Title: Tools for Quantitative Risk Management
Description: Functions and data sets for reproducing selected results from
the book "Quantitative Risk Management: Concepts, Techniques and Tools".
Furthermore, new developments and auxiliary functions for Quantitative
Risk Management practice.
Author: Marius Hofert [aut, cre],
Kurt Hornik [aut],
Alexander J. McNeil [aut]
Maintainer: Marius Hofert <mhofert@hku.hk>
Diff between qrmtools versions 0.0-18 dated 2025-09-10 and 0.0-19 dated 2025-12-10
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NAMESPACE | 2 +- R/get_data.R | 23 +++++++++++++---------- inst/NEWS.Rd | 9 +++++++++ inst/doc/ARMA_GARCH_VaR.html | 4 ++-- inst/doc/VaR_bounds.html | 6 +++--- inst/doc/geometric_risk_measures.html | 4 ++-- man/get_data.Rd | 7 +++---- 9 files changed, 46 insertions(+), 35 deletions(-)
Title: Miscellaneous Statistical Functions Used in 'guide-R'
Description: Companion package for the manual
'guide-R : Guide pour l’analyse de données d’enquêtes avec R' available at
<https://larmarange.github.io/guide-R/>. 'guideR' implements miscellaneous
functions introduced in 'guide-R' to facilitate statistical analysis and
manipulation of survey data.
Author: Joseph Larmarange [aut, cre]
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between guideR versions 0.7.0 dated 2025-11-26 and 0.8.0 dated 2025-12-10
DESCRIPTION | 12 MD5 | 59 +- NAMESPACE | 17 NEWS.md | 34 + R/gtsummary_tests.R | 41 ++ R/gtsummary_themes.R | 58 ++ R/mean_sd.R |only R/median_iqr.R |only R/plot_categorical.R |only R/plot_continuous.R |only R/plot_means.R |only R/plot_multiple_answers.R | 9 R/plot_proportions.R | 522 +++++++++++++++++--------- R/proportion.R | 29 - R/safe_pal.R |only R/svyoneway.R |only R/vdiffr-helper.R |only inst/WORDLIST | 6 man/gtsummary_test.Rd | 17 man/gtsummary_themes.Rd | 27 + man/mean_sd.Rd |only man/median_iqr.Rd |only man/plot_categorical.Rd |only man/plot_continuous.Rd |only man/plot_means.Rd |only man/plot_multiple_answers.Rd | 5 man/plot_proportions.Rd | 26 - man/safe_pal.Rd |only man/svyoneway.Rd |only tests/testthat/test-gtsummary-themes.R | 18 tests/testthat/test-mean_sd.R |only tests/testthat/test-median_iqr.R |only tests/testthat/test-observed_vs_theoretical.R | 6 tests/testthat/test-plot_categorical.R |only tests/testthat/test-plot_continuous.R |only tests/testthat/test-plot_inertia_from_tree.R | 5 tests/testthat/test-plot_means.R |only tests/testthat/test-plot_multiple_answers.R | 66 ++- tests/testthat/test-plot_proportions.R | 66 ++- tests/testthat/test-plot_trajectories.R | 29 + tests/testthat/test-svyoneway.R |only 41 files changed, 783 insertions(+), 269 deletions(-)
Title: Functions to Estimate Tree Volume and Phytomass in the Italian
Forest Inventory 2005
Description: Tabacchi et al. (2011) published a very detailed study producing a uniform system of functions to estimate tree volume and
phytomass components (stem, branches, stool). The estimates of the 2005 Italian forest inventory (<https://www.inventarioforestale.org/it/>)
are based on these functions. The study documents the domain of applicability of each function and the equations to quantify estimates
accuracies for individual estimates as well as for aggregated estimates. This package makes the functions available in the R environment.
Version 2 exposes two distinct functions for individual and summary estimates. To facilitate access to the functions, tree species
identification is now based on EPPO species codes (<https://data.eppo.int/>).
Author: Nicola Puletti [aut, cre] ,
Mirko Grotti [aut],
Roberto Scotti [aut]
Maintainer: Nicola Puletti <nicola.puletti@gmail.com>
Diff between ForIT versions 2.5.1 dated 2025-09-22 and 2.5.2 dated 2025-12-10
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 8 +++++++- R/ForIT_DataBase.R | 2 +- R/INFCtabulate.R | 2 +- R/INFCvpe.R | 5 ++--- R/INFCvpeSUM.R | 2 +- R/examples/INFCvpeSUM_e.R | 2 +- man/ForIT_DataBase.Rd | 2 +- man/INFCvpe.Rd | 2 +- man/INFCvpeSUM.Rd | 4 ++-- 11 files changed, 30 insertions(+), 25 deletions(-)
Title: Serialize Model Objects with a Consistent Interface
Description: Typically, models in 'R' exist in memory and can be saved via
regular 'R' serialization. However, some models store information in
locations that cannot be saved using 'R' serialization alone. The goal
of 'bundle' is to provide a common interface to capture this
information, situate it within a portable object, and restore it for
use in new settings.
Author: Julia Silge [aut, cre] ,
Simon Couch [aut],
Qiushi Yan [aut],
Max Kuhn [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Julia Silge <julia.silge@posit.co>
Diff between bundle versions 0.1.2 dated 2024-11-12 and 0.1.3 dated 2025-12-10
bundle-0.1.2/bundle/R/package.R |only bundle-0.1.2/bundle/man/bundle_description.Rd |only bundle-0.1.3/bundle/DESCRIPTION | 30 ++-- bundle-0.1.3/bundle/LICENSE | 2 bundle-0.1.3/bundle/MD5 | 86 ++++++----- bundle-0.1.3/bundle/NAMESPACE | 2 bundle-0.1.3/bundle/NEWS.md | 4 bundle-0.1.3/bundle/R/bundle-package.R |only bundle-0.1.3/bundle/R/bundle_bart.R | 6 bundle-0.1.3/bundle/R/bundle_embed.R | 6 bundle-0.1.3/bundle/R/bundle_keras.R | 19 +- bundle-0.1.3/bundle/R/bundle_parsnip.R | 6 bundle-0.1.3/bundle/R/bundle_stacks.R | 8 - bundle-0.1.3/bundle/R/bundle_torch.R | 19 +- bundle-0.1.3/bundle/R/bundle_workflows.R | 12 - bundle-0.1.3/bundle/R/bundle_xgboost.R | 38 +++-- bundle-0.1.3/bundle/R/utils.R | 12 - bundle-0.1.3/bundle/README.md | 64 +++----- bundle-0.1.3/bundle/build/vignette.rds |binary bundle-0.1.3/bundle/inst/doc/bundle.R | 48 +++--- bundle-0.1.3/bundle/inst/doc/bundle.Rmd | 94 +++++++++---- bundle-0.1.3/bundle/inst/doc/bundle.html | 83 ++++++----- bundle-0.1.3/bundle/man/bundle-package.Rd |only bundle-0.1.3/bundle/man/bundle_bart.Rd | 6 bundle-0.1.3/bundle/man/bundle_caret.Rd | 6 bundle-0.1.3/bundle/man/bundle_embed.Rd | 12 - bundle-0.1.3/bundle/man/bundle_h2o.Rd | 2 bundle-0.1.3/bundle/man/bundle_keras.Rd | 16 +- bundle-0.1.3/bundle/man/bundle_parsnip.Rd | 12 - bundle-0.1.3/bundle/man/bundle_stacks.Rd | 10 - bundle-0.1.3/bundle/man/bundle_torch.Rd | 12 - bundle-0.1.3/bundle/man/bundle_workflows.Rd | 18 +- bundle-0.1.3/bundle/man/bundle_xgboost.Rd | 20 +- bundle-0.1.3/bundle/man/figures/lifecycle-deprecated.svg |only bundle-0.1.3/bundle/man/figures/lifecycle-experimental.svg |only bundle-0.1.3/bundle/man/figures/lifecycle-stable.svg |only bundle-0.1.3/bundle/man/figures/lifecycle-superseded.svg |only bundle-0.1.3/bundle/tests/testthat.R | 4 bundle-0.1.3/bundle/tests/testthat/test_bundle_embed.R | 9 - bundle-0.1.3/bundle/tests/testthat/test_bundle_h2o.R | 25 ++- bundle-0.1.3/bundle/tests/testthat/test_bundle_keras.R | 24 ++- bundle-0.1.3/bundle/tests/testthat/test_bundle_parsnip.R | 6 bundle-0.1.3/bundle/tests/testthat/test_bundle_stacks.R | 8 - bundle-0.1.3/bundle/tests/testthat/test_bundle_torch.R | 24 +-- bundle-0.1.3/bundle/tests/testthat/test_bundle_workflows.R | 24 +-- bundle-0.1.3/bundle/tests/testthat/test_bundle_xgboost.R | 29 +++- bundle-0.1.3/bundle/tests/testthat/test_utils.R | 11 - bundle-0.1.3/bundle/vignettes/bundle.Rmd | 94 +++++++++---- 48 files changed, 536 insertions(+), 375 deletions(-)
Title: D-Vine Quantile Regression
Description: Implements D-vine quantile regression models with
parametric or nonparametric pair-copulas. See
Kraus and Czado (2017) <doi:10.1016/j.csda.2016.12.009> and
Schallhorn et al. (2017) <doi:10.48550/arXiv.1705.08310>.
Author: Thomas Nagler [aut, cre],
Dani Kraus [ctb]
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between vinereg versions 0.11.0 dated 2025-01-11 and 0.12.1 dated 2025-12-10
DESCRIPTION | 10 +++--- MD5 | 22 ++++++------- NEWS.md | 6 +++ R/RcppExports.R | 4 +- R/vinereg.R | 10 +++--- README.md | 30 +++++++++--------- build/vignette.rds |binary inst/doc/abalone-example.html | 33 ++++++++++---------- inst/doc/bike-rental.html | 49 +++++++++++++++---------------- man/figures/README-unnamed-chunk-1-1.png |binary src/RcppExports.cpp | 11 +++--- src/vinereg.cpp | 27 ++++------------- 12 files changed, 99 insertions(+), 103 deletions(-)
Title: Visualise OMOP Results using 'shiny' Applications
Description: Visualise results obtained from analysing data mapped to the
Observational Medical Outcomes Partnership (OMOP) common data model using
'shiny' applications.
Author: Marti Catala [aut, cre] ,
Yuchen Guo [aut] ,
Edward Burn [ctb] ,
Nuria Mercade-Besora [ctb] ,
Elin Rowlands [ctb] ,
Cecilia Campanile [ctb]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between OmopViewer versions 0.5.0 dated 2025-11-16 and 0.6.0 dated 2025-12-10
DESCRIPTION | 23 +++++----- MD5 | 38 ++++++++-------- NEWS.md | 12 +++++ R/appStatic.R | 52 ++++++++++++++--------- R/createServer.R | 8 ++- R/data.R | 4 - R/defaultPanels.R | 5 +- R/functions.R | 19 ++++++++ R/report.R |only R/sysdata.rda |binary data/omopViewerPanels.rda |binary data/omopViewerResults.rda |binary inst/brand/complement/darwin.yml | 2 inst/doc/edit_static_content.html | 2 inst/doc/export_static_app.html | 85 +++++++++++++++++++++++++++----------- inst/functions.R | 18 ++++++-- man/exportStaticApp.Rd | 7 +++ man/omopViewerPanels.Rd | 2 man/omopViewerResults.Rd | 2 tests/testthat/_snaps |only tests/testthat/test-choices.R | 2 21 files changed, 194 insertions(+), 87 deletions(-)
Title: Latent Binary Bayesian Neural Networks Using 'torch'
Description: Latent binary Bayesian neural networks (LBBNNs) are implemented using
'torch', an R interface to the LibTorch backend. Supports mean-field variational
inference as well as flexible variational posteriors using normalizing flows.
The standard LBBNN implementation follows Hubin and Storvik (2024) <doi:10.3390/math12060788>,
using the local reparametrization trick as in Skaaret-Lund et al. (2024)
<https://openreview.net/pdf?id=d6kqUKzG3V>. Input-skip connections are also supported,
as described in Høyheim et al. (2025) <doi:10.48550/arXiv.2503.10496>.
Author: Lars Skaaret-Lund [aut, cre],
Aliaksandr Hubin [aut],
Eirik Hoeyheim [aut]
Maintainer: Lars Skaaret-Lund <lars.skaaret-lund@nmbu.no>
Diff between LBBNN versions 0.1.1 dated 2025-12-01 and 0.1.2 dated 2025-12-10
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NEWS.md | 11 +++++++---- R/LBBNN_Model.R | 3 ++- R/Layers.R | 12 +++++++++++- R/local_explanations.R | 4 +++- R/overwrite_functions.R | 7 +++---- R/plotting_graphs.R | 4 ++-- README.md | 3 +-- man/LBBNN_Linear.Rd | 5 ++++- man/figures/README-unnamed-chunk-6-1.png |binary man/predict.LBBNN_Net.Rd | 14 +++++++++++--- 12 files changed, 59 insertions(+), 34 deletions(-)
Title: Generalized Additive Models
Description: Functions for fitting and working with generalized additive models, as described in chapter 7 of "Statistical Models in S" (Chambers and Hastie (eds), 1991), and "Generalized Additive Models" (Hastie and Tibshirani, 1990).
Author: Trevor Hastie [aut, cre],
Balasubramanian Narasimhan [ctb]
Maintainer: Trevor Hastie <hastie@stanford.edu>
Diff between gam versions 1.22-6 dated 2025-08-22 and 1.22-7 dated 2025-12-10
ChangeLog | 2 ++ DESCRIPTION | 10 +++++----- MD5 | 11 ++++++----- R/gam-package.R | 2 +- cleanup |only man/predict.gam.Rd | 2 +- src/sbart.c | 2 +- 7 files changed, 16 insertions(+), 13 deletions(-)
Title: Test Theory Analysis and Biclustering
Description: Implements comprehensive test data engineering methods as described in
Shojima (2022, ISBN:978-9811699856). Provides statistical techniques for
engineering and processing test data: Classical Test Theory (CTT) with
reliability coefficients for continuous ability assessment; Item Response
Theory (IRT) including Rasch, 2PL, and 3PL models with item/test information
functions; Latent Class Analysis (LCA) for nominal clustering; Latent Rank
Analysis (LRA) for ordinal clustering with automatic determination of cluster
numbers; Biclustering methods including infinite relational models for
simultaneous clustering of examinees and items without predefined cluster
numbers; and Bayesian Network Models (BNM) for visualizing inter-item
dependencies. Features local dependence analysis through LRA and biclustering,
parameter estimation, dimensionality assessment, and network structure
visualization for educational, psychological, and social science research.
Author: Koji Kosugi [aut, cre]
Maintainer: Koji Kosugi <kosugitti@gmail.com>
Diff between exametrika versions 1.7.0 dated 2025-11-22 and 1.8.0 dated 2025-12-10
DESCRIPTION | 6 +-- MD5 | 34 ++++++++++----------- NEWS.md | 71 ++++++++++++++++++++++++++++++++++++++++++++ R/00_EMclus.R | 28 ++++++++--------- R/00_GridSearch.R | 22 +++++++++---- R/00_exametrikaPlot.R | 6 ++- R/05_LCA.R | 11 ++++-- R/06_LRA.R | 13 ++++---- R/07_Biclustering.R | 30 ++++++++++-------- R/07_IRM.R | 36 +++++++++++++--------- R/10_LDB.R | 4 +- R/12_LRA_ordinal.R | 29 ++++++++--------- R/13_LRA_rated.R | 29 ++++++++--------- R/15_Biclustering_nominal.R | 22 +++++++------ R/16_Biclustering_ordinal.R | 24 ++++++++------ man/Biclustering_IRM.Rd | 8 +++- man/GridSearch.Rd | 3 + man/LRA.Rd | 4 +- 18 files changed, 242 insertions(+), 138 deletions(-)
Title: R Interface to the 'DataONE' REST API
Description: Provides read and write access to data and metadata from
the 'DataONE' network <https://www.dataone.org> of data repositories.
Each 'DataONE' repository implements a consistent repository application
programming interface. Users call methods in R to access these remote
repository functions, such as methods to query the metadata catalog, get
access to metadata for particular data packages, and read the data objects
from the data repository. Users can also insert and update data objects on
repositories that support these methods.
Author: Matthew B. Jones [aut, cre] ,
Peter Slaughter [aut] ,
Rob Nahf [aut],
Carl Boettiger [aut] ,
Chris Jones [aut] ,
Bryce Mecum [aut] ,
Jeanette Clark [aut] ,
Jordan Read [ctb] ,
Lauren Walker [aut] ,
Edmund Hart [ctb] ,
Scott Chamberlain [ctb] ,
Regent [...truncated...]
Maintainer: Matthew B. Jones <jones@nceas.ucsb.edu>
This is a re-admission after prior archival of version 2.2.2 dated 2022-06-10
Diff between dataone versions 2.2.2 dated 2022-06-10 and 2.3.0 dated 2025-12-10
DESCRIPTION | 41 +-- MD5 | 248 +++++++++---------- NEWS | 8 R/AbstractTableDescriber.R | 6 R/AuthenticationManager.R | 74 ++--- R/CNode.R | 87 +++--- R/CertificateManager.R | 41 +-- R/D1Client.R | 166 ++++++------ R/D1Node.R | 119 ++++----- R/D1Object.R | 28 +- R/MNode.R | 89 +++--- R/auth_request.R | 37 ++ R/dataone-defunct.R | 76 ++--- R/dataone-deprecated.R | 23 - R/dataone-package.R | 25 + README.md | 44 ++- build/vignette.rds |binary inst/WORDLIST | 158 +++++------- inst/doc/v01-dataone-overview.R | 64 ++-- inst/doc/v01-dataone-overview.Rmd | 2 inst/doc/v01-dataone-overview.html | 187 +++++++------- inst/doc/v02-dataone-federation.R | 22 - inst/doc/v02-dataone-federation.Rmd | 9 inst/doc/v02-dataone-federation.html | 158 ++++++------ inst/doc/v03-searching-dataone.R | 96 +++---- inst/doc/v03-searching-dataone.Rmd | 7 inst/doc/v03-searching-dataone.html | 210 ++++++++-------- inst/doc/v04-download-data.R | 106 ++++---- inst/doc/v04-download-data.Rmd | 2 inst/doc/v04-download-data.html | 209 ++++++++-------- inst/doc/v05-upload-data.R | 124 ++++----- inst/doc/v05-upload-data.html | 363 ++++++++++++++-------------- inst/doc/v06-update-package.R | 106 ++++---- inst/doc/v06-update-package.html | 201 ++++++++------- inst/doc/v07-known-issues.R | 40 +-- inst/doc/v07-known-issues.html | 165 ++++++------ man/AbstractTableDescriber-class.Rd | 20 - man/AuthenticationManager-class.Rd | 60 ++-- man/AuthenticationManager.Rd | 2 man/CNode-class.Rd | 32 +- man/CNode.Rd | 6 man/CertificateManager-class.Rd | 50 +-- man/CertificateManager.Rd | 8 man/D1Client-class.Rd | 32 +- man/D1Client-initialize.Rd | 2 man/D1Client.Rd | 6 man/D1Node-class.Rd | 28 +- man/D1Object-class.Rd | 16 - man/D1Object-initialize.Rd | 2 man/D1Object.Rd | 2 man/MNode-class.Rd | 29 +- man/MNode.Rd | 4 man/addData.Rd | 2 man/archive.Rd | 11 man/auth_delete.Rd | 2 man/auth_get.Rd | 2 man/auth_head.Rd | 10 man/auth_post.Rd | 2 man/auth_put.Rd | 2 man/auth_put_post_delete.Rd | 2 man/canRead.Rd | 2 man/convert.csv.Rd | 2 man/createDataPackage.Rd | 2 man/createObject.Rd | 7 man/d1IdentifierSearch.Rd | 2 man/d1SolrQuery.Rd | 2 man/data.tableAttributeNames.Rd | 10 man/data.tableAttributeOrientation.Rd | 10 man/data.tableAttributeStorageTypes.Rd | 10 man/data.tableAttributeTypes.Rd | 10 man/data.tableMissingValueCodes.Rd | 10 man/data.tableSkipLinesHeader.Rd | 8 man/dataone-defunct.Rd | 82 +++--- man/dataone-deprecated.Rd | 20 - man/dataone.Rd | 24 + man/downloadCert.Rd | 8 man/downloadObject.Rd | 8 man/echoCredentials.Rd | 2 man/encodeUrlPath.Rd | 2 man/encodeUrlQuery.Rd | 2 man/generateIdentifier.Rd | 11 man/getAuthMethod.Rd | 2 man/getAuthSubject.Rd | 2 man/getCN.Rd | 2 man/getCertExpires.Rd | 2 man/getCertLocation.Rd | 4 man/getChecksum.Rd | 2 man/getD1Object.Rd | 2 man/getDataObject.Rd | 12 man/getDataPackage.Rd | 6 man/getEndpoint.Rd | 2 man/getErrorDescription.Rd | 12 man/getFormat.Rd | 2 man/getMN.Rd | 4 man/getMNode.Rd | 6 man/getMNodeId.Rd | 2 man/getObject.Rd | 2 man/getPackage.Rd | 6 man/getSystemMetadata.Rd | 2 man/hasReservation.Rd | 4 man/isAuthValid.Rd | 8 man/isAuthorized.Rd | 4 man/isCertExpired.Rd | 2 man/is_windows.Rd |only man/listFormats.Rd | 4 man/listMemberNodes.Rd | 2 man/listNodes.Rd | 2 man/obscureCert.Rd | 6 man/query.Rd | 10 man/reserveIdentifier.Rd | 2 man/restoreCert.Rd | 6 man/setMNodeId.Rd | 2 man/setObsoletedBy.Rd | 6 man/setPublicAccess.Rd | 6 man/updateObject.Rd | 9 man/updateSystemMetadata.Rd | 9 man/uploadDataObject.Rd | 2 man/uploadDataPackage.Rd | 14 - tests/testthat/helper-base.R | 10 tests/testthat/test.AuthenticationManager.R | 14 - tests/testthat/test.CNode.R | 3 tests/testthat/test.ssl.R |only vignettes/v01-dataone-overview.Rmd | 2 vignettes/v02-dataone-federation.Rmd | 9 vignettes/v03-searching-dataone.Rmd | 7 vignettes/v04-download-data.Rmd | 2 126 files changed, 2106 insertions(+), 2018 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-26 0.9.5
2016-02-29 0.9.2
2016-01-22 0.9.1
2016-01-19 0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-11-25 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-31 1.0.3
2024-04-26 1.0.2
2024-03-15 1.0.1
2023-12-06 1.0.0
2023-05-07 0.1.0
Title: Clustering of Weighted Data
Description: Clusters state sequences and weighted data. It provides an optimized weighted PAM algorithm as well as functions for aggregating replicated cases, computing cluster quality measures for a range of clustering solutions, sequence analysis typology validation using parametric bootstraps and plotting (fuzzy) clusters of state sequences. It further provides a fuzzy and crisp CLARA algorithm to cluster large database with sequence analysis, and a methodological framework for Robustness Assessment of Regressions using Cluster Analysis Typologies (RARCAT).
Author: Matthias Studer [aut, cre],
Leonard Roth [ctb]
Maintainer: Matthias Studer <matthias.studer@unige.ch>
Diff between WeightedCluster versions 1.8-1 dated 2024-12-10 and 2.0 dated 2025-12-10
DESCRIPTION | 19 ++- MD5 | 53 ++++++---- NAMESPACE | 14 +- NEWS | 10 ++ R/amemat.R |only R/bootclustrange.R | 3 R/clara_clustrange.R | 43 ++++++-- R/clustrangefamily.R | 2 R/rarcat.R |only R/wfcmdd.r | 169 +++++++++++++++++++---------------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/BigDataSA.html | 39 ++++---- inst/doc/ClusterExternalValidSA.Rmd | 2 inst/doc/ClusterExternalValidSA.html | 37 ++++--- inst/doc/ClusterValidSA.html | 59 ++++++------ inst/doc/FuzzySA.Rmd | 2 inst/doc/FuzzySA.html | 60 ++++++------ inst/doc/RARCAT.R |only inst/doc/RARCAT.Rmd |only inst/doc/RARCAT.html |only inst/doc/WeightedCluster.pdf |binary inst/doc/WeightedClusterFR.Rnw | 6 - inst/doc/WeightedClusterFR.pdf |binary inst/doc/WeightedClusterPreview.pdf |binary man/rarcat.Rd |only vignettes/ClusterExternalValidSA.Rmd | 2 vignettes/FuzzySA.Rmd | 2 vignettes/RARCAT.Rmd |only vignettes/WeightedClusterFR.Rnw | 6 - vignettes/manual.bib | 3 31 files changed, 298 insertions(+), 233 deletions(-)
More information about WeightedCluster at CRAN
Permanent link
Title: R Interface to W3C Markup Validation Services
Description: R interface to a W3C Markup Validation service.
See <https://validator.w3.org/> for more information.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between W3CMarkupValidator versions 0.2-1 dated 2025-08-23 and 0.2-2 dated 2025-12-10
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/w3c.R | 31 ++++++++++++++++++++----------- man/w3c_markup_validate.Rd | 19 +++++++++++++++++-- 4 files changed, 43 insertions(+), 19 deletions(-)
More information about W3CMarkupValidator at CRAN
Permanent link
Title: Genome Interval Arithmetic
Description: Read and manipulate genome intervals and signals. Provides
functionality similar to command-line tool suites within R, enabling
interactive analysis and visualization of genome-scale data. Riemondy
et al. (2017) <doi:10.12688/f1000research.11997.1>.
Author: Jay Hesselberth [aut, cre] ,
Kent Riemondy [aut] ,
RNA Bioscience Initiative [fnd, cph]
Maintainer: Jay Hesselberth <jay.hesselberth@cuanschutz.edu>
Diff between valr versions 0.8.4 dated 2025-06-22 and 0.9.0 dated 2025-12-10
valr-0.8.4/valr/R/RcppExports.R |only valr-0.8.4/valr/R/globals.r |only valr-0.8.4/valr/inst/include/DataFrameBuilder.h |only valr-0.8.4/valr/inst/include/IntervalTree.h |only valr-0.8.4/valr/inst/include/IntervalTree_ext.h |only valr-0.8.4/valr/inst/include/genome.h |only valr-0.8.4/valr/inst/include/group_apply.h |only valr-0.8.4/valr/inst/include/grouped_dataframe.h |only valr-0.8.4/valr/inst/include/intervals.h |only valr-0.8.4/valr/inst/include/random.h |only valr-0.8.4/valr/inst/include/utils.h |only valr-0.8.4/valr/man/read_bigwig.Rd |only valr-0.8.4/valr/src/RcppExports.cpp |only valr-0.8.4/valr/src/init.c |only valr-0.8.4/valr/src/valr_utils.cpp |only valr-0.9.0/valr/DESCRIPTION | 24 valr-0.9.0/valr/MD5 | 217 ++-- valr-0.9.0/valr/NAMESPACE | 12 valr-0.9.0/valr/NEWS.md | 32 valr-0.9.0/valr/R/bed12_to_exons.r | 1 valr-0.9.0/valr/R/bed_absdist.r | 14 valr-0.9.0/valr/R/bed_closest.r | 8 valr-0.9.0/valr/R/bed_cluster.r | 5 valr-0.9.0/valr/R/bed_complement.r | 13 valr-0.9.0/valr/R/bed_coverage.R | 25 valr-0.9.0/valr/R/bed_fisher.r | 5 valr-0.9.0/valr/R/bed_flank.r | 5 valr-0.9.0/valr/R/bed_genomecov.R | 15 valr-0.9.0/valr/R/bed_glyph.r | 24 valr-0.9.0/valr/R/bed_intersect.r | 38 valr-0.9.0/valr/R/bed_jaccard.r | 24 valr-0.9.0/valr/R/bed_makewindows.r | 1 valr-0.9.0/valr/R/bed_map.r | 24 valr-0.9.0/valr/R/bed_merge.r | 13 valr-0.9.0/valr/R/bed_partition.r | 5 valr-0.9.0/valr/R/bed_projection.r | 68 - 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valr-0.9.0/valr/man/bed_subtract.Rd | 7 valr-0.9.0/valr/man/bed_window.Rd | 11 valr-0.9.0/valr/man/reexports.Rd |only valr-0.9.0/valr/src/bed12toexons.cpp | 147 +- valr-0.9.0/valr/src/closest.cpp | 327 +++--- valr-0.9.0/valr/src/complement.cpp | 134 +- valr-0.9.0/valr/src/coverage.cpp | 218 ++-- valr-0.9.0/valr/src/cpp11.cpp |only valr-0.9.0/valr/src/dist.cpp | 182 +-- valr-0.9.0/valr/src/flank.cpp | 183 +-- valr-0.9.0/valr/src/gcoverage.cpp | 167 ++- valr-0.9.0/valr/src/intersect.cpp | 210 ++-- valr-0.9.0/valr/src/makewindows.cpp | 145 +- valr-0.9.0/valr/src/merge.cpp | 207 ++- valr-0.9.0/valr/src/partition.cpp | 172 +-- valr-0.9.0/valr/src/random.cpp | 110 +- valr-0.9.0/valr/src/shuffle.cpp | 372 +++---- valr-0.9.0/valr/src/subtract.cpp | 184 ++- valr-0.9.0/valr/tests/testthat/_snaps/glyph/intersect-glyph-is-ok.svg | 78 - valr-0.9.0/valr/tests/testthat/_snaps/glyph/merge-glyph-is-ok.svg | 60 - valr-0.9.0/valr/tests/testthat/test-db.r | 8 valr-0.9.0/valr/tests/testthat/test_absdist.r | 89 - 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valr-0.9.0/valr/tests/testthat/test_shuffle.r | 70 - valr-0.9.0/valr/tests/testthat/test_slop.r | 101 - valr-0.9.0/valr/tests/testthat/test_sort.r | 253 ++-- valr-0.9.0/valr/tests/testthat/test_spacing.r | 30 valr-0.9.0/valr/tests/testthat/test_strands.r | 14 valr-0.9.0/valr/tests/testthat/test_subtract.r | 230 ++-- valr-0.9.0/valr/tests/testthat/test_tbls.r | 22 valr-0.9.0/valr/tests/testthat/test_types.R | 36 valr-0.9.0/valr/tests/testthat/test_utils.r | 33 valr-0.9.0/valr/tests/testthat/test_window.r | 27 valr-0.9.0/valr/vignettes/valr.Rmd | 52 - 119 files changed, 4295 insertions(+), 3905 deletions(-)
Title: Interactively Gate Points
Description: Interactively gate points on a scatter plot. Interactively drawn gates are
recorded and can be applied programmatically to reproduce results exactly. Programmatic gating is
based on the package gatepoints by Wajid Jawaid.
Author: Stefano Mangiola [aut],
Wajid Jawaid [ctb],
William Hutchison [cre, aut]
Maintainer: William Hutchison <hutchison.w@wehi.edu.au>
Diff between tidygate versions 1.0.14 dated 2024-09-17 and 1.0.19 dated 2025-12-10
DESCRIPTION | 25 ++-- MD5 | 20 +-- NAMESPACE | 7 + R/gate_app.R | 7 - R/methods.R | 80 ++++++++++++++- build/stage23.rdb |binary build/vignette.rds |binary inst/doc/introdution.R | 34 +++--- inst/doc/introdution.html | 236 ++++++++++++++++++++-------------------------- man/gate.Rd | 5 man/gate_interactive.Rd | 6 - 11 files changed, 234 insertions(+), 186 deletions(-)
Title: Develop and Use Modular Health Economic Models
Description: A template model module, tools to help find model modules
derived from this template and a programming syntax to use these
modules in health economic analyses. These elements are the
foundation for a prototype software framework for developing living
and transferable models and using those models in reproducible health
economic analyses. The software framework is extended by other R
libraries. For detailed documentation about the framework and how to
use it visit <https://www.ready4-dev.com/>. For a background to the
methodological issues that the framework is attempting to help solve,
see Hamilton et al. (2024) <doi:10.1007/s40273-024-01378-8>.
Author: Matthew Hamilton [aut, cre, cph] ,
Orygen [cph, fnd],
Australian Government Research Training Program [fnd],
VicHealth [fnd],
Victoria University [fnd]
Maintainer: Matthew Hamilton <matthew.hamilton1@monash.edu>
Diff between ready4 versions 0.1.18 dated 2024-09-30 and 0.1.19 dated 2025-12-10
DESCRIPTION | 35 +- MD5 | 422 +++++++++++++++--------------- NAMESPACE | 2 NEWS.md | 4 R/C4_Ready4Project.R |only R/fn_get.R | 72 +++-- R/fn_make.R | 8 R/fn_write.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 38 +- inst/MD_RMDs/index.Rmd | 54 +-- inst/MD_RMDs/index_Body.Rmd | 36 +- inst/MD_Rmarkdown/index.en.Rmarkdown | 56 +-- inst/doc/V_01.R | 2 inst/doc/V_01.Rmd | 162 +++++------ inst/doc/V_01.html | 2 inst/doc/V_02.R | 4 inst/doc/V_02.Rmd | 134 ++++----- inst/doc/V_02.html | 23 - inst/doc/V_03.Rmd | 98 +++--- inst/doc/V_03.html | 2 inst/doc/V_04.R | 4 inst/doc/V_04.Rmd | 8 inst/doc/V_04.html | 55 +-- inst/doc/V_05.R | 8 inst/doc/V_05.Rmd | 122 ++++---- inst/doc/V_05.html | 12 inst/doc/V_06.Rmd | 84 ++--- inst/doc/V_06.html | 2 inst/doc/V_07.Rmd | 78 ++--- inst/doc/V_07.html | 2 inst/doc/ready4.html | 2 man/Ready4Module-class.Rd | 32 +- man/Ready4Private-class.Rd | 32 +- man/Ready4Project-class.Rd |only man/Ready4Public-class.Rd | 32 +- man/add_lups.Rd | 64 ++-- man/add_references.Rd | 58 ++-- man/add_rows_from_fn_args.Rd | 50 +-- man/add_scroll_box.Rd | 58 ++-- man/add_vignette_links.Rd | 70 ++-- man/author-methods.Rd | 38 +- man/authorClasses-methods.Rd | 38 +- man/authorData-methods.Rd | 38 +- man/authorFunctions-methods.Rd | 38 +- man/authorReport-methods.Rd | 38 +- man/authorSlot-methods.Rd | 58 ++-- man/bind_tables_from_loc_files.Rd | 58 ++-- man/characterize-methods.Rd | 38 +- man/characterizeSlot-methods.Rd | 58 ++-- man/depict-methods.Rd | 38 +- man/depictSlot-methods.Rd | 58 ++-- man/deprecated.Rd | 30 +- man/dotdata.Rd | 30 +- man/enhance-methods.Rd | 38 +- man/enhanceSlot-methods.Rd | 58 ++-- man/examples/get_datasets_tb.R | 2 man/examples/get_from_lup_obj.R | 14 man/examples/get_gracefully.R | 78 ++--- man/examples/get_libraries_tb.R | 2 man/examples/get_methods.R | 2 man/examples/get_methods_tb.R | 2 man/examples/get_modules_tb.R | 2 man/examples/make_code_releases_tbl.R | 26 - man/examples/make_datasets_tb.R | 22 - man/examples/make_ds_releases_tbl.R | 2 man/examples/make_methods_tb.R | 8 man/examples/make_modules_tb.R | 8 man/examples/make_programs_tbl.R | 18 - man/examples/print_data.R | 10 man/examples/print_methods.R | 10 man/examples/print_modules.R | 10 man/examples/print_packages.R | 42 +- man/examples/procureSlot_Ready4Module.R | 4 man/examples/renewSlot_Ready4Module.R | 4 man/examples/write_to_copy_rmds.R | 12 man/examples/write_to_render_post.R | 56 +-- man/examples/write_ws.R | 6 man/exhibit-methods.Rd | 38 +- man/exhibitSlot-methods.Rd | 58 ++-- man/figures/lifecycle-archived.svg | 42 +- man/figures/lifecycle-defunct.svg | 42 +- man/figures/lifecycle-maturing.svg | 42 +- man/figures/lifecycle-questioning.svg | 42 +- man/figures/lifecycle-soft-deprecated.svg | 42 +- man/get_badge_urls.Rd | 52 +-- man/get_badges_lup.Rd | 52 +-- man/get_cls_extensions.Rd | 64 ++-- man/get_datasets_tb.Rd | 58 ++-- man/get_digits_from_text.Rd | 36 +- man/get_dv_fls_urls.Rd | 64 ++-- man/get_examples.Rd | 40 +- man/get_excluded_repos.Rd | 46 +-- man/get_fl_extension.Rd | 36 +- man/get_fl_id_from_dv_ls.Rd | 44 +-- man/get_fl_nm_from_path.Rd | 36 +- man/get_from_lup_obj.Rd | 80 ++--- man/get_functions_tb.Rd | 52 +-- man/get_generics.Rd | 58 ++-- man/get_gh_repos.Rd | 36 +- man/get_gracefully.Rd | 6 man/get_libraries_ls.Rd | 46 +-- man/get_libraries_tb.Rd | 50 +-- man/get_manual_urls.Rd | 46 +-- man/get_methods.Rd | 44 +-- man/get_methods_tb.Rd | 50 +-- man/get_modules_tb.Rd | 50 +-- man/get_mthd_titles.Rd | 52 +-- man/get_r4_obj_slots.Rd | 40 +- man/get_rds_from_dv.Rd | 3 man/get_source_code_urls.Rd | 46 +-- man/get_subroutine_repos.Rd | 46 +-- man/get_table_from_loc_file.Rd | 68 ++-- man/ingest-methods.Rd | 38 +- man/ingestSlot-methods.Rd | 58 ++-- man/investigate-methods.Rd | 38 +- man/investigateSlot-methods.Rd | 58 ++-- man/make_additions_tb.Rd | 58 ++-- man/make_code_releases_tbl.Rd | 162 +++++------ man/make_datasets_tb.Rd | 106 +++---- man/make_ds_releases_tbl.Rd | 74 ++--- man/make_dss_tb.Rd | 58 ++-- man/make_files_tb.Rd | 44 +-- man/make_fn_defaults_ls.Rd | 36 +- man/make_framework_pkgs_chr.Rd | 46 +-- man/make_libraries_ls.Rd | 52 +-- man/make_libraries_tb.Rd | 88 +++--- man/make_list_phrase.Rd | 36 +- man/make_local_path_to_dv_data.Rd | 44 +-- man/make_methods_tb.Rd | 98 +++--- man/make_modules_pkgs_chr.Rd | 58 ++-- man/make_modules_tb.Rd | 98 +++--- man/make_programs_tbl.Rd | 120 ++++---- man/make_prompt.Rd | 44 +-- man/manufacture-methods.Rd | 38 +- man/manufactureSlot-methods.Rd | 58 ++-- man/metamorphose-methods.Rd | 38 +- man/metamorphoseSlot-methods.Rd | 58 ++-- man/nseequals.Rd | 30 +- man/pipe.Rd | 30 +- man/print_data.Rd | 100 +++---- man/print_dss.Rd | 76 ++--- man/print_dvs.Rd | 82 ++--- man/print_methods.Rd | 124 ++++---- man/print_modules.Rd | 76 ++--- man/print_packages.Rd | 174 ++++++------ man/print_vignettes.Rd | 118 ++++---- man/procureSlot-methods.Rd | 70 ++-- man/prognosticate-methods.Rd | 38 +- man/prognosticateSlot-methods.Rd | 58 ++-- man/ratify-methods.Rd | 38 +- man/ratifySlot-methods.Rd | 58 ++-- man/ready4-package.Rd | 90 +++--- man/reckon-methods.Rd | 38 +- man/reckonSlot-methods.Rd | 58 ++-- man/remove_lbls_from_df.Rd | 36 +- man/renew-methods.Rd | 38 +- man/rowbind_all_tbs_in_r4_obj.Rd | 44 +-- man/rowbind_tbs_in_r4_obj.Rd | 48 +-- man/share-methods.Rd | 38 +- man/shareSlot-methods.Rd | 58 ++-- man/transform_chr_to_num.Rd | 36 +- man/transform_cls_type_ls.Rd | 36 +- man/update_libraries_ls.Rd | 52 +-- man/update_libraries_tb.Rd | 94 +++--- man/update_pt_fn_args_ls.Rd | 36 +- man/update_tb_r3.Rd | 94 +++--- man/write_all_tbs_in_tbs_r4_to_csvs.Rd | 76 ++--- man/write_blog_entries.Rd | 70 ++-- man/write_citation_cff.Rd | 70 ++-- man/write_conditional_tags.Rd | 76 ++--- man/write_dv_fl_to_loc.Rd | 106 +++---- man/write_env_objs_to_dv.Rd | 112 +++---- man/write_examples.Rd | 70 ++-- man/write_extra_pkgs_to_actions.Rd | 58 ++-- man/write_fls_from_dv.Rd | 88 +++--- man/write_fls_to_dv.Rd | 88 +++--- man/write_fls_to_repo.Rd | 112 +++---- man/write_from_tmp.Rd | 76 ++--- man/write_ingested_dv_fl.Rd | 106 +++---- man/write_library_metadata.Rd | 148 +++++----- man/write_new_credentials.Rd | 70 ++-- man/write_new_dirs.Rd | 58 ++-- man/write_new_files.Rd | 88 +++--- man/write_obj_with_prompt.Rd | 76 ++--- man/write_prj_outp_dirs.Rd | 70 ++-- man/write_tb_to_csv.Rd | 82 ++--- man/write_to_copy_rmds.Rd | 90 +++--- man/write_to_delete_dirs.Rd | 58 ++-- man/write_to_delete_fls.Rd | 64 ++-- man/write_to_dv_from_tbl.Rd | 82 ++--- man/write_to_dv_with_wait.Rd | 118 ++++---- man/write_to_edit_workflow.Rd | 64 ++-- man/write_to_force_links_in.Rd | 64 ++-- man/write_to_publish_dv_ds.Rd | 64 ++-- man/write_to_render_post.Rd | 134 ++++----- man/write_to_trim_html.Rd | 58 ++-- man/write_with_consent.Rd | 106 +++---- man/write_words.Rd | 70 ++-- man/write_ws.Rd | 66 ++-- tests/testthat.R | 24 - tests/testthat/setup.R | 10 tests/testthat/test-fn_get.R | 78 ++--- tests/testthat/test-fn_make.R | 136 ++++----- tests/testthat/test-fn_write.R | 120 ++++---- vignettes/V_01.Rmd | 162 +++++------ vignettes/V_02.Rmd | 134 ++++----- vignettes/V_03.Rmd | 98 +++--- vignettes/V_04.Rmd | 8 vignettes/V_05.Rmd | 122 ++++---- vignettes/V_06.Rmd | 84 ++--- vignettes/V_07.Rmd | 78 ++--- 213 files changed, 5910 insertions(+), 5886 deletions(-)
Title: Multivariate Imputation by Chained Equations
Description: Multiple imputation using Fully Conditional Specification (FCS)
implemented by the MICE algorithm as described in Van Buuren and
Groothuis-Oudshoorn (2011) <doi:10.18637/jss.v045.i03>. Each variable has
its own imputation model. Built-in imputation models are provided for
continuous data (predictive mean matching, normal), binary data (logistic
regression), unordered categorical data (polytomous logistic regression)
and ordered categorical data (proportional odds). MICE can also impute
continuous two-level data (normal model, pan, second-level variables).
Passive imputation can be used to maintain consistency between variables.
Various diagnostic plots are available to inspect the quality of the
imputations.
Author: Stef van Buuren [aut, cre],
Karin Groothuis-Oudshoorn [aut],
Gerko Vink [ctb],
Rianne Schouten [ctb],
Alexander Robitzsch [ctb],
Patrick Rockenschaub [ctb],
Lisa Doove [ctb],
Shahab Jolani [ctb],
Margarita Moreno-Betancur [ctb],
Ian White [ctb],
Phil [...truncated...]
Maintainer: Stef van Buuren <stef.vanbuuren@tno.nl>
Diff between mice versions 3.18.0 dated 2025-05-27 and 3.19.0 dated 2025-12-10
DESCRIPTION | 20 ++++++--- MD5 | 26 +++++++----- NAMESPACE | 4 + NEWS.md | 33 +++++++++++++++ R/barnard.rubin.R | 11 +++-- R/predict_mi.R |only R/summary.R | 65 ++++++++++++++++++++++++------- R/tbc.R | 2 README.md | 2 build/partial.rdb |binary man/mice.Rd | 2 man/predict_mi.Rd |only man/tbc.Rd | 2 tests/testthat/test-banard.rubin.R |only tests/testthat/test-mice.impute.2l.bin.R | 2 tests/testthat/test-predict_mi.R |only 16 files changed, 130 insertions(+), 39 deletions(-)
Title: Hashmaps and Memoization (in-Memory Caching of Repeated
Computations)
Description: A simple in-memory, LRU cache that can be wrapped
around any function to memoize it. The cache is keyed on a hash
of the input data (using 'digest') or on pointer equivalence.
Also includes a generic hashmap object that can key on any object type.
Author: Peter Meilstrup [aut, cre]
Maintainer: Peter Meilstrup <peter.meilstrup@gmail.com>
Diff between memo versions 1.1.1 dated 2023-12-11 and 1.1.2 dated 2025-12-10
memo-1.1.1/memo/vignettes/README-woven.md |only memo-1.1.2/memo/DESCRIPTION | 24 +- memo-1.1.2/memo/MD5 | 38 +-- memo-1.1.2/memo/NAMESPACE | 1 memo-1.1.2/memo/NEWS | 6 memo-1.1.2/memo/R/cache.R | 16 - memo-1.1.2/memo/R/getPointer.R | 1 memo-1.1.2/memo/R/lru.R | 46 ++-- memo-1.1.2/memo/R/map.R | 7 memo-1.1.2/memo/build/vignette.rds |binary memo-1.1.2/memo/inst/doc/README.R | 2 memo-1.1.2/memo/inst/doc/README.html | 248 +++++++++++++++----------- memo-1.1.2/memo/man/lru_cache.Rd | 8 memo-1.1.2/memo/man/memo-package.Rd | 1 memo-1.1.2/memo/src/getPointer.c | 34 +++ memo-1.1.2/memo/src/vadr.c | 9 memo-1.1.2/memo/src/vadr.h | 7 memo-1.1.2/memo/tests/testthat/last.dump.rda |only memo-1.1.2/memo/tests/testthat/test-cache.R | 35 +++ memo-1.1.2/memo/tests/testthat/test-hashmap.R | 1 memo-1.1.2/memo/tests/testthat/test-lru.R | 8 21 files changed, 301 insertions(+), 191 deletions(-)
Title: Download Map Data from GISCO API - Eurostat
Description: Tools to download data from the GISCO (Geographic Information
System of the Commission) Eurostat database
<https://ec.europa.eu/eurostat/web/gisco>. Global and European map
data available. This package is in no way officially related to or
endorsed by Eurostat.
Author: Diego Hernangomez [aut, cre, cph] ,
Eurostat [cph] ,
EuroGeographics [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between giscoR versions 0.6.1 dated 2025-01-27 and 1.0.0 dated 2025-12-10
giscoR-0.6.1/giscoR/R/gisco_addressapi.R |only giscoR-0.6.1/giscoR/R/gisco_attributions.R |only giscoR-0.6.1/giscoR/R/gisco_bulk_download.R |only giscoR-0.6.1/giscoR/R/gisco_cache.R |only giscoR-0.6.1/giscoR/R/gisco_check_access.R |only giscoR-0.6.1/giscoR/R/gisco_clear_cache.R |only giscoR-0.6.1/giscoR/R/gisco_get_airports.R |only giscoR-0.6.1/giscoR/R/gisco_get_coastallines.R |only giscoR-0.6.1/giscoR/R/gisco_get_countries.R |only giscoR-0.6.1/giscoR/R/gisco_get_education.R |only giscoR-0.6.1/giscoR/R/gisco_get_grid.R |only giscoR-0.6.1/giscoR/R/gisco_get_healthcare.R |only giscoR-0.6.1/giscoR/R/gisco_get_lau.R |only giscoR-0.6.1/giscoR/R/gisco_get_nuts.R |only giscoR-0.6.1/giscoR/R/gisco_get_postalcodes.R |only giscoR-0.6.1/giscoR/R/gisco_get_units.R |only giscoR-0.6.1/giscoR/R/gisco_get_urban_audit.R |only giscoR-0.6.1/giscoR/R/utils_downloads.R |only giscoR-0.6.1/giscoR/R/utils_names.R |only giscoR-0.6.1/giscoR/data/gisco_coastallines.rda |only giscoR-0.6.1/giscoR/data/gisco_countries.rda |only giscoR-0.6.1/giscoR/data/gisco_nuts.rda |only giscoR-0.6.1/giscoR/man/chunks/addressapi.Rmd |only giscoR-0.6.1/giscoR/man/gisco_addressapi.Rd |only giscoR-0.6.1/giscoR/man/gisco_coastallines.Rd |only giscoR-0.6.1/giscoR/man/gisco_countries.Rd |only giscoR-0.6.1/giscoR/man/gisco_get.Rd |only giscoR-0.6.1/giscoR/man/gisco_get_coastallines.Rd |only giscoR-0.6.1/giscoR/man/gisco_get_postalcodes.Rd |only giscoR-0.6.1/giscoR/man/gisco_nuts.Rd |only giscoR-0.6.1/giscoR/tests/testthat/_snaps/gisco_attributions.md |only giscoR-0.6.1/giscoR/tests/testthat/test-gisco_addressapi.R |only giscoR-0.6.1/giscoR/tests/testthat/test-gisco_attributions.R |only giscoR-0.6.1/giscoR/tests/testthat/test-gisco_bulk_download.R |only giscoR-0.6.1/giscoR/tests/testthat/test-gisco_cache.R |only giscoR-0.6.1/giscoR/tests/testthat/test-gisco_get_airports.R |only giscoR-0.6.1/giscoR/tests/testthat/test-gisco_get_coastallines.R |only giscoR-0.6.1/giscoR/tests/testthat/test-gisco_get_communes.R |only giscoR-0.6.1/giscoR/tests/testthat/test-gisco_get_countries.R |only giscoR-0.6.1/giscoR/tests/testthat/test-gisco_get_education.R |only giscoR-0.6.1/giscoR/tests/testthat/test-gisco_get_grid.R |only giscoR-0.6.1/giscoR/tests/testthat/test-gisco_get_healthcare.R |only giscoR-0.6.1/giscoR/tests/testthat/test-gisco_get_lau.R |only giscoR-0.6.1/giscoR/tests/testthat/test-gisco_get_nuts.R |only giscoR-0.6.1/giscoR/tests/testthat/test-gisco_get_postalcodes.R |only giscoR-0.6.1/giscoR/tests/testthat/test-gisco_get_units.R |only giscoR-0.6.1/giscoR/tests/testthat/test-gisco_get_urban_audit.R |only giscoR-1.0.0/giscoR/DESCRIPTION | 29 giscoR-1.0.0/giscoR/MD5 | 230 +++- giscoR-1.0.0/giscoR/NAMESPACE | 34 giscoR-1.0.0/giscoR/NEWS.md | 274 ++++- giscoR-1.0.0/giscoR/R/data.R | 483 +++++----- giscoR-1.0.0/giscoR/R/docs.R |only giscoR-1.0.0/giscoR/R/gisco-address-api.R |only giscoR-1.0.0/giscoR/R/gisco-attributions.R |only giscoR-1.0.0/giscoR/R/gisco-bulk-download.R |only giscoR-1.0.0/giscoR/R/gisco-cache.R |only giscoR-1.0.0/giscoR/R/gisco-check-access.R |only giscoR-1.0.0/giscoR/R/gisco-get-airports.R |only giscoR-1.0.0/giscoR/R/gisco-get-cached-db.R |only giscoR-1.0.0/giscoR/R/gisco-get-census.R |only giscoR-1.0.0/giscoR/R/gisco-get-coastal-lines.R |only giscoR-1.0.0/giscoR/R/gisco-get-communes.R |only giscoR-1.0.0/giscoR/R/gisco-get-countries.R |only giscoR-1.0.0/giscoR/R/gisco-get-education.R |only giscoR-1.0.0/giscoR/R/gisco-get-grid.R |only giscoR-1.0.0/giscoR/R/gisco-get-healthcare.R |only giscoR-1.0.0/giscoR/R/gisco-get-lau.R |only giscoR-1.0.0/giscoR/R/gisco-get-metadata.R |only giscoR-1.0.0/giscoR/R/gisco-get-nuts.R |only giscoR-1.0.0/giscoR/R/gisco-get-ports.R |only giscoR-1.0.0/giscoR/R/gisco-get-postal-codes.R |only giscoR-1.0.0/giscoR/R/gisco-get-unit-country.R |only giscoR-1.0.0/giscoR/R/gisco-get-unit-nuts.R |only giscoR-1.0.0/giscoR/R/gisco-get-unit-urban-audit.R |only giscoR-1.0.0/giscoR/R/gisco-get-units.R |only giscoR-1.0.0/giscoR/R/gisco-get-urban-audit.R |only giscoR-1.0.0/giscoR/R/gisco-id-api.R |only giscoR-1.0.0/giscoR/R/giscoR-package.R | 9 giscoR-1.0.0/giscoR/R/utils-country.R |only giscoR-1.0.0/giscoR/R/utils-sf.R |only giscoR-1.0.0/giscoR/R/utils-url.R |only giscoR-1.0.0/giscoR/R/utils.R |only giscoR-1.0.0/giscoR/R/zzz.R |only giscoR-1.0.0/giscoR/README.md | 294 ++---- giscoR-1.0.0/giscoR/build/stage23.rdb |only giscoR-1.0.0/giscoR/build/vignette.rds |binary giscoR-1.0.0/giscoR/data/gisco_coastal_lines.rda |only giscoR-1.0.0/giscoR/data/gisco_countries_2024.rda |only giscoR-1.0.0/giscoR/data/gisco_countrycode.rda |binary giscoR-1.0.0/giscoR/data/gisco_db.rda |binary giscoR-1.0.0/giscoR/data/gisco_nuts_2024.rda |only giscoR-1.0.0/giscoR/inst/COPYRIGHTS | 186 ++- giscoR-1.0.0/giscoR/inst/WORDLIST | 65 - giscoR-1.0.0/giscoR/inst/doc/giscoR.Rmd | 222 ++-- giscoR-1.0.0/giscoR/inst/doc/giscoR.html | 390 ++++---- giscoR-1.0.0/giscoR/inst/schemaorg.json | 8 giscoR-1.0.0/giscoR/man/chunks/address_api.Rmd |only giscoR-1.0.0/giscoR/man/chunks/education_meta.Rmd |only giscoR-1.0.0/giscoR/man/chunks/healthcare_meta.Rmd |only giscoR-1.0.0/giscoR/man/figures/README-resolution-map-1.png |only giscoR-1.0.0/giscoR/man/figures/README-thematic-map-1.png |only giscoR-1.0.0/giscoR/man/figures/lifecycle-deprecated.svg |only giscoR-1.0.0/giscoR/man/figures/lifecycle-experimental.svg |only giscoR-1.0.0/giscoR/man/figures/lifecycle-stable.svg |only giscoR-1.0.0/giscoR/man/figures/lifecycle-superseded.svg |only giscoR-1.0.0/giscoR/man/figures/logo.png |binary giscoR-1.0.0/giscoR/man/giscoR-package.Rd | 63 - giscoR-1.0.0/giscoR/man/gisco_address_api.Rd |only giscoR-1.0.0/giscoR/man/gisco_attributions.Rd | 58 - giscoR-1.0.0/giscoR/man/gisco_bulk_download.Rd | 154 +-- giscoR-1.0.0/giscoR/man/gisco_check_access.Rd | 10 giscoR-1.0.0/giscoR/man/gisco_clear_cache.Rd | 29 giscoR-1.0.0/giscoR/man/gisco_coastal_lines.Rd |only giscoR-1.0.0/giscoR/man/gisco_countries_2024.Rd |only giscoR-1.0.0/giscoR/man/gisco_countrycode.Rd | 64 - 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Title: Methods to Convert R Data to YAML and Back
Description: Implements the 'libyaml' 'YAML' 1.1 parser and emitter
(<https://pyyaml.org/wiki/LibYAML>) for R.
Author: Hadley Wickham [cre] ,
Shawn Garbett [ctb] ,
Jeremy Stephens [aut, ctb],
Kirill Simonov [aut],
Yihui Xie [ctb] ,
Zhuoer Dong [ctb],
Jeffrey Horner [ctb],
reikoch [ctb],
Will Beasley [ctb] ,
Brendan O'Connor [ctb],
Michael Quinn [ctb],
Charlie Gao [ct [...truncated...]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between yaml versions 2.3.11 dated 2025-11-28 and 2.3.12 dated 2025-12-10
yaml-2.3.11/yaml/inst/CHANGELOG |only yaml-2.3.11/yaml/inst/implicit.re |only yaml-2.3.11/yaml/inst/tests |only yaml-2.3.11/yaml/tests/RUnit.R |only yaml-2.3.12/yaml/DESCRIPTION | 72 +++++------ yaml-2.3.12/yaml/MD5 | 61 +++++---- yaml-2.3.12/yaml/NAMESPACE | 9 + yaml-2.3.12/yaml/NEWS.md |only yaml-2.3.12/yaml/R/as.yaml.R | 146 +++++++++++++++++++++- yaml-2.3.12/yaml/R/read_yaml.R | 85 +++++++++++-- yaml-2.3.12/yaml/R/verbatim_logical.R | 21 +++ yaml-2.3.12/yaml/R/write_yaml.R | 42 +++++- yaml-2.3.12/yaml/R/yaml-package.R |only yaml-2.3.12/yaml/R/yaml.load.R | 154 ++++++++++++++++++++++- yaml-2.3.12/yaml/R/yaml.load_file.R | 22 ++- yaml-2.3.12/yaml/README.md |only yaml-2.3.12/yaml/build |only yaml-2.3.12/yaml/inst/doc |only yaml-2.3.12/yaml/man/as.yaml.Rd | 155 ++++++++++++++---------- yaml-2.3.12/yaml/man/read_yaml.Rd | 97 +++++++++------ yaml-2.3.12/yaml/man/verbatim_logical.Rd | 49 +++---- yaml-2.3.12/yaml/man/write_yaml.Rd | 44 ++++-- yaml-2.3.12/yaml/man/yaml-package.Rd |only yaml-2.3.12/yaml/man/yaml.load.Rd | 200 +++++++++++++++++-------------- yaml-2.3.12/yaml/src/r_emit.c | 10 - yaml-2.3.12/yaml/src/r_ext.c | 8 - yaml-2.3.12/yaml/src/r_ext.h | 4 yaml-2.3.12/yaml/src/r_parse.c | 12 - yaml-2.3.12/yaml/tests/testthat |only yaml-2.3.12/yaml/tests/testthat.R |only yaml-2.3.12/yaml/vignettes |only 31 files changed, 842 insertions(+), 349 deletions(-)
Title: Variable Importance Plots
Description: A general framework for constructing variable importance plots from
various types of machine learning models in R. Aside from some standard model-
specific variable importance measures, this package also provides model-
agnostic approaches that can be applied to any supervised learning algorithm.
These include 1) an efficient permutation-based variable importance measure,
2) variable importance based on Shapley values (Strumbelj and Kononenko,
2014) <doi:10.1007/s10115-013-0679-x>, and 3) the variance-based
approach described in Greenwell et al. (2018) <doi:10.48550/arXiv.1805.04755>. A
variance-based method for quantifying the relative strength of interaction
effects is also included (see the previous reference for details).
Author: Brandon M. Greenwell [aut, cre] ,
Brad Boehmke [aut]
Maintainer: Brandon M. Greenwell <greenwell.brandon@gmail.com>
Diff between vip versions 0.4.2 dated 2025-12-02 and 0.4.3 dated 2025-12-10
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 +++- inst/tinytest/test_pkg_lightgbm.R | 3 +++ inst/tinytest/test_vi_firm.R | 3 +++ inst/tinytest/test_vi_permute.R | 3 +++ 6 files changed, 20 insertions(+), 9 deletions(-)
Title: Targeted Inference
Description: Various methods for targeted and semiparametric inference including
augmented inverse probability weighted (AIPW) estimators for missing data and
causal inference (Bang and Robins (2005) <doi:10.1111/j.1541-0420.2005.00377.x>),
variable importance and conditional average treatment effects (CATE)
(van der Laan (2006) <doi:10.2202/1557-4679.1008>),
estimators for risk differences and relative risks (Richardson et al. (2017)
<doi:10.1080/01621459.2016.1192546>), assumption lean inference for generalized
linear model parameters (Vansteelandt et al. (2022) <doi:10.1111/rssb.12504>).
Author: Klaus K. Holst [aut, cre],
Benedikt Sommer [aut],
Andreas Nordland [aut],
Christian B. Pipper [ctb]
Maintainer: Klaus K. Holst <klaus@holst.it>
Diff between targeted versions 0.6 dated 2025-10-30 and 0.7 dated 2025-12-10
targeted-0.6/targeted/inst/doc/predictionclass.Rmd |only targeted-0.6/targeted/inst/doc/riskregression.Rmd |only targeted-0.6/targeted/inst/tinytest/test_test_sw.R |only targeted-0.6/targeted/vignettes/predictionclass.Rmd |only targeted-0.6/targeted/vignettes/riskregression.Rmd |only targeted-0.7/targeted/DESCRIPTION | 35 targeted-0.7/targeted/MD5 | 98 targeted-0.7/targeted/NAMESPACE | 6 targeted-0.7/targeted/NEWS.md | 54 targeted-0.7/targeted/R/RcppExports.R | 4 targeted-0.7/targeted/R/calibration.R | 10 targeted-0.7/targeted/R/cate.R | 6 targeted-0.7/targeted/R/cumhaz.R | 30 targeted-0.7/targeted/R/design.R | 134 - targeted-0.7/targeted/R/intsurv.R | 2 targeted-0.7/targeted/R/learner.R | 3 targeted-0.7/targeted/R/learner_sl.R | 2 targeted-0.7/targeted/R/learner_stratify.R | 2 targeted-0.7/targeted/R/learner_xgboost.R | 34 targeted-0.7/targeted/R/naivebayes.R | 51 targeted-0.7/targeted/R/riskreg.R | 2 targeted-0.7/targeted/R/targeted-package.R | 2 targeted-0.7/targeted/R/test_intersection_sw.R | 208 + targeted-0.7/targeted/R/truncatedscore.R | 7 targeted-0.7/targeted/build/partial.rdb |binary targeted-0.7/targeted/build/vignette.rds |binary targeted-0.7/targeted/inst/doc/predictionclass.R | 36 targeted-0.7/targeted/inst/doc/predictionclass.html | 1196 +++++----- targeted-0.7/targeted/inst/doc/predictionclass.qmd |only targeted-0.7/targeted/inst/doc/riskregression.R | 35 targeted-0.7/targeted/inst/doc/riskregression.html | 964 +++++--- targeted-0.7/targeted/inst/doc/riskregression.qmd |only targeted-0.7/targeted/inst/include/targeted_RcppExports.h | 8 targeted-0.7/targeted/inst/slowtest/test_sl.R | 50 targeted-0.7/targeted/inst/tinytest/test_cumhaz.R | 14 targeted-0.7/targeted/inst/tinytest/test_design.R | 198 + targeted-0.7/targeted/inst/tinytest/test_intersection_sw.R | 40 targeted-0.7/targeted/inst/tinytest/test_learner.R | 8 targeted-0.7/targeted/inst/tinytest/test_learner_glm.R | 2 targeted-0.7/targeted/inst/tinytest/test_learner_naivebayes.R | 6 targeted-0.7/targeted/inst/tinytest/test_learner_xgboost.R | 10 targeted-0.7/targeted/man/calibration.Rd | 2 targeted-0.7/targeted/man/design.Rd | 6 targeted-0.7/targeted/man/learner_xgboost.Rd | 25 targeted-0.7/targeted/man/naivebayes.Rd | 1 targeted-0.7/targeted/man/targeted-package.Rd | 5 targeted-0.7/targeted/man/test_intersection_sw.Rd | 42 targeted-0.7/targeted/man/test_zmax_onesided.Rd |only targeted-0.7/targeted/src/RcppExports.cpp | 17 targeted-0.7/targeted/src/target/include/target/dykstra.hpp | 9 targeted-0.7/targeted/src/target/src/dykstra.cpp | 17 targeted-0.7/targeted/src/utils_interface.cpp | 10 targeted-0.7/targeted/tests/tinytest.R | 4 targeted-0.7/targeted/vignettes/predictionclass.qmd |only targeted-0.7/targeted/vignettes/riskregression.qmd |only 55 files changed, 2170 insertions(+), 1225 deletions(-)
Title: RDF Library Bindings in R
Description: Provides methods to parse, query and serialize information
stored in the Resource Description Framework (RDF). RDF is described at <https://www.w3.org/TR/rdf-primer/>.
This package supports RDF by implementing an R interface to the Redland RDF C library,
described at <https://librdf.org/docs/api/index.html>. In brief, RDF provides a structured graph
consisting of Statements composed of Subject, Predicate, and Object Nodes.
Author: Matthew B. Jones [aut, cre] ,
Peter Slaughter [aut] ,
Jeroen Ooms [aut] ,
Carl Boettiger [aut] ,
Scott Chamberlain [ctb] ,
David Beckett [cph],
University of Bristol [cph],
Regents of the University of California [cph]
Maintainer: Matthew B. Jones <jones@nceas.ucsb.edu>
Diff between redland versions 1.0.17-18 dated 2024-02-23 and 1.0.17-19 dated 2025-12-10
DESCRIPTION | 22 ++++++++++++---------- MD5 | 21 +++++++++++++++------ NEWS | 7 +++++++ R/redland-package.R | 20 +++++++++++++------- build/vignette.rds |binary inst/Makefile |only inst/config.log |only inst/config.status |only inst/doc/redland_overview.html | 5 +++-- src/redland.c | 6 +++--- tools/Makefile |only tools/NEWS |only tools/README |only tools/aclocal.m4 |only tools/config.log |only tools/config.status |only 16 files changed, 53 insertions(+), 28 deletions(-)
Title: Selection of Linear Estimators
Description: Estimate the mean of a Gaussian vector, by choosing among a large collection of estimators,
following the method developed by Y. Baraud, C. Giraud and S. Huet (2014) <doi:10.1214/13-AIHP539>.
In particular it solves the problem of variable selection by choosing the best predictor among predictors emanating from different methods as lasso,
elastic-net, adaptive lasso, pls, randomForest. Moreover, it can be applied for choosing the tuning parameter in a Gauss-lasso procedure.
Author: Yannick Baraud [aut],
Christophe Giraud [aut],
Sylvie Huet [aut],
Benjamin Auder [cre]
Maintainer: Benjamin Auder <benjamin.auder@universite-paris-saclay.fr>
Diff between LINselect versions 1.1.5 dated 2023-12-07 and 1.1.6 dated 2025-12-10
DESCRIPTION | 19 +++++++++++++------ MD5 | 4 ++-- man/VARselect.Rd | 2 +- 3 files changed, 16 insertions(+), 9 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and an R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 1.4.2 dated 2025-11-17 and 1.4.3 dated 2025-12-10
DESCRIPTION | 6 MD5 | 48 - NEWS.md | 21 R/backend-dbplyr__duckdb_connection.R | 18 R/duckdb.R | 6 R/version.R | 2 src/altrepdataframe_relation.dd | 665 ------------- src/connection.dd | 666 ------------- src/convert.dd | 661 ------------- src/database.dd | 668 -------------- src/duckdb.tar.xz |binary src/include/rapi.hpp | 2 src/register.dd | 700 -------------- src/relational.dd | 709 -------------- src/reltoaltrep.dd | 761 --------------- src/rfuns.dd | 654 ------------- src/scan.dd | 664 ------------- src/statement.dd | 762 ---------------- src/transform.dd | 663 ------------- src/types.dd | 663 ------------- src/utils.cpp | 17 src/utils.dd | 671 -------------- tests/testthat/_snaps/error-handling.md | 2 tests/testthat/_snaps/sql.md | 7 tests/testthat/test-backend-dbplyr__duckdb_connection.R | 31 25 files changed, 107 insertions(+), 8960 deletions(-)