Title: Image Processing Library Based on 'CImg'
Description: Fast image processing for images in up to 4 dimensions (two spatial
dimensions, one time/depth dimension, one colour dimension). Provides most
traditional image processing tools (filtering, morphology, transformations,
etc.) as well as various functions for easily analysing image data using R. The
package wraps 'CImg', <https://cimg.eu>, a simple, modern C++ library for image
processing.
Author: Simon Barthelme [aut],
David Tschumperle [ctb],
Jan Wijffels [ctb],
Haz Edine Assemlal [ctb],
Shota Ochi [ctb],
Aaron Robotham [cre],
Rodrigo Tobar [ctb]
Maintainer: Aaron Robotham <aaron.robotham@uwa.edu.au>
Diff between imager versions 1.0.5 dated 2025-08-03 and 1.0.8 dated 2025-12-23
DESCRIPTION | 8 +- MD5 | 18 +++--- NEWS.md | 2 build/vignette.rds |binary data/boats.rda |binary inst/doc/gettingstarted.Rmd | 4 - inst/doc/gettingstarted.html | 94 ++++++++++++++++----------------- inst/doc/pixsets.html | 58 ++++++++++---------- tests/testthat/test_load_save_videos.R | 2 vignettes/gettingstarted.Rmd | 4 - 10 files changed, 96 insertions(+), 94 deletions(-)
Title: Automatic Generation of Exams in R
Description: Automatic generation of exams based on exercises in Markdown or LaTeX format,
possibly including R code for dynamic generation of exercise elements.
Exercise types include single-choice and multiple-choice questions, arithmetic problems,
string questions, and combinations thereof (cloze). Output formats include standalone
files (PDF, HTML, Docx, ODT, ...), Moodle XML, QTI 1.2, QTI 2.1, Blackboard, Canvas, OpenOlat, ILIAS, TestVision,
Particify, ARSnova, Kahoot!, Grasple, and TCExam. In addition to fully customizable PDF exams, a standardized PDF format
(NOPS) is provided that can be printed, scanned, and automatically evaluated.
Author: Achim Zeileis [aut, cre] ,
Bettina Gruen [aut] ,
Friedrich Leisch [aut] ,
Nikolaus Umlauf [aut] ,
Niels Smits [aut] ,
Mirko Birbaumer [ctb],
Dominik Ernst [ctb] ,
Patrik Keller [ctb],
Reto Stauffer [ctb] ,
Kenji Sato [ctb] ,
Florian Wickelmaier [ctb] [...truncated...]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between exams versions 2.4-2 dated 2025-04-29 and 2.4-3 dated 2025-12-23
exams-2.4-2/exams/inst/xml/nops_fix.html |only exams-2.4-3/exams/DESCRIPTION | 29 exams-2.4-3/exams/MD5 | 93 exams-2.4-3/exams/NAMESPACE | 10 exams-2.4-3/exams/NEWS.md | 3134 +++++++++++++------------- exams-2.4-3/exams/R/add_cloze.R |only exams-2.4-3/exams/R/exams2ans.R | 3 exams-2.4-3/exams/R/exams2blackboard.R | 19 exams-2.4-3/exams/R/exams2moodle.R | 28 exams-2.4-3/exams/R/exams2nops.R | 86 exams-2.4-3/exams/R/exams2pdf.R | 11 exams-2.4-3/exams/R/exams2qti12.R | 4 exams-2.4-3/exams/R/exams2qti21.R | 97 exams-2.4-3/exams/R/exams2wooclap.R |only exams-2.4-3/exams/R/exams_eval.R | 9 exams-2.4-3/exams/R/fileURI.R | 46 exams-2.4-3/exams/R/formatters.R | 44 exams-2.4-3/exams/R/nops_eval.R | 12 exams-2.4-3/exams/R/nops_fix.R | 6 exams-2.4-3/exams/R/nops_scan.R | 7 exams-2.4-3/exams/R/pandoc.R | 26 exams-2.4-3/exams/R/read_metainfo.R | 24 exams-2.4-3/exams/R/search_files.R | 2 exams-2.4-3/exams/R/transformers.R | 16 exams-2.4-3/exams/R/xexams.R | 25 exams-2.4-3/exams/inst/doc/exams.pdf |binary exams-2.4-3/exams/inst/doc/exams2.R | 8 exams-2.4-3/exams/inst/doc/exams2.Rnw | 8 exams-2.4-3/exams/inst/doc/exams2.pdf |binary exams-2.4-3/exams/inst/exercises/penguins.Rmd |only exams-2.4-3/exams/inst/exercises/penguins.Rnw |only exams-2.4-3/exams/inst/nops/de.dcf | 1 exams-2.4-3/exams/inst/nops/eu.dcf |only exams-2.4-3/exams/inst/nops/nops_fix.html |only exams-2.4-3/exams/inst/pandoc/plain.tex | 12 exams-2.4-3/exams/inst/xml/ilias.xml | 15 exams-2.4-3/exams/man/add_cloze.Rd |only exams-2.4-3/exams/man/exams2ans.Rd |only exams-2.4-3/exams/man/exams2blackboard.Rd | 2 exams-2.4-3/exams/man/exams2html.Rd | 2 exams-2.4-3/exams/man/exams2ilias.Rd | 18 exams-2.4-3/exams/man/exams2moodle.Rd | 17 exams-2.4-3/exams/man/exams2nops.Rd | 51 exams-2.4-3/exams/man/exams2pdf.Rd | 2 exams-2.4-3/exams/man/exams2qti12.Rd | 8 exams-2.4-3/exams/man/exams2qti21.Rd | 8 exams-2.4-3/exams/man/exams2wooclap.Rd |only exams-2.4-3/exams/man/match_exams_call.Rd | 13 exams-2.4-3/exams/man/mchoice2string.Rd | 13 exams-2.4-3/exams/man/xexams.Rd | 2 exams-2.4-3/exams/tests/exams2nops.R |only exams-2.4-3/exams/vignettes/exams.bib | 59 exams-2.4-3/exams/vignettes/exams2.Rnw | 8 53 files changed, 2156 insertions(+), 1822 deletions(-)
Title: Integration to 'Apache' 'Arrow'
Description: 'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language
development platform for in-memory data. It specifies a standardized
language-independent columnar memory format for flat and hierarchical data,
organized for efficient analytic operations on modern hardware. This
package provides an interface to the 'Arrow C++' library.
Author: Neal Richardson [aut],
Ian Cook [aut],
Nic Crane [aut],
Dewey Dunnington [aut] ,
Romain Francois [aut] ,
Jonathan Keane [aut, cre],
Bryce Mecum [aut],
Dragoș Moldovan-Gruenfeld [aut],
Jeroen Ooms [aut],
Jacob Wujciak-Jens [aut],
Javier Luraschi [ctb], [...truncated...]
Maintainer: Jonathan Keane <jkeane@gmail.com>
Diff between arrow versions 22.0.0 dated 2025-10-29 and 22.0.0.1 dated 2025-12-23
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 8 ++++++++ inst/build_arrow_static.sh | 3 ++- src/Makevars.in | 2 +- tools/cpp/thirdparty/versions.txt | 7 +++++-- tools/nixlibs.R | 6 ++++++ 7 files changed, 31 insertions(+), 13 deletions(-)
Title: Deep Neural Networks for Survival Analysis using 'torch'
Description: Provides deep learning models for right-censored survival data using the 'torch' backend.
Supports multiple loss functions, including Cox partial likelihood, L2-penalized Cox, time-dependent Cox,
and accelerated failure time (AFT) loss. Offers a formula-based interface, built-in support for cross-validation,
hyperparameter tuning, survival curve plotting, and evaluation metrics such as the C-index, Brier score,
and integrated Brier score. For methodological details, see Kvamme et al. (2019) <https://www.jmlr.org/papers/v20/18-424.html>.
Author: Imad EL BADISY [aut, cre]
Maintainer: Imad EL BADISY <elbadisyimad@gmail.com>
Diff between survdnn versions 0.6.3 dated 2025-10-30 and 0.7.0 dated 2025-12-23
DESCRIPTION | 8 MD5 | 53 +++--- NAMESPACE | 2 NEWS.md | 69 +++++--- R/callbacks.R |only R/evaluation.R | 106 +++++++++--- R/gridsearch_survdnn.R | 77 +++++---- R/losses.R | 2 R/plot_loss.R |only R/predict.survdnn.R | 291 ++++++++++++++++++++++++++++------ R/print.survdnn.R | 7 R/summary.survdnn.R | 17 +- R/survdnn.R | 308 ++++++++++++++++++++++++++----------- R/tune_survdnn.R | 121 +++++++++----- R/zzz.R | 60 +++++++ README.md | 267 +++++++++++++++++++++++--------- man/build_dnn.Rd | 25 +-- man/callback_early_stopping.Rd |only man/cv_survdnn.Rd | 9 + man/evaluate_survdnn.Rd | 21 -- man/gridsearch_survdnn.Rd | 5 man/plot_loss.Rd |only man/predict.survdnn.Rd | 19 +- man/survdnn.Rd | 57 ++++-- man/tune_survdnn.Rd | 11 + tests/testthat/test-callbacks.R |only tests/testthat/test-device.R |only tests/testthat/test-losses.R | 37 +++- tests/testthat/test-missing-data.R |only tests/testthat/test-optimizers.R |only tests/testthat/test-plot-loss.R |only tests/testthat/test-survdnn.R | 68 +++++++- 32 files changed, 1207 insertions(+), 433 deletions(-)
Title: Generate Optimal Designs of Accelerated Life Test using
PSO-Based Algorithm
Description: A computationally efficient solution for generating optimal experimental designs in Accelerated Life Testing (ALT). Leveraging a Particle Swarm Optimization (PSO)-based hybrid algorithm, the package identifies optimal test plans that minimize estimation variance under specified failure models and stress profiles. For more detailed, see Lee et al. (2025), Optimal Robust Strategies for Accelerated Life Tests and Fatigue Testing of Polymer Composite Materials <doi:10.1214/25-AOAS2075>, and Hoang (2025), Model-Robust Minimax Design of Accelerated Life Tests via PSO-based Hybrid Algorithm, Master' Thesis, Unpublished.
Author: Hoai-Linh Hoang [aut, cre],
I-Chen Lee [aut],
Ping-Yang Chen [aut],
Ray-Bing Chen [aut],
Weng Kee Wong [aut]
Maintainer: Hoai-Linh Hoang <hoailinh.hoang17@gmail.com>
Diff between minimaxALT versions 1.0.2 dated 2025-10-10 and 1.0.3 dated 2025-12-23
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NEWS.md | 4 ++++ 3 files changed, 10 insertions(+), 6 deletions(-)
Title: Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian
Models
Description: Efficient approximate leave-one-out cross-validation (LOO)
for Bayesian models fit using Markov chain Monte Carlo, as described
in Vehtari, Gelman, and Gabry (2017) <doi:10.1007/s11222-016-9696-4>.
The approximation uses Pareto smoothed importance sampling (PSIS), a
new procedure for regularizing importance weights. As a byproduct of
the calculations, we also obtain approximate standard errors for
estimated predictive errors and for the comparison of predictive
errors between models. The package also provides methods for using
stacking and other model weighting techniques to average Bayesian
predictive distributions.
Author: Aki Vehtari [aut],
Jonah Gabry [cre, aut],
Mans Magnusson [aut],
Yuling Yao [aut],
Paul-Christian Buerkner [aut],
Topi Paananen [aut],
Andrew Gelman [aut],
Ben Goodrich [ctb],
Juho Piironen [ctb],
Bruno Nicenboim [ctb],
Leevi Lindgren [ctb],
Visruth S [...truncated...]
Maintainer: Jonah Gabry <jgabry@gmail.com>
Diff between loo versions 2.8.0 dated 2024-07-03 and 2.9.0 dated 2025-12-23
loo-2.8.0/loo/man/figures/stanlogo.png |only loo-2.8.0/loo/tests/testthat/reference-results |only loo-2.9.0/loo/DESCRIPTION | 72 loo-2.9.0/loo/MD5 | 194 loo-2.9.0/loo/NEWS.md | 19 loo-2.9.0/loo/R/E_loo.R | 13 loo-2.9.0/loo/R/crps.R | 12 loo-2.9.0/loo/R/diagnostics.R | 3 loo-2.9.0/loo/R/effective_sample_sizes.R | 85 loo-2.9.0/loo/R/kfold-helpers.R | 7 loo-2.9.0/loo/R/loo.R | 2 loo-2.9.0/loo/R/loo_compare.R | 12 loo-2.9.0/loo/R/loo_model_weights.R | 18 loo-2.9.0/loo/R/loo_moment_matching.R | 2 loo-2.9.0/loo/R/loo_subsample.R | 4 loo-2.9.0/loo/R/psis.R | 104 loo-2.9.0/loo/build/partial.rdb |binary loo-2.9.0/loo/build/vignette.rds |binary loo-2.9.0/loo/inst/CITATION | 85 loo-2.9.0/loo/inst/doc/loo2-elpd.R | 14 loo-2.9.0/loo/inst/doc/loo2-elpd.Rmd | 14 loo-2.9.0/loo/inst/doc/loo2-elpd.html | 432 -- loo-2.9.0/loo/inst/doc/loo2-example.Rmd | 9 loo-2.9.0/loo/inst/doc/loo2-example.html | 463 -- loo-2.9.0/loo/inst/doc/loo2-large-data.R | 398 +- loo-2.9.0/loo/inst/doc/loo2-large-data.html | 741 +-- loo-2.9.0/loo/inst/doc/loo2-lfo.html | 1075 ++--- loo-2.9.0/loo/inst/doc/loo2-mixis.html | 447 -- loo-2.9.0/loo/inst/doc/loo2-moment-matching.R | 48 loo-2.9.0/loo/inst/doc/loo2-moment-matching.Rmd | 48 loo-2.9.0/loo/inst/doc/loo2-moment-matching.html | 630 +-- loo-2.9.0/loo/inst/doc/loo2-non-factorized.R | 190 loo-2.9.0/loo/inst/doc/loo2-non-factorized.html | 990 +--- loo-2.9.0/loo/inst/doc/loo2-weights.html | 570 +- loo-2.9.0/loo/inst/doc/loo2-with-rstan.R | 76 loo-2.9.0/loo/inst/doc/loo2-with-rstan.html | 324 - loo-2.9.0/loo/man/E_loo.Rd | 13 loo-2.9.0/loo/man/crps.Rd | 12 loo-2.9.0/loo/man/figures/logo.svg | 97 loo-2.9.0/loo/man/loo-glossary.Rd | 6 loo-2.9.0/loo/man/loo-package.Rd | 3 loo-2.9.0/loo/man/loo_compare.Rd | 8 loo-2.9.0/loo/man/loo_model_weights.Rd | 3 loo-2.9.0/loo/man/loo_moment_match.Rd | 2 loo-2.9.0/loo/tests/testthat/_snaps |only loo-2.9.0/loo/tests/testthat/test_0_helpers.R | 47 loo-2.9.0/loo/tests/testthat/test_E_loo.R | 92 loo-2.9.0/loo/tests/testthat/test_compare.R | 170 loo-2.9.0/loo/tests/testthat/test_crps.R | 10 loo-2.9.0/loo/tests/testthat/test_deprecated_extractors.R | 121 loo-2.9.0/loo/tests/testthat/test_extract_log_lik.R | 3 loo-2.9.0/loo/tests/testthat/test_gpdfit.R | 18 loo-2.9.0/loo/tests/testthat/test_kfold_helpers.R | 106 loo-2.9.0/loo/tests/testthat/test_loo_and_waic.R | 94 loo-2.9.0/loo/tests/testthat/test_loo_approximate_posterior.R | 153 loo-2.9.0/loo/tests/testthat/test_loo_moment_matching.R | 584 ++ loo-2.9.0/loo/tests/testthat/test_loo_predictive_metric.R | 22 loo-2.9.0/loo/tests/testthat/test_loo_subsampling.R | 1982 +++++----- loo-2.9.0/loo/tests/testthat/test_loo_subsampling_approximations.R |only loo-2.9.0/loo/tests/testthat/test_loo_subsampling_cases.R |only loo-2.9.0/loo/tests/testthat/test_model_weighting.R | 104 loo-2.9.0/loo/tests/testthat/test_pointwise.R | 14 loo-2.9.0/loo/tests/testthat/test_print_plot.R | 75 loo-2.9.0/loo/tests/testthat/test_psis.R | 52 loo-2.9.0/loo/tests/testthat/test_psis_approximate_posterior.R | 166 loo-2.9.0/loo/tests/testthat/test_psislw.R | 39 loo-2.9.0/loo/tests/testthat/test_relative_eff.R | 17 loo-2.9.0/loo/tests/testthat/test_tisis.R | 102 loo-2.9.0/loo/vignettes/logo.svg |only loo-2.9.0/loo/vignettes/loo2-elpd.Rmd | 14 loo-2.9.0/loo/vignettes/loo2-example.Rmd | 9 loo-2.9.0/loo/vignettes/loo2-moment-matching.Rmd | 48 72 files changed, 5454 insertions(+), 5833 deletions(-)
Title: Linking Geographic Information Systems, Remote Sensing and Other
Command Line Tools
Description: Functions and tools for using open GIS and remote sensing command-line interfaces in a reproducible environment.
Author: Chris Reudenbach [cre, aut],
Tim Appelhans [ctb]
Maintainer: Chris Reudenbach <reudenbach@uni-marburg.de>
Diff between link2GI versions 0.6-2 dated 2024-10-28 and 0.7-2 dated 2025-12-23
link2GI-0.6-2/link2GI/R/linkOTB.R |only link2GI-0.6-2/link2GI/R/otbControls.R |only link2GI-0.6-2/link2GI/R/parseOTB.R |only link2GI-0.6-2/link2GI/man/setenvOTB.Rd |only link2GI-0.7-2/link2GI/DESCRIPTION | 18 link2GI-0.7-2/link2GI/MD5 | 133 - link2GI-0.7-2/link2GI/NAMESPACE | 12 link2GI-0.7-2/link2GI/NEWS | 39 link2GI-0.7-2/link2GI/NEWS.md | 41 link2GI-0.7-2/link2GI/R/gdalControls.R | 245 +- link2GI-0.7-2/link2GI/R/grassControl.R | 1141 ++++++---- link2GI-0.7-2/link2GI/R/initProj.R | 33 link2GI-0.7-2/link2GI/R/link2giKarim.R | 9 link2GI-0.7-2/link2GI/R/linkGDAL.R | 4 link2GI-0.7-2/link2GI/R/linkGRASS.R | 523 ++-- link2GI-0.7-2/link2GI/R/linkSAGA.R | 2 link2GI-0.7-2/link2GI/R/otb_api.R |only link2GI-0.7-2/link2GI/R/otb_link.R |only link2GI-0.7-2/link2GI/R/otb_link_dispatch.R |only link2GI-0.7-2/link2GI/R/otb_link_linux.R |only link2GI-0.7-2/link2GI/R/otb_link_windows.R |only link2GI-0.7-2/link2GI/R/otb_linux_link.R |only link2GI-0.7-2/link2GI/R/otb_linux_run.R |only link2GI-0.7-2/link2GI/R/otb_linux_search.R |only link2GI-0.7-2/link2GI/R/otb_parse.R |only link2GI-0.7-2/link2GI/R/otb_parse_legacy.R |only link2GI-0.7-2/link2GI/R/otb_run.R |only link2GI-0.7-2/link2GI/R/otb_version_select.R |only link2GI-0.7-2/link2GI/R/otb_windows_search.R |only link2GI-0.7-2/link2GI/R/sagaControl.R | 8 link2GI-0.7-2/link2GI/README.md | 90 link2GI-0.7-2/link2GI/build/vignette.rds |binary link2GI-0.7-2/link2GI/inst/doc/link2GI1.Rmd | 62 link2GI-0.7-2/link2GI/inst/doc/link2GI1.html | 183 + link2GI-0.7-2/link2GI/inst/doc/link2GI2.R | 423 ++- link2GI-0.7-2/link2GI/inst/doc/link2GI2.Rmd | 283 +- link2GI-0.7-2/link2GI/inst/doc/link2GI2.html | 474 ++-- link2GI-0.7-2/link2GI/inst/doc/link2GI3.R | 131 - link2GI-0.7-2/link2GI/inst/doc/link2GI3.Rmd | 280 +- link2GI-0.7-2/link2GI/inst/doc/link2GI3.html | 449 ++- link2GI-0.7-2/link2GI/inst/doc/link2GI4.R | 153 - link2GI-0.7-2/link2GI/inst/doc/link2GI4.Rmd | 255 +- link2GI-0.7-2/link2GI/inst/doc/link2GI4.html | 772 +++++- link2GI-0.7-2/link2GI/inst/doc/link2GI5.R |only link2GI-0.7-2/link2GI/inst/doc/link2GI5.Rmd | 331 ++ link2GI-0.7-2/link2GI/inst/doc/link2GI5.html | 445 ++- link2GI-0.7-2/link2GI/inst/doc/link2GI6.R | 1 link2GI-0.7-2/link2GI/inst/doc/link2GI6.Rmd | 211 - link2GI-0.7-2/link2GI/inst/doc/link2GI6.html | 448 +-- link2GI-0.7-2/link2GI/inst/templates/config-default-projects.yml | 126 - link2GI-0.7-2/link2GI/inst/templates/script_setup.brew | 58 link2GI-0.7-2/link2GI/man/findGRASS.Rd | 26 link2GI-0.7-2/link2GI/man/findOTB.Rd | 29 link2GI-0.7-2/link2GI/man/getrowotbVer.Rd |only link2GI-0.7-2/link2GI/man/linkGRASS.Rd | 153 - link2GI-0.7-2/link2GI/man/linkOTB.Rd | 56 link2GI-0.7-2/link2GI/man/linkOTB_linux.Rd |only link2GI-0.7-2/link2GI/man/otb_api.Rd |only link2GI-0.7-2/link2GI/man/parseOTBAlgorithms.Rd | 34 link2GI-0.7-2/link2GI/man/parseOTBFunction.Rd | 38 link2GI-0.7-2/link2GI/man/runOTB.Rd | 103 link2GI-0.7-2/link2GI/man/runOTB_isolated.Rd |only link2GI-0.7-2/link2GI/man/searchGDALX.Rd | 36 link2GI-0.7-2/link2GI/man/searchGRASSW.Rd | 56 link2GI-0.7-2/link2GI/man/searchGRASSX.Rd | 28 link2GI-0.7-2/link2GI/man/searchOTBW.Rd | 53 link2GI-0.7-2/link2GI/man/searchOTBX.Rd | 23 link2GI-0.7-2/link2GI/man/setenvGRASSw.Rd | 5 link2GI-0.7-2/link2GI/tests |only link2GI-0.7-2/link2GI/vignettes/link2GI1.Rmd | 62 link2GI-0.7-2/link2GI/vignettes/link2GI2.Rmd | 283 +- link2GI-0.7-2/link2GI/vignettes/link2GI3.Rmd | 280 +- link2GI-0.7-2/link2GI/vignettes/link2GI4.Rmd | 255 +- link2GI-0.7-2/link2GI/vignettes/link2GI5.Rmd | 331 ++ link2GI-0.7-2/link2GI/vignettes/link2GI6.Rmd | 211 - 75 files changed, 6027 insertions(+), 3418 deletions(-)
Title: Toolkit for Weighting and Analysis of Nonequivalent Groups
Description: Provides functions for propensity score
estimating and weighting, nonresponse weighting, and diagnosis
of the weights.
Author: Matthew Cefalu [aut],
Greg Ridgeway [aut],
Dan McCaffrey [aut],
Andrew Morral [aut],
Beth Ann Griffin [aut],
Lane Burgette [aut, cre]
Maintainer: Lane Burgette <burgette@rand.org>
Diff between twang versions 2.6.1 dated 2024-07-22 and 2.6.2 dated 2025-12-23
DESCRIPTION | 34 ++ MD5 | 12 R/ps.fast.R | 710 ++++++++++++++++++++++++++--------------------------- build/vignette.rds |binary inst/doc/iptw.pdf |binary inst/doc/mnps.pdf |binary inst/doc/twang.pdf |binary 7 files changed, 390 insertions(+), 366 deletions(-)
Title: Helper Functions for Creating Tutorials
Description: Helper functions for creating, editing, and testing tutorials
created with the 'learnr' package. Provides a simple method for allowing
students to download their answers to tutorial questions. For examples
of its use, see the 'r4ds.tutorials' package.
Author: David Kane [aut, cre, cph]
Maintainer: David Kane <dave.kane@gmail.com>
Diff between tutorial.helpers versions 0.6.0 dated 2025-09-11 and 0.6.1 dated 2025-12-23
DESCRIPTION | 6 MD5 | 39 NEWS.md | 8 R/make_exercise.R | 80 - README.md | 77 - build/vignette.rds |binary inst/doc/ai.html | 537 ++++----- inst/doc/ai.qmd | 51 inst/doc/instructions.html | 4 inst/doc/instructions.qmd | 4 inst/rmarkdown/templates/tutorial_template/skeleton/skeleton.Rmd | 90 + inst/tutorials/getting-started/tutorial.html | 205 +-- inst/tutorials/introduction-to-python |only inst/tutorials/introduction-to-r/tutorial.Rmd | 159 ++ inst/tutorials/introduction-to-r/tutorial.html | 564 +++++++--- tests/testthat/test-make_exercise.R | 61 - tests/testthat/test-render.R | 3 vignettes/ai.qmd | 51 vignettes/instructions.qmd | 4 19 files changed, 1275 insertions(+), 668 deletions(-)
More information about tutorial.helpers at CRAN
Permanent link
Title: An API Generator for R
Description: Gives the ability to automatically generate and serve an HTTP
API from R functions using the annotations in the R documentation
around your functions.
Author: Barret Schloerke [cre, aut] ,
Jeff Allen [aut, ccp],
Bruno Tremblay [ctb],
Frans van Dunne [ctb],
Sebastiaan Vandewoude [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Barret Schloerke <barret@posit.co>
Diff between plumber versions 1.3.1 dated 2025-12-13 and 1.3.2 dated 2025-12-23
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 7 +++++++ tests/testthat/test-zzzz-include.R | 10 ++++++++-- 4 files changed, 21 insertions(+), 8 deletions(-)
Title: Tools for Various R Functions Helpers
Description: Contains miscellaneous functions useful for managing 'NetCDF' files (see <https://en.wikipedia.org/wiki/NetCDF>), get moon phase and time for sun rise and fall, tide level, analyse and reconstruct periodic time series of temperature with irregular sinusoidal pattern, show scales and wind rose in plot with change of color of text, Metropolis-Hastings algorithm for Bayesian MCMC analysis, plot graphs or boxplot with error bars, search files in disk by there names or their content, read the contents of all files from a folder at one time.
Author: Marc Girondot [aut, cre]
Maintainer: Marc Girondot <marc.girondot@gmail.com>
Diff between HelpersMG versions 6.6 dated 2025-06-16 and 2025.12.22 dated 2025-12-23
DESCRIPTION | 13 +- MD5 | 38 ++++---- NEWS | 7 + R/HelpersMG-package.R | 4 R/IC_clean_data.R | 17 ++- R/MHalgoGen.R | 2 R/MovingWindow.R | 4 R/RandomFromHessianOrMCMC.R | 53 +++++++++-- R/as.parameters.R | 17 ++- R/as.quantiles.R | 21 +++- R/from_min_max.R | 183 ++++++++++++++++++++++++++++++++--------- R/onAttach.R | 4 R/sysdata.rda |binary inst/shiny/cutter/ui.R | 2 man/HelpersMG-package.Rd | 4 man/MovingWindow.Rd | 4 man/RandomFromHessianOrMCMC.Rd | 19 +++- man/as.quantiles.Rd | 4 man/figures/TB.png |binary man/from_min_max.Rd | 6 + 20 files changed, 289 insertions(+), 113 deletions(-)
Title: Routines for Common fMRI Processing Tasks
Description: Supports fMRI (functional magnetic resonance imaging)
analysis tasks including reading in 'CIFTI', 'GIFTI' and
'NIFTI' data, temporal filtering, nuisance regression, and
aCompCor (anatomical Components Correction) (Muschelli et al.
(2014) <doi:10.1016/j.neuroimage.2014.03.028>).
Author: Amanda Mejia [aut, cre],
Damon Pham [aut] ,
Mark Fiecas [ctb]
Maintainer: Amanda Mejia <mandy.mejia@gmail.com>
Diff between fMRItools versions 0.6.0 dated 2025-05-20 and 0.7.2 dated 2025-12-23
fMRItools-0.6.0/fMRItools/R/dim_reduce.R |only fMRItools-0.6.0/fMRItools/man/dim_reduce.Rd |only fMRItools-0.7.2/fMRItools/DESCRIPTION | 10 - fMRItools-0.7.2/fMRItools/MD5 | 22 +- fMRItools-0.7.2/fMRItools/NAMESPACE | 1 fMRItools-0.7.2/fMRItools/NEWS.md | 7 fMRItools-0.7.2/fMRItools/R/dice_overlap.R |only fMRItools-0.7.2/fMRItools/R/dual_reg_parc.R | 6 fMRItools-0.7.2/fMRItools/R/plot_FC.R | 4 fMRItools-0.7.2/fMRItools/R/plot_FC_gg.R | 143 ++++++++++++------- fMRItools-0.7.2/fMRItools/man/cor_mat.Rd | 4 fMRItools-0.7.2/fMRItools/man/dice_overlap.Rd |only fMRItools-0.7.2/fMRItools/man/plot_FC_gg.Rd | 32 ++-- fMRItools-0.7.2/fMRItools/tests/testthat/test-misc.R | 6 14 files changed, 151 insertions(+), 84 deletions(-)
Title: Build and Manipulate Study Cohorts Using a Common Data Model
Description: Create and manipulate study cohorts in data mapped to the
Observational Medical Outcomes Partnership Common Data Model.
Author: Edward Burn [aut, cre] ,
Marti Catala [aut] ,
Nuria Mercade-Besora [aut] ,
Marta Alcalde-Herraiz [aut] ,
Mike Du [aut] ,
Yuchen Guo [aut] ,
Xihang Chen [aut] ,
Kim Lopez-Guell [aut] ,
Elin Rowlands [aut]
Maintainer: Edward Burn <edward.burn@ndorms.ox.ac.uk>
Diff between CohortConstructor versions 0.6.0 dated 2025-10-31 and 0.6.1 dated 2025-12-23
DESCRIPTION | 20 MD5 | 197 +-- NAMESPACE | 1 R/addIndex.R | 6 R/collapseCohorts.R | 12 R/conceptCohort.R | 13 R/copyCohorts.R | 2 R/deathCohort.R | 5 R/demographicsCohort.R | 2 R/entryAtColumnDate.R | 4 R/exitAtColumnDate.R | 4 R/exitAtDate.R | 4 R/intersectCohorts.R | 2 R/matchCohorts.R | 2 R/measurementCohort.R | 2 R/mockCohortConstructor.R | 31 R/padCohortDate.R | 6 R/renameCohort.R | 2 R/requireCohortIntersect.R | 2 R/requireConceptIntersect.R | 4 R/requireDateRange.R | 38 R/requireDemographics.R | 10 R/requireDuration.R | 4 R/requireIsEntry.R | 6 R/requireMinCohortCount.R | 2 R/requireTableIntersect.R | 2 R/sampleCohorts.R | 2 R/stratifyCohorts.R | 2 R/subsetCohorts.R | 2 R/timeWindowCohorts.R |only R/trimDemographics.R | 2 R/unionCohorts.R | 8 R/yearCohorts.R | 2 README.md | 61 build/vignette.rds |binary inst/doc/a01_building_base_cohorts.html | 17 inst/doc/a02_cohort_table_requirements.R | 248 ++- inst/doc/a02_cohort_table_requirements.Rmd | 12 inst/doc/a02_cohort_table_requirements.html | 1744 ---------------------------- inst/doc/a03_require_demographics.R | 119 - inst/doc/a03_require_demographics.Rmd | 9 inst/doc/a03_require_demographics.html | 1298 -------------------- inst/doc/a04_require_intersections.html | 5 inst/doc/a05_update_cohort_start_end.R | 163 +- inst/doc/a05_update_cohort_start_end.Rmd | 11 inst/doc/a05_update_cohort_start_end.html | 130 -- inst/doc/a06_concatanate_cohorts.html | 5 inst/doc/a07_filter_cohorts.html | 5 inst/doc/a08_split_cohorts.html | 5 inst/doc/a09_combine_cohorts.html | 5 inst/doc/a10_match_cohorts.html | 5 inst/doc/a11_benchmark.html | 5 inst/doc/a12_behind_the_scenes.html | 5 man/addCohortTableIndex.Rd | 7 man/collapseCohorts.Rd | 13 man/conceptCohort.Rd | 2 man/copyCohorts.Rd | 2 man/deathCohort.Rd | 5 man/demographicsCohort.Rd | 2 man/entryAtFirstDate.Rd | 2 man/entryAtLastDate.Rd | 2 man/exitAtDeath.Rd | 2 man/exitAtFirstDate.Rd | 2 man/exitAtLastDate.Rd | 2 man/exitAtObservationEnd.Rd | 2 man/intersectCohorts.Rd | 2 man/matchCohorts.Rd | 2 man/mockCohortConstructor.Rd | 2 man/padCohortDate.Rd | 2 man/padCohortEnd.Rd | 2 man/padCohortStart.Rd | 2 man/renameCohort.Rd | 2 man/requireAge.Rd | 2 man/requireCohortIntersect.Rd | 2 man/requireConceptIntersect.Rd | 4 man/requireDemographics.Rd | 2 man/requireDuration.Rd | 2 man/requireFutureObservation.Rd | 2 man/requireInDateRange.Rd | 18 man/requireIsEntry.Rd | 2 man/requireIsFirstEntry.Rd | 2 man/requireIsLastEntry.Rd | 2 man/requireMinCohortCount.Rd | 2 man/requirePriorObservation.Rd | 2 man/requireSex.Rd | 2 man/requireTableIntersect.Rd | 2 man/sampleCohorts.Rd | 2 man/stratifyCohorts.Rd | 2 man/subsetCohorts.Rd | 2 man/timeWindowCohorts.Rd |only man/trimDemographics.Rd | 2 man/trimDuration.Rd | 2 man/trimToDateRange.Rd | 20 man/unionCohorts.Rd | 2 man/yearCohorts.Rd | 2 tests/testthat/test-conceptCohort.R | 33 tests/testthat/test-unionCohorts.R | 17 tests/testthat/timeWindowCohorts.R |only vignettes/a02_cohort_table_requirements.Rmd | 12 vignettes/a03_require_demographics.Rmd | 9 vignettes/a05_update_cohort_start_end.Rmd | 11 101 files changed, 685 insertions(+), 3787 deletions(-)
More information about CohortConstructor at CRAN
Permanent link
Title: Bayesian Variable Selection and Model Averaging using Bayesian
Adaptive Sampling
Description: Package for Bayesian Variable Selection and Model Averaging
in linear models and generalized linear models using stochastic or
deterministic sampling without replacement from posterior
distributions. Prior distributions on coefficients are
from Zellner's g-prior or mixtures of g-priors
corresponding to the Zellner-Siow Cauchy Priors or the
mixture of g-priors from Liang et al (2008)
<DOI:10.1198/016214507000001337>
for linear models or mixtures of g-priors from Li and Clyde
(2019) <DOI:10.1080/01621459.2018.1469992> in generalized linear models.
Other model selection criteria include AIC, BIC and Empirical Bayes
estimates of g. Sampling probabilities may be updated based on the sampled
models using sampling w/out replacement or an efficient MCMC algorithm which
samples models using a tree structure of the model space
as an efficient hash table. See Clyde, Ghosh and Littman (2010)
<DOI:10.1198/jcgs.2010.09049> for details on the sampling algorithms.
Uniform prior [...truncated...]
Author: Merlise Clyde [aut, cre, cph] ,
Michael Littman [ctb],
Joyee Ghosh [ctb],
Yingbo Li [ctb],
Betsy Bersson [ctb],
Don van de Bergh [ctb],
Quanli Wang [ctb]
Maintainer: Merlise Clyde <clyde@duke.edu>
Diff between BAS versions 2.0.0 dated 2025-12-16 and 2.0.2 dated 2025-12-23
DESCRIPTION | 6 +- MD5 | 38 ++++++------ NEWS.md | 13 ++++ inst/doc/BAS-vignette.html | 132 ++++++++++++++++++++++----------------------- man/tr.power.prior.Rd | 10 +-- src/glm_deterministic.c | 14 ++++ src/glm_mcmc.c | 10 +++ src/glm_mcmc_grow.c | 9 +++ src/glm_mcmcbas.c | 8 ++ src/glm_sampleworep.c | 12 ++++ src/glm_sampleworep_grow.c | 13 ++++ src/lm_amcmc.c | 13 ++++ src/lm_amcmc_growable.c | 18 ++++-- src/lm_deterministic.c | 10 +++ src/lm_mcmc.c | 14 ++++ src/lm_mcmc_grow.c | 10 +++ src/lm_mcmcbas.c | 14 ++++ src/lm_sampleworep-grow.c | 11 +++ src/lm_sampleworep.c | 11 +++ src/model_probabilities.c | 7 +- 20 files changed, 263 insertions(+), 110 deletions(-)