Sat, 20 Dec 2025

Package DOVE updated to version 1.11 with previous version 1.10 dated 2023-12-13

Title: Durability of Vaccine Efficacy
Description: Implements maximum likelihood methods for evaluating the durability of vaccine efficacy in a randomized, placebo-controlled clinical trial with staggered enrollment of participants and potential crossover of placebo recipients before the end of the trial. Lin, D. Y., Zeng, D., and Gilbert, P. B. (2021) <doi:10.1093/cid/ciab226> and Lin, D. Y., Gu, Y., Zeng, D., Janes, H. E., and Gilbert, P. B. (2021) <doi:10.1093/cid/ciab630>.
Author: Danyu Lin [aut], Yu Gu [aut], Donglin Zeng [aut], Shannon T. Holloway [aut, cre]
Maintainer: Shannon T. Holloway <shannon.t.holloway@gmail.com>

Diff between DOVE versions 1.10 dated 2023-12-13 and 1.11 dated 2025-12-20

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Package tidypopgen updated to version 0.4.1 with previous version 0.4.0 dated 2025-10-24

Title: Tidy Population Genetics
Description: We provide a tidy grammar of population genetics, facilitating the manipulation and analysis of data on biallelic single nucleotide polymorphisms (SNPs). 'tidypopgen' scales to very large genetic datasets by storing genotypes on disk, and performing operations on them in chunks, without ever loading all data in memory. The full functionalities of the package are described in Carter et al. (2025) <doi:10.1111/2041-210x.70204>.
Author: Evie Carter [aut], Eirlys Tysall [aut], Andrea Manica [aut, cre, cph] , Chang Christopher [ctb] ), Shaun Purcell [ctb] ), Bengtsson Henrik [ctb] )
Maintainer: Andrea Manica <am315@cam.ac.uk>

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Package Rsomoclu updated to version 1.7.7 with previous version 1.7.6 dated 2022-09-26

Title: Somoclu
Description: Somoclu is a massively parallel implementation of self-organizing maps. It exploits multicore CPUs and it can be accelerated by CUDA. The topology of the map can be planar or toroid and the grid of neurons can be rectangular or hexagonal . Details refer to (Peter Wittek, et al (2017)) <doi:10.18637/jss.v078.i09>.
Author: Peter Wittek [aut], Shichao Gao [cre]
Maintainer: Shichao Gao <xgdgsc@gmail.com>

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Package PupilPre readmission to version 0.6.3 with previous version 0.6.2 dated 2020-03-10

Title: Preprocessing Pupil Size Data
Description: Pupillometric data collected using SR Research Eyelink eye trackers requires significant preprocessing. This package contains functions for preparing pupil dilation data for visualization and statistical analysis. Specifically, it provides a pipeline of functions which aid in data validation, the removal of blinks/artifacts, downsampling, and baselining, among others. Additionally, plotting functions for creating grand average and conditional average plots are provided. See the vignette for samples of the functionality. The package is designed for handling data collected with SR Research Eyelink eye trackers using Sample Reports created in SR Research Data Viewer.
Author: Aki-Juhani Kyroelaeinen [aut, cre], Vincent Porretta [aut], Jacolien van Rij [ctb], Juhani Jaervikivi [ctb]
Maintainer: Aki-Juhani Kyroelaeinen <akkyro@gmail.com>

This is a re-admission after prior archival of version 0.6.2 dated 2020-03-10

Diff between PupilPre versions 0.6.2 dated 2020-03-10 and 0.6.3 dated 2025-12-20

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Package phylospatial readmission to version 1.2.0 with previous version 1.1.1 dated 2025-05-02

Title: Spatial Phylogenetic Analysis
Description: Analyze spatial phylogenetic diversity patterns. Use your data on an evolutionary tree and geographic distributions of the terminal taxa to compute diversity and endemism metrics, test significance with null model randomization, analyze community turnover and biotic regionalization, and perform spatial conservation prioritizations. All functions support quantitative community data in addition to binary data.
Author: Matthew Kling [aut, cre, cph]
Maintainer: Matthew Kling <mattkling@berkeley.edu>

This is a re-admission after prior archival of version 1.1.1 dated 2025-05-02

Diff between phylospatial versions 1.1.1 dated 2025-05-02 and 1.2.0 dated 2025-12-20

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Package npANCOVA updated to version 0.1.1 with previous version 0.1.0 dated 2025-11-09

Title: Nonparametric ANCOVA Methods
Description: Nonparametric methods for analysis of covariance (ANCOVA) are distribution-free and provide a flexible statistical framework for situations where the assumptions of parametric ANCOVA are violated or when the response variable is ordinal. This package implements several well-known nonparametric ANCOVA procedures, including Quade, Puri and Sen, McSweeney and Porter, Burnett and Barr, Hettmansperger and McKean, Shirley, and Puri-Sen-Harwell-Serlin. The package provides user-friendly functions to apply these methods in practice. These methods are described in Olejnik et al. (1985) <doi:10.1177/0193841X8500900104> and Harwell et al. (1988) <doi:10.1037/0033-2909.104.2.268>.
Author: Mina Jahangiri [aut, cre] , Ali Taghavi Rad [aut] , Anoshirvan Kazemnejad [aut] , Keith Goldfeld [ctb] , Shayan Mostafaei [ctb]
Maintainer: Mina Jahangiri <minajahangiri984@gmail.com>

Diff between npANCOVA versions 0.1.0 dated 2025-11-09 and 0.1.1 dated 2025-12-20

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Package knitr updated to version 1.51 with previous version 1.50 dated 2025-03-16

Title: A General-Purpose Package for Dynamic Report Generation in R
Description: Provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.
Author: Yihui Xie [aut, cre] , Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Amar Al-Zubaidi [ctb], Andre Simon [ctb] , Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto [ctb] , Ben Baumer [ctb], [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>

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Package junco readmission to version 0.1.2 with previous version 0.1.1 dated 2025-07-11

Title: Create Common Tables and Listings Used in Clinical Trials
Description: Structure and formatting requirements for clinical trial table and listing outputs vary between pharmaceutical companies. 'junco' provides additional tooling for use alongside the 'rtables', 'rlistings' and 'tern' packages when creating table and listing outputs. While motivated by the specifics of Johnson and Johnson Clinical and Statistical Programming's table and listing shells, 'junco' provides functionality that is general and reusable. Major features include a) alternative and extended statistical analyses beyond what 'tern' supports for use in standard safety and efficacy tables, b) a robust production-grade Rich Text Format (RTF) exporter for both tables and listings, c) structural support for spanning column headers and risk difference columns in tables, and d) robust font-aware automatic column width algorithms for both listings and tables.
Author: Gabriel Becker [cre, aut] , Ilse Augustyns [aut], Paul Jenkins [aut], Daniel Hofstaedter [aut], Joseph Kovach [aut], David Munoz Tord [aut], Daniel Sabanes Bove [aut], Ezequiel Anokian [ctb], Renfei Mao [ctb], Mrinal Das [ctb], Wojciech Wojciak [ctb] [...truncated...]
Maintainer: Gabriel Becker <gabembecker@gmail.com>

This is a re-admission after prior archival of version 0.1.1 dated 2025-07-11

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Package AzureAuth updated to version 1.3.4 with previous version 1.3.3 dated 2021-09-13

Title: Authentication Services for Azure Active Directory
Description: Provides Azure Active Directory (AAD) authentication functionality for R users of Microsoft's 'Azure' cloud <https://azure.microsoft.com/en-us>. Use this package to obtain 'OAuth' 2.0 tokens for services including Azure Resource Manager, Azure Storage and others. It supports both AAD v1.0 and v2.0, as well as multiple authentication methods, including device code and resource owner grant. Tokens are cached in a user-specific directory obtained using the 'rappdirs' package. The interface is based on the 'OAuth' framework in the 'httr' package, but customised and streamlined for Azure. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre], Tyler Littlefield [ctb], httr development team [ctb] , Scott Holden [ctb] , Chris Stone [ctb] , Microsoft [cph]
Maintainer: Hong Ooi <hongooi73@gmail.com>

Diff between AzureAuth versions 1.3.3 dated 2021-09-13 and 1.3.4 dated 2025-12-20

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Permanent link

Package wbids updated to version 1.1.3 with previous version 1.1.2 dated 2025-11-27

Title: Seamless Access to World Bank International Debt Statistics (IDS)
Description: Access and analyze the World Bank's International Debt Statistics (IDS) <https://www.worldbank.org/en/programs/debt-statistics/ids>. IDS provides creditor-debtor relationships between countries, regions, and institutions. 'wbids' enables users to download, process and work with IDS series across multiple geographies, counterparts, and time periods.
Author: Teal Emery [aut, cre], Teal Insights [cph], Christoph Scheuch [aut] , Christopher Smith [ctb]
Maintainer: Teal Emery <lte@tealinsights.com>

Diff between wbids versions 1.1.2 dated 2025-11-27 and 1.1.3 dated 2025-12-20

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 wbids-1.1.3/wbids/man/ids_list_series_topics.Rd                |   56 
 wbids-1.1.3/wbids/man/read_bulk_info.Rd                        |   32 
 wbids-1.1.3/wbids/man/series.Rd                                |   32 
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 wbids-1.1.3/wbids/man/wbids-package.Rd                         |   70 
 wbids-1.1.3/wbids/tests/testthat.R                             |   24 
 wbids-1.1.3/wbids/tests/testthat/test-ids_bulk.R               |  808 +-
 wbids-1.1.3/wbids/tests/testthat/test-ids_bulk_files.R         |   30 
 wbids-1.1.3/wbids/tests/testthat/test-ids_bulk_series.R        |   36 
 wbids-1.1.3/wbids/tests/testthat/test-ids_get.R                | 1311 +--
 wbids-1.1.3/wbids/tests/testthat/test-ids_get_ed.R             |   16 
 wbids-1.1.3/wbids/tests/testthat/test-ids_list_counterparts.R  |   20 
 wbids-1.1.3/wbids/tests/testthat/test-ids_list_entities.R      |   48 
 wbids-1.1.3/wbids/tests/testthat/test-ids_list_series.R        |   18 
 wbids-1.1.3/wbids/tests/testthat/test-ids_list_series_topics.R |   16 
 wbids-1.1.3/wbids/tests/testthat/test-perform_request.R        |  230 
 wbids-1.1.3/wbids/tests/testthat/test-read_bulk_info.R         |   28 
 wbids-1.1.3/wbids/vignettes/data-model.Rmd                     |only
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Package emuR updated to version 2.6.0 with previous version 2.5.2 dated 2025-09-02

Title: Main Package of the EMU Speech Database Management System
Description: Provide the EMU Speech Database Management System (EMU-SDMS) with database management, data extraction, data preparation and data visualization facilities. See <https://ips-lmu.github.io/The-EMU-SDMS-Manual/> for more details.
Author: Markus Jochim [aut, cre] , Raphael Winkelmann [aut], Klaus Jaensch [aut, ctb], Steve Cassidy [aut, ctb], Jonathan Harrington [aut, ctb]
Maintainer: Markus Jochim <markusjochim@phonetik.uni-muenchen.de>

Diff between emuR versions 2.5.2 dated 2025-09-02 and 2.6.0 dated 2025-12-20

 emuR-2.5.2/emuR/R/emuR-packageDocs.R  |only
 emuR-2.6.0/emuR/DESCRIPTION           |   12 +-
 emuR-2.6.0/emuR/MD5                   |   17 ++-
 emuR-2.6.0/emuR/NEWS.md               |   10 ++
 emuR-2.6.0/emuR/R/buildtrack.R        |    2 
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 emuR-2.6.0/emuR/R/emuR-server.R       |  147 +++++++++++++++++++++++++++-------
 emuR-2.6.0/emuR/README.md             |   33 ++++++-
 emuR-2.6.0/emuR/man/buildtrack.Rd     |    2 
 emuR-2.6.0/emuR/man/emuR-package.Rd   |    4 
 emuR-2.6.0/emuR/man/rdaTrackToSsff.Rd |only
 11 files changed, 172 insertions(+), 55 deletions(-)

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Package ciftiTools updated to version 0.18.0 with previous version 0.17.4 dated 2025-01-23

Title: Tools for Reading, Writing, Viewing and Manipulating CIFTI Files
Description: CIFTI files contain brain imaging data in "grayordinates," which represent the gray matter as cortical surface vertices (left and right) and subcortical voxels (cerebellum, basal ganglia, and other deep gray matter). 'ciftiTools' provides a unified environment for reading, writing, visualizing and manipulating CIFTI-format data. It supports the "dscalar," "dlabel," and "dtseries" intents. Grayordinate data is read in as a "xifti" object, which is structured for convenient access to the data and metadata, and includes support for surface geometry files to enable spatially-dependent functionality such as static or interactive visualizations and smoothing.
Author: Amanda Mejia [aut, cre], Damon Pham [aut] , John Muschelli [ctb]
Maintainer: Amanda Mejia <mandy.mejia@gmail.com>

Diff between ciftiTools versions 0.17.4 dated 2025-01-23 and 0.18.0 dated 2025-12-20

 DESCRIPTION                              |   12 ++++-----
 MD5                                      |   41 +++++++++++++++++--------------
 NEWS.md                                  |   12 +++++++++
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 R/resample_gifti.R                       |    6 +++-
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 R/sysdata.rda                            |binary
 R/view_xifti_surface.R                   |    2 -
 R/write_cifti.R                          |    7 +++--
 R/write_nifti.R                          |   16 +++++++++++-
 README.md                                |   31 +++++++++++++++++++----
 build/vignette.rds                       |binary
 inst/doc/ciftiTools_vignette_mini.html   |   41 +++++++++++++++----------------
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 man/view_surf.Rd                         |    2 -
 man/view_xifti_surface.Rd                |    2 -
 tests/testthat/test-misc.R               |    4 +++
 tests/testthat/test-plotting_surf.R      |    2 -
 tests/testthat/test-writing.R            |   15 +++++++++++
 24 files changed, 139 insertions(+), 61 deletions(-)

More information about ciftiTools at CRAN
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Package rswipl (with last version 10.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2025-12-06 10.0.0
2025-03-21 9.3.21
2025-03-09 9.3.20
2025-01-07 9.3.18
2024-12-04 9.3.16
2024-09-29 9.3.12
2024-09-17 9.3.11
2024-07-09 9.3.7.2
2024-05-13 9.3.5.1
2024-05-01 9.3.5
2024-03-26 9.3.3.1
2024-03-16 9.3.3
2024-01-25 9.1.22
2023-10-31 9.1.17.1
2023-10-16 9.1.17
2023-09-27 9.1.16
2023-09-06 9.1.15
2023-08-07 9.1.12
2023-07-05 9.1.11
2023-05-04 9.1.9
2023-03-24 9.1.8
2023-03-19 9.1.7
2023-02-20 9.1.6
2023-01-27 9.1.4
2023-01-15 9.1.3
2022-12-20 9.1.2
2022-11-09 8.5.20

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Package rolog (with last version 0.9.23) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2025-05-19 0.9.23
2025-03-11 0.9.21
2025-02-15 0.9.20
2024-07-09 0.9.18
2024-05-01 0.9.17
2024-03-28 0.9.16
2024-03-18 0.9.15
2023-06-29 0.9.14
2023-05-08 0.9.13
2023-04-20 0.9.12
2023-01-27 0.9.11
2023-01-12 0.9.10
2023-01-06 0.9.9
2022-12-23 0.9.8
2022-11-12 0.9.6
2022-05-14 0.9.4
2022-05-04 0.9.3
2022-04-29 0.9.2
2022-04-28 0.9.1
2022-04-25 0.9

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Package mathml (with last version 1.6) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2025-08-19 1.6
2025-06-13 1.5
2025-05-18 1.4
2025-02-02 1.3
2023-07-15 1.2
2023-07-11 1.1
2023-06-29 1.0
2023-04-24 0.8
2023-04-21 0.7
2023-04-19 0.6
2023-01-17 0.5

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