Title: Generate Mind Maps
Description: Convert Markdown ('.md') or R Markdown ('.Rmd') texts, R scripts, directory structures, and other hierarchical structured documents into mind map widgets or 'Freemind' codes or 'Mermaid' mind map codes, and vice versa. 'Freemind' mind map ('.mm') files can be opened by or imported to common mind map software such as 'Freemind' (<https://freemind.sourceforge.io/wiki/index.php/Main_Page>). 'Mermaid' mind map codes (<https://mermaid.js.org/>) can be directly embedded in documents.
Author: Peng Zhao [aut, cre]
Maintainer: Peng Zhao <pengzhao20@outlook.com>
This is a re-admission after prior archival of version 1.3.2 dated 2021-11-22
Diff between mindr versions 1.3.2 dated 2021-11-22 and 1.4.1 dated 2025-12-19
DESCRIPTION | 32 +++-- MD5 | 52 ++++---- NAMESPACE | 19 --- R/experimental.R |only R/individual.R | 168 +++++---------------------- R/internal.R | 31 +++- R/wrapper.R | 317 ++++----------------------------------------------- build |only inst/doc |only man/dir2md.Rd | 11 - man/dir2mm.Rd | 12 - man/dir2r.Rd | 12 - man/get_mmdshape.Rd |only man/markmap.Rd | 32 ----- man/markmapOption.Rd | 18 -- man/md2dir.Rd | 18 -- man/md2mm.Rd | 13 -- man/md2mmd.Rd |only man/md2r.Rd | 11 - man/mm.Rd | 220 ++--------------------------------- man/mm2dir.Rd | 10 - man/mm2md.Rd | 11 - man/mm2r.Rd | 11 - man/mmm.Rd |only man/outline.Rd | 7 - man/outline_pdf.Rd |only man/r2dir.Rd | 10 - man/r2md.Rd | 11 - man/r2mm.Rd | 11 - vignettes |only 30 files changed, 162 insertions(+), 875 deletions(-)
Title: Calculate Estimates in Models with Interaction
Description: A tool to calculate and plot estimates from models
in which an interaction between the main predictor and a continuous covariate has been specified.
Methods used in the package refer to Harrell Jr FE (2015, ISBN:9783319330396);
Durrleman S, Simon R. (1989) <doi:10.1002/sim.4780080504>; Greenland S. (1995) <doi:10.1097/00001648-199507000-00005>.
Author: Giorgio Melloni [aut, cre] ,
Andrea Bellavia [aut] ,
Hong Xiong [aut]
Maintainer: Giorgio Melloni <melloni.giorgio@gmail.com>
Diff between interactionRCS versions 0.1.1 dated 2023-11-21 and 0.1.2 dated 2025-12-19
interactionRCS-0.1.1/interactionRCS/inst/extdata/vignette_files |only interactionRCS-0.1.2/interactionRCS/DESCRIPTION | 19 interactionRCS-0.1.2/interactionRCS/MD5 | 40 interactionRCS-0.1.2/interactionRCS/NAMESPACE | 3 interactionRCS-0.1.2/interactionRCS/R/hrcubspline.R | 5 interactionRCS-0.1.2/interactionRCS/R/hrspline.R | 5 interactionRCS-0.1.2/interactionRCS/R/lincubspline.R | 5 interactionRCS-0.1.2/interactionRCS/R/lininter.R | 5 interactionRCS-0.1.2/interactionRCS/R/orcubspline.R | 5 interactionRCS-0.1.2/interactionRCS/R/orspline.R | 5 interactionRCS-0.1.2/interactionRCS/R/umaru.R | 2 interactionRCS-0.1.2/interactionRCS/R/wrapper_int.R | 4 interactionRCS-0.1.2/interactionRCS/README.md | 4 interactionRCS-0.1.2/interactionRCS/build/vignette.rds |binary interactionRCS-0.1.2/interactionRCS/inst/doc/vignette.R | 10 interactionRCS-0.1.2/interactionRCS/inst/doc/vignette.html | 28 interactionRCS-0.1.2/interactionRCS/inst/extdata/vignette.html | 1753 +++++++++- interactionRCS-0.1.2/interactionRCS/man/umaru.Rd | 2 18 files changed, 1657 insertions(+), 238 deletions(-)
More information about interactionRCS at CRAN
Permanent link
Title: Non-Interactive Spatial Tools for Raster Processing and
Visualization
Description: S3 classes and methods for manipulation with georeferenced raster data: reading/writing, processing, multi-panel visualization.
Author: Nikita Platonov [aut, cre]
Maintainer: Nikita Platonov <platonov@sev-in.ru>
Diff between ursa versions 3.11.4 dated 2025-02-20 and 3.11.5 dated 2025-12-19
DESCRIPTION | 21 +- MD5 | 258 ++++++++++++++++----------------- NAMESPACE | 3 NEWS.md | 24 ++- R/chunk.R | 25 +-- R/classCRS.R | 77 ++++++++- R/classColorTable.R | 14 + R/classConnection.R | 3 R/classGrid.R | 10 + R/classRaster.R | 8 - R/classRaster.Replace.R | 2 R/classRaster_GroupGeneric.R | 2 R/classRaster_as.table.R | 40 ++++- R/classRaster_close.R | 70 +++++++- R/classRaster_head.R | 5 R/classStack.R | 12 + R/colorize.R | 24 ++- R/compose_close.R | 20 ++ R/compose_design.R | 21 ++ R/compose_open.R | 69 ++++++-- R/compose_panel.R | 46 +++++ R/conn.open_envi.R | 72 ++++++++- R/conn.open_gdal.R | 2 R/conn.write_gdal.R | 7 R/cubehelix.R | 35 +++- R/display.R | 1 R/envi_files.R | 27 ++- R/get_earthdata.R | 20 +- R/glance.R | 27 ++- R/identify.R | 96 +++++++----- R/package_raster.R | 4 R/package_sf.R | 1 R/panel_coastline.R | 20 +- R/panel_graticule.R | 44 ++++- R/panel_new.R | 13 + R/panel_plot.R | 26 ++- R/panel_raster.R | 43 +++++ R/regrid.R | 60 +++++-- R/session.R | 7 R/spatial_engine.R | 159 +++++++++++++++++--- R/spatial_write.R | 155 +++++++++++++++---- R/trackline.R | 36 +++- R/ursa_000.R | 2 R/ursa_as.R | 2 R/ursa_blank.R | 14 - R/ursa_cache.R | 2 R/ursa_crop.R | 2 R/ursa_crs.R | 12 + R/ursa_grid.R | 7 R/ursa_match.R |only R/ursa_new.R | 12 + R/xxx.gdal_rasterize.R | 41 +++-- R/xxx.gdalwarp.R | 3 R/xxx.geomap.R | 59 +++++-- R/xxx.ncdf.R | 63 +++++--- R/xxx.panel_basemap.R | 2 R/xxx.panel_cluster.R | 33 +++- R/xxx.spatialize.R | 304 +++++++++++++++++++++++++++++---------- R/yyy.cache.R | 13 + R/yyy.connection.R | 10 + R/yyy.plot.R | 7 R/yyy.project.R | 43 +++++ R/yyy.syno.R | 6 R/yyy.tile.R | 26 ++- R/yyy.util.R | 31 +++ inst/requisite/browseURL.html | 14 + inst/requisite/coast-l.rds |binary man/00ursa-package.Rd | 2 man/Ops.band_group.Rd | 2 man/Ops.focal_extrem.Rd | 2 man/Ops.focal_median.Rd | 2 man/Ops.local_stat.Rd | 2 man/Ops.zonal_stat.Rd | 2 man/chunk.Rd | 9 - man/classColorTable.Rd | 9 + man/classRaster.Rd | 2 man/classRaster.Replace.Rd | 2 man/classRaster_as.array.Rd | 2 man/classRaster_as.integer.Rd | 2 man/classRaster_as.matrix.Rd | 2 man/classRaster_as.raster.Rd | 2 man/classRaster_close.Rd | 2 man/classRaster_commonGeneric.Rd | 2 man/classRaster_dim.Rd | 2 man/classRaster_head.Rd | 2 man/classRaster_hist.Rd | 2 man/classRaster_na.omit.Rd | 2 man/classRaster_plot.Rd | 2 man/classRaster_rep.Rd | 2 man/classRaster_seq.Rd | 2 man/classValue.Rd | 2 man/colorize.Rd | 2 man/compose_legend.Rd | 2 man/compose_plot.Rd | 2 man/conn.open_envi.Rd | 2 man/conn.read_envi.Rd | 2 man/conn.read_gdal.Rd | 2 man/conn.write_gdal.Rd | 2 man/cubehelix.Rd | 7 man/discolor.Rd | 2 man/display.Rd | 2 man/display_brick.Rd | 2 man/envi_files.Rd | 2 man/glance.Rd | 2 man/ignorevalue.Rd | 2 man/legend_colorbar.Rd | 2 man/legend_mtext.Rd | 2 man/panel_annotation.Rd | 2 man/panel_graticule.Rd | 2 man/panel_plot.Rd | 2 man/panel_shading.Rd | 2 man/pixelsize.Rd | 2 man/polygonize.Rd | 2 man/reclass.Rd | 2 man/regrid.Rd | 5 man/spatial_engine.Rd | 6 man/spatial_levelsplit.Rd | 2 man/spatial_read.Rd | 2 man/spatial_write.Rd | 16 +- man/temporal_interpolate.Rd | 2 man/ursa_000.Rd | 2 man/ursa_cache.Rd | 4 man/ursa_crop.Rd | 2 man/ursa_dummy.Rd | 2 man/ursa_grid.Rd | 2 man/ursa_info.Rd | 2 man/ursa_match.Rd |only man/whiteboxing.Rd | 2 src/init.c | 268 +++++++++++++++++----------------- src/ursa.c | 29 +++ src/ursa.h | 126 ++++++++-------- 131 files changed, 2066 insertions(+), 836 deletions(-)
Title: Fast Data Summary Reports
Description: Generates an RMarkdown data report with two components:
a summary of an input dataset and a diff of the dataset relative to an old version.
Author: Bryant Cong [aut, cre],
Alex Gordon [aut]
Maintainer: Bryant Cong <bryant.bcp@gmail.com>
Diff between datareportR versions 0.1.1 dated 2025-10-20 and 0.1.2 dated 2025-12-19
DESCRIPTION | 19 ++++++++++++------- MD5 | 11 ++++++++--- NAMESPACE | 13 +++++++------ README.md | 2 +- build |only inst |only vignettes |only 7 files changed, 28 insertions(+), 17 deletions(-)
Title: Clinical Trial Simulator
Description: Simulate phase II and/or phase III clinical trials. It supports various types of endpoints and adaptive strategies. Tools for carrying out graphical testing procedure and combination test under group sequential design are also provided.
Author: Han Zhang [cre, aut]
Maintainer: Han Zhang <zhangh.ustc@gmail.com>
Diff between TrialSimulator versions 1.3.0 dated 2025-09-26 and 1.7.0 dated 2025-12-19
TrialSimulator-1.3.0/TrialSimulator/R/arm.R |only TrialSimulator-1.3.0/TrialSimulator/R/controller.R |only TrialSimulator-1.3.0/TrialSimulator/R/endpoint.R |only TrialSimulator-1.3.0/TrialSimulator/R/listener.R |only TrialSimulator-1.3.0/TrialSimulator/R/trial.R |only TrialSimulator-1.7.0/TrialSimulator/DESCRIPTION | 6 TrialSimulator-1.7.0/TrialSimulator/MD5 | 82 ++-- TrialSimulator-1.7.0/TrialSimulator/NEWS.md | 28 + TrialSimulator-1.7.0/TrialSimulator/R/Arm.R |only TrialSimulator-1.7.0/TrialSimulator/R/Arms.R | 14 TrialSimulator-1.7.0/TrialSimulator/R/Controller.R |only TrialSimulator-1.7.0/TrialSimulator/R/Controllers.R | 30 + TrialSimulator-1.7.0/TrialSimulator/R/Endpoint.R |only TrialSimulator-1.7.0/TrialSimulator/R/Endpoints.R | 16 TrialSimulator-1.7.0/TrialSimulator/R/Listener.R |only TrialSimulator-1.7.0/TrialSimulator/R/Trial.R |only TrialSimulator-1.7.0/TrialSimulator/R/Trials.R | 103 +++++ TrialSimulator-1.7.0/TrialSimulator/README.md | 22 - TrialSimulator-1.7.0/TrialSimulator/build/vignette.rds |binary TrialSimulator-1.7.0/TrialSimulator/inst/doc/actionFunctions.Rmd | 41 +- TrialSimulator-1.7.0/TrialSimulator/inst/doc/actionFunctions.html | 20 - TrialSimulator-1.7.0/TrialSimulator/inst/doc/adaptiveDesign.html | 4 TrialSimulator-1.7.0/TrialSimulator/inst/doc/defineLongitudinalEndpoints.Rmd | 2 TrialSimulator-1.7.0/TrialSimulator/inst/doc/defineLongitudinalEndpoints.html | 5 TrialSimulator-1.7.0/TrialSimulator/inst/doc/defineNonTimeToEventEndpoints.html | 4 TrialSimulator-1.7.0/TrialSimulator/inst/doc/defineTimeToEventEndpoints.html | 19 - TrialSimulator-1.7.0/TrialSimulator/inst/doc/doseRanging.R |only TrialSimulator-1.7.0/TrialSimulator/inst/doc/doseRanging.Rmd |only TrialSimulator-1.7.0/TrialSimulator/inst/doc/doseRanging.html |only TrialSimulator-1.7.0/TrialSimulator/inst/doc/responseAdaptive.R | 87 ++-- TrialSimulator-1.7.0/TrialSimulator/inst/doc/responseAdaptive.Rmd | 83 ---- TrialSimulator-1.7.0/TrialSimulator/inst/doc/responseAdaptive.html | 33 - TrialSimulator-1.7.0/TrialSimulator/inst/doc/simulatePfsAndOs.Rmd | 2 TrialSimulator-1.7.0/TrialSimulator/inst/doc/simulatePfsAndOs.html | 6 TrialSimulator-1.7.0/TrialSimulator/man/Arms.Rd | 24 + TrialSimulator-1.7.0/TrialSimulator/man/Controllers.Rd | 24 + TrialSimulator-1.7.0/TrialSimulator/man/Endpoints.Rd | 21 + TrialSimulator-1.7.0/TrialSimulator/man/Trials.Rd | 50 ++ TrialSimulator-1.7.0/TrialSimulator/man/arm.Rd | 2 TrialSimulator-1.7.0/TrialSimulator/man/controller.Rd | 2 TrialSimulator-1.7.0/TrialSimulator/man/endpoint.Rd | 2 TrialSimulator-1.7.0/TrialSimulator/man/listener.Rd | 2 TrialSimulator-1.7.0/TrialSimulator/man/trial.Rd | 2 TrialSimulator-1.7.0/TrialSimulator/tests/testthat/test-trial.R | 180 ++++++++++ TrialSimulator-1.7.0/TrialSimulator/vignettes/actionFunctions.Rmd | 41 +- TrialSimulator-1.7.0/TrialSimulator/vignettes/defineLongitudinalEndpoints.Rmd | 2 TrialSimulator-1.7.0/TrialSimulator/vignettes/doseRanging.Rmd |only TrialSimulator-1.7.0/TrialSimulator/vignettes/responseAdaptive.Rmd | 83 ---- TrialSimulator-1.7.0/TrialSimulator/vignettes/simulatePfsAndOs.Rmd | 2 49 files changed, 709 insertions(+), 335 deletions(-)
More information about TrialSimulator at CRAN
Permanent link
Title: Identify Mutually Exclusive Mutations
Description: An optimized method for identifying mutually
exclusive genomic events. Its main contribution is a
statistical analysis based on the Poisson-Binomial
distribution that takes into account that some samples
are more mutated than others. See [Canisius, Sander, John WM Martens,
and Lodewyk FA Wessels. (2016) "A novel independence test for
somatic alterations in cancer shows that
biology drives mutual exclusivity but chance explains
most co-occurrence." Genome biology 17.1 : 1-17. <doi:10.1186/s13059-016-1114-x>].
The mutations matrices are sparse matrices. The method developed takes
advantage of the advantages of this type of matrix to save
time and computing resources.
Author: Juan A. Ferrer-Bonsoms [aut, cre],
Laura Jareno [aut],
Angel Rubio [aut]
Maintainer: Juan A. Ferrer-Bonsoms <jafhernandez@tecnun.es>
This is a re-admission after prior archival of version 0.3.2 dated 2023-04-14
Diff between Rediscover versions 0.3.2 dated 2023-04-14 and 0.3.3 dated 2025-12-19
Rediscover-0.3.2/Rediscover/tests/runTests.R |only Rediscover-0.3.3/Rediscover/DESCRIPTION | 26 ++ Rediscover-0.3.3/Rediscover/MD5 | 23 +- Rediscover-0.3.3/Rediscover/NEWS.md | 4 Rediscover-0.3.3/Rediscover/R/discoversomaticInteractions.R | 7 Rediscover-0.3.3/Rediscover/R/getMutex.R | 3 Rediscover-0.3.3/Rediscover/R/getMutexAB.R | 2 Rediscover-0.3.3/Rediscover/build/vignette.rds |binary Rediscover-0.3.3/Rediscover/inst/doc/Rediscover.R | 16 - Rediscover-0.3.3/Rediscover/inst/doc/Rediscover.html | 105 ++++++++---- Rediscover-0.3.3/Rediscover/tests/testthat |only Rediscover-0.3.3/Rediscover/tests/testthat.R |only 12 files changed, 125 insertions(+), 61 deletions(-)
Title: Generates Raven-Like Matrices According to Rules
Description: Generates Raven like matrices according to different rules and the response list associated to the matrix.
The package can generate matrices composed of 4 or 9 cells, along with a response list of 11 elements (the correct response + 10 incorrect responses). The matrices can be generated according to both logical rules (i.e., the relationships between the elements in the matrix are manipulated to create the matrix) and visual-spatial rules (i.e., the visual or spatial characteristics of the elements are manipulated to generate the matrix).
The graphical elements of this package are based on the 'DescTools' package.
This package has been developed within the PRIN2020 Project (Prot. 20209WKCLL) titled "Computerized, Adaptive and Personalized Assessment of Executive Functions and Fluid Intelligence" and founded by the Italian Ministry of Education and Research.
Author: Andrea Brancaccio [aut, ctb, cph, cre],
Ottavia M. Epifania [aut, ctb, com],
Debora de Chiusole [ctb]
Maintainer: Andrea Brancaccio <andreabrancaccio01@gmail.com>
Diff between matRiks versions 0.1.4 dated 2025-12-19 and 0.1.5 dated 2025-12-19
DESCRIPTION | 9 +++++---- MD5 | 10 +++++----- NEWS.md | 4 ++-- R/draw.R | 13 ++++++++----- inst/doc/generate_matriks.html | 8 ++++---- man/draw.Rd | 3 +++ 6 files changed, 27 insertions(+), 20 deletions(-)
Title: Electric Vehicle Charging Sessions Simulation
Description: Simulation of Electric Vehicles charging sessions using Gaussian models, together with time-series power demand calculations.
Author: Marc Canigueral [aut, cre, cph]
Maintainer: Marc Canigueral <marccanyigueral@gmail.com>
Diff between evsim versions 1.7.0 dated 2025-10-08 and 1.7.1 dated 2025-12-19
evsim-1.7.0/evsim/inst |only evsim-1.7.0/evsim/man/plot_ts.Rd |only evsim-1.7.1/evsim/DESCRIPTION | 10 +- evsim-1.7.1/evsim/MD5 | 20 ++-- evsim-1.7.1/evsim/NAMESPACE | 5 - evsim-1.7.1/evsim/NEWS.md | 8 + evsim-1.7.1/evsim/R/demand.R | 65 +-------------- evsim-1.7.1/evsim/R/simulation.R | 4 evsim-1.7.1/evsim/man/estimate_connection.Rd | 2 evsim-1.7.1/evsim/man/get_charging_rates_distribution.Rd | 2 evsim-1.7.1/evsim/man/get_demand.Rd | 4 evsim-1.7.1/evsim/man/get_occupancy.Rd | 6 - 12 files changed, 35 insertions(+), 91 deletions(-)
Title: Exploration and Visualisation of Skeletal Transcriptomics Data
Description: Allows search and visualisation of a collection of uniformly processed skeletal transcriptomic datasets. Includes methods to identify datasets where genes of interest are differentially expressed and find datasets with a similar gene expression pattern to a query dataset Soul J, Hardingham TE, Boot-Handford RP, Schwartz JM (2019) <doi:10.1093/bioinformatics/bty947>.
Author: Jamie Soul [aut, cre, cph]
Maintainer: Jamie Soul <jamie.soul@liverpool.ac.uk>
Diff between SkeletalVis versions 0.1.1 dated 2025-05-06 and 0.1.2 dated 2025-12-19
DESCRIPTION | 6 - MD5 | 21 +++--- NEWS.md | 5 + R/load_skeletalvis.R | 108 ++++++++++++++++++++++++++------- README.md | 29 +++++--- build/partial.rdb |only build/vignette.rds |binary inst/doc/SkeletalVis.R | 10 +-- man/SkeletalVis-package.Rd | 2 man/figures/README-plotting-1.png |binary man/load_skeletalvis.Rd | 9 ++ tests/testthat/test-load_skeletalvis.R | 33 ++++++++++ 12 files changed, 170 insertions(+), 53 deletions(-)
Title: Fast Algorithms for Robust Slopes
Description: Fast algorithms for the Theil-Sen estimator,
Siegel's repeated median slope estimator, and Passing-Bablok regression.
The implementation is based on algorithms by
Dillencourt et. al (1992) <doi:10.1142/S0218195992000020> and Matousek et. al (1998) <doi:10.1007/PL00009190>.
The implementations are detailed in
Raymaekers (2023) <doi:10.32614/RJ-2023-012> and
Raymaekers J., Dufey F. (2022) <doi:10.48550/arXiv.2202.08060>.
All algorithms run in quasilinear time.
Author: Jakob Raymaekers [aut, cre]
Maintainer: Jakob Raymaekers <jakob.raymaekers@uantwerpen.be>
Diff between robslopes versions 1.1.3 dated 2023-04-27 and 1.1.4 dated 2025-12-19
DESCRIPTION | 19 ++++++++++++------- MD5 | 10 +++++----- src/HelpFunctions.cpp | 6 +++--- src/rcpparma_Passing_Bablok.cpp | 2 +- src/rcpparma_Theil_Sen.cpp | 2 +- src/rcpparma_repeated_median.cpp | 6 +++--- 6 files changed, 25 insertions(+), 20 deletions(-)
Title: Time Series Forecasting Functions
Description: Fundamental time series forecasting models such as autoregressive integrated moving average (ARIMA), exponential smoothing, and simple moving average are included. For ARIMA models, the output follows the traditional parameterisation by Box and Jenkins (1970, ISBN: 0816210942, 9780816210947). Furthermore, there are functions for detailed time series exploration and decomposition, respectively. All data and result visualisations are generated by 'ggplot2' instead of conventional R graphical output. For more details regarding the theoretical background of the models see Hyndman, R.J. and Athanasopoulos, G. (2021) <https://otexts.com/fpp3/>.
Author: Ka Yui Karl Wu [aut, cre]
Maintainer: Ka Yui Karl Wu <karlwuky@suss.edu.sg>
Diff between tsforecast versions 1.2.0 dated 2025-12-15 and 1.2.1 dated 2025-12-19
tsforecast-1.2.0/tsforecast/R/tsforecast_1.2.0.R |only tsforecast-1.2.1/tsforecast/DESCRIPTION | 6 +-- tsforecast-1.2.1/tsforecast/MD5 | 46 +++++++++++------------ tsforecast-1.2.1/tsforecast/R/tsforecast_1.2.1.R |only tsforecast-1.2.1/tsforecast/man/airport.Rd | 2 - tsforecast-1.2.1/tsforecast/man/is.outlier.Rd | 2 - tsforecast-1.2.1/tsforecast/man/predict.Rd | 2 - tsforecast-1.2.1/tsforecast/man/ts-functions.Rd | 2 - tsforecast-1.2.1/tsforecast/man/tsacf.Rd | 2 - tsforecast-1.2.1/tsforecast/man/tsarima.Rd | 2 - tsforecast-1.2.1/tsforecast/man/tsboxplot.Rd | 2 - tsforecast-1.2.1/tsforecast/man/tsconvert.Rd | 2 - tsforecast-1.2.1/tsforecast/man/tsdecomp.Rd | 2 - tsforecast-1.2.1/tsforecast/man/tsdiff.Rd | 2 - tsforecast-1.2.1/tsforecast/man/tsesm.Rd | 2 - tsforecast-1.2.1/tsforecast/man/tsexplore.Rd | 2 - tsforecast-1.2.1/tsforecast/man/tsforecast.Rd | 2 - tsforecast-1.2.1/tsforecast/man/tshistogram.Rd | 2 - tsforecast-1.2.1/tsforecast/man/tslag.Rd | 2 - tsforecast-1.2.1/tsforecast/man/tslineplot.Rd | 2 - tsforecast-1.2.1/tsforecast/man/tsmltest.Rd | 2 - tsforecast-1.2.1/tsforecast/man/tsmodeleval.Rd | 2 - tsforecast-1.2.1/tsforecast/man/tsmovav.Rd | 2 - tsforecast-1.2.1/tsforecast/man/tsqqplot.Rd | 2 - tsforecast-1.2.1/tsforecast/man/tsscatterplot.Rd | 2 - 25 files changed, 47 insertions(+), 47 deletions(-)
Title: Density, Distribution, and Sampling Functions for Evidence
Accumulation Models
Description: Calculate the probability density functions (PDFs) for two threshold evidence
accumulation models (EAMs). These are defined using the following Stochastic
Differential Equation (SDE), dx(t) = v(x(t),t)*dt+D(x(t),t)*dW, where x(t) is
the accumulated evidence at time t, v(x(t),t) is the drift rate, D(x(t),t) is
the noise scale, and W is the standard Wiener process. The boundary conditions
of this process are the upper and lower decision thresholds, represented by b_u(t)
and b_l(t), respectively. Upper threshold b_u(t) > 0, while lower threshold b_l(t) < 0.
The initial condition of this process x(0) = z where b_l(t) < z < b_u(t). We
represent this as the relative start point w = z/(b_u(0)-b_l(0)), defined as
a ratio of the initial threshold location. This package generates the PDF using
the same approach as the 'python' package it is based upon, 'PyBEAM' by Murrow and Holmes
(2023) <doi:10.3758/s13428-023-02162-w>. First, it converts the SDE model into the
forwards Fokke [...truncated...]
Author: Raphael Hartmann [aut, cre] ,
Matthew Murrow [aut]
Maintainer: Raphael Hartmann <raphael.hartmann@protonmail.com>
Diff between ream versions 1.0-9 dated 2025-12-18 and 1.0-10 dated 2025-12-19
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- inst/doc/guideline.html | 4 ++-- src/R_wrapper.cpp | 4 ++-- src/ream_init.c | 6 +++--- 5 files changed, 14 insertions(+), 14 deletions(-)
Title: Panel Evaluation in Forensic Kinship Analysis
Description: Evaluate specific panels in different aspects: i) Simulation tools related to pedigree researches; ii) calculation for systemic effectiveness indicators, such as probability of exclusion (PE).
Author: Guanju Ma [aut, cre],
Shujin Li [ctb]
Maintainer: Guanju Ma <guanjuma@hebmu.edu.cn>
Diff between KINSIMU versions 0.1.2-2 dated 2024-06-13 and 0.1.3 dated 2025-12-19
DESCRIPTION | 14 ++-- MD5 | 42 ++++++------ NEWS.md | 10 ++ R/EvaluatePanel.R | 2 R/IICAL.R | 5 + R/LRgpgcam.R | 5 + R/LRhsip.R | 5 + R/LRparas.R | 6 + R/logLR.R | 11 ++- R/pedisimu.R | 2 R/testsimulation.R | 2 R/trioPI.R | 2 build/vignette.rds |binary inst/doc/Instruction_of_functions_of_R_package_KINSIMU.Rnw | 7 +- inst/doc/Instruction_of_functions_of_R_package_KINSIMU.pdf |binary man/IICAL.Rd | 2 man/LRgpgcam.Rd | 2 man/LRhsip.Rd | 2 man/LRparas.Rd | 3 man/logLR.Rd | 2 man/testsimulation.Rd | 2 vignettes/Instruction_of_functions_of_R_package_KINSIMU.Rnw | 7 +- 22 files changed, 83 insertions(+), 50 deletions(-)
Title: Grouped Date Classes
Description: Provides a coherent interface and implementation for creating
grouped date classes.
Author: Tim Taylor [aut, cre]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between grates versions 1.7.0 dated 2025-11-21 and 1.7.1 dated 2025-12-19
DESCRIPTION | 7 +++---- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/period-class.R | 2 +- tests/testthat/test-period.R | 2 -- 5 files changed, 13 insertions(+), 11 deletions(-)
Title: Rmetrics - Modelling Trends and Unit Roots
Description: Provides four addons for analyzing trends and
unit roots in financial time series: (i) functions for the density
and probability of the augmented Dickey-Fuller Test, (ii) functions
for the density and probability of MacKinnon's unit root test
statistics, (iii) reimplementations for the ADF and MacKinnon
Test, and (iv) an 'urca' Unit Root Test Interface for Pfaff's
unit root test suite.
Author: Diethelm Wuertz [aut] ,
Tobias Setz [aut],
Yohan Chalabi [aut],
Georgi N. Boshnakov [cre]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between fUnitRoots versions 4040.81 dated 2024-05-15 and 4052.82 dated 2025-12-19
DESCRIPTION | 22 +-- MD5 | 14 +- NEWS.md | 9 + inst/_pkgdown.yml |only inst/pkgdown.yml |only man/DickeyFullerPValues.Rd | 137 ++++++++++----------- man/MacKinnonPValues.Rd | 160 +++++++++++------------- man/UnitrootTests.Rd | 182 +++++++++++----------------- man/UnitrootUrcaInterface.Rd | 276 +++++++++++++++++++------------------------ 9 files changed, 366 insertions(+), 434 deletions(-)
Title: Clinical Publication
Description: Accelerate the process from clinical data to medical publication,
including clinical data cleaning, significant result screening, and the
generation of publish-ready tables and figures.
Author: Yue Niu [aut, cre, cph] ,
Keyun Wang [aut]
Maintainer: Yue Niu <niuyuesam@163.com>
Diff between clinpubr versions 1.1.0 dated 2025-10-30 and 1.1.1 dated 2025-12-19
DESCRIPTION | 13 MD5 | 62 +- NAMESPACE | 4 NEWS.md | 18 R/baseline_table.R | 41 - R/check_nonnum.R | 3 R/classif_model_compare.R | 4 R/extract_num.R | 9 R/initial_cleaning.R | 12 R/misc.R | 14 R/regressions.R | 2 R/subject_standardize.R | 2 R/time_roc.R |only R/unit_standardize.R | 33 + R/utils.R | 4 README.md | 10 man/baseline_table.Rd | 2 man/calc_cindex.Rd |only man/df_view_nonnum.Rd | 2 man/figures/README-example_3.7-2.png |binary man/figures/README-example_3.7-3.png |binary man/figures/README-example_3.7-4.png |only man/time_roc_plot.Rd |only man/unit_standardize.Rd | 32 - man/value_initial_cleaning.Rd | 5 man/vec2code.Rd | 10 tests/testthat/_snaps/classif_model_compare.md | 20 tests/testthat/_snaps/classif_model_compare/pr-plot.svg | 5 tests/testthat/_snaps/interactions.md | 54 +- tests/testthat/_snaps/rcs_plot.md | 80 +-- tests/testthat/_snaps/regressions.md | 372 ++++++++-------- tests/testthat/_snaps/time_roc |only tests/testthat/test-misc.R | 8 tests/testthat/test-time_roc.R |only 34 files changed, 466 insertions(+), 355 deletions(-)
Title: Causal Inference with Continuous (Multiple Time Point)
Interventions
Description: Estimation of counterfactual outcomes for multiple values of continuous interventions at different time points, and plotting of causal dose-response curves. Details are given in Schomaker, McIlleron, Denti, Diaz (2024) <doi:10.48550/arXiv.2305.06645>.
Author: Michael Schomaker [aut, cre],
Leo Fuhrhop [ctb],
Han Bao [ctb]
Maintainer: Michael Schomaker <michael.schomaker@stat.uni-muenchen.de>
Diff between CICI versions 0.9.6 dated 2025-07-21 and 0.9.7 dated 2025-12-19
CICI-0.9.6/CICI/R/contrast.R |only CICI-0.9.6/CICI/R/print.contrastResult.R |only CICI-0.9.7/CICI/DESCRIPTION | 19 - CICI-0.9.7/CICI/MD5 | 34 +- CICI-0.9.7/CICI/NAMESPACE | 23 + CICI-0.9.7/CICI/R/contrast.r |only CICI-0.9.7/CICI/R/custom.measure.r | 67 ++-- CICI-0.9.7/CICI/R/feasible.r |only CICI-0.9.7/CICI/R/gformula.r | 97 +++--- CICI-0.9.7/CICI/R/helper.r | 470 ++++++++++++++++++++++++++++++- CICI-0.9.7/CICI/R/mi.boot.r | 108 +++++-- CICI-0.9.7/CICI/R/plot.feasible.r |only CICI-0.9.7/CICI/R/plot.gformula.r | 26 - CICI-0.9.7/CICI/R/print.contrastResult.r |only CICI-0.9.7/CICI/R/print.feasible.R |only CICI-0.9.7/CICI/R/summary.feasible.R |only CICI-0.9.7/CICI/man/CICI-package.Rd | 7 CICI-0.9.7/CICI/man/custom.measure.Rd | 4 CICI-0.9.7/CICI/man/feasible.Rd |only CICI-0.9.7/CICI/man/gformula.Rd | 5 CICI-0.9.7/CICI/man/mi.boot.Rd | 3 CICI-0.9.7/CICI/man/plot.feasible.Rd |only CICI-0.9.7/CICI/man/print.feasible.Rd |only CICI-0.9.7/CICI/man/summary.feasible.Rd |only 24 files changed, 716 insertions(+), 147 deletions(-)
Title: Miscellaneous Statistical Functions Used in 'guide-R'
Description: Companion package for the manual
'guide-R : Guide pour l’analyse de données d’enquêtes avec R' available at
<https://larmarange.github.io/guide-R/>. 'guideR' implements miscellaneous
functions introduced in 'guide-R' to facilitate statistical analysis and
manipulation of survey data.
Author: Joseph Larmarange [aut, cre]
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between guideR versions 0.8.0 dated 2025-12-10 and 0.8.1 dated 2025-12-19
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 12 ++++++++++++ R/combine_answers.R | 17 +++++++++++++++++ R/gtsummary_themes.R | 8 ++++---- R/plot_multiple_answers.R | 6 ++++-- R/plot_trajectories.R | 3 ++- man/combine_answers.Rd | 5 +++++ tests/testthat/test-plot_multiple_answers.R | 28 +++++++++++++++++++++++++++- 9 files changed, 82 insertions(+), 19 deletions(-)
Title: Build a Metric Subspaces Data Model for a Data Source
Description: Neural networks are applied to create a density value function which approximates density values for a data source. The trained neural network is analyzed for different levels. For each level metric subspaces with density values above a level are determined. The obtained set of metric subspaces and the trained neural network are assembled into a data model. A prerequisite is the definition of a data source, the generation of generative data and the calculation of density values. These tasks are executed using package 'ganGenerativeData' <https://cran.r-project.org/package=ganGenerativeData>.
Author: Werner Mueller [aut, cre]
Maintainer: Werner Mueller <werner.mueller5@chello.at>
Diff between ganDataModel versions 1.1.7 dated 2024-07-21 and 2.0.1 dated 2025-12-19
DESCRIPTION | 13 - MD5 | 37 ++-- R/RcppExports.R | 26 ++ R/dmBuildMetricSubspaces.R | 51 ++--- R/dmEvaluate.R | 118 +++++------- R/dmPlotMetricSubspaces.R | 86 ++++----- R/dmTrain.R | 230 +++++++++++++++--------- R/keras_zip_lists.R |only man/dmBuildMetricSubspaces.Rd | 2 man/dmCalculateDensityValue.Rd | 2 man/dmGetContainedInMetricSubspaces.Rd | 2 man/dmPlotMetricSubspaceParameters.Rd | 2 man/dmPlotMetricSubspaces.Rd | 4 man/dmRemoveMetricSubspaces.Rd | 2 man/dmTrain.Rd | 7 man/ganDataModel-package.Rd | 37 ++-- src/RcppExports.cpp | 73 +++++++ src/dataModel.h | 107 +++++++---- src/dmInt.cpp | 273 +++++++++++++++++++---------- src/volumeElementGraph.h | 305 ++++++++++++++++++--------------- 20 files changed, 834 insertions(+), 543 deletions(-)
Title: qPCR Data Analysis
Description: Amplification efficiency estimation, statistical analysis, and graphical representation of quantitative real-time PCR (qPCR) data using one or more specified reference genes is handled by 'rtpcr' package. By accounting for amplification efficiency values, 'rtpcr' was developed using a general calculation method described by Ganger et al. (2017) <doi:10.1186/s12859-017-1949-5> and Taylor et al. (2019) <doi:10.1016/j.tibtech.2018.12.002>, covering both the Livak and Pfaffl methods. Based on the experimental conditions, the functions of the 'rtpcr' package use t-test (for experiments with a two-level factor), analysis of variance (ANOVA), analysis of covariance (ANCOVA) or analysis of repeated measure data to analyse the relative expression (Delta Delta Ct method or Delta Ct method). The functions further provide standard errors and confidence intervals for means, apply statistical mean comparisons and present significance.
Author: Ghader Mirzaghaderi [aut, cre, cph]
Maintainer: Ghader Mirzaghaderi <gh.mirzaghaderi@uok.ac.ir>
Diff between rtpcr versions 2.0.5 dated 2025-12-12 and 2.1.0 dated 2025-12-19
rtpcr-2.0.5/rtpcr/data/Taylor_etal2019.rda |only rtpcr-2.0.5/rtpcr/data/data_ttest.rda |only rtpcr-2.0.5/rtpcr/inst/extdata/Taylor_etal2019.csv |only rtpcr-2.0.5/rtpcr/inst/extdata/data_ttest.csv |only rtpcr-2.0.5/rtpcr/man/Taylor_etal2019.Rd |only rtpcr-2.0.5/rtpcr/man/data_ttest.Rd |only rtpcr-2.1.0/rtpcr/DESCRIPTION | 8 rtpcr-2.1.0/rtpcr/MD5 | 108 - rtpcr-2.1.0/rtpcr/R/ANOVA_DCt.r | 266 +-- rtpcr-2.1.0/rtpcr/R/ANOVA_DDCt.r | 383 ++--- rtpcr-2.1.0/rtpcr/R/Means_DDCt.r | 96 - rtpcr-2.1.0/rtpcr/R/REPEATED_DDCt.r | 349 ++-- rtpcr-2.1.0/rtpcr/R/TTEST_DDCt.r | 527 ++++--- rtpcr-2.1.0/rtpcr/R/efficiency.r | 50 rtpcr-2.1.0/rtpcr/R/globalVariables.r | 5 rtpcr-2.1.0/rtpcr/R/meanTech.r | 48 rtpcr-2.1.0/rtpcr/R/multiplot.r | 77 - rtpcr-2.1.0/rtpcr/R/package_data.r | 112 + rtpcr-2.1.0/rtpcr/R/plotOneFactor.r | 174 +- rtpcr-2.1.0/rtpcr/R/plotThreeFactor.r | 256 ++- rtpcr-2.1.0/rtpcr/R/plotTwoFactor.r | 264 ++- rtpcr-2.1.0/rtpcr/R/qpcrhlpr.r | 216 ++ rtpcr-2.1.0/rtpcr/data/data_1factor_Two_ref.rda |only rtpcr-2.1.0/rtpcr/data/data_1factor_one_ref.rda |only rtpcr-2.1.0/rtpcr/data/data_1factor_one_ref_Eff.rda |only rtpcr-2.1.0/rtpcr/data/data_2factor3ref.rda |only rtpcr-2.1.0/rtpcr/data/data_2factorBlock.rda |binary rtpcr-2.1.0/rtpcr/data/data_2factorBlock3ref.rda |only rtpcr-2.1.0/rtpcr/inst/doc/vignette.R | 308 +++- rtpcr-2.1.0/rtpcr/inst/doc/vignette.Rmd | 401 ++++- rtpcr-2.1.0/rtpcr/inst/doc/vignette.html | 865 +++++++++--- rtpcr-2.1.0/rtpcr/inst/extdata/data_1factor_Two_ref.csv |only rtpcr-2.1.0/rtpcr/inst/extdata/data_1factor_one_ref.csv |only rtpcr-2.1.0/rtpcr/inst/extdata/data_1factor_one_ref_Eff.csv |only rtpcr-2.1.0/rtpcr/inst/extdata/data_2factor3ref.csv |only rtpcr-2.1.0/rtpcr/inst/extdata/data_2factorBlock.csv | 36 rtpcr-2.1.0/rtpcr/inst/extdata/data_2factorBlock3ref.csv |only rtpcr-2.1.0/rtpcr/man/ANOVA_DCt.Rd | 115 - rtpcr-2.1.0/rtpcr/man/ANOVA_DDCt.Rd | 201 +- rtpcr-2.1.0/rtpcr/man/Means_DDCt.Rd | 59 rtpcr-2.1.0/rtpcr/man/REPEATED_DDCt.Rd | 98 - rtpcr-2.1.0/rtpcr/man/TTEST_DDCt.Rd | 127 + rtpcr-2.1.0/rtpcr/man/data_1factor.Rd | 2 rtpcr-2.1.0/rtpcr/man/data_1factor_Two_ref.Rd |only rtpcr-2.1.0/rtpcr/man/data_1factor_one_ref.Rd |only rtpcr-2.1.0/rtpcr/man/data_1factor_one_ref_Eff.Rd |only rtpcr-2.1.0/rtpcr/man/data_2factor.Rd | 2 rtpcr-2.1.0/rtpcr/man/data_2factor3ref.Rd |only rtpcr-2.1.0/rtpcr/man/data_2factorBlock.Rd | 2 rtpcr-2.1.0/rtpcr/man/data_2factorBlock3ref.Rd |only rtpcr-2.1.0/rtpcr/man/data_3factor.Rd | 2 rtpcr-2.1.0/rtpcr/man/efficiency.Rd | 34 rtpcr-2.1.0/rtpcr/man/meanTech.Rd | 27 rtpcr-2.1.0/rtpcr/man/multiplot.Rd | 55 rtpcr-2.1.0/rtpcr/man/plotOneFactor.Rd | 78 - rtpcr-2.1.0/rtpcr/man/plotThreeFactor.Rd | 113 + rtpcr-2.1.0/rtpcr/man/plotTwoFactor.Rd | 121 + rtpcr-2.1.0/rtpcr/vignettes/vignette.Rmd | 401 ++++- rtpcr-2.1.0/rtpcr/vignettes/vignette_files |only 59 files changed, 4133 insertions(+), 1853 deletions(-)
Title: Gamma and Exponential Generalized Linear Models with Elastic Net
Penalty
Description: Implements the fast iterative shrinkage-thresholding algorithm
(FISTA) algorithm to fit a Gamma distribution with an elastic net
penalty as described in Chen, Arakvin and Martin (2018)
<doi:10.48550/arXiv.1804.07780>. An implementation for the case of the
exponential distribution is also available, with details available
in Chen and Martin (2018) <doi:10.2139/ssrn.3085672>.
Author: Anthony Christidis [aut, cre],
Xin Chen [aut],
Daniel Hanson [aut]
Maintainer: Anthony Christidis <anthony.christidis@stat.ubc.ca>
This is a re-admission after prior archival of version 1.1.3 dated 2025-03-30
Diff between RPEGLMEN versions 1.1.3 dated 2025-03-30 and 1.1.4 dated 2025-12-19
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 8 +++++++- R/glmGammaNet.R | 27 +++++++++++++++------------ R/glmnet_exp.R | 27 +++++++++++++++------------ man/fit.glmGammaNet.Rd | 26 +++++++++++++++----------- man/glmnet_exp.Rd | 26 +++++++++++++++----------- 7 files changed, 78 insertions(+), 58 deletions(-)
Title: A 'Shiny' App for Reliability Analysis
Description: An interactive web application for reliability analysis using the 'shiny' <https://shiny.posit.co/> framework. The app provides an easy-to-use interface for performing reliability analysis using 'WeibullR' <https://cran.r-project.org/package=WeibullR> and 'ReliaGrowR' <https://cran.r-project.org/package=ReliaGrowR>.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
This is a re-admission after prior archival of version 0.4 dated 2025-11-11
Diff between ReliaShiny versions 0.4 dated 2025-11-11 and 0.4.1 dated 2025-12-19
DESCRIPTION | 9 ++++----- MD5 | 3 ++- inst/paper |only 3 files changed, 6 insertions(+), 6 deletions(-)
Title: A Unified Pipeline for Pupillometry Data
Description: Provides a unified pipeline to clean, prepare, plot,
and run basic analyses on pupillometry experiments.
Author: Samuel Forbes [aut, cre],
David Robinson [ctb]
Maintainer: Samuel Forbes <samuel.h.forbes@gmail.com>
This is a re-admission after prior archival of version 0.0.6 dated 2025-11-10
Diff between PupillometryR versions 0.0.6 dated 2025-11-10 and 0.0.7 dated 2025-12-19
DESCRIPTION | 8 - MD5 | 12 +- README.md | 11 ++ inst/doc/PupillometryR.R | 44 +++++----- inst/doc/PupillometryR.Rmd | 48 ++++++----- inst/doc/PupillometryR.html | 180 +++++++++++++++++++++----------------------- vignettes/PupillometryR.Rmd | 48 ++++++----- 7 files changed, 178 insertions(+), 173 deletions(-)
Title: Data Language Engine for 'knitr' / 'rmarkdown'
Description: Implements a data language engine for incorporating data directly in
'rmarkdown' documents so that they can be made completely standalone.
Author: David M. Kaplan [aut, cre, cph]
Maintainer: David M. Kaplan <dmkaplan2000@gmail.com>
This is a re-admission after prior archival of version 0.6.1 dated 2020-12-08
Diff between knitrdata versions 0.6.1 dated 2020-12-08 and 0.6.2 dated 2025-12-19
DESCRIPTION | 17 MD5 | 26 NEWS.md | 6 R/data_engine.R | 88 + README.md | 5 build/vignette.rds |binary inst/doc/data_language_engine_vignette.Rmd | 2 inst/doc/data_language_engine_vignette.html | 1542 +++++++++++++++++----------- man/create_chunk.Rd | 6 man/create_data_chunk_dialog.Rd | 6 man/data_decode.Rd | 6 man/is.file.binary.Rd | 6 man/list_rmd_chunks.Rd | 12 vignettes/data_language_engine_vignette.Rmd | 2 14 files changed, 1079 insertions(+), 645 deletions(-)
Title: Functionalities for the 'INLA' Package
Description: Contain code to work with a C struct, in short
cgeneric, to define a Gaussian Markov random (GMRF) model.
The cgeneric contain code to specify GMRF elements such as
the graph and the precision matrix, and also the initial and
prior for its parameters, useful for model inference.
It can be accessed from a C program and is the recommended
way to implement new GMRF models in the 'INLA' package
(<https://www.r-inla.org>).
The 'INLAtools' implement functions to evaluate
each one of the model specifications from R.
The implemented functionalities leverage the use
of 'cgeneric' models and provide a way to debug
the code as well to work with the prior for the
model parameters and to sample from it.
A very useful functionality is the Kronecker product method
that creates a new model from multiple cgeneric models.
It also works with the rgeneric, the R version of the
cgeneric intended to easy try implementation of new GMRF models.
The Kronecker between two cgeneric models was used in
Sterr [...truncated...]
Author: Elias Teixeira Krainski [cre, aut, cph] ,
Finn Lindgren [aut] ,
Haavard Rue’ [aut]
Maintainer: Elias Teixeira Krainski <eliaskrainski@gmail.com>
Diff between INLAtools versions 0.0.5 dated 2025-11-20 and 0.0.6 dated 2025-12-19
DESCRIPTION | 6 ++--- MD5 | 13 ++++++------ R/cgeneric.R | 16 ++++++++------- R/cgeneric_utils.R | 56 ++++++++++++++++++++++++++--------------------------- demo/00Index | 1 demo/cgeneric.R | 9 ++++++-- demo/kronecker.R | 6 +++-- demo/minimal.R |only 8 files changed, 59 insertions(+), 48 deletions(-)
Title: Estimate Latent Classes on a Mixture of Continuous and
Dichotomous Data
Description: EQ-5D value set estimation can be done using the hybrid model likelihood as described by
Oppe and van Hout (2010) <doi:10.1002/hec.3560> and Ramos-Goñi et al. (2017) <doi:10.1097/MLR.0000000000000283>.
The package is based on 'flexmix' and among others contains an M-step-driver as described by Leisch (2004) <doi:10.18637/jss.v011.i08>.
Users can estimate latent classes and address preference heterogeneity. Both uncensored and censored data are supported.
Furthermore, heteroscedasticity can be taken into account. It is possible to control for different covariates on the continuous and dichotomous parts of the data and start values can differ
between the expected latent classes.
Author: Svenja Elkenkamp [aut, cre],
Kim Rand [aut],
John Grosser [aut],
EuroQol [fnd]
Maintainer: Svenja Elkenkamp <svenja.elkenkamp@uni-bielefeld.de>
Diff between hyreg2 versions 1.0.0 dated 2025-10-06 and 1.1.0 dated 2025-12-19
hyreg2-1.0.0/hyreg2/man/give_id.Rd |only hyreg2-1.1.0/hyreg2/DESCRIPTION | 13 hyreg2-1.1.0/hyreg2/MD5 | 49 + hyreg2-1.1.0/hyreg2/NAMESPACE | 2 hyreg2-1.1.0/hyreg2/NEWS.md |only hyreg2-1.1.0/hyreg2/R/FLXMRhyreg.R | 202 +++++-- hyreg2-1.1.0/hyreg2/R/FLXMRhyreg_het.R | 82 +-- hyreg2-1.1.0/hyreg2/R/data.R | 35 - hyreg2-1.1.0/hyreg2/R/helper_functions.R |only hyreg2-1.1.0/hyreg2/R/hyreg2.R | 584 +++++++++++++---------- hyreg2-1.1.0/hyreg2/R/hyreg2_het.R | 59 -- hyreg2-1.1.0/hyreg2/R/plot_hyreg2.R | 50 - hyreg2-1.1.0/hyreg2/build |only hyreg2-1.1.0/hyreg2/data/simulated_data_norm.rda |binary hyreg2-1.1.0/hyreg2/inst |only hyreg2-1.1.0/hyreg2/man/FLXMRhyreg.Rd | 6 hyreg2-1.1.0/hyreg2/man/get_stv.Rd | 2 hyreg2-1.1.0/hyreg2/man/give_class.Rd |only hyreg2-1.1.0/hyreg2/man/hyreg2.Rd | 28 - hyreg2-1.1.0/hyreg2/man/hyreg2_het.Rd | 8 hyreg2-1.1.0/hyreg2/man/plot_hyreg2.Rd | 23 hyreg2-1.1.0/hyreg2/man/simulated_data.Rd | 86 +-- hyreg2-1.1.0/hyreg2/man/simulated_data_mo.Rd | 66 +- hyreg2-1.1.0/hyreg2/man/simulated_data_norm.Rd | 67 +- hyreg2-1.1.0/hyreg2/man/summary_hyreg2.Rd | 7 hyreg2-1.1.0/hyreg2/vignettes |only 26 files changed, 785 insertions(+), 584 deletions(-)
Title: Fast Library for Number Theory
Description: An R interface to 'FLINT' <https://flintlib.org/>, a C library for
number theory. 'FLINT' extends GNU 'MPFR' <https://www.mpfr.org/>
and GNU 'MP' <https://gmplib.org/> with support for operations on
standard rings (the integers, the integers modulo n, finite
fields, the rational, p-adic, real, and complex numbers) as well
as matrices and polynomials over rings. 'FLINT' implements
midpoint-radius interval arithmetic, also known as ball
arithmetic, in the real and complex numbers, enabling computation
in arbitrary precision with rigorous propagation of rounding and
other errors; see Johansson (2017) <doi:10.1109/TC.2017.2690633>.
Finally, 'FLINT' provides ball arithmetic implementations of many
special mathematical functions, with high coverage of reference
works such as the NIST Digital Library of Mathematical Functions
<https://dlmf.nist.gov/>. The R interface defines S4 classes,
generic functions, and methods for representation and basic
operations as [...truncated...]
Author: Mikael Jagan [aut, cre] ,
Martin Maechler [ctb]
Maintainer: Mikael Jagan <jaganmn2@gmail.com>
Diff between flint versions 0.1.3 dated 2025-12-18 and 0.1.4 dated 2025-12-19
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- configure | 18 +++++++++--------- configure.ac | 2 +- inst/NEWS.Rd | 14 ++++++++++++++ src/acb.c | 7 +++++++ src/acf.c | 10 ++++++++++ src/arb.c | 6 ++++++ src/arf.c | 8 ++++++++ src/flint.h | 5 +++-- src/fmpq.c | 6 ++++++ src/fmpz.c | 8 ++++++++ src/mag.c | 7 +++++++ src/slong.c | 8 ++++++++ src/ulong.c | 8 ++++++++ src/utils.c | 20 +++++++++++++------- 16 files changed, 127 insertions(+), 38 deletions(-)
Title: Modelling Multivariate Data with Additive Bayesian Networks
Description: The 'abn' R package facilitates Bayesian network analysis, a
probabilistic graphical model that derives from empirical data a
directed acyclic graph (DAG). This DAG describes the dependency
structure between random variables. The R package 'abn' provides
routines to help determine optimal Bayesian network models for a given
data set. These models are used to identify statistical dependencies
in messy, complex data. Their additive formulation is equivalent to
multivariate generalised linear modelling, including mixed models with
independent and identically distributed (iid) random effects. The core
functionality of the 'abn' package revolves around model selection,
also known as structure discovery. It supports both exact and
heuristic structure learning algorithms and does not restrict the data
distribution of parent-child combinations, providing flexibility in
model creation and analysis. The 'abn' package uses Laplace
approximations for metric estimation and includes wrappers to the
[...truncated...]
Author: Matteo Delucchi [aut, cre] ,
Reinhard Furrer [aut] ,
Gilles Kratzer [aut] ,
Fraser Iain Lewis [aut] ,
Jonas I. Liechti [ctb] ,
Marta Pittavino [ctb] ,
Kalina Cherneva [ctb]
Maintainer: Matteo Delucchi <matteo.delucchi@math.uzh.ch>
Diff between abn versions 3.1.12 dated 2025-11-25 and 3.1.13 dated 2025-12-19
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ README.md | 2 +- configure | 18 +++++++++--------- configure.ac | 2 +- inst/doc/mixed_effect_BN_model.html | 2 +- src/mostprobable.c | 1 - 7 files changed, 22 insertions(+), 23 deletions(-)
Title: Tidy Messy Data
Description: Tools to help to create tidy data, where each column is a
variable, each row is an observation, and each cell contains a single
value. 'tidyr' contains tools for changing the shape (pivoting) and
hierarchy (nesting and 'unnesting') of a dataset, turning deeply
nested lists into rectangular data frames ('rectangling'), and
extracting values out of string columns. It also includes tools for
working with missing values (both implicit and explicit).
Author: Hadley Wickham [aut, cre],
Davis Vaughan [aut],
Maximilian Girlich [aut],
Kevin Ushey [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between tidyr versions 1.3.1 dated 2024-01-24 and 1.3.2 dated 2025-12-19
tidyr-1.3.1/tidyr/R/compat-lazyeval.R |only tidyr-1.3.1/tidyr/R/compat-obj-type.R |only tidyr-1.3.1/tidyr/R/compat-types-check.R |only tidyr-1.3.1/tidyr/vignettes/classroom.csv |only tidyr-1.3.1/tidyr/vignettes/classroom2.csv |only tidyr-1.3.2/tidyr/DESCRIPTION | 17 tidyr-1.3.2/tidyr/MD5 | 302 +++++------ tidyr-1.3.2/tidyr/NEWS.md | 309 ++++++----- tidyr-1.3.2/tidyr/R/append.R | 3 tidyr-1.3.2/tidyr/R/chop.R | 60 +- tidyr-1.3.2/tidyr/R/complete.R | 79 --- tidyr-1.3.2/tidyr/R/data.R | 13 tidyr-1.3.2/tidyr/R/dep-extract.R | 4 tidyr-1.3.2/tidyr/R/dep-lazyeval.R | 128 +++- tidyr-1.3.2/tidyr/R/doc-params.R | 29 - tidyr-1.3.2/tidyr/R/drop-na.R | 12 tidyr-1.3.2/tidyr/R/expand.R | 101 +-- tidyr-1.3.2/tidyr/R/extract.R | 38 + tidyr-1.3.2/tidyr/R/fill.R | 54 +- tidyr-1.3.2/tidyr/R/gather.R | 29 - tidyr-1.3.2/tidyr/R/hoist.R | 20 tidyr-1.3.2/tidyr/R/id.R | 1 tidyr-1.3.2/tidyr/R/import-standalone-lazyeval.R |only tidyr-1.3.2/tidyr/R/import-standalone-obj-type.R |only tidyr-1.3.2/tidyr/R/import-standalone-types-check.R |only tidyr-1.3.2/tidyr/R/nest-legacy.R | 41 + tidyr-1.3.2/tidyr/R/nest.R | 112 ++-- tidyr-1.3.2/tidyr/R/pack.R | 34 - tidyr-1.3.2/tidyr/R/pivot-long.R | 192 ++++--- tidyr-1.3.2/tidyr/R/pivot-wide.R | 240 +++++---- tidyr-1.3.2/tidyr/R/replace_na.R | 22 tidyr-1.3.2/tidyr/R/separate-longer.R | 29 - tidyr-1.3.2/tidyr/R/separate-rows.R | 17 tidyr-1.3.2/tidyr/R/separate-wider.R | 335 +++++++------ tidyr-1.3.2/tidyr/R/separate.R | 82 ++- tidyr-1.3.2/tidyr/R/seq.R | 8 tidyr-1.3.2/tidyr/R/spread.R | 40 + tidyr-1.3.2/tidyr/R/tidyr.R | 1 tidyr-1.3.2/tidyr/R/uncount.R | 7 tidyr-1.3.2/tidyr/R/unite.R | 61 +- tidyr-1.3.2/tidyr/R/unnest-auto.R | 3 tidyr-1.3.2/tidyr/R/unnest-helper.R | 29 - tidyr-1.3.2/tidyr/R/unnest-longer.R | 77 +- tidyr-1.3.2/tidyr/R/unnest-wider.R | 63 +- tidyr-1.3.2/tidyr/R/unnest.R | 97 ++- tidyr-1.3.2/tidyr/R/utils.R | 69 ++ tidyr-1.3.2/tidyr/README.md | 4 tidyr-1.3.2/tidyr/build/vignette.rds |binary tidyr-1.3.2/tidyr/inst/doc/in-packages.R | 178 +++--- tidyr-1.3.2/tidyr/inst/doc/in-packages.Rmd | 90 +-- tidyr-1.3.2/tidyr/inst/doc/in-packages.html | 59 +- tidyr-1.3.2/tidyr/inst/doc/nest.R | 18 tidyr-1.3.2/tidyr/inst/doc/nest.Rmd | 20 tidyr-1.3.2/tidyr/inst/doc/nest.html | 33 - tidyr-1.3.2/tidyr/inst/doc/pivot.R | 264 +++++----- tidyr-1.3.2/tidyr/inst/doc/pivot.Rmd | 255 ++++----- tidyr-1.3.2/tidyr/inst/doc/pivot.html | 327 ++++++------ tidyr-1.3.2/tidyr/inst/doc/programming.R | 2 tidyr-1.3.2/tidyr/inst/doc/programming.Rmd | 30 - tidyr-1.3.2/tidyr/inst/doc/programming.html | 7 tidyr-1.3.2/tidyr/inst/doc/rectangle.R | 110 ++-- tidyr-1.3.2/tidyr/inst/doc/rectangle.Rmd | 126 ++-- tidyr-1.3.2/tidyr/inst/doc/rectangle.html | 117 ++-- tidyr-1.3.2/tidyr/inst/doc/tidy-data.R | 77 +- tidyr-1.3.2/tidyr/inst/doc/tidy-data.Rmd | 87 +-- tidyr-1.3.2/tidyr/inst/doc/tidy-data.html | 155 +++--- tidyr-1.3.2/tidyr/man/chop.Rd | 14 tidyr-1.3.2/tidyr/man/cms_patient_experience.Rd | 10 tidyr-1.3.2/tidyr/man/complete.Rd | 12 tidyr-1.3.2/tidyr/man/drop_na.Rd | 6 tidyr-1.3.2/tidyr/man/expand.Rd | 48 - tidyr-1.3.2/tidyr/man/expand_grid.Rd | 44 - tidyr-1.3.2/tidyr/man/extract.Rd | 8 tidyr-1.3.2/tidyr/man/fill.Rd | 33 - tidyr-1.3.2/tidyr/man/gather.Rd | 6 tidyr-1.3.2/tidyr/man/hoist.Rd | 6 tidyr-1.3.2/tidyr/man/nest.Rd | 40 - tidyr-1.3.2/tidyr/man/nest_legacy.Rd | 14 tidyr-1.3.2/tidyr/man/pack.Rd | 14 tidyr-1.3.2/tidyr/man/pivot_longer.Rd | 10 tidyr-1.3.2/tidyr/man/pivot_longer_spec.Rd | 6 tidyr-1.3.2/tidyr/man/pivot_wider.Rd | 16 tidyr-1.3.2/tidyr/man/pivot_wider_spec.Rd | 8 tidyr-1.3.2/tidyr/man/relig_income.Rd | 2 tidyr-1.3.2/tidyr/man/replace_na.Rd | 10 tidyr-1.3.2/tidyr/man/separate.Rd | 22 tidyr-1.3.2/tidyr/man/separate_longer_delim.Rd | 10 tidyr-1.3.2/tidyr/man/separate_rows.Rd | 2 tidyr-1.3.2/tidyr/man/separate_wider_delim.Rd | 24 tidyr-1.3.2/tidyr/man/spread.Rd | 18 tidyr-1.3.2/tidyr/man/tidyr_data_masking.Rd | 24 tidyr-1.3.2/tidyr/man/tidyr_tidy_select.Rd | 4 tidyr-1.3.2/tidyr/man/unite.Rd | 8 tidyr-1.3.2/tidyr/man/unnest.Rd | 20 tidyr-1.3.2/tidyr/man/unnest_longer.Rd | 16 tidyr-1.3.2/tidyr/man/unnest_wider.Rd | 16 tidyr-1.3.2/tidyr/src/melt.cpp | 48 - tidyr-1.3.2/tidyr/tests/testthat/_snaps/append.md | 5 tidyr-1.3.2/tidyr/tests/testthat/_snaps/chop.md | 30 - tidyr-1.3.2/tidyr/tests/testthat/_snaps/drop-na.md | 14 tidyr-1.3.2/tidyr/tests/testthat/_snaps/expand.md | 25 tidyr-1.3.2/tidyr/tests/testthat/_snaps/extract.md | 35 - tidyr-1.3.2/tidyr/tests/testthat/_snaps/fill.md | 29 + tidyr-1.3.2/tidyr/tests/testthat/_snaps/gather.md | 45 + tidyr-1.3.2/tidyr/tests/testthat/_snaps/hoist.md | 51 + tidyr-1.3.2/tidyr/tests/testthat/_snaps/nest-legacy.md | 15 tidyr-1.3.2/tidyr/tests/testthat/_snaps/pack.md | 6 tidyr-1.3.2/tidyr/tests/testthat/_snaps/pivot-long.md | 169 +++--- tidyr-1.3.2/tidyr/tests/testthat/_snaps/pivot-wide.md | 192 ++++--- tidyr-1.3.2/tidyr/tests/testthat/_snaps/pivot.md | 25 tidyr-1.3.2/tidyr/tests/testthat/_snaps/replace_na.md | 15 tidyr-1.3.2/tidyr/tests/testthat/_snaps/separate-longer.md | 21 tidyr-1.3.2/tidyr/tests/testthat/_snaps/separate-rows.md | 3 tidyr-1.3.2/tidyr/tests/testthat/_snaps/separate-wider.md | 92 ++- tidyr-1.3.2/tidyr/tests/testthat/_snaps/separate.md | 17 tidyr-1.3.2/tidyr/tests/testthat/_snaps/seq.md | 10 tidyr-1.3.2/tidyr/tests/testthat/_snaps/spread.md | 5 tidyr-1.3.2/tidyr/tests/testthat/_snaps/unnest-helper.md | 66 +- tidyr-1.3.2/tidyr/tests/testthat/_snaps/unnest-longer.md | 51 - tidyr-1.3.2/tidyr/tests/testthat/_snaps/unnest-wider.md | 14 tidyr-1.3.2/tidyr/tests/testthat/_snaps/unnest.md | 34 - tidyr-1.3.2/tidyr/tests/testthat/test-append.R | 2 tidyr-1.3.2/tidyr/tests/testthat/test-chop.R | 64 +- tidyr-1.3.2/tidyr/tests/testthat/test-complete.R | 3 tidyr-1.3.2/tidyr/tests/testthat/test-drop-na.R | 13 tidyr-1.3.2/tidyr/tests/testthat/test-expand.R | 60 +- tidyr-1.3.2/tidyr/tests/testthat/test-extract.R | 39 - tidyr-1.3.2/tidyr/tests/testthat/test-fill.R | 48 + tidyr-1.3.2/tidyr/tests/testthat/test-gather.R | 39 - tidyr-1.3.2/tidyr/tests/testthat/test-hoist.R | 98 ++- tidyr-1.3.2/tidyr/tests/testthat/test-nest-legacy.R | 95 ++- tidyr-1.3.2/tidyr/tests/testthat/test-nest.R | 11 tidyr-1.3.2/tidyr/tests/testthat/test-pack.R | 24 tidyr-1.3.2/tidyr/tests/testthat/test-pivot-long.R | 196 ++++--- tidyr-1.3.2/tidyr/tests/testthat/test-pivot-wide.R | 263 +++++++--- tidyr-1.3.2/tidyr/tests/testthat/test-pivot.R | 12 tidyr-1.3.2/tidyr/tests/testthat/test-replace_na.R | 6 tidyr-1.3.2/tidyr/tests/testthat/test-separate-longer.R | 16 tidyr-1.3.2/tidyr/tests/testthat/test-separate-rows.R | 18 tidyr-1.3.2/tidyr/tests/testthat/test-separate-wider.R | 192 ++++--- tidyr-1.3.2/tidyr/tests/testthat/test-separate.R | 20 tidyr-1.3.2/tidyr/tests/testthat/test-seq.R | 6 tidyr-1.3.2/tidyr/tests/testthat/test-spread.R | 63 +- tidyr-1.3.2/tidyr/tests/testthat/test-uncount.R | 5 tidyr-1.3.2/tidyr/tests/testthat/test-unite.R | 36 + tidyr-1.3.2/tidyr/tests/testthat/test-unnest-auto.R | 13 tidyr-1.3.2/tidyr/tests/testthat/test-unnest-helper.R | 34 - tidyr-1.3.2/tidyr/tests/testthat/test-unnest-longer.R | 88 ++- tidyr-1.3.2/tidyr/tests/testthat/test-unnest-wider.R | 59 +- tidyr-1.3.2/tidyr/tests/testthat/test-unnest.R | 38 - tidyr-1.3.2/tidyr/vignettes/in-packages.Rmd | 90 +-- tidyr-1.3.2/tidyr/vignettes/nest.Rmd | 20 tidyr-1.3.2/tidyr/vignettes/pivot.Rmd | 255 ++++----- tidyr-1.3.2/tidyr/vignettes/programming.Rmd | 30 - tidyr-1.3.2/tidyr/vignettes/rectangle.Rmd | 126 ++-- tidyr-1.3.2/tidyr/vignettes/tidy-data.Rmd | 87 +-- 156 files changed, 4769 insertions(+), 3605 deletions(-)
Title: Generates Raven-Like Matrices According to Rules
Description: Generates Raven like matrices according to different rules and the response list associated to the matrix. The package can generate matrices composed of 4 or 9 cells, along with a response list of 11 elements (the correct response + 10 incorrect responses). The matrices can be generated according to both logical rules (i.e., the relationships between the elements in the matrix are manipulated to create the matrix) and visual-spatial rules (i.e., the visual or spatial characteristics of the elements are manipulated to generate the matrix).
The graphical elements of this package are based on the 'DescTools' package.
This package has been developed within the PRIN2020 Project (Prot. 20209WKCLL) titled "Computerized, Adaptive and Personalized Assessment of Executive Functions and Fluid Intelligence" and founded by the Italian Ministry of Education and Research.
Author: Andrea Brancaccio [aut, ctb, cph, cre],
Ottavia M. Epifania [aut, ctb, com],
Debora de Chiusole [ctb]
Maintainer: Andrea Brancaccio <andreabrancaccio01@gmail.com>
Diff between matRiks versions 0.1.3 dated 2024-02-16 and 0.1.4 dated 2025-12-19
DESCRIPTION | 26 ++++++++++++++++++-------- MD5 | 33 +++++++++++++++++---------------- NEWS.md | 8 +++----- R/draw.R | 20 +++++++++++++------- build/vignette.rds |binary inst/CITATION |only inst/doc/black-figures.html | 12 ++++++------ inst/doc/circle-sections.html | 18 +++++++++--------- inst/doc/closed-figures.html | 14 +++++++------- inst/doc/eight-shapes-figures.html | 4 ++-- inst/doc/flowers-figures.html | 12 ++++++------ inst/doc/generate_matriks.R | 7 +++++++ inst/doc/generate_matriks.Rmd | 10 ++++++++++ inst/doc/generate_matriks.html | 21 ++++++++++++--------- inst/doc/lines.html | 16 ++++++++-------- inst/doc/other-figures.html | 10 +++++----- man/draw.Rd | 7 +++++-- vignettes/generate_matriks.Rmd | 10 ++++++++++ 18 files changed, 138 insertions(+), 90 deletions(-)
Title: Formatting Tools for Scientific Journal Writing
Description: Scientific journal numeric formatting policies implemented in
code. Emphasis on formatting mean/upper/lower sets of values to pasteable
text for journal submission. For example c(2e6, 1e6, 3e6) becomes
"2.00 million (1.00--3.00)". Lancet and Nature have built-in
styles for rounding and punctuation marks. Users may extend
journal styles arbitrarily. Four metrics are supported;
proportions, percentage points, counts and rates. Magnitudes for
all metrics are discovered automatically.
Author: Sam Byrne [aut, cre, cph]
Maintainer: Sam Byrne <ssbyrne@uw.edu>
Diff between journalR versions 0.2.1 dated 2025-12-14 and 0.6.0 dated 2025-12-19
journalR-0.2.1/journalR/R/data_types.R |only journalR-0.2.1/journalR/man/assert_data_type.Rd |only journalR-0.2.1/journalR/man/format_means_df.Rd |only journalR-0.2.1/journalR/man/fround_count.Rd |only journalR-0.2.1/journalR/man/fround_dtype.Rd |only journalR-0.2.1/journalR/man/fround_dtype_lancet.Rd |only journalR-0.2.1/journalR/man/get_data_type_labels.Rd |only journalR-0.2.1/journalR/man/get_data_types.Rd |only journalR-0.2.1/journalR/man/get_style_item_by_data_type.Rd |only journalR-0.6.0/journalR/DESCRIPTION | 22 journalR-0.6.0/journalR/MD5 | 101 - journalR-0.6.0/journalR/NAMESPACE | 10 journalR-0.6.0/journalR/NEWS.md | 30 journalR-0.6.0/journalR/R/assertions.R | 41 journalR-0.6.0/journalR/R/bindings.R | 1 journalR-0.6.0/journalR/R/format_vectors.R | 969 ++++++---- journalR-0.6.0/journalR/R/metrics.R |only journalR-0.6.0/journalR/R/pretty_print_journal.R | 468 ++-- journalR-0.6.0/journalR/R/set_magnitude.R | 334 ++- journalR-0.6.0/journalR/R/styles.R | 253 +- journalR-0.6.0/journalR/R/switch_strict.R | 11 journalR-0.6.0/journalR/R/zzz.R | 6 journalR-0.6.0/journalR/README.md | 423 ++-- journalR-0.6.0/journalR/man/add_epsilon.Rd |only journalR-0.6.0/journalR/man/apply_sigfig_zero_padding.Rd |only journalR-0.6.0/journalR/man/assert_clu_relationship.Rd | 4 journalR-0.6.0/journalR/man/assert_fround_return_schema.Rd |only journalR-0.6.0/journalR/man/assert_metric.Rd |only journalR-0.6.0/journalR/man/assert_rate_unit.Rd |only journalR-0.6.0/journalR/man/assert_set_choice.Rd | 4 journalR-0.6.0/journalR/man/assert_style_schema.Rd | 4 journalR-0.6.0/journalR/man/assert_x_gte_y.Rd | 4 journalR-0.6.0/journalR/man/assert_x_in_y.Rd | 4 journalR-0.6.0/journalR/man/assert_x_not_in_y.Rd | 4 journalR-0.6.0/journalR/man/fmt_magnitude.Rd | 37 journalR-0.6.0/journalR/man/format_decimal.Rd |only journalR-0.6.0/journalR/man/format_int.Rd |only journalR-0.6.0/journalR/man/format_journal_clu.Rd | 42 journalR-0.6.0/journalR/man/format_journal_df.Rd | 46 journalR-0.6.0/journalR/man/format_lancet_clu.Rd | 26 journalR-0.6.0/journalR/man/format_lancet_df.Rd | 27 journalR-0.6.0/journalR/man/format_metric_cols.Rd |only journalR-0.6.0/journalR/man/format_nature_clu.Rd | 26 journalR-0.6.0/journalR/man/format_nature_df.Rd | 24 journalR-0.6.0/journalR/man/format_oxford_comma.Rd | 7 journalR-0.6.0/journalR/man/fround.Rd | 7 journalR-0.6.0/journalR/man/fround_clu_triplet.Rd | 34 journalR-0.6.0/journalR/man/fround_count_rate.Rd |only journalR-0.6.0/journalR/man/fround_metric.Rd |only journalR-0.6.0/journalR/man/fround_metric_lancet.Rd |only journalR-0.6.0/journalR/man/fround_props.Rd | 23 journalR-0.6.0/journalR/man/get_metric_labels.Rd |only journalR-0.6.0/journalR/man/get_metrics.Rd |only journalR-0.6.0/journalR/man/get_style_item_by_metric.Rd |only journalR-0.6.0/journalR/man/new_style.Rd | 20 journalR-0.6.0/journalR/man/set_magnitude.Rd | 53 journalR-0.6.0/journalR/man/set_magnitude_count.Rd |only journalR-0.6.0/journalR/man/set_magnitude_prop.Rd |only journalR-0.6.0/journalR/man/set_magnitude_rate.Rd |only journalR-0.6.0/journalR/man/set_style.Rd | 37 journalR-0.6.0/journalR/tests/testthat/test-format_vectors.R | 226 ++ journalR-0.6.0/journalR/tests/testthat/test-pretty_print_journal.R | 250 ++ journalR-0.6.0/journalR/tests/testthat/test-rates.R |only journalR-0.6.0/journalR/tests/testthat/test-set_magnitude.R | 235 ++ journalR-0.6.0/journalR/tests/testthat/test-set_magnitude_deprec.R |only journalR-0.6.0/journalR/tests/testthat/test-switch_strict.R | 4 66 files changed, 2697 insertions(+), 1120 deletions(-)
Title: Open Source Geometry Engine ('GEOS') R API
Description: Provides an R API to the Open Source Geometry Engine
('GEOS') library (<https://libgeos.org/>) and a vector format
with which to efficiently store 'GEOS' geometries. High-performance functions
to extract information from, calculate relationships between, and
transform geometries are provided. Finally, facilities to import
and export geometry vectors to other spatial formats are provided.
Author: Dewey Dunnington [aut, cre] ,
Edzer Pebesma [aut]
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between geos versions 0.2.4 dated 2023-11-30 and 0.2.5 dated 2025-12-19
DESCRIPTION | 19 +++++++------ MD5 | 26 ++++++++++-------- NAMESPACE | 1 NEWS.md | 8 +++++ R/compat-terra.R |only R/geos-binary-geometry.R | 13 +++++++-- R/geos-geometry.R | 51 +++++++++++++++++++++++++++++++++---- R/geos-plot.R | 11 ++++++- R/zzz.R | 41 +++++++++++++++++++++++++++++ README.md | 2 - man/as_geos_geometry.Rd | 3 ++ man/geos-package.Rd | 2 - man/geos_intersection.Rd | 13 +++++++-- src/geos-strtree.c | 6 ++-- tests/testthat/test-compat-terra.R |only 15 files changed, 159 insertions(+), 37 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-07-19 1.0.0
2020-06-30 0.2.13
2020-02-13 0.2.10
2020-01-13 0.2.9
2019-06-24 0.2.5
2019-06-14 0.2.4
2019-05-16 0.2.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-02 1.3
2015-04-16 1.1
2014-09-16 1.0.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-28 1.2
2014-11-27 1.1
2013-04-23 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-05-19 2.0.3.1
2021-05-25 2.0.3
2020-02-04 2.0.2
2018-06-09 2.0.1
2018-05-18 2.0.0
2015-05-12 1.2.0
2015-03-19 1.1.0
2013-03-10 1.0.2
2011-03-17 1.0.1
2011-03-07 1.0
2009-12-09 0.9.1
2009-05-07 0.8.1
2009-04-28 0.7.2
2009-03-13 0.7.1
2008-02-04 0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-01-10 0.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-08 0.3.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-08-19 0.3.4.1
2022-02-04 0.3.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-26 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-10 3.2.1
2020-09-09 3.2.0
2020-04-11 3.1.1
2018-05-29 3.1.0
2017-02-01 3.0.0
2016-11-10 2.2.0
2016-05-16 2.0.1
2016-05-12 2.0
2016-04-21 1.1
2015-09-25 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-05-22 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-03-01 1.0.2
2023-12-01 1.0.1
2023-11-27 1.0.0
2023-10-16 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-08-17 0.1.24
2023-05-11 0.1.23
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-30 0.3.1
2017-06-29 0.3.0
2017-02-10 0.2.2
2017-01-23 0.2.1
2016-11-30 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-06-23 1.6.0
2023-08-19 1.5.1
2022-09-30 1.5.0
2022-03-18 1.4
2021-01-05 1.3.5
2020-06-03 1.3.4
2020-04-09 1.3.3
2020-03-02 1.3.2
2020-02-18 1.3.1
2020-01-29 1.3
2020-01-21 1.2.0
2019-08-03 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-25 0.9.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-09 0.4.1
Title: Bayesian Change-Point Detection and Time Series Decomposition
Description: BEAST is a Bayesian estimator of abrupt change, seasonality, and trend for decomposing univariate time series and 1D sequential data. Interpretation of time series depends on model choice; different models can yield contrasting or contradicting estimates of patterns, trends, and mechanisms. BEAST alleviates this by abandoning the single-best-model paradigm and instead using Bayesian model averaging over many competing decompositions. It detects and characterizes abrupt changes (changepoints, breakpoints, structural breaks, joinpoints), cyclic or seasonal variation, and nonlinear trends. BEAST not only detects when changes occur but also quantifies how likely the changes are true. It estimates not just piecewise linear trends but also arbitrary nonlinear trends. BEAST is generically applicable to any real-valued time series, such as those from remote sensing, economics, climate science, ecology, hydrology, and other environmental and biological systems. Example applications include iden [...truncated...]
Author: Tongxi Hu [aut],
Yang Li [aut],
Xuesong Zhang [aut],
Kaiguang Zhao [aut, cre],
Jack Dongarra [ctb],
Cleve Moler [ctb]
Maintainer: Kaiguang Zhao <zhao.1423@osu.edu>
Diff between Rbeast versions 1.0.1 dated 2024-08-30 and 1.0.2 dated 2025-12-19
DESCRIPTION | 10 MD5 | 75 +- NEWS.md | 7 R/beast.R | 11 R/beast.irreg.R | 8 R/zzz.R | 25 README.md | 79 ++ build |only man/beast.Rd | 809 ++++++++++++++----------- man/beast.irreg.Rd | 865 ++++++++++++++++----------- man/beast123.Rd | 1281 +++++++++++++++++++++------------------- man/minesweeper.Rd | 15 man/tetris.Rd | 15 src/abc_000_macro.h | 191 +++-- src/abc_001_config.h | 26 src/abc_datatype.h | 19 src/abc_ide_util_R.c | 16 src/abc_mat.h | 3 src/abc_mem.h | 2 src/abc_pthread.h | 230 +++---- src/abc_sort.c | 68 ++ src/abc_sort.h | 8 src/abc_sort_template.h | 7 src/abc_ts_func.c | 27 src/abc_ts_func.h | 1 src/beastv2_COREV4.c | 18 src/beastv2_COREV4_bic.c | 14 src/beastv2_COREV4_bic_mthrd.c | 19 src/beastv2_COREV4_gui.c | 16 src/beastv2_COREV4_mthrd.c | 35 - src/beastv2_date.c | 2 src/beastv2_func_q.c | 2 src/beastv2_header.h | 5 src/beastv2_header_solaris.h | 5 src/beastv2_io_in_args.c | 19 src/beastv2_io_out_printargs.c | 44 - src/beastv2_model_allocinit_q.c | 80 -- src/beastv2_prior_model.c | 377 ++++++++--- src/glue_code.c | 66 -- 39 files changed, 2578 insertions(+), 1922 deletions(-)
Title: Software Citation Tools
Description: A collection of functions to extract citation information from 'R' packages and to deal with files in 'citation file format' (<https://citation-file-format.github.io/>), extending the functionality already provided by the citation() function in the 'utils' package.
Author: Jan Philipp Dietrich [aut, cre] ,
Waldir Leoncio [aut]
Maintainer: Jan Philipp Dietrich <dietrich@pik-potsdam.de>
Diff between citation versions 0.8.2 dated 2023-03-30 and 0.12.2 dated 2025-12-19
DESCRIPTION | 23 ++++++++++++++--------- MD5 | 18 +++++++++--------- R/cff2bibentry.R | 35 +++++++++++++++++++---------------- R/cff2md.R | 19 ++++++++++++++++++- R/r2cff.R | 32 +++++++++++++++++++++++++++++--- README.md | 11 ++++++----- build/partial.rdb |binary man/citation-package.Rd | 4 ++-- tests/testthat/test-cff2r.R | 39 ++++++++++++++++++++------------------- tests/testthat/test-r2cff.R | 2 -- 10 files changed, 117 insertions(+), 66 deletions(-)
Title: Create TLGs using the 'tidyverse'
Description: Generate tables, listings, and graphs (TLG) using 'tidyverse'.
Tables can be created functionally, using a standard TLG process, or by
specifying table and column metadata to create generic analysis summaries.
The 'envsetup' package can also be leveraged to create environments for table
creation.
Author: Nicholas Masel [aut],
Steven Haesendonckx [aut],
Pelagia Alexandra Papadopoulou [aut],
Sheng-Wei Wang [aut],
Eli Miller [aut] ,
Nathan Kosiba [aut] ,
Aidan Ceney [aut] ,
Janssen R&D [cph, fnd],
David Hugh-Jones [cph] ,
Konrad Pagacz [aut, cre]
Maintainer: Konrad Pagacz <kpagacz@its.jnj.com>
Diff between tidytlg versions 0.10.0 dated 2025-07-02 and 0.11.0 dated 2025-12-19
tidytlg-0.10.0/tidytlg/tests/testthat/_snaps/png/png1.rtf |only tidytlg-0.10.0/tidytlg/tests/testthat/_snaps/png/png2.rtf |only tidytlg-0.10.0/tidytlg/tests/testthat/test-getFileName.R |only tidytlg-0.10.0/tidytlg/tests/testthat/test-snapshot-Listing01.R |only tidytlg-0.11.0/tidytlg/DESCRIPTION | 17 tidytlg-0.11.0/tidytlg/MD5 | 306 - tidytlg-0.11.0/tidytlg/NEWS.md | 28 tidytlg-0.11.0/tidytlg/R/add_bottom_borders.R | 16 tidytlg-0.11.0/tidytlg/R/add_format.R | 20 tidytlg-0.11.0/tidytlg/R/add_indent.R | 6 tidytlg-0.11.0/tidytlg/R/add_newrows.R | 24 tidytlg-0.11.0/tidytlg/R/bind_table.R | 45 tidytlg-0.11.0/tidytlg/R/check_args.R | 42 tidytlg-0.11.0/tidytlg/R/data.R | 426 - tidytlg-0.11.0/tidytlg/R/freq.R | 134 tidytlg-0.11.0/tidytlg/R/generate_results.R | 29 tidytlg-0.11.0/tidytlg/R/gentlg.R | 94 tidytlg-0.11.0/tidytlg/R/gentlg_single.R | 169 tidytlg-0.11.0/tidytlg/R/getFileName.R | 18 tidytlg-0.11.0/tidytlg/R/nested_freq.R | 30 tidytlg-0.11.0/tidytlg/R/quick_rtf_jnj.R | 90 tidytlg-0.11.0/tidytlg/R/remove_zero_padding.R | 6 tidytlg-0.11.0/tidytlg/R/rmdpstitle.R | 22 tidytlg-0.11.0/tidytlg/R/roundSAS.R | 17 tidytlg-0.11.0/tidytlg/R/statlist.R | 101 tidytlg-0.11.0/tidytlg/R/tidytlg-package.R | 142 tidytlg-0.11.0/tidytlg/R/tlgsetup.R | 20 tidytlg-0.11.0/tidytlg/R/univar.R | 46 tidytlg-0.11.0/tidytlg/R/utility.R | 4 tidytlg-0.11.0/tidytlg/build/vignette.rds |binary tidytlg-0.11.0/tidytlg/data/cdisc_adae.rda |binary tidytlg-0.11.0/tidytlg/data/cdisc_adsl.rda |binary tidytlg-0.11.0/tidytlg/inst/WORDLIST |only tidytlg-0.11.0/tidytlg/inst/doc/freq.R | 19 tidytlg-0.11.0/tidytlg/inst/doc/freq.Rmd | 142 tidytlg-0.11.0/tidytlg/inst/doc/freq.html | 236 tidytlg-0.11.0/tidytlg/inst/doc/symbols.Rmd | 17 tidytlg-0.11.0/tidytlg/inst/doc/symbols.html | 54 tidytlg-0.11.0/tidytlg/inst/doc/tbl_manipulation.Rmd | 52 tidytlg-0.11.0/tidytlg/inst/doc/tbl_manipulation.html | 110 tidytlg-0.11.0/tidytlg/inst/doc/tidytlg.R | 90 tidytlg-0.11.0/tidytlg/inst/doc/tidytlg.Rmd | 261 - tidytlg-0.11.0/tidytlg/inst/doc/tidytlg.html | 626 +- tidytlg-0.11.0/tidytlg/inst/doc/tlgsetup.R | 4 tidytlg-0.11.0/tidytlg/inst/doc/tlgsetup.Rmd | 32 tidytlg-0.11.0/tidytlg/inst/doc/tlgsetup.html | 57 tidytlg-0.11.0/tidytlg/inst/doc/univar.R | 16 tidytlg-0.11.0/tidytlg/inst/doc/univar.Rmd | 109 tidytlg-0.11.0/tidytlg/inst/doc/univar.html | 115 tidytlg-0.11.0/tidytlg/man/add_bottom_borders.Rd | 16 tidytlg-0.11.0/tidytlg/man/add_format.Rd | 32 tidytlg-0.11.0/tidytlg/man/add_indent.Rd | 18 tidytlg-0.11.0/tidytlg/man/add_newrows.Rd | 93 tidytlg-0.11.0/tidytlg/man/bind_table.Rd | 113 tidytlg-0.11.0/tidytlg/man/cdisc-adae.Rd | 116 tidytlg-0.11.0/tidytlg/man/cdisc-adlb.Rd | 92 tidytlg-0.11.0/tidytlg/man/cdisc-adsl.Rd | 102 tidytlg-0.11.0/tidytlg/man/cdisc-advs.Rd | 74 tidytlg-0.11.0/tidytlg/man/char2factor.Rd | 6 tidytlg-0.11.0/tidytlg/man/column_metadata.Rd | 18 tidytlg-0.11.0/tidytlg/man/files.Rd | 4 tidytlg-0.11.0/tidytlg/man/freq.Rd | 191 tidytlg-0.11.0/tidytlg/man/generate_results.Rd | 21 tidytlg-0.11.0/tidytlg/man/gentlg.Rd | 94 tidytlg-0.11.0/tidytlg/man/nested_freq.Rd | 192 tidytlg-0.11.0/tidytlg/man/old_format.Rd | 2 tidytlg-0.11.0/tidytlg/man/remove_zero_padding.Rd | 8 tidytlg-0.11.0/tidytlg/man/replace_na_with_blank.Rd | 2 tidytlg-0.11.0/tidytlg/man/rmdpstitle.Rd | 22 tidytlg-0.11.0/tidytlg/man/roundSAS.Rd | 11 tidytlg-0.11.0/tidytlg/man/statlist.Rd | 110 tidytlg-0.11.0/tidytlg/man/table_metadata.Rd | 32 tidytlg-0.11.0/tidytlg/man/tidytlg.Rd | 136 tidytlg-0.11.0/tidytlg/man/tlgsetup.Rd | 28 tidytlg-0.11.0/tidytlg/man/univar.Rd | 109 tidytlg-0.11.0/tidytlg/tests/testthat.R | 3 tidytlg-0.11.0/tidytlg/tests/testthat/_snaps/borders/noborders.rtf | 52 tidytlg-0.11.0/tidytlg/tests/testthat/_snaps/borders/oldformat.rtf | 52 tidytlg-0.11.0/tidytlg/tests/testthat/_snaps/borders/oldformatlisting.rtf | 54 tidytlg-0.11.0/tidytlg/tests/testthat/_snaps/borders/spanningbordersrow1.rtf | 52 tidytlg-0.11.0/tidytlg/tests/testthat/_snaps/borders/stubborntest.rtf | 30 tidytlg-0.11.0/tidytlg/tests/testthat/_snaps/colheader/colheader1.rtf | 34 tidytlg-0.11.0/tidytlg/tests/testthat/_snaps/colheader/colheader2.rtf | 34 tidytlg-0.11.0/tidytlg/tests/testthat/_snaps/colspan/colspan1.rtf | 28 tidytlg-0.11.0/tidytlg/tests/testthat/_snaps/colspan/colspan2.rtf | 40 tidytlg-0.11.0/tidytlg/tests/testthat/_snaps/colspan/colspan3.rtf | 28 tidytlg-0.11.0/tidytlg/tests/testthat/_snaps/insert_empty_rows/inserts.rtf | 38 tidytlg-0.11.0/tidytlg/tests/testthat/_snaps/multiple-tables-in-rtf/multipletabs.rtf | 88 tidytlg-0.11.0/tidytlg/tests/testthat/_snaps/page_numbers/pagenumbers.rtf | 56 tidytlg-0.11.0/tidytlg/tests/testthat/_snaps/page_numbers/pagenumberstable.rtf | 56 tidytlg-0.11.0/tidytlg/tests/testthat/_snaps/png/test2plots.rtf | 12 tidytlg-0.11.0/tidytlg/tests/testthat/_snaps/titles/gsvit01a.rtf | 28 tidytlg-0.11.0/tidytlg/tests/testthat/_snaps/tlgsetup/testtlgsetup.rtf | 40 tidytlg-0.11.0/tidytlg/tests/testthat/freq_rowtext_row_header.R | 137 tidytlg-0.11.0/tidytlg/tests/testthat/test-bind_table.R | 66 tidytlg-0.11.0/tidytlg/tests/testthat/test-borders.R | 281 - tidytlg-0.11.0/tidytlg/tests/testthat/test-check_args.R | 698 +- tidytlg-0.11.0/tidytlg/tests/testthat/test-colheader.R | 55 tidytlg-0.11.0/tidytlg/tests/testthat/test-colspan.R | 115 tidytlg-0.11.0/tidytlg/tests/testthat/test-freq.R | 2386 ++++++++-- tidytlg-0.11.0/tidytlg/tests/testthat/test-freq_cutoff.R | 49 tidytlg-0.11.0/tidytlg/tests/testthat/test-freq_descending_by.R | 29 tidytlg-0.11.0/tidytlg/tests/testthat/test-freq_ord.R | 610 ++ tidytlg-0.11.0/tidytlg/tests/testthat/test-freq_pad.R | 146 tidytlg-0.11.0/tidytlg/tests/testthat/test-freq_sparse.R | 209 tidytlg-0.11.0/tidytlg/tests/testthat/test-freq_subset.R | 18 tidytlg-0.11.0/tidytlg/tests/testthat/test-gentlg.R | 30 tidytlg-0.11.0/tidytlg/tests/testthat/test-get_file_name.R |only tidytlg-0.11.0/tidytlg/tests/testthat/test-insert_empty_rows.R | 101 tidytlg-0.11.0/tidytlg/tests/testthat/test-metadata.R | 151 tidytlg-0.11.0/tidytlg/tests/testthat/test-multiple-tables-in-rtf.R | 78 tidytlg-0.11.0/tidytlg/tests/testthat/test-nested.R | 1582 +++++- tidytlg-0.11.0/tidytlg/tests/testthat/test-nested_cutoff.R | 826 +++ tidytlg-0.11.0/tidytlg/tests/testthat/test-nested_freq.R | 118 tidytlg-0.11.0/tidytlg/tests/testthat/test-nested_ord.R | 356 + tidytlg-0.11.0/tidytlg/tests/testthat/test-page_numbers.R | 93 tidytlg-0.11.0/tidytlg/tests/testthat/test-png.R | 72 tidytlg-0.11.0/tidytlg/tests/testthat/test-quick_rtf_jnj.R | 8 tidytlg-0.11.0/tidytlg/tests/testthat/test-roundSAS.R | 34 tidytlg-0.11.0/tidytlg/tests/testthat/test-spanning_headers.R | 108 tidytlg-0.11.0/tidytlg/tests/testthat/test-titles.R | 60 tidytlg-0.11.0/tidytlg/tests/testthat/test-tlgsetup.R | 74 tidytlg-0.11.0/tidytlg/tests/testthat/test-univar.R | 627 +- tidytlg-0.11.0/tidytlg/tests/testthat/test-univar_keep.R | 161 tidytlg-0.11.0/tidytlg/tests/testthat/test-univar_ord.R | 719 ++- tidytlg-0.11.0/tidytlg/tests/testthat/test-univar_precision.R | 464 + tidytlg-0.11.0/tidytlg/tests/testthat/test-univar_rowbyvar.R | 771 ++- tidytlg-0.11.0/tidytlg/tests/testthat/test-univar_rowtext.R | 100 tidytlg-0.11.0/tidytlg/tests/testthat/test-utility.R | 55 tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/borders/noborders.rtf | 52 tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/borders/oldformat.rtf | 52 tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/borders/oldformatlisting.rtf | 54 tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/borders/spanningbordersrow1.rtf | 52 tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/borders/stubborntest.rtf | 30 tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/colheader1.rtf | 34 tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/colheader2.rtf | 34 tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/colspan1.rtf | 28 tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/colspan2.rtf | 40 tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/colspan3.rtf | 28 tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/emptyrowsinsertions/inserts.rtf | 38 tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/gsvit01a.rtf | 28 tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/multiple_tables_in_one_file/multipletabs.rtf | 88 tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/pagenumbers.rtf | 56 tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/pagenumberstable.rtf | 56 tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/png1.png |binary tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/png1.rtf | 10 tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/png2.png |binary tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/png2.rtf | 10 tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/test2plots.rtf | 12 tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/testtlgsetup.rtf | 40 tidytlg-0.11.0/tidytlg/tests/testthat/test_outputs/tsidem01.rtf | 44 tidytlg-0.11.0/tidytlg/vignettes/freq.Rmd | 142 tidytlg-0.11.0/tidytlg/vignettes/symbols.Rmd | 17 tidytlg-0.11.0/tidytlg/vignettes/tbl_manipulation.Rmd | 52 tidytlg-0.11.0/tidytlg/vignettes/tidytlg.Rmd | 261 - tidytlg-0.11.0/tidytlg/vignettes/tlgsetup.Rmd | 32 tidytlg-0.11.0/tidytlg/vignettes/univar.Rmd | 109 157 files changed, 13261 insertions(+), 5684 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-10-10 1.5-11
2023-12-11 1.5-10
2023-01-17 1.5-9
2022-11-07 1.5-8
2022-10-19 1.5-7
2022-06-13 1.5-6
2021-03-16 1.5-5
2020-09-11 1.5-4
Title: A Simple Package for Testing R Packages
Description: Provides two convenience functions assert() and test_pkg() to
facilitate testing R packages.
Author: Yihui Xie [aut, cre] ,
Tomas Kalibera [ctb],
Steven Mortimer [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between testit versions 0.14 dated 2025-12-06 and 0.15 dated 2025-12-19
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/testit.R | 17 +++++++++++++---- 3 files changed, 18 insertions(+), 9 deletions(-)
Title: Markdown-Based Programmable Surveys Using 'Quarto' and 'shiny'
Description: Generate programmable surveys using markdown and R code chunks. Surveys
are composed of two files: a survey.qmd 'Quarto' file defining the
survey content (pages, questions, etc), and an app.R file defining a
'shiny' app with global settings (libraries, database configuration,
etc.) and server configuration options (e.g., conditional skipping /
display, etc.). Survey data collected from respondents is stored in a
'PostgreSQL' database. Features include controls for conditional skip
logic (skip to a page based on an answer to a question), conditional
display logic (display a question based on an answer to a question), a
customizable progress bar, and a wide variety of question types,
including multiple choice (single choice and multiple choices),
select, text, numeric, multiple choice buttons, text area, and dates.
Because the surveys render into a 'shiny' app, designers can also
leverage the reactive capabilities of 'shiny' to create dynamic and
interactive surveys.
Author: John Paul Helveston [aut, cre, cph] ,
Pingfan Hu [aut, cph] ,
Bogdan Bunea [aut, cph] ,
Stefan Munnes [ctb]
Maintainer: John Paul Helveston <john.helveston@gmail.com>
Diff between surveydown versions 0.14.0 dated 2025-11-03 and 1.0.1 dated 2025-12-19
surveydown-0.14.0/surveydown/R/translation.R |only surveydown-0.14.0/surveydown/inst/examples |only surveydown-0.14.0/surveydown/inst/js/after_body.js |only surveydown-0.14.0/surveydown/inst/js/enter_key.js |only surveydown-0.14.0/surveydown/inst/js/highlight_unanswered.js |only surveydown-0.14.0/surveydown/inst/js/update_progress.js |only surveydown-0.14.0/surveydown/man/sd_create_translations.Rd |only surveydown-1.0.1/surveydown/DESCRIPTION | 10 surveydown-1.0.1/surveydown/MD5 | 75 surveydown-1.0.1/surveydown/NAMESPACE | 5 surveydown-1.0.1/surveydown/NEWS.md | 19 surveydown-1.0.1/surveydown/R/config.R | 1020 ++++++-- surveydown-1.0.1/surveydown/R/messages.R |only surveydown-1.0.1/surveydown/R/server.R | 1075 +++++++- surveydown-1.0.1/surveydown/R/ui.R | 1390 +++++------ surveydown-1.0.1/surveydown/R/util.R | 138 - surveydown-1.0.1/surveydown/README.md | 12 surveydown-1.0.1/surveydown/inst/css/surveydown.css | 35 surveydown-1.0.1/surveydown/inst/js/clipboard.js |only surveydown-1.0.1/surveydown/inst/js/cookies.js | 127 - surveydown-1.0.1/surveydown/inst/js/highlighting.js |only surveydown-1.0.1/surveydown/inst/js/interaction.js |only surveydown-1.0.1/surveydown/inst/js/progressbar.js |only surveydown-1.0.1/surveydown/inst/lua/include-resources.lua | 7 surveydown-1.0.1/surveydown/inst/template/app.R | 2 surveydown-1.0.1/surveydown/inst/template/survey.qmd | 72 surveydown-1.0.1/surveydown/man/sd_close.Rd | 41 surveydown-1.0.1/surveydown/man/sd_copy_value.Rd | 35 surveydown-1.0.1/surveydown/man/sd_create_messages.Rd |only surveydown-1.0.1/surveydown/man/sd_get_url_pars.Rd | 61 surveydown-1.0.1/surveydown/man/sd_is_answered.Rd | 39 surveydown-1.0.1/surveydown/man/sd_nav.Rd |only surveydown-1.0.1/surveydown/man/sd_next.Rd | 30 surveydown-1.0.1/surveydown/man/sd_output.Rd | 34 surveydown-1.0.1/surveydown/man/sd_question.Rd | 66 surveydown-1.0.1/surveydown/man/sd_redirect.Rd | 55 surveydown-1.0.1/surveydown/man/sd_server.Rd | 62 surveydown-1.0.1/surveydown/man/sd_show_if.Rd | 41 surveydown-1.0.1/surveydown/man/sd_skip_if.Rd | 41 surveydown-1.0.1/surveydown/man/sd_store_value.Rd | 54 surveydown-1.0.1/surveydown/man/sd_ui.Rd | 36 41 files changed, 2981 insertions(+), 1601 deletions(-)
Title: 'Shiny' Applications for the R Package 'Luminescence'
Description: A collection of 'shiny' applications for the R package
'Luminescence'. These mainly, but not exclusively, include applications for
plotting chronometric data from e.g. luminescence or radiocarbon dating. It
further provides access to bootstraps tooltip and popover functionality and
contains the 'jscolor.js' library with a custom 'shiny' output binding.
Author: Christoph Burow [aut, cre] ,
Urs Tilmann Wolpert [aut],
Sebastian Kreutzer [aut] ,
Marco Colombo [aut] ,
R Luminescence Package Team [ctb],
Jan Odvarko [cph] ,
AnalytixWare [cph] ,
RStudio [cph]
Maintainer: Christoph Burow <christoph.burow@gmx.net>
Diff between RLumShiny versions 0.2.5 dated 2025-07-12 and 0.2.6 dated 2025-12-19
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Title: Density-Based Spatial Clustering of Applications with Noise
(DBSCAN) and Related Algorithms
Description: A fast reimplementation of several density-based algorithms
of the DBSCAN family. Includes the clustering algorithms DBSCAN
(density-based spatial clustering of applications with noise) and
HDBSCAN (hierarchical DBSCAN), the ordering algorithm OPTICS (ordering
points to identify the clustering structure), shared nearest neighbor
clustering, and the outlier detection algorithms LOF (local outlier
factor) and GLOSH (global-local outlier score from hierarchies). The
implementations use the kd-tree data structure (from library ANN) for
faster k-nearest neighbor search. An R interface to fast kNN and
fixed-radius NN search is also provided. Hahsler, Piekenbrock and
Doran (2019) <doi:10.18637/jss.v091.i01>.
Author: Michael Hahsler [aut, cre, cph] ,
Matthew Piekenbrock [aut, cph],
Sunil Arya [ctb, cph],
David Mount [ctb, cph],
Claudia Malzer [ctb]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between dbscan versions 1.2.3 dated 2025-08-20 and 1.2.4 dated 2025-12-19
DESCRIPTION | 10 ++++----- MD5 | 41 +++++++++++++++++++++------------------- NEWS.md | 8 +++++++ R/AAA_definitions.R | 12 ++++++++++- R/extractFOSC.R | 2 - README.md | 19 ++++++++++-------- build/partial.rdb |binary build/vignette.rds |binary inst/README_files/hdbscan-1.png |binary inst/doc/dbscan.R | 20 +++++++++---------- inst/doc/dbscan.Rnw | 11 ++++------ inst/doc/dbscan.pdf |binary man/dbscan_tidiers.Rd | 2 - man/extractFOSC.Rd | 2 - src/ANN/ANN.h | 19 +++++++----------- src/ANN/ANNperf.h | 27 +++++++++++--------------- src/ANN/ANNx.h | 27 +++++++++++--------------- src/ANN/Copyright.txt |only src/ANN/License.txt |only src/ANN/ReadMe.txt |only tests/testthat/test-dbscan.R | 6 +++++ vignettes/dbscan.Rnw | 11 ++++------ vignettes/dbscan.bib | 21 +++++++++++--------- 23 files changed, 130 insertions(+), 108 deletions(-)
Title: Thresholded Partial Least Squares Model for Neuroimaging Data
Description: Uses thresholded partial least squares algorithm to create a regression or classification model. For more information, see Lee, Bradlow, and Kable <doi:10.1016/j.crmeth.2022.100227>.
Author: Sangil Lee [aut, cre]
Maintainer: Sangil Lee <sangillee3rd@gmail.com>
Diff between TPLSr versions 1.0.4 dated 2022-06-10 and 1.0.5 dated 2025-12-19
DESCRIPTION | 8 MD5 | 18 - NEWS.md | 9 R/evalTuningParam.R | 3 README.md | 4 build/vignette.rds |binary inst/doc/TPLS_example1.R | 2 inst/doc/TPLS_example1.html | 397 +++++++++++++------------- inst/doc/TPLS_example2.R | 2 inst/doc/TPLS_example2.html | 651 ++++++++++++++++++++++---------------------- 10 files changed, 558 insertions(+), 536 deletions(-)
Title: Dataset of the 'Contoso' Company
Description: A collection of synthetic datasets simulating sales transactions from a fictional company. The dataset includes various related tables that contain essential business and operational data, useful for analyzing sales performance and other business insights. Key tables included in the package are:
- "sales": Contains data on individual sales transactions, including order details, pricing, quantities, and customer information.
- "customer": Stores customer-specific details such as demographics, geographic location, occupation, and birthday.
- "store": Provides information about stores, including location, size, status, and operational dates.
- "orders": Contains details about customer orders, including order and delivery dates, store, and customer data.
- "product": Contains data on products, including attributes such as product name, category, price, cost, and weight.
- "date": A time-based table that includes date-related attributes like year, month, quarter, day, and working day indica [...truncated...]
Author: Alejandro Hagan [aut, cre]
Maintainer: Alejandro Hagan <alejandro.hagan@outlook.com>
Diff between contoso versions 1.2.1 dated 2025-11-24 and 1.2.2 dated 2025-12-19
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- NEWS.md | 4 ++++ R/database.R | 6 ++++++ README.md | 10 +++++++--- man/figures/contoso_water_color.jpg |only 6 files changed, 26 insertions(+), 11 deletions(-)
Title: A Deep Learning for Statistical Classification and Regression
Analysis with Random Effects
Description: Statistical classification and regression have been popular among various fields and stayed in the limelight of scientists of those fields. Examples of the fields include clinical trials where the statistical classification of patients is indispensable to predict the clinical courses of diseases. Considering the negative impact of diseases on performing daily tasks, correctly classifying patients based on the clinical information is vital in that we need to identify patients of the high-risk group to develop a severe state and arrange medical treatment for them at an opportune moment. Deep learning - a part of artificial intelligence - has gained much attention, and research on it burgeons during past decades: see, e.g, Kazemi and Mirroshandel (2018) <DOI:10.1016/j.artmed.2017.12.001>. It is a veritable technique which was originally designed for the classification, and hence, the Buddle package can provide sublime solutions to various challenging classification and regression pr [...truncated...]
Author: Jiwoong Kim [aut, cre]
Maintainer: Jiwoong Kim <jwboys26@gmail.com>
Diff between Buddle versions 2.0.1 dated 2020-02-13 and 2.0.2 dated 2025-12-19
DESCRIPTION | 25 ++++--- MD5 | 16 ++--- R/BuddleMain.R | 165 +++++++++++++++++++--------------------------------- man/TrainBuddle.Rd | 3 src/Buddle.h | 1 src/Common.h | 2 src/Makevars | 19 +++++ src/Makevars.win | 17 ++++- src/RcppExports.cpp | 5 + 9 files changed, 121 insertions(+), 132 deletions(-)