],
LevelDB Authors [ctb]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between feather versions 0.3.5 dated 2019-09-14 and 0.4.0 dated 2025-12-06
feather-0.3.5/feather/R/RcppExports.R |only feather-0.3.5/feather/configure |only feather-0.3.5/feather/man/feather_metadata.Rd |only feather-0.3.5/feather/src |only feather-0.4.0/feather/DESCRIPTION | 22 - feather-0.4.0/feather/MD5 | 127 +--------- feather-0.4.0/feather/NAMESPACE | 18 - feather-0.4.0/feather/NEWS.md | 12 + feather-0.4.0/feather/R/class.R | 129 ----------- feather-0.4.0/feather/R/feather.R | 63 +---- feather-0.4.0/feather/R/utils.R | 17 - feather-0.4.0/feather/README.md | 2 feather-0.4.0/feather/man/feather.Rd | 13 - feather-0.4.0/feather/man/read_feather.Rd | 16 + feather-0.4.0/feather/tests/testthat.R | 8 feather-0.4.0/feather/tests/testthat/helper-roundtrip.R | 9 feather-0.4.0/feather/tests/testthat/test-class.R | 40 --- feather-0.4.0/feather/tests/testthat/test-overwrite.R | 2 feather-0.4.0/feather/tests/testthat/test-read.R | 8 feather-0.4.0/feather/tests/testthat/test-roundtrip-vector.R | 26 -- 20 files changed, 119 insertions(+), 393 deletions(-)
Title: Deploy Docs, Apps, and APIs to 'Posit Connect', 'shinyapps.io',
and 'RPubs'
Description: Programmatic deployment interface for 'RPubs',
'shinyapps.io', and 'Posit Connect'. Supported content types include R
Markdown documents, Shiny applications, Plumber APIs, plots, and
static web content.
Author: Aron Atkins [aut, cre],
Toph Allen [aut],
Hadley Wickham [aut],
Jonathan McPherson [aut],
JJ Allaire [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Aron Atkins <aron@posit.co>
Diff between rsconnect versions 1.6.2 dated 2025-11-18 and 1.7.0 dated 2025-12-06
DESCRIPTION | 6 - MD5 | 14 +-- NEWS.md | 13 +++ R/deployApp.R | 134 ++++++++++++++++++++++++++++++++----- R/http.R | 4 - man/deployApp.Rd | 16 ++++ tests/testthat/_snaps/deployApp.md | 36 +++++++++ tests/testthat/test-deployApp.R | 93 +++++++++++++++++++++++++ 8 files changed, 286 insertions(+), 30 deletions(-)
Title: Compiler for R
Description: Compile R functions annotated with type and shape
declarations for extremely fast performance and robust runtime
type checking. Supports both just-in-time (JIT) and ahead-of-time
(AOT) compilation. Compilation is performed by lowering R code to
Fortran.
Author: Tomasz Kalinowski [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>
Diff between quickr versions 0.2.0 dated 2025-08-25 and 0.2.1 dated 2025-12-06
DESCRIPTION | 8 - MD5 | 53 +++++----- NEWS.md | 15 ++ R/c-wrapper.R | 105 ++++++++++++++++---- R/manifest.R | 7 - R/preprocess-lang.R | 47 ++++++++ R/r2f.R | 84 ++++++++++------ R/subroutine.R | 16 ++- tests/testthat/_snaps/add.md | 6 - tests/testthat/_snaps/dims2f.md | 6 - tests/testthat/_snaps/div-cast.md | 18 +-- tests/testthat/_snaps/div-mod.md | 8 - tests/testthat/_snaps/example-convolve.md | 4 tests/testthat/_snaps/example-heat_diffusion.md | 14 +- tests/testthat/_snaps/example-roll_mean.md | 6 - tests/testthat/_snaps/example-viterbi.md | 20 +-- tests/testthat/_snaps/hoist-mask.md | 4 tests/testthat/_snaps/logical.md | 22 ++-- tests/testthat/_snaps/loops.md | 14 +- tests/testthat/_snaps/matrix.md | 12 +- tests/testthat/_snaps/runif.md | 20 +-- tests/testthat/_snaps/size-constraint.md | 4 tests/testthat/_snaps/unary-intrinsics.md | 126 ++++++++++++++++++------ tests/testthat/_snaps/which.md | 10 - tests/testthat/test-as-double.R | 2 tests/testthat/test-loops.R | 1 tests/testthat/test-multiple-return.R |only tests/testthat/test-unary-intrinsics.R | 57 ++++++++++ 28 files changed, 482 insertions(+), 207 deletions(-)
Title: Projection Predictive Feature Selection
Description: Performs projection predictive feature selection for generalized linear
models (Piironen, Paasiniemi, and Vehtari, 2020, <doi:10.1214/20-EJS1711>)
with or without multilevel or additive terms (Catalina, Bürkner, and
Vehtari, 2022, <https://proceedings.mlr.press/v151/catalina22a.html>), for
some ordinal and nominal regression models (Weber, Glass, and Vehtari, 2025,
<doi:10.1007/s00180-024-01506-0>), and for many other regression models
(using the latent projection by Catalina, Bürkner, and Vehtari, 2021,
<doi:10.48550/arXiv.2109.04702>, which can also be applied to most of the
former models). The package is compatible with the 'rstanarm' and 'brms'
packages, but other reference models can also be used. See the vignettes and
the documentation for more information and examples.
Author: Juho Piironen [aut],
Markus Paasiniemi [aut],
Alejandro Catalina [aut],
Frank Weber [aut],
Osvaldo Martin [cre, aut],
Aki Vehtari [aut],
Jonah Gabry [ctb],
Marco Colombo [ctb],
Paul-Christian Buerkner [ctb],
Hamada S. Badr [ctb],
Brian Sullivan [ctb], [...truncated...]
Maintainer: Osvaldo Martin <aloctavodia@gmail.com>
Diff between projpred versions 2.9.1 dated 2025-10-28 and 2.10.0 dated 2025-12-06
DESCRIPTION | 20 - MD5 | 92 ++++---- NEWS.md | 14 + R/cv_varsel.R | 17 + R/divergence_minimizers.R | 6 R/extend_family.R | 45 +++- R/formula.R | 10 R/latent.R | 20 + R/methods.R | 27 +- R/misc.R | 7 R/projfun.R | 2 R/refmodel.R | 3 R/summary_funs.R | 11 R/varsel.R | 11 build/partial.rdb |binary build/vignette.rds |binary inst/doc/latent.R | 268 ++++++++++++++++++++++++ inst/doc/latent.Rmd | 318 ++++++++++++++++++++++++++++ inst/doc/latent.html | 409 +++++++++++++++++++++++++++++++++---- inst/doc/projpred.R | 14 - inst/doc/projpred.Rmd | 25 +- inst/doc/projpred.html | 93 ++++---- man/as.matrix.projection.Rd | 2 man/as_draws_matrix.projection.Rd | 2 man/cv_varsel.Rd | 2 man/extend_family.Rd | 28 ++ man/figures/logo.svg | 97 -------- man/force_search_terms.Rd | 2 man/performances.Rd | 2 man/plot.cv_proportions.Rd | 2 man/plot.vsel.Rd | 2 man/pred-projection.Rd | 2 man/predictor_terms.Rd | 2 man/project.Rd | 2 man/refmodel-init-get.Rd | 2 man/run_cvfun.Rd | 2 man/suggest_size.Rd | 2 man/summary.vsel.Rd | 2 man/varsel.Rd | 6 tests/testthat/helpers/testers.R | 3 tests/testthat/test_augdat.R | 2 tests/testthat/test_latent.R | 35 +++ tests/testthat/test_methods_vsel.R | 33 +- tests/testthat/test_proj_predfun.R | 9 tests/testthat/test_refmodel.R | 12 - vignettes/latent.Rmd | 318 ++++++++++++++++++++++++++++ vignettes/projpred.Rmd | 25 +- 47 files changed, 1671 insertions(+), 337 deletions(-)
Title: Armadillo Client for the Armadillo Service
Description: A set of functions to manage data shared on a
'MOLGENIS Armadillo' server.
Author: Mariska Slofstra [aut, cre] ,
Sido Haakma [aut] ,
Tommy de Boer [aut] ,
Fleur Kelpin [aut] ,
Morris Swertz [aut] ,
Tim Cadman [aut]
Maintainer: Mariska Slofstra <m.k.slofstra@umcg.nl>
Diff between MolgenisArmadillo versions 2.9.1 dated 2025-06-13 and 2.9.3 dated 2025-12-06
DESCRIPTION | 8 +- MD5 | 16 ++-- NEWS.md | 3 R/utils.R | 4 + inst/doc/MolgenisArmadillo.Rmd | 2 inst/doc/MolgenisArmadillo.html | 5 - tests/testthat/test-object.R | 140 ++++++++++++++++++++-------------------- tests/testthat/test-utils.R | 9 +- vignettes/MolgenisArmadillo.Rmd | 2 9 files changed, 98 insertions(+), 91 deletions(-)
More information about MolgenisArmadillo at CRAN
Permanent link
Title: Laplace Factor Model Analysis and Evaluation
Description: Enables the generation of Laplace factor models across diverse Laplace distributions and facilitates the application of Sparse Online Principal Component (SOPC), Incremental Principal Component (IPC), Perturbation Principal Component (PPC), Stochastic Approximation Principal Component (SAPC), Sparse Principal Component (SPC) and other PC methods and Farm Test methods to these models. Evaluates the efficacy of these methods within the context of Laplace factor models by scrutinizing parameter estimation accuracy, mean square error, and the degree of sparsity.
Author: Guangbao Guo [aut, cre],
Siqi Liu [aut]
Maintainer: Guangbao Guo <ggb11111111@163.com>
Diff between LFM versions 0.3.2 dated 2025-10-10 and 0.3.3 dated 2025-12-06
DESCRIPTION | 10 +- MD5 | 14 ++- NAMESPACE | 12 ++- R/DGulPC.R |only R/DPPC.R |only R/Ftest.R | 207 +++++++++++++++++++++++++++++++++++++++++++++++----- R/factor.tests.R |only man/DGulPC.Rd |only man/DPPC.Rd |only man/Ftest.Rd | 18 ++++ man/factor.tests.Rd |only 11 files changed, 230 insertions(+), 31 deletions(-)
Title: Transforms Institutional Data into Text Files for IPEDS
Automated Import/Upload
Description: Starting from user-supplied institutional data, these scripts
transform, aggregate, and reshape the information to produce
key-value pair data files that are able to be uploaded to IPEDS (Integrated Postsecondary Education Data System)
through their submission portal <https://surveys.nces.ed.gov/ipeds/>. Starting data specifications can be found in the vignettes.
Final files are saved locally to a location of the user's choice.
User-friendly readable files can also be produced for purposes of data review and validation.
Author: Alison Lanski [aut, cre],
Shiloh Fling [aut],
Edwin Welch [aut]
Maintainer: Alison Lanski <alanski@nd.edu>
Diff between IPEDSuploadables versions 2.11.0 dated 2025-09-09 and 3.0.0 dated 2025-12-06
DESCRIPTION | 18 +++---- MD5 | 62 +++++++++++++++++++-------- NAMESPACE | 9 +++ NEWS.md | 3 + R/adm_students.R |only R/create_dummy_data_adm.R |only R/make_adm_part_B.R |only R/make_adm_part_C.R |only R/make_adm_part_D.R |only R/make_adm_part_F.R |only R/make_adm_part_G.R |only R/make_adm_part_H.R |only R/prep_adm_data_frame.R |only R/produce_adm_report.R |only R/specs_ADM.R |only README.md | 3 - build/vignette.rds |binary data/adm_students.rda |only data/part_outputs.rda |binary data/specs_ADM.rda |only data/specs_COM.rda |binary inst/doc/howto_overall_ipedsuploadables.Rmd | 18 +++++-- inst/doc/howto_overall_ipedsuploadables.html | 57 ++++++++++++++++-------- inst/doc/howto_use_autoformat.Rmd | 7 --- inst/doc/howto_use_autoformat.html | 15 ++---- inst/doc/setup_for_admissions.R |only inst/doc/setup_for_admissions.Rmd |only inst/doc/setup_for_admissions.html |only inst/doc/setup_for_completions.html | 14 ++++++ man/IPEDSuploadables-package.Rd | 3 - man/adm_students.Rd |only man/create_dummy_data_adm.Rd |only man/make_adm_part_B.Rd |only man/make_adm_part_C.Rd |only man/make_adm_part_D.Rd |only man/make_adm_part_F.Rd |only man/make_adm_part_G.Rd |only man/make_adm_part_H.Rd |only man/prep_adm_data_frame.Rd |only man/produce_adm_report.Rd |only man/specs_ADM.Rd |only tests/testthat/test-part-outputs.R | 24 ++++++++++ tests/testthat/test-prep-scripts.R | 14 ++++++ vignettes/howto_overall_ipedsuploadables.Rmd | 18 +++++-- vignettes/howto_use_autoformat.Rmd | 7 --- vignettes/setup_for_admissions.Rmd |only 46 files changed, 193 insertions(+), 79 deletions(-)
More information about IPEDSuploadables at CRAN
Permanent link
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent
access to information contained in various R models, like model
formulas, model terms, information about random effects, data that was
used to fit the model or data from response variables. 'insight'
mainly revolves around two types of functions: Functions that find
(the names of) information, starting with 'find_', and functions that
get the underlying data, starting with 'get_'. The package has a
consistent syntax and works with many different model objects, where
otherwise functions to access these information are missing.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Vincent Arel-Bundock [aut, ctb] ,
Etienne Bacher [aut, ctb] ,
Ale [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between insight versions 1.4.3 dated 2025-11-24 and 1.4.4 dated 2025-12-06
DESCRIPTION | 6 MD5 | 24 +- NEWS.md | 9 R/get_data.R | 2 R/is_converged.R | 58 ++++- inst/WORDLIST | 3 inst/doc/display.html | 370 ++++++++++++++++++------------------ man/is_converged.Rd | 27 ++ tests/testthat/test-fixest.R | 8 tests/testthat/test-get_predicted.R | 7 tests/testthat/test-is_converged.R | 17 + tests/testthat/test-panelr.R | 10 tests/testthat/test-tidymodels.R | 2 13 files changed, 326 insertions(+), 217 deletions(-)
Title: Supplements the 'gtsummary' Package for Pharmaceutical Reporting
Description: Tables summarizing clinical trial results are often complex
and require detailed tailoring prior to submission to a health
authority. The 'crane' package supplements the functionality of the
'gtsummary' package for creating these often highly bespoke tables in
the pharmaceutical industry.
Author: Daniel D. Sjoberg [aut, cre] ,
Emily de la Rua [aut] ,
Davide Garolini [aut],
Abinaya Yogasekaram [aut],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between crane versions 0.2.0 dated 2025-08-29 and 0.3.0 dated 2025-12-06
DESCRIPTION | 10 MD5 | 104 +++++----- NAMESPACE | 8 NEWS.md | 22 ++ R/add_difference_row.R |only R/add_hierarchical_count_row.R | 2 R/import-standalone-check_pkg_installed.R | 95 +++------ R/import-standalone-cli_call_env.R | 7 R/label_roche.R | 66 +++++- R/reexport.R | 4 R/tbl_baseline_chg.R | 42 ++-- R/tbl_hierarchical_rate_and_count.R | 22 +- R/tbl_listing.R | 8 R/tbl_null_report.R |only R/tbl_roche_summary.R | 17 + R/tbl_shift.R | 7 R/tbl_survfit_quantiles.R | 12 - R/tbl_survfit_times.R | 17 + R/theme_gtsummary_roche.R | 9 R/utils.R | 46 ++++ README.md | 17 + inst/WORDLIST | 1 man/figures/README-tbl_print_simple-1.png |binary man/label_roche.Rd | 40 +++ man/reexports.Rd | 4 man/tbl_baseline_chg.Rd | 4 man/tbl_hierarchical_rate_and_count.Rd | 10 man/tbl_hierarchical_rate_by_grade.Rd | 2 man/tbl_listing.Rd | 2 man/tbl_null_report.Rd |only man/tbl_roche_summary.Rd | 3 man/tbl_shift.Rd | 6 man/tbl_survfit_quantiles.Rd | 8 man/tbl_survfit_times.Rd | 64 +++++- man/theme_gtsummary_roche.Rd | 1 tests/testthat/_snaps/add_difference_row.md |only tests/testthat/_snaps/tbl_baseline_chg.md | 156 +++++++-------- tests/testthat/_snaps/tbl_hierarchical_rate_and_count.md | 2 tests/testthat/_snaps/tbl_listing.md | 61 +++-- tests/testthat/_snaps/tbl_roche_summary.md | 23 ++ tests/testthat/_snaps/tbl_shift.md | 98 ++++----- tests/testthat/_snaps/tbl_survfit_quantiles.md | 3 tests/testthat/_snaps/tbl_survfit_times.md | 28 +- tests/testthat/_snaps/theme_gtsummary_roche.md | 13 - tests/testthat/test-add_difference_row.R |only tests/testthat/test-label_roche.R | 14 + tests/testthat/test-tbl_baseline_chg.R | 16 + tests/testthat/test-tbl_hierarchical_rate_and_count.R | 11 - tests/testthat/test-tbl_hierarchical_rate_by_grade.R | 2 tests/testthat/test-tbl_listing.R | 26 +- tests/testthat/test-tbl_null_report.R |only tests/testthat/test-tbl_roche_summary.R | 19 + tests/testthat/test-tbl_shift.R | 101 +++++---- tests/testthat/test-tbl_survfit_quantiles.R | 4 tests/testthat/test-tbl_survfit_times.R | 2 tests/testthat/test-theme_gtsummary_roche.R | 5 56 files changed, 794 insertions(+), 450 deletions(-)
Title: Graphical Web-Framework for Data Manipulation and Visualization
Description: A framework for data manipulation and visualization using a
web-based point and click user interface where analysis pipelines are decomposed into re-usable and parameterizable blocks.
Author: Nicolas Bennett [aut, cre],
David Granjon [aut],
Christoph Sax [aut],
Karma Tarap [ctb],
John Coene [ctb],
Bristol Myers Squibb [fnd]
Maintainer: Nicolas Bennett <nicolas@cynkra.com>
Diff between blockr.core versions 0.1.0 dated 2025-05-20 and 0.1.1 dated 2025-12-06
blockr.core-0.1.0/blockr.core/R/aaa.R |only blockr.core-0.1.0/blockr.core/R/pkg.R |only blockr.core-0.1.0/blockr.core/R/plugin-serialize.R |only blockr.core-0.1.0/blockr.core/R/registry.R |only blockr.core-0.1.0/blockr.core/R/utils-json.R |only blockr.core-0.1.0/blockr.core/R/zzz.R |only blockr.core-0.1.0/blockr.core/man/figures |only blockr.core-0.1.0/blockr.core/tests/testthat/_snaps/serve |only blockr.core-0.1.0/blockr.core/tests/testthat/test-json.R |only blockr.core-0.1.0/blockr.core/tests/testthat/test-plugin-serialize.R |only blockr.core-0.1.0/blockr.core/tests/testthat/test-registry.R |only blockr.core-0.1.0/blockr.core/tests/testthat/test-serve.R |only blockr.core-0.1.1/blockr.core/DESCRIPTION | 32 blockr.core-0.1.1/blockr.core/MD5 | 278 +-- blockr.core-0.1.1/blockr.core/NAMESPACE | 202 ++ blockr.core-0.1.1/blockr.core/NEWS.md | 34 blockr.core-0.1.1/blockr.core/R/block-class.R | 234 -- blockr.core-0.1.1/blockr.core/R/block-registry.R |only blockr.core-0.1.1/blockr.core/R/block-server.R | 388 ++-- blockr.core-0.1.1/blockr.core/R/block-ui.R | 2 blockr.core-0.1.1/blockr.core/R/blocks-class.R | 17 blockr.core-0.1.1/blockr.core/R/board-class.R | 188 +- blockr.core-0.1.1/blockr.core/R/board-option.R |only blockr.core-0.1.1/blockr.core/R/board-options.R | 520 +++--- blockr.core-0.1.1/blockr.core/R/board-plugins.R | 121 + blockr.core-0.1.1/blockr.core/R/board-server.R | 809 ++++++---- blockr.core-0.1.1/blockr.core/R/board-ui.R | 133 - 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blockr.core-0.1.1/blockr.core/inst/doc/create-block.R | 2 blockr.core-0.1.1/blockr.core/inst/doc/create-block.html | 182 +- blockr.core-0.1.1/blockr.core/inst/doc/create-block.qmd | 2 blockr.core-0.1.1/blockr.core/inst/doc/extend-blockr.R | 20 blockr.core-0.1.1/blockr.core/inst/doc/extend-blockr.html | 254 ++- blockr.core-0.1.1/blockr.core/inst/doc/extend-blockr.qmd | 22 blockr.core-0.1.1/blockr.core/inst/doc/get-started.html | 180 +- blockr.core-0.1.1/blockr.core/inst/doc/testing-blocks.html | 180 +- blockr.core-0.1.1/blockr.core/man/assertions.Rd |only blockr.core-0.1.1/blockr.core/man/block_server.Rd | 15 blockr.core-0.1.1/blockr.core/man/blockr_abort.Rd |only blockr.core-0.1.1/blockr.core/man/blockr_option.Rd | 5 blockr.core-0.1.1/blockr.core/man/blockr_ser.Rd | 40 blockr.core-0.1.1/blockr.core/man/board_blocks.Rd | 58 blockr.core-0.1.1/blockr.core/man/board_server.Rd | 16 blockr.core-0.1.1/blockr.core/man/board_ui.Rd | 44 blockr.core-0.1.1/blockr.core/man/chr_ply.Rd |only blockr.core-0.1.1/blockr.core/man/edit_block.Rd | 8 blockr.core-0.1.1/blockr.core/man/export_code.Rd |only blockr.core-0.1.1/blockr.core/man/generate_code.Rd | 2 blockr.core-0.1.1/blockr.core/man/get_session.Rd |only blockr.core-0.1.1/blockr.core/man/new_block.Rd | 13 blockr.core-0.1.1/blockr.core/man/new_board.Rd | 6 blockr.core-0.1.1/blockr.core/man/new_board_options.Rd | 227 ++ blockr.core-0.1.1/blockr.core/man/new_file_block.Rd | 8 blockr.core-0.1.1/blockr.core/man/new_link.Rd | 14 blockr.core-0.1.1/blockr.core/man/new_plugin.Rd | 28 blockr.core-0.1.1/blockr.core/man/new_stack.Rd | 14 blockr.core-0.1.1/blockr.core/man/new_text_block.Rd |only blockr.core-0.1.1/blockr.core/man/new_transform_block.Rd | 20 blockr.core-0.1.1/blockr.core/man/notify_user.Rd | 5 blockr.core-0.1.1/blockr.core/man/preserve_board.Rd | 18 blockr.core-0.1.1/blockr.core/man/rand_names.Rd | 64 blockr.core-0.1.1/blockr.core/man/register_block.Rd | 37 blockr.core-0.1.1/blockr.core/man/serve.Rd | 25 blockr.core-0.1.1/blockr.core/man/set_names.Rd |only blockr.core-0.1.1/blockr.core/man/stack_ui.Rd | 42 blockr.core-0.1.1/blockr.core/man/testing.Rd |only blockr.core-0.1.1/blockr.core/man/write_log.Rd | 62 blockr.core-0.1.1/blockr.core/tests/testthat/_snaps/block-class.md | 4 blockr.core-0.1.1/blockr.core/tests/testthat/_snaps/blocks-class.md | 4 blockr.core-0.1.1/blockr.core/tests/testthat/_snaps/board-class.md | 57 blockr.core-0.1.1/blockr.core/tests/testthat/_snaps/board-option.md |only blockr.core-0.1.1/blockr.core/tests/testthat/_snaps/utils-serve |only blockr.core-0.1.1/blockr.core/tests/testthat/helpers.R | 58 blockr.core-0.1.1/blockr.core/tests/testthat/setup.R |only blockr.core-0.1.1/blockr.core/tests/testthat/test-block-class.R | 9 blockr.core-0.1.1/blockr.core/tests/testthat/test-block-registry.R |only blockr.core-0.1.1/blockr.core/tests/testthat/test-block-server.R | 212 ++ blockr.core-0.1.1/blockr.core/tests/testthat/test-board-class.R | 109 + blockr.core-0.1.1/blockr.core/tests/testthat/test-board-option.R |only blockr.core-0.1.1/blockr.core/tests/testthat/test-board-options.R |only blockr.core-0.1.1/blockr.core/tests/testthat/test-board-plugins.R | 11 blockr.core-0.1.1/blockr.core/tests/testthat/test-board-server.R | 276 +++ blockr.core-0.1.1/blockr.core/tests/testthat/test-file-browser.R | 15 blockr.core-0.1.1/blockr.core/tests/testthat/test-plot-scatter.R | 4 blockr.core-0.1.1/blockr.core/tests/testthat/test-plugin-block.R | 53 blockr.core-0.1.1/blockr.core/tests/testthat/test-plugin-blocks.R | 16 blockr.core-0.1.1/blockr.core/tests/testthat/test-plugin-code.R | 32 blockr.core-0.1.1/blockr.core/tests/testthat/test-plugin-links.R | 46 blockr.core-0.1.1/blockr.core/tests/testthat/test-plugin-notification.R | 86 - 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Title: Biostatistics and Clinical Data Analysis
Description: Biostatistical and clinical data analysis, including descriptive
statistics, exploratory data analysis, sample size and power calculations,
statistical inference, and data visualization. Normality tests are
implemented following Mishra et al. (2019) <doi:10.4103/aca.ACA_157_18>,
omnibus test procedures are based on Blanca et al. (2017)
<doi:10.3758/s13428-017-0918-2> and Field et al. (2012, ISBN:9781446200469),
while sample size and power calculation methods follow Chow et al. (2017)
<doi:10.1201/9781315183084>.
Author: Sebastian Quirarte-Justo [aut, cre] ,
Angela Carolina Montano-Ruiz [aut] ,
Jose Maria Torres-Arellano [aut] ,
Laboratorios Sophia S.A. de C.V. [cph, fnd]
Maintainer: Sebastian Quirarte-Justo <sebastian.quirarte@sophia.com.mx>
Diff between biostats versions 1.0.0 dated 2025-11-13 and 1.1.0 dated 2025-12-06
DESCRIPTION | 8 +++--- MD5 | 24 +++++++++--------- NAMESPACE | 2 - NEWS.md | 18 +++++++++++++ R/normality.R | 27 +++++++++++++------- R/plot_bar.R | 8 ++++++ R/summary_table.R | 7 +++-- R/util-summary_table.R | 4 +-- README.md | 39 +++++++++++++++--------------- man/figures/README-unnamed-chunk-24-2.png |binary man/normality.Rd | 10 ++++++- man/summary_table.Rd | 2 - tests/testthat/test-normality.R | 2 - 13 files changed, 98 insertions(+), 53 deletions(-)
Title: Dynamic Model of Ammonia Emission from Field-Applied Manure
Description: An implementation of the ALFAM2 dynamic emission model for ammonia volatilization from field-applied animal slurry (manure with dry matter below about 15%). The model can be used to predict cumulative emission and emission rate of ammonia following field application of slurry. Predictions may be useful for emission inventory calculations, fertilizer management, assessment of mitigation strategies, or research aimed at understanding ammonia emission. Default parameter sets include effects of application method, slurry composition, and weather. The model structure is based on a simplified representation of the physical-chemical slurry-soil-atmosphere system. More information is available via citation("ALFAM2").
Author: Sasha D. Hafner [aut, cre] ,
Christoph Haeni [aut] ,
Roland Fuss [aut] ,
Frederik Dalby [aut] ,
Johanna Pedersen [ctb] ,
Valdemar Petersen [ctb]
Maintainer: Sasha D. Hafner <sasha.hafner@bce.au.dk>
Diff between ALFAM2 versions 4.2 dated 2024-11-08 and 4.2.14 dated 2025-12-06
DESCRIPTION | 21 +++--- MD5 | 32 +++++---- NAMESPACE | 2 NEWS.md | 10 ++ R/aggregate2.R |only R/alfam2.R | 24 +++---- R/alfami.R |only build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 5 - inst/doc/ALFAM2-start.R | 150 ++++++++++++++++++++++---------------------- inst/doc/ALFAM2-start.Rmd | 14 +--- inst/doc/ALFAM2-start.html | 76 +++++++++++----------- inst/tinytest/test_alfam2.R | 5 + man/alfam2.Rd | 16 ++-- man/alfam2pars.Rd | 10 +- man/alfami.Rd |only vignettes/ALFAM2-start.Rmd | 14 +--- vignettes/dev |only 19 files changed, 199 insertions(+), 180 deletions(-)
Title: A Two-Stage Estimation Approach to Cox Regression Using M-Spline
Function
Description: Implements a two-stage estimation approach for Cox
regression using five-parameter M-spline functions to model the baseline hazard. It allows
for flexible hazard shapes and model selection based on log-likelihood criteria as described in
Teranishi et al.(2025).
In addition, the package provides functions for constructing and evaluating B-spline copulas
based on five M-spline or I-spline basis functions, allowing users to flexibly model and
compute bivariate dependence structures. Both the copula function and its density can be evaluated.
Furthermore, the package supports computation of dependence measures such as Kendall's tau and
Spearman's rho, derived analytically from the copula parameters.
Author: Ren Teranishi [aut, cre]
Maintainer: Ren Teranishi <ren.teranishi1227@gmail.com>
Diff between splineCox versions 0.0.5 dated 2025-07-10 and 0.0.7 dated 2025-12-06
DESCRIPTION | 10 +- MD5 | 24 ++--- NAMESPACE | 8 + NEWS.md | 9 + R/splineCoxreg1.R | 21 ++-- R/splineCoxreg2.R | 23 ++-- R/splinecopula.R | 124 +++++++++++++++----------- R/splinecopulasim.R |only inst/WORDLIST | 7 + inst/doc/splineCox-introduction.html | 13 ++ man/spline.copula.Rd | 105 +++++++++++++--------- man/spline.copula.simu.Rd |only man/splineCox.reg1.Rd | 163 ++++++++++++++++++---------------- man/splineCox.reg2.Rd | 165 +++++++++++++++++------------------ 14 files changed, 380 insertions(+), 292 deletions(-)
Title: Load Configuration Values
Description: A simple approach to configuring R projects with different
parameter values. Configurations are specified using a reduced subset of base
R and parsed accordingly.
Author: Tim Taylor [aut, cre, cph]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between ronfig versions 0.0.6 dated 2025-11-21 and 0.0.7 dated 2025-12-06
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/load_config.R | 2 +- tests/testthat/test-load_config.R | 30 ++++++++++++++++++++++++++++++ 5 files changed, 42 insertions(+), 8 deletions(-)
Title: Gradient-Based Recognition of Spatial Patterns in Environmental
Data
Description: Provides algorithms for detection of spatial patterns from oceanographic data using image processing methods based on Gradient Recognition.
Author: Wencheng Lau-Medrano [aut, cre]
Maintainer: Wencheng Lau-Medrano <luis.laum@gmail.com>
Diff between grec versions 1.6.2 dated 2025-09-04 and 1.6.3 dated 2025-12-06
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 2 +- NEWS.md | 3 +++ R/grec-package.R | 2 +- build/partial.rdb |binary 6 files changed, 15 insertions(+), 12 deletions(-)
Title: Add Uncertainty to Data Visualisations
Description: A 'ggplot2' extension for visualising uncertainty with the goal
of signal suppression. Usually, uncertainty visualisation focuses on
expressing uncertainty as a distribution or probability, whereas
'ggdibbler' differentiates itself by viewing an uncertainty
visualisation as an adjustment to an existing graphic that
incorporates the inherent uncertainty in the estimates. You provide
the code for an existing plot, but replace any of the variables with a
vector of distributions, and it will convert the visualisation into
it's signal suppression counterpart.
Author: Harriet Mason [aut, cre] ,
Dianne Cook [aut, ths] ,
Sarah Goodwin [aut, ths] ,
Susan VanderPlas [aut, ths]
Maintainer: Harriet Mason <harriet.m.mason@gmail.com>
Diff between ggdibbler versions 0.1.0 dated 2025-07-31 and 0.6.1 dated 2025-12-06
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ggdibbler-0.1.0/ggdibbler/inst/vsup.R |only ggdibbler-0.1.0/ggdibbler/tests/testthat/_snaps/geom_sf_sample |only ggdibbler-0.1.0/ggdibbler/tests/testthat/_snaps/stat_sample |only ggdibbler-0.1.0/ggdibbler/tests/testthat/test-geom_sf_sample.R |only ggdibbler-0.1.0/ggdibbler/tests/testthat/test-stat_sample.R |only ggdibbler-0.1.0/ggdibbler/vignettes/ggdibbler-vignette.Rmd |only ggdibbler-0.6.1/ggdibbler/DESCRIPTION | 33 ggdibbler-0.6.1/ggdibbler/MD5 | 380 +++++++++- ggdibbler-0.6.1/ggdibbler/NAMESPACE | 223 +++++ ggdibbler-0.6.1/ggdibbler/NEWS.md | 121 +++ ggdibbler-0.6.1/ggdibbler/R/data.R | 154 ++++ ggdibbler-0.6.1/ggdibbler/R/geom-abline-sample.R |only ggdibbler-0.6.1/ggdibbler/R/geom-bar-sample.R |only ggdibbler-0.6.1/ggdibbler/R/geom-bin2d-sample.R |only ggdibbler-0.6.1/ggdibbler/R/geom-boxplot-sample.R |only ggdibbler-0.6.1/ggdibbler/R/geom-col-sample.R |only ggdibbler-0.6.1/ggdibbler/R/geom-contour-sample.R |only ggdibbler-0.6.1/ggdibbler/R/geom-count-sample.R |only 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ggdibbler-0.6.1/ggdibbler/vignettes/A_how-to-guide.Rmd |only ggdibbler-0.6.1/ggdibbler/vignettes/B_ggdibbler-philosophy.Rmd |only ggdibbler-0.6.1/ggdibbler/vignettes/C_random-plots.Rmd |only ggdibbler-0.6.1/ggdibbler/vignettes/D_extender-info.Rmd |only 312 files changed, 880 insertions(+), 96 deletions(-)
Title: Distributed Laplace Factor Model
Description: Distributed estimation method is based on a Laplace factor model to solve the estimates of load and specific variance. The philosophy of the package is described in Guangbao Guo. (2022). <doi:10.1007/s00180-022-01270-z>.
Author: Guangbao Guo [aut, cre],
Siqi Liu [aut]
Maintainer: Guangbao Guo <ggb11111111@163.com>
Diff between DLFM versions 0.1.1 dated 2025-11-14 and 0.1.4 dated 2025-12-06
DESCRIPTION | 9 -- MD5 | 14 ++- NAMESPACE | 4 R/DSAPC.R |only R/Dfactor.tests.R |only R/Ftest.R | 209 ++++++++++++++++++++++++++++++++++++++++++++++----- R/SAPC.R |only man/DSAPC.Rd |only man/Dfactor.tests.Rd |only man/Ftest.Rd | 18 +++- man/SAPC.Rd |only 11 files changed, 222 insertions(+), 32 deletions(-)
Title: Stratigraphic Paleobiology Modeling Pipelines
Description: The fossil record is a joint expression of ecological, taphonomic,
evolutionary, and stratigraphic processes (Holland and Patzkowsky, 2012, ISBN:978-0226649382).
This package allowing to simulate biological processes in the time domain
(e.g., trait evolution, fossil abundance, phylogenetic trees), and examine how their expression
in the rock record (stratigraphic domain) is influenced based on
age-depth models, ecological niche models, and taphonomic effects.
Functions simulating common processes used in modeling trait evolution, biostratigraphy or
event type data such as first/last occurrences are provided and can be used
standalone or as part of a pipeline. The package comes with example
data sets and tutorials in several vignettes, which can be used as a
template to set up one's own simulation.
Author: Niklas Hohmann [aut, cre]
Maintainer: Niklas Hohmann <N.H.Hohmann@uu.nl>
Diff between StratPal versions 0.7.0 dated 2025-11-24 and 0.7.1 dated 2025-12-06
DESCRIPTION | 8 +-- MD5 | 77 ++++++++++++++++++------------- NAMESPACE | 5 ++ NEWS.md | 14 +++++ R/apply_niche.R | 9 +++ R/apply_taphonomy.R | 18 ++++++- R/as_char_mat.R |only R/is_char_mat.R |only R/scenarioA.R | 11 ++-- R/strat_filter.R |only build/vignette.rds |binary data/scenarioA.rda |binary inst/WORDLIST | 12 ++++ inst/doc/FossilSim_integration.html | 17 +++--- inst/doc/StratPal.Rmd | 6 +- inst/doc/StratPal.html | 37 ++++++++------ inst/doc/StratPal_docs.Rmd | 27 ++++++++++ inst/doc/StratPal_docs.html | 33 +++++++++++++ inst/doc/advanced_functionality.Rmd | 4 + inst/doc/advanced_functionality.html | 11 +++- inst/doc/event_data.R | 2 inst/doc/event_data.Rmd | 6 -- inst/doc/event_data.html | 40 ++++++---------- inst/doc/paleoTS_functionality.html | 12 ++-- inst/doc/phenotypic_evolution.html | 10 ++-- inst/doc/stratigraphic_architecture.R |only inst/doc/stratigraphic_architecture.Rmd |only inst/doc/stratigraphic_architecture.html |only man/apply_niche.Rd | 3 - man/apply_taphonomy.Rd | 4 + man/as_char_mat.Rd |only man/is_char_mat.Rd |only man/scenarioA.Rd | 13 ++--- man/strat_filter.Rd |only tests/testthat/test_apply_niche.R | 14 +++++ tests/testthat/test_apply_taphonomy.R | 23 +++++++++ tests/testthat/test_as_char_mat.R |only tests/testthat/test_is_char_mat.R |only tests/testthat/test_strat_filter.R |only vignettes/StratPal.Rmd | 6 +- vignettes/StratPal_docs.Rmd | 27 ++++++++++ vignettes/advanced_functionality.Rmd | 4 + vignettes/event_data.Rmd | 6 -- vignettes/platform_production_curve.png |only vignettes/platform_profile.png |only vignettes/platform_summary.png |only vignettes/platform_wheeler_diagram.png |only vignettes/stratigraphic_architecture.Rmd |only 48 files changed, 331 insertions(+), 128 deletions(-)
Title: File Sharing Shiny Module
Description: Shiny module for easily sharing files between users. Admin can add, remove, edit and download file.
User can only download file. It's also possible to manage files using R functions directly.
Author: Benoit Thieurmel [aut, cre],
Thibaut Dubois [aut],
Jeremy Boussaguet [ctb]
Maintainer: Benoit Thieurmel <bthieurmel@gmail.com>
Diff between shinydrive versions 0.1.3 dated 2022-09-29 and 0.1.5 dated 2025-12-06
shinydrive-0.1.3/shinydrive/inst/demo_app/rsconnect |only shinydrive-0.1.5/shinydrive/DESCRIPTION | 16 shinydrive-0.1.5/shinydrive/MD5 | 29 shinydrive-0.1.5/shinydrive/NAMESPACE | 5 shinydrive-0.1.5/shinydrive/NEWS.md | 8 shinydrive-0.1.5/shinydrive/R/shiny_module.R | 759 ++++++++--- shinydrive-0.1.5/shinydrive/R/utils.R | 20 shinydrive-0.1.5/shinydrive/R/yaml_tools.R | 750 ++++++++++ shinydrive-0.1.5/shinydrive/README.md | 3 shinydrive-0.1.5/shinydrive/inst/demo_app/ui.R | 10 shinydrive-0.1.5/shinydrive/inst/demo_app/www/css/custom.css | 10 shinydrive-0.1.5/shinydrive/inst/translate/translate.csv | 15 shinydrive-0.1.5/shinydrive/man/combine_yaml_recursive.Rd |only shinydrive-0.1.5/shinydrive/man/delete_config.Rd |only shinydrive-0.1.5/shinydrive/man/delete_old_config.Rd |only shinydrive-0.1.5/shinydrive/man/file_manager.Rd | 246 +-- shinydrive-0.1.5/shinydrive/man/init_config.Rd |only shinydrive-0.1.5/shinydrive/man/shiny_drive_module.Rd | 166 +- 18 files changed, 1624 insertions(+), 413 deletions(-)
Title: Likelihood-Based Confidence Interval in Structural Equation
Models
Description: Forms likelihood-based confidence intervals
(LBCIs) for parameters in structural equation modeling,
introduced in Cheung and Pesigan (2023)
<doi:10.1080/10705511.2023.2183860>. Currently
implements the algorithm illustrated by Pek and Wu
(2018) <doi:10.1037/met0000163>, and supports the robust
LBCI proposed by Falk (2018)
<doi:10.1080/10705511.2017.1367254>.
Author: Shu Fai Cheung [aut, cre] ,
Ivan Jacob Agaloos Pesigan [ctb]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between semlbci versions 0.11.3 dated 2025-01-25 and 0.11.5 dated 2025-12-06
DESCRIPTION | 15 MD5 | 378 +++++----- NEWS.md | 16 R/loglike_at.R | 4 R/loglike_at_user.R | 4 R/semlbci.R | 2 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary tests/testthat/test-check_sem_out.R | 3 tests/testthat/test-ci_bound_wn_i_int_comp_mg_std_cfa.R | 2 tests/testthat/test-ci_bound_wn_i_int_comp_mg_std_cfa_user_eq.R | 2 tests/testthat/test-ci_bound_wn_i_int_comp_mg_std_pa.R | 2 tests/testthat/test-ci_bound_wn_i_int_comp_mg_std_pa_user_eq.R | 2 tests/testthat/test-ci_bound_wn_i_int_comp_mg_std_sem.R | 2 tests/testthat/test-ci_bound_wn_i_int_comp_mg_std_sem_user_eq.R | 2 tests/testthat/test-ci_bound_wn_i_int_comp_rb_std_cfa.R | 2 tests/testthat/test-ci_bound_wn_i_int_comp_rb_std_cfa_user_eq.R | 2 tests/testthat/test-ci_bound_wn_i_int_comp_rb_std_pa.R | 2 tests/testthat/test-ci_bound_wn_i_int_comp_rb_std_pa_user_eq.R | 2 tests/testthat/test-ci_bound_wn_i_int_comp_rb_std_sem.R | 2 tests/testthat/test-ci_bound_wn_i_int_comp_rb_std_sem_user_eq.R | 2 tests/testthat/test-ci_bound_wn_i_int_comp_std_cfa.R | 2 tests/testthat/test-ci_bound_wn_i_int_comp_std_cfa_user_eq.R | 2 tests/testthat/test-ci_bound_wn_i_int_comp_std_pa.R | 2 tests/testthat/test-ci_bound_wn_i_int_comp_std_pa_user_eq.R | 2 tests/testthat/test-ci_bound_wn_i_int_comp_std_sem.R | 2 tests/testthat/test-ci_bound_wn_i_int_comp_std_sem_user_eq.R | 2 tests/testthat/test-ci_bound_wn_i_mg_rb_std_cfa.R | 7 tests/testthat/test-ci_bound_wn_i_mg_rb_std_cfa_eq.R | 14 tests/testthat/test-ci_bound_wn_i_mg_rb_std_cfa_user.R | 12 tests/testthat/test-ci_bound_wn_i_mg_rb_std_cfa_user_eq.R | 14 tests/testthat/test-ci_bound_wn_i_mg_rb_std_pa.R | 7 tests/testthat/test-ci_bound_wn_i_mg_rb_std_pa_eq.R | 12 tests/testthat/test-ci_bound_wn_i_mg_rb_std_pa_user.R | 14 tests/testthat/test-ci_bound_wn_i_mg_rb_std_pa_user_eq.R | 26 tests/testthat/test-ci_bound_wn_i_mg_rb_std_sem.R | 7 tests/testthat/test-ci_bound_wn_i_mg_rb_std_sem_eq.R | 7 tests/testthat/test-ci_bound_wn_i_mg_rb_std_sem_user.R | 7 tests/testthat/test-ci_bound_wn_i_mg_rb_std_sem_user_eq.R | 7 tests/testthat/test-ci_bound_wn_i_mg_rb_ustd_cfa.R | 14 tests/testthat/test-ci_bound_wn_i_mg_rb_ustd_cfa_eq.R | 14 tests/testthat/test-ci_bound_wn_i_mg_rb_ustd_cfa_user.R | 14 tests/testthat/test-ci_bound_wn_i_mg_rb_ustd_cfa_user_eq.R | 7 tests/testthat/test-ci_bound_wn_i_mg_rb_ustd_pa.R | 26 tests/testthat/test-ci_bound_wn_i_mg_rb_ustd_pa_eq.R | 14 tests/testthat/test-ci_bound_wn_i_mg_rb_ustd_pa_user.R | 14 tests/testthat/test-ci_bound_wn_i_mg_rb_ustd_pa_user_eq.R | 14 tests/testthat/test-ci_bound_wn_i_mg_rb_ustd_sem.R | 14 tests/testthat/test-ci_bound_wn_i_mg_rb_ustd_sem_eq.R | 14 tests/testthat/test-ci_bound_wn_i_mg_rb_ustd_sem_user.R | 7 tests/testthat/test-ci_bound_wn_i_mg_rb_ustd_sem_user_eq.R | 7 tests/testthat/test-ci_bound_wn_i_mg_std_cfa.R | 14 tests/testthat/test-ci_bound_wn_i_mg_std_cfa_eq.R | 14 tests/testthat/test-ci_bound_wn_i_mg_std_cfa_user.R | 14 tests/testthat/test-ci_bound_wn_i_mg_std_cfa_user_eq.R | 14 tests/testthat/test-ci_bound_wn_i_mg_std_pa.R | 14 tests/testthat/test-ci_bound_wn_i_mg_std_pa_eq.R | 14 tests/testthat/test-ci_bound_wn_i_mg_std_pa_user.R | 14 tests/testthat/test-ci_bound_wn_i_mg_std_pa_user_eq.R | 14 tests/testthat/test-ci_bound_wn_i_mg_std_sem.R | 14 tests/testthat/test-ci_bound_wn_i_mg_std_sem_eq.R | 14 tests/testthat/test-ci_bound_wn_i_mg_std_sem_user.R | 7 tests/testthat/test-ci_bound_wn_i_mg_std_sem_user_eq.R | 14 tests/testthat/test-ci_bound_wn_i_mg_ustd_cfa.R | 7 tests/testthat/test-ci_bound_wn_i_mg_ustd_cfa_eq.R | 7 tests/testthat/test-ci_bound_wn_i_mg_ustd_cfa_user.R | 7 tests/testthat/test-ci_bound_wn_i_mg_ustd_cfa_user_eq.R | 7 tests/testthat/test-ci_bound_wn_i_mg_ustd_pa.R | 7 tests/testthat/test-ci_bound_wn_i_mg_ustd_pa_eq.R | 14 tests/testthat/test-ci_bound_wn_i_mg_ustd_pa_user.R | 14 tests/testthat/test-ci_bound_wn_i_mg_ustd_pa_user_eq.R | 14 tests/testthat/test-ci_bound_wn_i_mg_ustd_sem.R | 5 tests/testthat/test-ci_bound_wn_i_mg_ustd_sem_eq.R | 7 tests/testthat/test-ci_bound_wn_i_mg_ustd_sem_user.R | 7 tests/testthat/test-ci_bound_wn_i_mg_ustd_sem_user_eq.R | 7 tests/testthat/test-ci_bound_wn_i_rb_std_cfa.R | 7 tests/testthat/test-ci_bound_wn_i_rb_std_cfa_eq.R | 7 tests/testthat/test-ci_bound_wn_i_rb_std_cfa_user.R | 7 tests/testthat/test-ci_bound_wn_i_rb_std_cfa_user_eq.R | 14 tests/testthat/test-ci_bound_wn_i_rb_std_pa.R | 7 tests/testthat/test-ci_bound_wn_i_rb_std_pa_eq.R | 14 tests/testthat/test-ci_bound_wn_i_rb_std_pa_user.R | 7 tests/testthat/test-ci_bound_wn_i_rb_std_pa_user_eq.R | 7 tests/testthat/test-ci_bound_wn_i_rb_std_sem.R | 7 tests/testthat/test-ci_bound_wn_i_rb_std_sem_eq.R | 7 tests/testthat/test-ci_bound_wn_i_rb_std_sem_user.R | 7 tests/testthat/test-ci_bound_wn_i_rb_std_sem_user_eq.R | 7 tests/testthat/test-ci_bound_wn_i_rb_ustd_cfa.R | 7 tests/testthat/test-ci_bound_wn_i_rb_ustd_cfa_eq.R | 7 tests/testthat/test-ci_bound_wn_i_rb_ustd_cfa_user.R | 7 tests/testthat/test-ci_bound_wn_i_rb_ustd_cfa_user_eq.R | 7 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tests/testthat/test-ci_i_one_ustd_pa_ur.R | 2 tests/testthat/test-confint_semlbci.R | 2 tests/testthat/test-extra_arguments.R | 20 tests/testthat/test-gen_unique_name.R | 2 tests/testthat/test-get_i_from_lor.R | 8 tests/testthat/test-get_lhs_op_rhs.R | 2 tests/testthat/test-get_names_from_ptable.R | 6 tests/testthat/test-i_to_names.R | 2 tests/testthat/test-lav_mod_to_ram.R | 24 tests/testthat/test-pars_op.R | 2 tests/testthat/test-plot_likelihood.R | 2 tests/testthat/test-plot_likelihood_ur.R | 2 tests/testthat/test-ram_to_lav_mod.R | 8 tests/testthat/test-remove_intercepts.R | 2 tests/testthat/test-remove_variances.R | 2 tests/testthat/test-scaling_factor3_mg_rb_std_sem_user_eq.R | 2 tests/testthat/test-scaling_factor3_mg_rb_ustd_sem_user_eq.R | 2 tests/testthat/test-scaling_factor3_mg_wn_sem_std.R | 4 tests/testthat/test-scaling_factor3_mg_wn_sem_ustd.R | 4 tests/testthat/test-scaling_factor3_std_sem_user_eq.R | 2 tests/testthat/test-scaling_factor3_ustd_sem_user_eq.R | 2 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changed, 1015 insertions(+), 622 deletions(-)
Title: 'DataSHIELD' Client for 'MOLGENIS Armadillo'
Description: 'DataSHIELD' is an infrastructure and series of R packages that
enables the remote and 'non-disclosive' analysis of sensitive research data.
This package is the 'DataSHIELD' interface implementation to analyze data
shared on a 'MOLGENIS Armadillo' server. 'MOLGENIS Armadillo' is a
light-weight 'DataSHIELD' server using a file store and an 'RServe' server.
Author: Mariska Slofstra [aut, cre] ,
Sido Haakma [aut] ,
Tommy de Boer [aut] ,
Fleur Kelpin [aut] ,
MOLGENIS org [cph, fnd]
Maintainer: Mariska Slofstra <m.k.slofstra@umcg.nl>
Diff between DSMolgenisArmadillo versions 3.0.1 dated 2025-09-16 and 3.0.2 dated 2025-12-06
DESCRIPTION | 12 MD5 | 26 - NAMESPACE | 5 NEWS.md | 3 R/ArmadilloConnection.R | 97 ++--- R/ArmadilloDriver.R | 31 - R/ArmadilloOAuth.R | 152 ++++---- R/ArmadilloResult.R | 14 R/utils.R | 21 - tests/testthat/test-ArmadilloConnection.R | 496 ++++++++++++++-------------- tests/testthat/test-ArmadilloDriver.R | 189 ++++++----- tests/testthat/test-ArmadilloOAuth.R | 514 +++++++++++++++--------------- tests/testthat/test-ArmadilloResult.R | 160 +++++---- tests/testthat/test-utils.R | 229 ++++++++----- 14 files changed, 1052 insertions(+), 897 deletions(-)
More information about DSMolgenisArmadillo at CRAN
Permanent link
Title: Layout Manager Widget for R and 'shiny' Apps
Description: Provides R bindings to the 'dockview' 'JavaScript' library <https://dockview.dev/>.
Create fully customizable grid layouts (docks) in seconds to include in interactive R reports with R Markdown or 'Quarto' or
in 'shiny' apps <https://shiny.posit.co/>. In 'shiny' mode, modify docks by dynamically adding, removing or moving panels or
groups of panels from the server function. Choose among 8 stunning themes (dark and light),
serialise the state of a dock to restore it later.
Author: David Granjon [aut, cre],
Nelson Stevens [aut],
Nicolas Bennett [aut],
mathuo [cph],
cynkra GmbH [fnd]
Maintainer: David Granjon <dgranjon@ymail.com>
Diff between dockViewR versions 0.2.0 dated 2025-07-10 and 0.3.0 dated 2025-12-06
dockViewR-0.2.0/dockViewR/R/add_panel.R |only dockViewR-0.2.0/dockViewR/R/move_group.R |only dockViewR-0.2.0/dockViewR/R/move_group2.R |only dockViewR-0.2.0/dockViewR/R/move_panel.R |only dockViewR-0.2.0/dockViewR/R/remove_panel.R |only dockViewR-0.2.0/dockViewR/R/select_panel.R |only dockViewR-0.2.0/dockViewR/inst/examples/replace_panel_content |only dockViewR-0.2.0/dockViewR/man/add_panel.Rd |only dockViewR-0.2.0/dockViewR/man/move_group.Rd |only dockViewR-0.2.0/dockViewR/man/move_group2.Rd |only dockViewR-0.2.0/dockViewR/man/move_panel.Rd |only dockViewR-0.2.0/dockViewR/man/remove_panel.Rd |only dockViewR-0.2.0/dockViewR/man/select_panel.Rd |only dockViewR-0.2.0/dockViewR/tests/testthat/_snaps/add_panel |only dockViewR-0.2.0/dockViewR/tests/testthat/_snaps/add_panel.md |only dockViewR-0.2.0/dockViewR/tests/testthat/_snaps/move_group |only dockViewR-0.2.0/dockViewR/tests/testthat/_snaps/move_group.md |only dockViewR-0.2.0/dockViewR/tests/testthat/_snaps/move_group2 |only 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Title: Discrete Laplace Mixture Inference using the EM Algorithm
Description: Make inference in a mixture of discrete Laplace distributions using the EM algorithm. This can e.g. be used for modelling the distribution of Y chromosomal haplotypes as described in [1, 2] (refer to the URL section).
Author: Mikkel Meyer Andersen [aut, cre],
Poul Svante Eriksen [aut]
Maintainer: Mikkel Meyer Andersen <mikl@math.aau.dk>
Diff between disclapmix versions 1.7.4 dated 2022-06-29 and 1.7.5 dated 2025-12-06
DESCRIPTION | 19 -- MD5 | 55 +++-- NAMESPACE | 4 NEWS | 19 ++ R/RcppExports.R | 4 R/disclapmix-package.R | 3 R/disclapmix.R | 11 - R/disclapmix_adaptive.R | 83 ++++++++- R/disclapmix_robust.R | 35 +++ R/export.R |only R/helper.R | 378 ++++++++++++++++++++++------------------- README.md | 2 build/partial.rdb |only build/vignette.rds |binary inst/doc/adaptive-fitting.R |only inst/doc/adaptive-fitting.Rmd |only inst/doc/adaptive-fitting.html |only inst/doc/introduction.R | 8 inst/doc/introduction.html | 253 ++++++++++++++------------- inst/doc/mixtures.R | 2 inst/doc/mixtures.html | 181 ++++++++++--------- man/disclapmix-package.Rd | 9 man/disclapmix.Rd | 2 man/disclapmix_adaptive.Rd | 21 ++ man/disclapmix_robust.Rd | 13 + man/export_compact_fit.Rd |only man/predict.disclapmixfit.Rd | 9 man/simulate.disclapmixfit.Rd | 5 src/RcppExports.cpp | 15 + src/helper.cpp | 27 ++ tests/testthat/test-adaptive.R |only tests/testthat/test-predict.R |only vignettes/adaptive-fitting.Rmd |only 33 files changed, 714 insertions(+), 444 deletions(-)
Title: Flexible Univariate Count Models Based on Renewal Processes
Description: Flexible univariate count models based on renewal processes. The
models may include covariates and can be specified with familiar formula
syntax as in glm() and package 'flexsurv'. The methodology is described by
Kharrat et all (2019) <doi:10.18637/jss.v090.i13> (included as vignette
'Countr_guide' in the package).
Author: Tarak Kharrat [aut] ,
Georgi N. Boshnakov [aut, cre]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between Countr versions 3.5.8 dated 2024-01-14 and 3.6 dated 2025-12-06
Countr-3.5.8/Countr/R/probpredict.R |only Countr-3.5.8/Countr/inst/auto |only Countr-3.5.8/Countr/man/prob_predict.Rd |only Countr-3.6/Countr/DESCRIPTION | 36 +- Countr-3.6/Countr/MD5 | 102 +++--- Countr-3.6/Countr/NAMESPACE | 20 - Countr-3.6/Countr/NEWS.md | 14 Countr-3.6/Countr/R/Countr-package.R | 16 - Countr-3.6/Countr/R/RcppExports.R | 66 ++++ Countr-3.6/Countr/R/coefnames.R | 5 Countr-3.6/Countr/R/convCount_moments.R | 8 Countr-3.6/Countr/R/convCount_probs.R | 2 Countr-3.6/Countr/R/dBivariateWeibull.R |only Countr-3.6/Countr/R/dWeibull.R | 2 Countr-3.6/Countr/R/dWeibullgamma.R | 2 Countr-3.6/Countr/R/data.R | 2 Countr-3.6/Countr/R/renewal_cstr.R | 19 - Countr-3.6/Countr/R/renewal_methods.R | 13 Countr-3.6/Countr/R/renewal_tools.R | 47 --- Countr-3.6/Countr/README.md | 5 Countr-3.6/Countr/build/partial.rdb |binary Countr-3.6/Countr/build/vignette.rds |binary Countr-3.6/Countr/inst/REFERENCES.bib | 17 - Countr-3.6/Countr/inst/doc/ComputationalPerformance.pdf |binary Countr-3.6/Countr/inst/doc/Countr_guide.pdf |binary Countr-3.6/Countr/inst/doc/ModelSelectionAndComparison.pdf |binary Countr-3.6/Countr/inst/doc/VarianceCovariance.pdf |binary Countr-3.6/Countr/inst/doc/exampleFertility.pdf |binary Countr-3.6/Countr/inst/doc/exampleFootball.pdf |binary Countr-3.6/Countr/inst/include/BivWei_series.h |only Countr-3.6/Countr/inst/include/Biv_utils.h |only Countr-3.6/Countr/inst/include/Countr_RcppExports.h | 84 +++++ Countr-3.6/Countr/inst/include/utils.h | 1 Countr-3.6/Countr/man/Countr-package.Rd | 26 + Countr-3.6/Countr/man/dBivariateWeibullCountFrankCopula.Rd |only Countr-3.6/Countr/man/dCount_allProbs_bi.Rd | 4 Countr-3.6/Countr/man/dCount_conv_bi.Rd | 6 Countr-3.6/Countr/man/dCount_conv_loglik_bi.Rd | 2 Countr-3.6/Countr/man/dCount_dePril_bi.Rd | 3 Countr-3.6/Countr/man/dCount_naive_bi.Rd | 19 - Countr-3.6/Countr/man/dRenewalFrankCopula_user.Rd |only Countr-3.6/Countr/man/dWeibullCount.Rd | 2 Countr-3.6/Countr/man/dWeibullgammaCount.Rd | 2 Countr-3.6/Countr/man/evCount_conv_bi.Rd | 8 Countr-3.6/Countr/man/fertility.Rd | 2 Countr-3.6/Countr/man/getParNames.Rd | 4 Countr-3.6/Countr/man/renewalCoef.Rd | 3 Countr-3.6/Countr/man/renewalCount.Rd | 19 - Countr-3.6/Countr/man/surv.Rd | 6 Countr-3.6/Countr/src/Biv_utils.cpp |only Countr-3.6/Countr/src/RcppExports.cpp | 192 +++++++++++++ Countr-3.6/Countr/src/built_in_distributions.cpp | 2 Countr-3.6/Countr/src/conv_dePril.cpp | 1 Countr-3.6/Countr/src/conv_naive.cpp | 1 Countr-3.6/Countr/src/series_weibull.cpp | 110 +++++++ Countr-3.6/Countr/src/utils.cpp | 9 Countr-3.6/Countr/tests/testthat/test-BivariateWeibull.R |only 57 files changed, 666 insertions(+), 216 deletions(-)
Title: Determining Groups in Multiples Curves
Description: A method for determining groups in multiple
curves with an automatic selection of their number based on k-means or
k-medians algorithms. The selection of the optimal number is provided by
bootstrap methods or other approaches with lower computational cost. The methodology can be applied both in regression and survival framework.
Implemented methods are:
Grouping multiple survival curves described by Villanueva et al. (2018) <doi:10.1002/sim.8016>.
Author: Nora M. Villanueva [aut, cre] ,
Marta Sestelo [aut]
Maintainer: Nora M. Villanueva <nmvillanueva@uvigo.es>
Diff between clustcurv versions 3.0.0 dated 2025-11-14 and 3.0.1 dated 2025-12-06
DESCRIPTION | 8 - MD5 | 8 - NEWS | 4 R/auxfun_surv.R | 1 inst/doc/clustcurv.html | 212 +++++++++++++++++++++++------------------------- 5 files changed, 117 insertions(+), 116 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-11-10 0.7.0
2025-08-29 0.6.1
2025-05-29 0.6.0
2025-01-27 0.5.0
2024-12-09 0.4.0
2024-08-26 0.3.0
2024-07-31 0.2.0
2024-07-02 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-02-28 0.0.1