Title: Convenient Access to NYC Open Data API Endpoints
Description: Provides a unified set of helper functions to access datasets
from the NYC Open Data platform <https://opendata.cityofnewyork.us/>.
Functions return results as tidy tibbles and support optional filtering,
sorting, and row limits via the Socrata API. The package includes endpoints
for 311 service requests, DOB job applications, juvenile justice metrics,
school safety, environmental data, event permitting, and additional
citywide datasets.
Author: Christian Martinez [aut, cre]
Maintainer: Christian Martinez <c.martinez0@outlook.com>
Diff between nycOpenData versions 0.1.2 dated 2025-11-17 and 0.1.3 dated 2026-01-09
DESCRIPTION | 6 +- MD5 | 52 +++++++++++++++++++-- NEWS.md | 36 -------------- R/nyc_2015_2018_school_discharge_report.R |only R/nyc_311.R | 6 +- R/nyc_any_dataset.R |only R/nyc_cause_of_death.R |only R/nyc_city_record.R |only R/nyc_daily_attendance_2018_2019.R |only R/nyc_dhs_daily_report.R |only R/nyc_dob_permit_issuance.R |only R/nyc_domestic_violence_annual_report.R |only R/nyc_film_permits.R |only R/nyc_homeless_drop_in_centers.R |only R/nyc_homeless_population_by_year.R |only R/nyc_medallion_drivers_active.R |only R/nyc_medallion_drivers_authorized.R |only R/nyc_motor_vehicle_collisions_crashes.R |only R/nyc_museum_locations.R |only R/nyc_open_parking_camera_violations.R |only R/nyc_period_attendance_reporting.R |only R/nyc_pets_in_shelters.R |only R/nyc_restaurant_inspection_results.R |only R/nyc_runaway_and_homeless_youth_daily_census.R |only R/nyc_school_discharge_report_2013_2015.R |only R/nyc_street_hail_livery_active.R |only man/nyc_311.Rd | 6 +- man/nyc_any_dataset.Rd |only man/nyc_cause_of_death.Rd |only man/nyc_city_record.Rd |only man/nyc_daily_attendance_2018_2019.Rd |only man/nyc_dhs_daily_report.Rd |only man/nyc_dob_permit_issuance.Rd |only man/nyc_domestic_violence_annual_report.Rd |only man/nyc_film_permits.Rd |only man/nyc_homeless_drop_in_centers.Rd |only man/nyc_homeless_population_by_year.Rd |only man/nyc_medallion_drivers_active.Rd |only man/nyc_medallion_drivers_authorized.Rd |only man/nyc_motor_vehicle_collisions_crashes.Rd |only man/nyc_museum_locations.Rd |only man/nyc_open_parking_camera_violations.Rd |only man/nyc_period_attendance_reporting.Rd |only man/nyc_pets_in_shelters.Rd |only man/nyc_restaurant_inspection_results.Rd |only man/nyc_runaway_and_homeless_youth_daily_census.Rd |only man/nyc_school_discharge_report_2013_2015.Rd |only man/nyc_school_discharge_report_2015_2018.Rd |only man/nyc_street_hail_livery_active.Rd |only 49 files changed, 59 insertions(+), 47 deletions(-)
Title: Methods for ''A Fast Alternative for the R x C Ecological
Inference Case''
Description: Estimates the probability matrix for the R×C Ecological Inference problem using the Expectation-Maximization Algorithm with four approximation methods for the E-Step, and an exact method as well. It also provides a bootstrap function to estimate the standard deviation of the estimated probabilities. In addition, it has functions that aggregate rows optimally to have more reliable estimates in cases of having few data points. For comparing the probability estimates of two groups, a Wald test routine is implemented. The library has data from the first round of the Chilean Presidential Election 2021 and can also generate synthetic election data. Methods described in Thraves, Charles; Ubilla, Pablo; Hermosilla, Daniel (2024) ''A Fast Ecological Inference Algorithm for the R×C case'' <doi:10.2139/ssrn.4832834>.
Author: Charles Thraves [aut] ,
Pablo Ubilla [aut] ,
Daniel Hermosilla [aut, cre]
Maintainer: Daniel Hermosilla <daniel.hermosilla.r@ug.uchile.cl>
Diff between fastei versions 0.0.0.11 dated 2025-11-22 and 0.0.0.12 dated 2026-01-09
fastei-0.0.0.11/fastei/inst/COPYRIGHTS |only fastei-0.0.0.11/fastei/src/uthash.h |only fastei-0.0.0.12/fastei/DESCRIPTION | 12 - fastei-0.0.0.12/fastei/LICENSE | 2 fastei-0.0.0.12/fastei/MD5 | 43 +++--- fastei-0.0.0.12/fastei/R/eim-class.R | 21 +++ fastei-0.0.0.12/fastei/inst/doc/demonstration.html | 22 +-- fastei-0.0.0.12/fastei/man/bootstrap.Rd | 2 fastei-0.0.0.12/fastei/src/MCMC.c | 84 +++++++++---- fastei-0.0.0.12/fastei/src/MCMC.h | 1 fastei-0.0.0.12/fastei/src/RcppExports.cpp | 2 fastei-0.0.0.12/fastei/src/bootstrap.c | 21 ++- fastei-0.0.0.12/fastei/src/bootstrap.h | 6 fastei-0.0.0.12/fastei/src/dynamic_program.c | 2 fastei-0.0.0.12/fastei/src/globals.h | 1 fastei-0.0.0.12/fastei/src/main.c | 133 +++++++++++++++++---- fastei-0.0.0.12/fastei/src/main.h | 6 fastei-0.0.0.12/fastei/src/multinomial.c | 21 ++- fastei-0.0.0.12/fastei/src/multivariate-pdf.c | 58 ++++++++- fastei-0.0.0.12/fastei/src/stb_ds.h |only fastei-0.0.0.12/fastei/src/utils_hash.c | 51 ++------ fastei-0.0.0.12/fastei/src/utils_hash.h | 18 -- fastei-0.0.0.12/fastei/src/wrapper.cpp | 30 +++- fastei-0.0.0.12/fastei/src/wrapper.h | 19 +-- 24 files changed, 372 insertions(+), 183 deletions(-)
Title: 'shiny' Application to Use the Stochastic Block Model
Description: A 'shiny' interface for a simpler use of the 'sbm' R package.
It also contains useful functions to easily explore the 'sbm' package
results. With this package you should be able to use the stochastic
block model without any knowledge in R, get automatic reports and nice
visuals, as well as learning the basic functions of 'sbm'.
Author: Theodore Vanrenterghem [aut],
Julie Aubert [aut, cre] ,
Saint-Clair Chabert-Liddell [aut] ,
grossBM team [ctb],
INRAE [cph]
Maintainer: Julie Aubert <julie.aubert@inrae.fr>
Diff between shinySbm versions 0.1.4 dated 2023-09-07 and 0.2.0 dated 2026-01-09
DESCRIPTION | 67 LICENSE | 4 MD5 | 186 NAMESPACE | 86 R/FungusTreeNetwork.R | 77 R/app_config.R | 88 R/app_server.R | 126 R/fct_ICL_plot.R | 130 R/fct_adjacency_to_edges.R | 592 - R/fct_errorHandeling.R | 234 R/fct_flextables.R | 582 - R/fct_get_Blocks.R | 10 R/fct_is_bipartite.R | 158 R/fct_plotSbm.R | 8 R/fct_sbmMatrixClass.R | 1338 +-- R/fct_shapes_list.R | 30 R/fct_specific_css_style.R | 162 R/fct_visSbm.R | 952 +- R/golem_utils_server.R | 126 R/golem_utils_ui.R | 810 +- R/mod_help_to_import.R | 285 R/mod_network_code.R | 296 R/mod_sbm_code.R | 222 R/mod_select_nb_groups.R | 298 R/mod_show_code.R | 284 R/mod_show_group_names.R | 86 R/mod_tab_about_us.R | 160 R/mod_tab_extraction.R | 462 - R/mod_tab_network.R | 712 - R/mod_tab_report.R | 256 R/mod_tab_show.R | 674 - R/mod_tab_upload.R | 6 R/mod_upload_code.R | 184 R/shinySbm-package.R |only R/utils-pipe.R | 28 README.md | 184 build/vignette.rds |binary data/FungusTreeNetwork.rda |binary inst/app/www/README.html | 978 +- inst/app/www/style.css | 22 inst/doc/ShinySbmApp.R | 116 inst/doc/ShinySbmApp.Rmd | 238 inst/doc/ShinySbmApp.html |11562 ++++++++++++++--------------- inst/golem-config.yml | 16 inst/r_files/R_template.R | 82 inst/rmd/child_empty_en.Rmd | 6 inst/rmd/child_empty_fr.Rmd | 6 inst/rmd/child_imported_en.Rmd | 12 inst/rmd/child_imported_fr.Rmd | 12 inst/rmd/child_imported_visual.Rmd | 18 inst/rmd/child_sbm_en.Rmd | 246 inst/rmd/child_sbm_fr.Rmd | 252 inst/rmd/child_sbm_visual.Rmd | 38 inst/rmd/child_setup.Rmd | 96 inst/rmd/summary_template_en.Rmd | 116 inst/rmd/summary_template_fr.Rmd | 116 inst/tables/shape_list.csv | 8 man/FungusTreeNetwork.Rd | 90 man/get_adjacency.Rd | 94 man/get_adjacency.default.Rd | 94 man/get_block.BipartiteSBM_fit.Rd | 100 man/get_block.Rd | 134 man/get_block.SimpleSBM_fit.Rd | 92 man/get_flextable.Rd | 138 man/plotSbm.BipartiteSBM_fit.Rd | 114 man/plotSbm.Rd | 160 man/plotSbm.SimpleSBM_fit.Rd | 114 man/plotSbm.default.Rd | 62 man/plotSbm.matrix.Rd | 112 man/shinySbm-package.Rd |only man/shinySbmApp.Rd | 100 man/visSbm.BipartiteSBM_fit.Rd | 152 man/visSbm.Rd | 186 man/visSbm.SimpleSBM_fit.Rd | 144 man/visSbm.default.Rd | 106 tests/spelling.R | 6 tests/testthat.R | 24 tests/testthat/test-golem-recommended.R | 148 tests/testthat/test-golem_utils_server.R | 108 tests/testthat/test-golem_utils_ui.R | 348 tests/testthat/test-mod_help_to_import.R | 76 tests/testthat/test-mod_network_code.R | 76 tests/testthat/test-mod_sbm_code.R | 76 tests/testthat/test-mod_select_nb_groups.R | 76 tests/testthat/test-mod_show_code.R | 76 tests/testthat/test-mod_show_group_names.R | 76 tests/testthat/test-mod_tab_about_us.R | 76 tests/testthat/test-mod_tab_extraction.R | 76 tests/testthat/test-mod_tab_network.R | 76 tests/testthat/test-mod_tab_report.R | 76 tests/testthat/test-mod_tab_sbm.R | 76 tests/testthat/test-mod_tab_show.R | 76 tests/testthat/test-mod_tab_upload.R | 76 tests/testthat/test-mod_upload_code.R | 76 vignettes/ShinySbmApp.Rmd | 238 95 files changed, 13879 insertions(+), 13892 deletions(-)
Title: Shrinkage Estimation Methods for Vector Autoregressive Models
Description: Vector autoregressive (VAR) model is a fundamental and effective approach
for multivariate time series analysis. Shrinkage estimation methods can be
applied to high-dimensional VAR models with dimensionality greater than
the number of observations, contrary to the standard ordinary least squares
method. This package is an integrative package delivering nonparametric,
parametric, and semiparametric methods in a unified and consistent manner,
such as the multivariate ridge regression in Golub, Heath, and Wahba (1979)
<doi:10.2307/1268518>, a James-Stein type nonparametric shrinkage method in
Opgen-Rhein and Strimmer (2007) <doi:10.1186/1471-2105-8-S2-S3>, and
Bayesian estimation methods using noninformative and informative priors
in Lee, Choi, and S.-H. Kim (2016) <doi:10.1016/j.csda.2016.03.007> and
Ni and Sun (2005) <doi:10.1198/073500104000000622>.
Author: Namgil Lee [aut, cre, cph] ,
Heon Young Yang [ctb],
Sung-Ho Kim [aut, cph]
Maintainer: Namgil Lee <namgil.lee@kangwon.ac.kr>
Diff between VARshrink versions 0.3.1 dated 2019-10-09 and 0.3.3 dated 2026-01-09
VARshrink-0.3.1/VARshrink/NEWS.md |only VARshrink-0.3.1/VARshrink/R/BQ_sh.R |only VARshrink-0.3.1/VARshrink/R/arch.test_sh.R |only VARshrink-0.3.1/VARshrink/R/fevd.varshrinkest.R |only VARshrink-0.3.1/VARshrink/R/h_boot.R |only VARshrink-0.3.1/VARshrink/R/h_fecov.R |only VARshrink-0.3.1/VARshrink/R/h_irf.R |only VARshrink-0.3.1/VARshrink/R/normality.test_sh.R |only VARshrink-0.3.1/VARshrink/R/plot.varshirf.R |only VARshrink-0.3.1/VARshrink/R/predict.varshrinkest.R |only VARshrink-0.3.1/VARshrink/man/BQ_sh.Rd |only VARshrink-0.3.1/VARshrink/man/arch.test_sh.Rd |only VARshrink-0.3.1/VARshrink/man/fevd.varshrinkest.Rd |only VARshrink-0.3.1/VARshrink/man/normality.test_sh.Rd |only VARshrink-0.3.1/VARshrink/man/predict.varshrinkest.Rd |only VARshrink-0.3.3/VARshrink/DESCRIPTION | 24 VARshrink-0.3.3/VARshrink/MD5 | 134 VARshrink-0.3.3/VARshrink/NAMESPACE | 11 VARshrink-0.3.3/VARshrink/R/Acoef_sh.R | 79 VARshrink-0.3.3/VARshrink/R/Bcoef_sh.R | 100 VARshrink-0.3.3/VARshrink/R/Phi.varshrinkest.R | 104 VARshrink-0.3.3/VARshrink/R/Psi.varshrinkest.R | 34 VARshrink-0.3.3/VARshrink/R/VARshrink.R | 713 - VARshrink-0.3.3/VARshrink/R/calcSSE_Acoef.R | 75 VARshrink-0.3.3/VARshrink/R/causality_sh.R | 56 VARshrink-0.3.3/VARshrink/R/convPsi2varresult.R | 238 VARshrink-0.3.3/VARshrink/R/createVARCoefs_ltriangular.R | 161 VARshrink-0.3.3/VARshrink/R/irf.varshrinkest.R | 132 VARshrink-0.3.3/VARshrink/R/lm_ShVAR_KCV.R | 476 - VARshrink-0.3.3/VARshrink/R/lm_full_Bayes_SR.R | 562 - VARshrink-0.3.3/VARshrink/R/lm_multiv_ridge.R | 137 VARshrink-0.3.3/VARshrink/R/lm_semi_Bayes_PCV.R | 527 - VARshrink-0.3.3/VARshrink/R/logLik.varshrinkest.R | 94 VARshrink-0.3.3/VARshrink/R/print.varshrinkest.R | 138 VARshrink-0.3.3/VARshrink/R/print.varshsum.R | 149 VARshrink-0.3.3/VARshrink/R/restrict_sh.R | 57 VARshrink-0.3.3/VARshrink/R/roots_sh.R | 77 VARshrink-0.3.3/VARshrink/R/serial.test_sh.R | 59 VARshrink-0.3.3/VARshrink/R/shrinkVARcoef.R | 320 VARshrink-0.3.3/VARshrink/R/simVARmodel.R | 122 VARshrink-0.3.3/VARshrink/R/stability_sh.R | 79 VARshrink-0.3.3/VARshrink/R/summary.shrinklm.R | 245 VARshrink-0.3.3/VARshrink/R/summary.varshrinkest.R | 118 VARshrink-0.3.3/VARshrink/README.md | 65 VARshrink-0.3.3/VARshrink/build/vignette.rds |binary VARshrink-0.3.3/VARshrink/inst/doc/article_html_varshrink.R | 228 VARshrink-0.3.3/VARshrink/inst/doc/article_html_varshrink.Rmd | 1273 +-- VARshrink-0.3.3/VARshrink/inst/doc/article_html_varshrink.html | 3897 +++++----- VARshrink-0.3.3/VARshrink/man/Acoef_sh.Rd | 71 VARshrink-0.3.3/VARshrink/man/Bcoef_sh.Rd | 69 VARshrink-0.3.3/VARshrink/man/Phi.varshrinkest.Rd | 59 VARshrink-0.3.3/VARshrink/man/VARshrink.Rd | 157 VARshrink-0.3.3/VARshrink/man/calcSSE_Acoef.Rd | 70 VARshrink-0.3.3/VARshrink/man/causality_sh.Rd | 62 VARshrink-0.3.3/VARshrink/man/convPsi2varresult.Rd | 138 VARshrink-0.3.3/VARshrink/man/createVARCoefs_ltriangular.Rd | 113 VARshrink-0.3.3/VARshrink/man/irf.varshrinkest.Rd | 121 VARshrink-0.3.3/VARshrink/man/lm_ShVAR_KCV.Rd | 105 VARshrink-0.3.3/VARshrink/man/lm_full_Bayes_SR.Rd | 111 VARshrink-0.3.3/VARshrink/man/lm_multiv_ridge.Rd | 75 VARshrink-0.3.3/VARshrink/man/lm_semi_Bayes_PCV.Rd | 141 VARshrink-0.3.3/VARshrink/man/logLik.varshrinkest.Rd | 60 VARshrink-0.3.3/VARshrink/man/print.varshrinkest.Rd | 45 VARshrink-0.3.3/VARshrink/man/print.varshsum.Rd | 53 VARshrink-0.3.3/VARshrink/man/restrict_sh.Rd | 66 VARshrink-0.3.3/VARshrink/man/roots_sh.Rd | 57 VARshrink-0.3.3/VARshrink/man/serial.test_sh.Rd | 65 VARshrink-0.3.3/VARshrink/man/shrinkVARcoef.Rd | 85 VARshrink-0.3.3/VARshrink/man/simVARmodel.Rd | 71 VARshrink-0.3.3/VARshrink/man/stability_sh.Rd | 73 VARshrink-0.3.3/VARshrink/man/summary.shrinklm.Rd | 55 VARshrink-0.3.3/VARshrink/man/summary.varshrinkest.Rd | 77 VARshrink-0.3.3/VARshrink/vignettes/article_html_varshrink.Rmd | 1273 +-- VARshrink-0.3.3/VARshrink/vignettes/bibVARshrink.bib | 1094 +- VARshrink-0.3.3/VARshrink/vignettes/table2_modeldemo.RData |only VARshrink-0.3.3/VARshrink/vignettes/table3_modelcomp.RData |binary 76 files changed, 7885 insertions(+), 6965 deletions(-)
Title: Simplified Statistical Procedures for Social Sciences
Description: Simplifies functions assess normality for bivariate and multivariate statistical techniques. Includes functions designed to replicate plots and tables that would result from similar calls in 'SPSS', including hst(), box(), qq(), tab(), cormat(), and residplot(). Also includes simplified formulae, such as mode(), scatter(), p.corr(), ow.anova(), and rm.anova().
Author: Burrel Vann Jr [aut, cre]
Maintainer: Burrel Vann Jr <bvannjr@sdsu.edu>
Diff between vannstats versions 1.5.4.07 dated 2025-04-08 and 1.6.1.08 dated 2026-01-09
DESCRIPTION | 13 +- MD5 | 30 +++-- NAMESPACE | 5 R/chi.sq.R | 251 +++++++++++++++++++++++++++++++++++++------- R/chiplot.R |only R/data.R | 2 R/is.t.R |only R/summary.ist.R |only data/Defendants2025.RData |binary data/GSS2014.RData |binary data/UCR2015.RData |binary data/WBBN2019.RData |binary data/howell_aids_long.RData |binary data/howell_aids_wide.RData |binary man/GSS2014.Rd | 2 man/chi.sq.Rd | 12 +- man/chiplot.Rd |only man/is.t.Rd |only man/summary.ist.Rd |only 19 files changed, 258 insertions(+), 57 deletions(-)
Title: Density and Abundance from Distance-Sampling Surveys
Description: Distance-sampling (<doi:10.1007/978-3-319-19219-2>)
is a field survey and analytical method that estimates density and
abundance of survey targets (e.g., animals) when
detection probability declines with observation distance.
Distance-sampling is popular in ecology,
especially when survey targets are observed from aerial platforms (e.g.,
airplane or drone), surface vessels (e.g., boat or truck), or along
walking transects. Analysis involves fitting smooth (parametric) curves to
histograms of observation distances and using those functions to
adjust density estimates for missed targets. Routines included here
fit curves to observation distance histograms, estimate effective
sampling area, density of targets in surveyed areas, and the abundance
of targets in a surrounding study area. Confidence interval estimation
uses built-in bootstrap resampling. Help files are extensive and have been
vetted by multiple authors. Many tutorials are available on the package's
website (URL below).
Author: Trent McDonald [cre, aut],
Jason Carlisle [aut],
Aidan McDonald [aut] ,
Ryan Nielson [ctb] ,
Ben Augustine [ctb] ,
James Griswald [ctb] ,
Patrick McKann [ctb] ,
Lacey Jeroue [ctb] ,
Hoffman Abigail [ctb] ,
Kleinsausser Michael [ctb] ,
Joel Reynolds [ [...truncated...]
Maintainer: Trent McDonald <trent@mcdonalddatasciences.com>
Diff between Rdistance versions 4.1.1 dated 2025-12-03 and 4.3.0 dated 2026-01-09
DESCRIPTION | 10 +- MD5 | 100 ++++++++++++--------- NAMESPACE | 8 + NEWS.md | 22 ++++ R/ESW.r | 8 + R/Gamma.like.R |only R/Gamma.start.limits.R |only R/GammaModes.R |only R/GammaReparam.R |only R/abundEstim.R | 132 ++++++++++++---------------- R/bootstrap.R |only R/dE.single.R | 8 - R/differentiableLikelihoods.R | 2 R/estimateN.r | 5 - R/getNCores.R |only R/gxEstim.r | 59 ++---------- R/halfnorm.like.R | 38 +++----- R/integrateDfuncs.R |only R/integrateGammaLines.R |only R/integrateHalfnormLines.R | 1 R/integrateHalfnormPoints.R | 1 R/integrateKey.R | 90 +++++++++++++------ R/integrateNegexpLines.R | 1 R/integrateNegexpPoints.R | 1 R/integrateOneStepPoints.R | 18 ++- R/likeParamNames.r | 6 - R/nLL.R | 192 ++++++++++------------------------------- R/negexp.like.R | 2 R/oneBsIter.R | 69 +++++--------- R/parseModel.R | 48 ++++++---- R/predDfuncs.R | 60 +++++------- R/predict.dfunc.R | 21 +--- R/zzz.R | 1 man/Gamma.like.Rd |only man/Gamma.start.limits.Rd |only man/GammaModes.Rd |only man/GammaReparam.Rd |only man/abundEstim.Rd | 53 +++++++---- man/autoDistSamp.Rd | 7 - man/bootstrap.Rd |only man/estimateN.Rd | 7 - man/getNCores.Rd |only man/halfnorm.like.Rd | 17 +-- man/hazrate.like.Rd | 9 + man/integrateDfuncs.Rd |only man/integrateGammaLines.Rd |only man/integrateHalfnormLines.Rd | 21 ++-- man/integrateHalfnormPoints.Rd | 21 ++-- man/integrateHazrateLines.Rd | 20 ++-- man/integrateKey.Rd | 10 -- man/integrateNegexpLines.Rd | 21 ++-- man/integrateNegexpPoints.Rd | 21 ++-- man/integrateNumeric.Rd | 20 ++-- man/integrateOneStepLines.Rd | 20 ++-- man/integrateOneStepNumeric.Rd | 20 ++-- man/integrateOneStepPoints.Rd | 20 ++-- man/negexp.like.Rd | 11 +- man/oneBsIter.Rd | 136 +++++------------------------ man/oneStep.like.Rd | 9 + 59 files changed, 609 insertions(+), 737 deletions(-)
Title: Model Menu for Radiant: Business Analytics using R and Shiny
Description: The Radiant Model menu includes interfaces for linear and logistic
regression, naive Bayes, neural networks, classification and regression trees,
model evaluation, collaborative filtering, decision analysis, and simulation.
The application extends the functionality in 'radiant.data'.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
This is a re-admission after prior archival of version 1.6.8 dated 2025-10-01
Diff between radiant.model versions 1.6.8 dated 2025-10-01 and 1.6.9 dated 2026-01-09
radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/cf_summary.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/dtree_model.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/dtree_plot_final.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/dtree_plot_initial.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/dtree_sensitivity.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/evalbin_confusion.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/evalbin_lift_gains.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/evalbin_logistic.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/evalreg_nn.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/evalreg_summary_plot.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/logistic_dvd-full.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/logistic_dvd.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/logistic_plot.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/logistic_predict.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/logistic_predict_data.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/logistic_summary.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/mnl_choice_shares.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/mnl_plot.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/mnl_predict.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/mnl_summary.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_catalog_F_critical.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_catalog_F_test.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_catalog_prob_calc.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_catalog_summary.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_diamonds_corr.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_diamonds_dashboard.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_diamonds_hist.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_diamonds_res_vs_pred.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_diamonds_scatter.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_ideal_corr.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_ideal_dashboard.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_ideal_hist.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_ideal_res_vs_pred.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_ideal_scatter.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_ideal_summary.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_log_diamonds_corr.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_log_diamonds_dashboard.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_log_diamonds_hist.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_log_diamonds_res_vs_pred.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_log_diamonds_scatter.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_log_diamonds_summary.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/regress_log_diamonds_viz_scatter.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/simulater_repeat.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/simulater_repeat_plot.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/simulater_sim.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/simulater_sim_plot.png |only radiant.model-1.6.8/radiant.model/inst/app/tools/help/figures/simulater_view.png |only radiant.model-1.6.9/radiant.model/DESCRIPTION | 15 - radiant.model-1.6.9/radiant.model/MD5 | 90 ++-------- radiant.model-1.6.9/radiant.model/NAMESPACE | 1 radiant.model-1.6.9/radiant.model/R/crtree.R | 3 radiant.model-1.6.9/radiant.model/R/gbt.R | 51 +++-- radiant.model-1.6.9/radiant.model/R/logistic.R | 3 radiant.model-1.6.9/radiant.model/R/nn.R | 11 + radiant.model-1.6.9/radiant.model/R/regress.R | 27 ++- radiant.model-1.6.9/radiant.model/R/rforest.R | 5 radiant.model-1.6.9/radiant.model/inst/app/tools/help/crs.md | 2 radiant.model-1.6.9/radiant.model/inst/app/tools/help/dtree.Rmd | 8 radiant.model-1.6.9/radiant.model/inst/app/tools/help/dtree.md | 8 radiant.model-1.6.9/radiant.model/inst/app/tools/help/evalbin.md | 8 radiant.model-1.6.9/radiant.model/inst/app/tools/help/evalreg.md | 6 radiant.model-1.6.9/radiant.model/inst/app/tools/help/figures/place_holder.txt |only radiant.model-1.6.9/radiant.model/inst/app/tools/help/logistic.Rmd | 10 - radiant.model-1.6.9/radiant.model/inst/app/tools/help/logistic.md | 10 - radiant.model-1.6.9/radiant.model/inst/app/tools/help/mnl.Rmd | 8 radiant.model-1.6.9/radiant.model/inst/app/tools/help/mnl.md | 8 radiant.model-1.6.9/radiant.model/inst/app/tools/help/regress.Rmd | 44 ++-- radiant.model-1.6.9/radiant.model/inst/app/tools/help/regress.md | 44 ++-- radiant.model-1.6.9/radiant.model/inst/app/tools/help/simulater.Rmd | 10 - radiant.model-1.6.9/radiant.model/inst/app/tools/help/simulater.md | 10 - 70 files changed, 188 insertions(+), 194 deletions(-)
Title: Extract Demographic and Competition Data from Fine-Scale Maps
Description: Extracts growth, survival, and local neighborhood density
information from repeated, fine-scale maps of organism occurrence.
Further information about this package can be found in our journal
article, "plantTracker: An R package to translate maps of plant
occurrence into demographic data" published in 2022 in Methods in
Ecology and Evolution (Stears, et al., 2022)
<doi:10.1111/2041-210X.13950>.
Author: Alice Stears [aut, cre] ,
Jared Studyvin [aut],
David Atkins [aut]
Maintainer: Alice Stears <alice.e.stears@gmail.com>
This is a re-admission after prior archival of version 1.1.0 dated 2023-05-05
Diff between plantTracker versions 1.1.0 dated 2023-05-05 and 1.2.1 dated 2026-01-09
DESCRIPTION | 56 +- MD5 | 58 +- NAMESPACE | 2 R/getLambda.R | 4 R/getRecruits.R | 5 R/grasslandData.R | 4 R/grasslandInventory.R | 4 R/groupByGenet.R | 4 README.md | 37 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/Suggested_plantTracker_Workflow.R | 202 ++++----- inst/doc/Suggested_plantTracker_Workflow.Rmd | 38 - inst/doc/Suggested_plantTracker_Workflow.html | 346 ++++++++-------- inst/doc/Using_the_plantTracker_trackSpp_function.R | 98 ++-- inst/doc/Using_the_plantTracker_trackSpp_function.Rmd | 360 ++++++++--------- inst/doc/Using_the_plantTracker_trackSpp_function.html | 192 ++++----- man/figures/README-unnamed-chunk-11-1.png |binary man/figures/README-unnamed-chunk-13-1.png |binary man/figures/README-unnamed-chunk-14-1.png |binary man/figures/README-unnamed-chunk-17-1.png |binary man/figures/README-unnamed-chunk-19-1.png |binary man/figures/README-unnamed-chunk-20-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary man/getLambda.Rd | 4 man/getRecruits.Rd | 3 man/grasslandData.Rd | 4 man/grasslandInventory.Rd | 4 vignettes/Suggested_plantTracker_Workflow.Rmd | 38 - vignettes/Using_the_plantTracker_trackSpp_function.Rmd | 360 ++++++++--------- 30 files changed, 917 insertions(+), 906 deletions(-)
Title: Maddison Project Data
Description: Relatively easy access is provided to 2023 version of the Maddison
project data downloaded 2025-08-28. This project collates all the
credible data on population and GDP for 169 countries, with some dating
back to the year 1 of the current era. One function makes it easy to find
the leaders for each year, allowing users to delete countries like OPEC
with narrow economies to focus on technology leaders. Another function
makes it easy to plot data for only selected countries or years. Another
function makes it relatively easy to obtain references to the original
sources, which must be cited per the copyright rules of the Maddison
Project for different uses of their data.
Author: Spencer Graves [aut, cre]
Maintainer: Spencer Graves <spencer.graves@effectivedefense.org>
Diff between MaddisonData versions 1.0.2 dated 2025-11-24 and 1.1.0 dated 2026-01-09
DESCRIPTION | 26 +- MD5 | 53 +++--- NAMESPACE | 2 NEWS.md |only R/MaddisonData.R | 3 R/MaddisonLeaders.R | 125 ++++++++------ R/getMaddisonSources.R | 37 ++-- R/ggplotPath.R | 225 +++++++++++++++++++------ R/summary.MaddisonLeaders.R |only R/yr.R |only README.md | 61 ++++++- build/vignette.rds |binary inst/CITATION | 2 inst/WORDLIST | 30 +++ inst/doc/IndustrialRevolution.html | 226 +++++++++++++------------- inst/doc/TechLeaders.R |only inst/doc/TechLeaders.Rmd |only inst/doc/TechLeaders.html |only inst/doc/UpdateMaddisonData.html | 44 ++--- man/MaddisonData.Rd | 3 man/MaddisonLeaders.Rd | 41 +++- man/figures |only man/getMaddisonSources.Rd | 5 man/ggplotPath.Rd | 74 ++++++-- man/summary.MaddisonLeaders.Rd |only man/yr.Rd |only tests/testthat/test-MaddisonLeaders.R | 29 ++- tests/testthat/test-getMaddisonSources.R | 32 ++- tests/testthat/test-ggplotPath.R | 19 +- tests/testthat/test-summary.MaddisonLeaders.R |only tests/testthat/test-yr.R |only vignettes/NLD_SGP.svg |only vignettes/TechLeaders.Rmd |only 33 files changed, 698 insertions(+), 339 deletions(-)
Title: Calendrical Calculations
Description: An R implementation of the algorithms described in Reingold and
Dershowitz (4th ed., Cambridge University Press, 2018) <doi:10.1017/9781107415058>,
allowing conversion between many different calendar systems. Cultural and religious holidays
from several calendars can be calculated.
Author: Rob Hyndman [aut, cre, cph] ,
Edward Reingold [cph, ctb] ,
Nachum Dershowitz [cph, ctb]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between calcal versions 1.0.0 dated 2025-07-22 and 1.0.1 dated 2026-01-09
calcal-1.0.0/calcal/tests/testthat/test-casting.R |only calcal-1.0.1/calcal/DESCRIPTION | 8 - calcal-1.0.1/calcal/MD5 | 94 +++++++++---------- calcal-1.0.1/calcal/NAMESPACE | 9 + calcal-1.0.1/calcal/NEWS.md | 4 calcal-1.0.1/calcal/R/aa_calendar.R | 48 ++++++--- calcal-1.0.1/calcal/R/arithmetic.R | 4 calcal-1.0.1/calcal/R/astronomical.R | 4 calcal-1.0.1/calcal/R/babylonian.R | 15 ++- calcal-1.0.1/calcal/R/bahai.R | 2 calcal-1.0.1/calcal/R/bali.R | 2 calcal-1.0.1/calcal/R/chinese.R | 40 +++++--- calcal-1.0.1/calcal/R/granularities.R | 4 calcal-1.0.1/calcal/R/gregorian_parts.R | 4 calcal-1.0.1/calcal/R/hebrew.R | 3 calcal-1.0.1/calcal/R/icelandic.R | 23 +++- calcal-1.0.1/calcal/R/islamic.R | 7 - calcal-1.0.1/calcal/R/julian.R | 9 + calcal-1.0.1/calcal/R/kdays.R | 5 - calcal-1.0.1/calcal/R/lunar_calendars_astronomy.R | 74 ++++++++++---- calcal-1.0.1/calcal/R/modern_hindu.R | 84 ++++++++++------ calcal-1.0.1/calcal/R/persian.R | 17 ++- calcal-1.0.1/calcal/R/roman.R | 31 ++++-- calcal-1.0.1/calcal/R/tibetan.R | 16 ++- calcal-1.0.1/calcal/R/utilities.R | 37 +++++-- calcal-1.0.1/calcal/build/partial.rdb |binary calcal-1.0.1/calcal/build/vignette.rds |binary calcal-1.0.1/calcal/inst/doc/new_calendar.html | 6 - calcal-1.0.1/calcal/man/babylonian_date.Rd | 2 calcal-1.0.1/calcal/man/granularities.Rd | 2 calcal-1.0.1/calcal/tests/testthat/test-babylonian.R | 7 - calcal-1.0.1/calcal/tests/testthat/test-bahai.R | 10 -- calcal-1.0.1/calcal/tests/testthat/test-balinese.R | 27 ++--- calcal-1.0.1/calcal/tests/testthat/test-chinese.R | 48 --------- calcal-1.0.1/calcal/tests/testthat/test-common.R |only calcal-1.0.1/calcal/tests/testthat/test-coptic.R | 20 ---- calcal-1.0.1/calcal/tests/testthat/test-egyptian.R | 20 ---- calcal-1.0.1/calcal/tests/testthat/test-french.R | 20 ---- calcal-1.0.1/calcal/tests/testthat/test-gregorian.R | 9 - calcal-1.0.1/calcal/tests/testthat/test-hebrew.R | 25 ----- calcal-1.0.1/calcal/tests/testthat/test-hindu.R | 40 -------- calcal-1.0.1/calcal/tests/testthat/test-icelandic.R | 8 - calcal-1.0.1/calcal/tests/testthat/test-islamic.R | 23 ---- calcal-1.0.1/calcal/tests/testthat/test-iso.R | 9 - calcal-1.0.1/calcal/tests/testthat/test-julian.R | 11 -- calcal-1.0.1/calcal/tests/testthat/test-mayan.R | 8 - calcal-1.0.1/calcal/tests/testthat/test-persian.R | 10 -- calcal-1.0.1/calcal/tests/testthat/test-roman.R | 8 - calcal-1.0.1/calcal/tests/testthat/test-tibetan.R | 9 - 49 files changed, 372 insertions(+), 494 deletions(-)
Title: Precision Profile Weighted Deming Regression
Description: Weighted Deming regression, also known as 'errors-in-variable'
regression, is applied with suitable weights. Weights are modeled via a
precision profile; thus the methods implemented here are referred to as
precision profile weighted Deming (PWD) regression. The package covers
two settings – one where the precision profiles are known either from
external studies or from adequate replication of the X and Y readings,
and one in which there is a plausible functional form for the precision
profiles but the exact (unknown) function must be estimated from the
(generally singlicate) readings.
The function set includes tools for: estimated standard errors (via
jackknifing); standardized-residual analysis function with regression
diagnostic tools for normality, linearity and constant variance; and an
outlier analysis identifying significant outliers for closer investigation.
The following reference provides further information on mathematical
derivations and applications.
Hawkins, D.M., and J.J [...truncated...]
Author: Douglas M. Hawkins [aut, cph],
Jessica J. Kraker [aut, cre]
Maintainer: Jessica J. Kraker <krakerjj@uwec.edu>
Diff between ppwdeming versions 1.0.6 dated 2025-09-09 and 2.0.0 dated 2026-01-09
DESCRIPTION | 35 ++++----- MD5 | 38 ++++----- NAMESPACE | 6 + NEWS.md | 42 +++++++++++ R/PWD_RL.r | 178 ++++++++++++++++++++++------------------------ R/PWD_get_gh.r | 176 +++++++++++++++++++++++++++++++--------------- R/PWD_inference.r | 124 +++++++++++++++++++------------- R/PWD_known.r | 194 +++++++++++++++++++++++++++++---------------------- R/PWD_outlier.r | 131 +++++++++++++++++++++------------- R/PWD_resi.r | 86 +++++++++++----------- R/WD_General.r | 51 ++++++++----- R/WD_Linnet.r | 61 +++++++++------- man/PWD_RL.Rd | 29 ++++--- man/PWD_get_gh.Rd | 44 ++++++++--- man/PWD_inference.Rd | 35 ++++++--- man/PWD_known.Rd | 26 +++--- man/PWD_outlier.Rd | 35 ++++++--- man/PWD_resi.Rd | 40 ++++------ man/WD_General.Rd | 20 ++--- man/WD_Linnet.Rd | 23 +++--- 20 files changed, 833 insertions(+), 541 deletions(-)
Title: Testing for Shiny Applications
Description: Automated unit testing of Shiny applications through a
headless 'Chromium' browser.
Author: Barret Schloerke [cre, aut] ,
Posit Software, PBC [cph, fnd],
Winston Chang [ctb] ,
Gabor Csardi [ctb] ,
Hadley Wickham [ctb] ,
Mango Solutions [cph, ccp]
Maintainer: Barret Schloerke <barret@posit.co>
Diff between shinytest2 versions 0.4.1 dated 2025-04-11 and 0.5.0 dated 2026-01-09
shinytest2-0.4.1/shinytest2/R/httr.R |only shinytest2-0.4.1/shinytest2/tests/spelling.R |only shinytest2-0.4.1/shinytest2/tests/testthat/test-apps.R |only shinytest2-0.5.0/shinytest2/DESCRIPTION | 63 - shinytest2-0.5.0/shinytest2/MD5 | 216 +++- shinytest2-0.5.0/shinytest2/NAMESPACE | 3 shinytest2-0.5.0/shinytest2/NEWS.md | 65 + shinytest2-0.5.0/shinytest2/R/R6-helper.R | 46 shinytest2-0.5.0/shinytest2/R/app-driver-dir.R | 99 +- shinytest2-0.5.0/shinytest2/R/app-driver-expect-download.R | 11 shinytest2-0.5.0/shinytest2/R/app-driver-expect-screenshot.R | 4 shinytest2-0.5.0/shinytest2/R/app-driver-expect-values.R | 70 - shinytest2-0.5.0/shinytest2/R/app-driver-initialize.R | 4 shinytest2-0.5.0/shinytest2/R/app-driver-start.R | 266 ++++- shinytest2-0.5.0/shinytest2/R/app-driver.R | 6 shinytest2-0.5.0/shinytest2/R/expect-snapshot.R | 1 shinytest2-0.5.0/shinytest2/R/expr-recurse.R | 20 shinytest2-0.5.0/shinytest2/R/httr2.R |only shinytest2-0.5.0/shinytest2/R/pkg.R |only shinytest2-0.5.0/shinytest2/R/record-test-unique-name.R | 14 shinytest2-0.5.0/shinytest2/R/record-test.R | 119 ++ shinytest2-0.5.0/shinytest2/R/test-app.R | 376 +++++--- shinytest2-0.5.0/shinytest2/R/use.R | 189 +++- shinytest2-0.5.0/shinytest2/R/utils.R | 127 ++ shinytest2-0.5.0/shinytest2/build/vignette.rds |binary shinytest2-0.5.0/shinytest2/inst/WORDLIST | 1 shinytest2-0.5.0/shinytest2/inst/doc/in-depth.html | 4 shinytest2-0.5.0/shinytest2/inst/doc/robust.html | 2 shinytest2-0.5.0/shinytest2/inst/doc/shinytest2.html | 8 shinytest2-0.5.0/shinytest2/inst/doc/use-application-audit.R | 5 shinytest2-0.5.0/shinytest2/inst/doc/use-application-audit.Rmd | 9 shinytest2-0.5.0/shinytest2/inst/doc/use-application-audit.html | 6 shinytest2-0.5.0/shinytest2/inst/doc/use-package.R | 71 + shinytest2-0.5.0/shinytest2/inst/doc/use-package.Rmd | 211 +++- shinytest2-0.5.0/shinytest2/inst/doc/use-package.html | 336 +++++-- shinytest2-0.5.0/shinytest2/inst/doc/using-monkey-testing.html | 12 shinytest2-0.5.0/shinytest2/inst/doc/zzz-faq.Rmd | 2 shinytest2-0.5.0/shinytest2/inst/doc/zzz-faq.html | 9 shinytest2-0.5.0/shinytest2/inst/internal/recorder/app.R | 465 +++++++--- shinytest2-0.5.0/shinytest2/man/AppDriver.Rd | 6 shinytest2-0.5.0/shinytest2/man/app_support.Rd |only shinytest2-0.5.0/shinytest2/man/compare_screenshot_threshold.Rd | 2 shinytest2-0.5.0/shinytest2/man/load_app_env.Rd | 22 shinytest2-0.5.0/shinytest2/man/record_test.Rd | 18 shinytest2-0.5.0/shinytest2/man/test_app.Rd | 50 - 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Title: Creating, Manipulating and Annotating Matrix Ensemble
Description: Creates an object that stores a matrix ensemble, matrices
that share the same common properties, where rows and columns can be
annotated. Matrices must have the same dimension and dimnames. Operators to
manipulate these objects are provided as well as mechanisms to apply
functions to these objects.
Author: Pascal Croteau [aut, cre, cph]
Maintainer: Pascal Croteau <croteaupascl@gmail.com>
Diff between matrixset versions 0.4.0 dated 2025-01-07 and 0.4.1 dated 2026-01-09
DESCRIPTION | 8 - MD5 | 42 +++---- NEWS.md | 12 ++ R/construct.R | 10 + R/context.R | 5 R/filter.R | 10 - R/group.R | 11 -- R/join.R | 21 ++- build/vignette.rds |binary inst/doc/example.Rmd | 2 inst/doc/example.html | 16 ++ man/column_group_by_drop_default.Rd | 5 man/context.Rd | 4 man/filter_column.Rd | 5 man/filter_row.Rd | 5 man/join.Rd | 12 +- man/row_group_by_drop_default.Rd | 6 - tests/testthat/test-construct-Matrix.R | 178 ++++++++++++++++----------------- tests/testthat/test-extract-Matrix.R | 24 ++-- tests/testthat/test-fn-Matrix.R | 20 +-- tests/testthat/test-fn.R | 20 +-- vignettes/example.Rmd | 2 22 files changed, 226 insertions(+), 192 deletions(-)
Title: 'GraphQL' Server in R
Description: Server implementation of 'GraphQL'
<http://spec.graphql.org/>, a query language originally created by
Facebook for describing data requirements on complex application data
models. Visit <https://graphql.org> to learn more about 'GraphQL'.
Author: Barret Schloerke [aut, cre] ,
Ryan Hafen [ths] ,
GraphQL [cph]
Maintainer: Barret Schloerke <schloerke@gmail.com>
Diff between gqlr versions 0.0.2 dated 2019-12-02 and 0.1.0 dated 2026-01-09
gqlr-0.0.2/gqlr/tests/testthat/dog_cat_schema.R |only gqlr-0.0.2/gqlr/tests/testthat/introspection/introspection-dogcat.json |only gqlr-0.0.2/gqlr/tests/testthat/introspection/introspection-empty-output.json |only gqlr-0.0.2/gqlr/tests/testthat/kitchen/request-kitchen-sink-str-all.txt |only gqlr-0.0.2/gqlr/tests/testthat/kitchen/request-kitchen-sink-str.txt |only gqlr-0.0.2/gqlr/tests/testthat/kitchen/schema-kitchen-sink-str-all.txt |only gqlr-0.0.2/gqlr/tests/testthat/kitchen/schema-kitchen-sink-str.txt |only gqlr-0.0.2/gqlr/tests/testthat/star_wars_schema.R |only gqlr-0.0.2/gqlr/tests/testthat/validate_helper.R |only gqlr-0.1.0/gqlr/DESCRIPTION | 49 gqlr-0.1.0/gqlr/MD5 | 146 gqlr-0.1.0/gqlr/NAMESPACE | 6 gqlr-0.1.0/gqlr/NEWS.md | 40 gqlr-0.1.0/gqlr/R/AAA-utils.R | 7 gqlr-0.1.0/gqlr/R/R6--aaa-utils.R | 165 gqlr-0.1.0/gqlr/R/R6--definition.R | 1973 +++++----- gqlr-0.1.0/gqlr/R/R6-3.1.1-types-scalars.R | 226 - gqlr-0.1.0/gqlr/R/R6-3.2-directives.R | 78 gqlr-0.1.0/gqlr/R/R6-4-introspection.R | 766 ++- gqlr-0.1.0/gqlr/R/R6-6.1-executing-requests.R | 58 gqlr-0.1.0/gqlr/R/R6-6.2-executing-operations.R | 21 gqlr-0.1.0/gqlr/R/R6-6.3-executing-selection-sets.R | 127 gqlr-0.1.0/gqlr/R/R6-6.4-executing-fields.R | 121 gqlr-0.1.0/gqlr/R/R6-7-response.R | 2 gqlr-0.1.0/gqlr/R/R6-ErrorList.R | 403 +- gqlr-0.1.0/gqlr/R/R6-ObjectHelpers.R | 162 gqlr-0.1.0/gqlr/R/R6-Result.R | 40 gqlr-0.1.0/gqlr/R/R6-Schema.R | 635 +-- gqlr-0.1.0/gqlr/R/R6-VariableValdationHelper.R | 382 - gqlr-0.1.0/gqlr/R/R6z-from-json.R | 5 gqlr-0.1.0/gqlr/R/S3--aaa-setup.R | 31 gqlr-0.1.0/gqlr/R/S3-3.1.2.3-validation-object-type.R | 114 gqlr-0.1.0/gqlr/R/S3-str.R | 51 gqlr-0.1.0/gqlr/R/gqlr-package.R | 1 gqlr-0.1.0/gqlr/R/gqlr_schema.R | 119 gqlr-0.1.0/gqlr/R/graphql_json.R | 15 gqlr-0.1.0/gqlr/R/pryr.R |only gqlr-0.1.0/gqlr/R/server.R | 238 - gqlr-0.1.0/gqlr/R/upgrade_query_remove_fragments.R | 122 gqlr-0.1.0/gqlr/R/validation-arguments.R | 45 gqlr-0.1.0/gqlr/R/validation-input-coercion.R | 68 gqlr-0.1.0/gqlr/R/validation-query.R | 201 - gqlr-0.1.0/gqlr/R/validation-selection-set-can-merge.R | 108 gqlr-0.1.0/gqlr/R/zzz.R | 2 gqlr-0.1.0/gqlr/README.md | 17 gqlr-0.1.0/gqlr/inst |only gqlr-0.1.0/gqlr/man/ErrorList.Rd | 22 gqlr-0.1.0/gqlr/man/Schema.Rd | 36 gqlr-0.1.0/gqlr/man/execute_request.Rd | 16 gqlr-0.1.0/gqlr/man/gqlr_schema.Rd | 92 gqlr-0.1.0/gqlr/man/parse_ast.Rd | 4 gqlr-0.1.0/gqlr/man/server.Rd | 36 gqlr-0.1.0/gqlr/tests/testthat/_snaps |only gqlr-0.1.0/gqlr/tests/testthat/helper-validate.R |only gqlr-0.1.0/gqlr/tests/testthat/helper-z-dog_cat_schema.R |only gqlr-0.1.0/gqlr/tests/testthat/helper-z-star_wars_schema.R |only gqlr-0.1.0/gqlr/tests/testthat/introspection/execution-introspection.graphql | 2 gqlr-0.1.0/gqlr/tests/testthat/test-aaa-pryr-unenclose.R | 13 gqlr-0.1.0/gqlr/tests/testthat/test-aaa-util.R | 53 gqlr-0.1.0/gqlr/tests/testthat/test-gqlr_schema.R | 87 gqlr-0.1.0/gqlr/tests/testthat/test-input-coercion.R | 33 gqlr-0.1.0/gqlr/tests/testthat/test-input-object-coercion.R | 45 gqlr-0.1.0/gqlr/tests/testthat/test-kitchen.R | 44 gqlr-0.1.0/gqlr/tests/testthat/test-r6_from_args.R | 285 - gqlr-0.1.0/gqlr/tests/testthat/test-validation-5.1-operations.R | 35 gqlr-0.1.0/gqlr/tests/testthat/test-validation-5.2-fields.R | 73 gqlr-0.1.0/gqlr/tests/testthat/test-validation-5.3-argument.R | 40 gqlr-0.1.0/gqlr/tests/testthat/test-validation-5.4-fragment.R | 77 gqlr-0.1.0/gqlr/tests/testthat/test-validation-5.5-values.R | 15 gqlr-0.1.0/gqlr/tests/testthat/test-validation-5.6-directives.R | 22 gqlr-0.1.0/gqlr/tests/testthat/test-validation-5.7-variables.R | 100 gqlr-0.1.0/gqlr/tests/testthat/test-validation-object.R | 19 gqlr-0.1.0/gqlr/tests/testthat/test-z-execute-introspection.R | 106 gqlr-0.1.0/gqlr/tests/testthat/test-z-execute-mutation-simple.R | 58 gqlr-0.1.0/gqlr/tests/testthat/test-z-execute-simple.R | 66 gqlr-0.1.0/gqlr/tests/testthat/test-zz-star_wars.R | 46 76 files changed, 4032 insertions(+), 3937 deletions(-)
Title: Minimal R/Shiny Interface to JavaScript Library 'ECharts'
Description: Deliver the full functionality of 'ECharts' with minimal overhead. 'echarty' users build R lists for 'ECharts' API. Lean set of powerful commands.
Author: Larry Helgason [aut, cre]
Maintainer: Larry Helgason <larry@helgasoft.com>
Diff between echarty versions 1.7.0 dated 2025-10-22 and 1.7.1 dated 2026-01-09
DESCRIPTION | 8 +- MD5 | 36 +++++---- NEWS.md | 9 +- R/echarty.R | 60 +++++++++------- R/util.R | 37 +++++----- build/vignette.rds |binary demo/coder.R | 20 ++++- demo/examples.R | 152 ++++++++++++++++++++++++++++++++++-------- demo/js2r.R | 16 +++- inst/doc/introduction.R |only inst/doc/introduction.Rmd |only inst/doc/introduction.html |only inst/htmlwidgets/echarty.js | 6 - inst/htmlwidgets/echarty.yaml | 2 inst/js/renderers.js | 22 ++++-- man/ec.data.Rd | 4 - man/ec.init.Rd | 4 - man/ec.upd.Rd | 2 tests/testthat/test-other.R | 8 +- tests/testthat/test-presets.R | 14 +++ vignettes/introduction.Rmd |only 21 files changed, 289 insertions(+), 111 deletions(-)
Title: Estimation of Mean Costs in Censored Data
Description: Implementation of estimators for inferring
the mean of censored cost data. Including the estimators
BT from Bang and Tsiatis (2000) <doi:10.1093/biomet/87.2.329> and
ZT from Zhao and Tian (2001) <doi:10.1111/j.0006-341X.2001.01002.x>.
Author: Lars Boerty [aut, cre] ,
Rasmus Broendum [aut] ,
Martin Boegsted [aut] ,
Haematology Research Unit - Aalborg [cph]
Maintainer: Lars Boerty <lars.borty@gmail.com>
Diff between ccostr versions 0.1.0 dated 2019-09-09 and 0.1.1 dated 2026-01-09
DESCRIPTION | 16 - MD5 | 34 +-- R/ccmean.R | 1 R/hcost.R | 2 README.md | 100 ++++----- build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 8 inst/doc/ccostr.R | 10 inst/doc/ccostr.Rmd | 2 inst/doc/ccostr.html | 290 +++++++++++++++++--------- inst/doc/ccostrSimulation.R | 118 +++++----- inst/doc/ccostrSimulation.Rmd | 2 inst/doc/ccostrSimulation.html | 448 +++++++++++++++++++++++++---------------- man/hcost.Rd | 8 man/simCostData.Rd | 3 vignettes/ccostr.Rmd | 2 vignettes/ccostrSimulation.Rmd | 2 18 files changed, 621 insertions(+), 425 deletions(-)
Title: Probability Plot Correlation Coefficient Test
Description: Calculates the Probability Plot Correlation Coefficient (PPCC)
between a continuous variable X and a specified distribution. The corresponding
composite hypothesis test that was first introduced by
Filliben (1975) <doi: 10.1080/00401706.1975.10489279>
can be performed to test whether the sample
X is element of either the Normal, log-Normal, Exponential,
Uniform, Cauchy, Logistic, Generalized Logistic, Gumbel (GEVI), Weibull,
Generalized Extreme Value, Pearson III (Gamma 2), Mielke's Kappa, Rayleigh
or Generalized Logistic Distribution. The PPCC test is performed with
a fast Monte-Carlo simulation.
Author: Thorsten Pohlert [aut, cre]
Maintainer: Thorsten Pohlert <thorsten.pohlert@gmx.de>
Diff between ppcc versions 1.2 dated 2020-02-01 and 1.3 dated 2026-01-09
DESCRIPTION | 20 +++++++++++++------- MD5 | 38 +++++++++++++++++++------------------- R/ppPositions.R | 2 +- R/ppccTest.R | 2 +- inst/NEWS.Rd | 8 ++++++++ man/ppcc-package.Rd | 4 ++++ man/ppccTest.Rd | 4 ++-- src/ppcctest_cauchy.c | 2 +- src/ppcctest_exp.c | 2 +- src/ppcctest_gev.c | 2 +- src/ppcctest_glogis.c | 2 +- src/ppcctest_gumbel.c | 2 +- src/ppcctest_kappa2.c | 2 +- src/ppcctest_lnorm.c | 2 +- src/ppcctest_logis.c | 2 +- src/ppcctest_norm.c | 2 +- src/ppcctest_pearson3.c | 2 +- src/ppcctest_rayleigh.c | 2 +- src/ppcctest_unif.c | 2 +- src/ppcctest_weibull.c | 2 +- 20 files changed, 61 insertions(+), 43 deletions(-)
Title: Topological Data Analysis: Mapper Algorithm
Description: The Mapper algorithm from Topological Data Analysis, the steps are as follows 1. Define a filter (lens) function on the data. 2. Perform clustering within each level set. 3. Generate a complex from the clustering results.
Author: ChiChien Wang [aut, cre, trl],
Paul Pearson [ctb],
Daniel Muellner [ctb],
Gurjeet Singh [ctb]
Maintainer: ChiChien Wang <kennywang2003@gmail.com>
Diff between MapperAlgo versions 1.0.7 dated 2025-11-16 and 1.0.8 dated 2026-01-09
DESCRIPTION | 15 +-- MD5 | 32 ++++--- NAMESPACE | 7 - R/Cluster.R | 95 ++++++++++++--------- R/GridSearch.R | 12 +- R/MapperAlgo.R | 6 + R/MapperCorrelation.R | 23 +++-- R/Plotter.R | 194 +++++++++++++++++++------------------------ README.md | 64 ++++++++------ inst |only man/GridSearch.Rd | 3 man/MapperAlgo.Rd | 3 man/MapperCorrelation.Rd | 4 man/MapperPlotter.Rd | 17 --- man/figures/BetaFrontend.png |only man/perform_clustering.Rd | 7 + 16 files changed, 251 insertions(+), 231 deletions(-)
Title: A Data Interface Between 'GAMS' and R
Description: Read, analyze, modify, and write 'GAMS' (General Algebraic
Modeling System) data. The main focus of 'gamstransfer' is the
highly efficient transfer of data with 'GAMS' <https://www.gams.com/>,
while keeping these operations as simple as possible for the user. The
transfer of data usually takes place via an intermediate GDX (GAMS Data
Exchange) file. Additionally, 'gamstransfer' provides utility
functions to get an overview of 'GAMS' data and to check its validity.
Author: Atharv Bhosekar [aut, cre],
GAMS Development Corp. [cph, fnd],
GAMS Software GmbH [cph, fnd]
Maintainer: Atharv Bhosekar <abhosekar@gams.com>
Diff between gamstransfer versions 3.0.7 dated 2025-09-02 and 3.0.8 dated 2026-01-09
DESCRIPTION | 8 LICENSE | 4 MD5 | 184 NAMESPACE | 20 NEWS.md | 78 R/Alias.R | 758 +- R/BaseAlias.R | 286 R/Container.R | 3538 +++++----- R/DomainViolation.R | 144 R/Equation.R | 1108 +-- R/Parameter.R | 674 +- R/RcppExports.R | 38 R/Set.R | 414 - R/SpecialValues.R | 128 R/Super.R | 340 - R/Symbol.R | 4208 ++++++------ R/UniverseAlias.R | 456 - R/Variable.R | 1122 +-- R/gamstransfer-package.R | 12 R/symbolTypes.R | 120 R/utility.R | 62 README.md | 298 configure | 11 configure.ac | 11 man/Alias.Rd | 36 man/Container.Rd | 92 man/DomainViolation.Rd | 66 man/Equation.Rd | 40 man/Parameter.Rd | 40 man/Set.Rd | 38 man/SpecialValues.Rd | 56 man/UniverseAlias.Rd | 32 man/Variable.Rd | 38 man/dot-Symbol.Rd | 24 man/gamstransfer-package.Rd | 58 man/readGDX.Rd | 52 man/writeGDX.Rd | 82 src/Makevars.in | 2 src/Makevars.win | 6 src/Read.cpp | 4 src/Utilities.cpp | 4 src/Write.cpp | 4 src/gdx/LICENSE | 44 src/gdx/src/gdlib/gmsobj.cpp | 41 src/gdx/src/gdlib/gmsobj.hpp | 91 src/gdx/src/gdlib/strutilx.cpp | 341 + src/gdx/src/gdlib/strutilx.hpp | 10 src/gdx/src/gdlib/utils.cpp | 194 src/gdx/src/gdlib/utils.hpp | 9 src/gdx/src/gdx.hpp | 7 src/gdx/src/global/delphitypes.hpp | 2 src/gdx/src/rtl/p3io.cpp | 1 src/gdx/src/rtl/p3process.cpp | 175 src/gdx/src/rtl/p3process.hpp | 24 src/gdx/src/rtl/p3utils.cpp | 174 src/gdx/src/rtl/p3utils.hpp | 13 src/gdx/src/rtl/system_p3.cpp |only src/gdx/src/rtl/system_p3.hpp |only src/gdx/src/rtl/sysutils_p3.cpp | 743 +- src/gdx/src/rtl/sysutils_p3.hpp | 154 src/gdx/zlib |only src/utilities.hpp | 4 tests/testthat.R | 58 tests/testthat/data.gdx |binary tests/testthat/diffile.gdx |binary tests/testthat/empty.gdx |binary tests/testthat/foo.gdx |binary tests/testthat/foo.gms | 30 tests/testthat/foo.lst | 62 tests/testthat/foo_1.gdx |binary tests/testthat/gt.gdx |binary tests/testthat/out.gdx |binary tests/testthat/partial_equation.gdx |binary tests/testthat/partial_parameter.gdx |binary tests/testthat/partial_scalar.gdx |binary tests/testthat/partial_scalar_equation.gdx |binary tests/testthat/partial_scalar_variable.gdx |binary tests/testthat/partial_set.gdx |binary tests/testthat/partial_variable.gdx |binary tests/testthat/partial_write.gdx |binary tests/testthat/test-read.R | 9582 ++++++++++++++--------------- 81 files changed, 13825 insertions(+), 12630 deletions(-)
Title: Expectile and Quantile Regression
Description: Expectile and quantile regression of models with nonlinear effects
e.g. spatial, random, ridge using least asymmetric weighed squares / absolutes
as well as boosting; also supplies expectiles for common distributions.
Author: Fabian Otto-Sobotka [cre],
Elmar Spiegel [aut],
Sabine Schnabel [aut],
Linda Schulze Waltrup [aut],
Paul Eilers [ctb],
Thomas Kneib [ths],
Goeran Kauermann [ctb]
Maintainer: Fabian Otto-Sobotka <fabian.otto-sobotka@uni-oldenburg.de>
This is a re-admission after prior archival of version 0.53 dated 2024-02-02
Diff between expectreg versions 0.53 dated 2024-02-02 and 0.54 dated 2026-01-09
ChangeLog | 4 ++++ DESCRIPTION | 9 ++++----- MD5 | 18 +++++++++--------- inst/doc/expectreg.pdf |binary man/Mqreg.Rd | 6 ++---- man/expectreg-package.Rd | 4 ++-- man/expectreg.boost.Rd | 6 +++--- man/expectreg.ls.Rd | 10 ++++------ man/india.bnd.Rd | 2 +- man/northger.bnd.Rd | 2 +- 10 files changed, 30 insertions(+), 31 deletions(-)
Title: An API Client for the Environmental Data Initiative Repository
Description: A client for the Environmental Data Initiative repository REST API. The 'EDI' data repository <https://portal.edirepository.org/nis/home.jsp> is for publication and reuse of ecological data with emphasis on metadata accuracy and completeness. It is built upon the 'PASTA+' software stack <https://pastaplus-core.readthedocs.io/en/latest/index.html#> and was developed in collaboration with the US 'LTER' Network <https://lternet.edu/>. 'EDIutils' includes functions to search and access existing data, evaluate and upload new data, and assist other data management tasks common to repository users.
Author: Colin Smith [aut, cre] ,
Corinna Gries [ctb] ,
Jasmine Lai [rev] ,
Rodrigo Pires [rev]
Maintainer: Colin Smith <colin.smith@wisc.edu>
Diff between EDIutils versions 1.0.3 dated 2023-10-10 and 2.0.0 dated 2026-01-09
EDIutils-1.0.3/EDIutils/tests/testthat/test_create_dn.R |only EDIutils-2.0.0/EDIutils/DESCRIPTION | 26 EDIutils-2.0.0/EDIutils/MD5 | 171 - EDIutils-2.0.0/EDIutils/NAMESPACE | 2 EDIutils-2.0.0/EDIutils/NEWS.md | 16 EDIutils-2.0.0/EDIutils/R/create_dn.R | 10 EDIutils-2.0.0/EDIutils/R/get_audit_csv_report.R |only EDIutils-2.0.0/EDIutils/R/get_audit_report.R | 5 EDIutils-2.0.0/EDIutils/R/list_principal_owner_citations.R | 9 EDIutils-2.0.0/EDIutils/R/list_user_data_packages.R | 16 EDIutils-2.0.0/EDIutils/R/login.R | 24 EDIutils-2.0.0/EDIutils/R/logout.R | 5 EDIutils-2.0.0/EDIutils/R/utilities.R | 18 EDIutils-2.0.0/EDIutils/build/vignette.rds |binary EDIutils-2.0.0/EDIutils/inst/doc/evaluate_and_upload.R | 232 - EDIutils-2.0.0/EDIutils/inst/doc/evaluate_and_upload.Rmd | 2 EDIutils-2.0.0/EDIutils/inst/doc/evaluate_and_upload.html | 9 EDIutils-2.0.0/EDIutils/inst/doc/retrieve_citations.R | 44 EDIutils-2.0.0/EDIutils/inst/doc/retrieve_citations.html | 1 EDIutils-2.0.0/EDIutils/inst/doc/retrieve_downloads.R | 152 - EDIutils-2.0.0/EDIutils/inst/doc/retrieve_downloads.html | 5 EDIutils-2.0.0/EDIutils/inst/doc/search_and_access.R | 236 - EDIutils-2.0.0/EDIutils/inst/doc/search_and_access.html | 1 EDIutils-2.0.0/EDIutils/inst/doc/tests_requiring_authentication.R | 75 EDIutils-2.0.0/EDIutils/inst/doc/tests_requiring_authentication.Rmd | 7 EDIutils-2.0.0/EDIutils/inst/doc/tests_requiring_authentication.html | 31 EDIutils-2.0.0/EDIutils/man/create_dn.Rd | 8 EDIutils-2.0.0/EDIutils/man/create_event_subscription.Rd | 2 EDIutils-2.0.0/EDIutils/man/delete_event_subscription.Rd | 2 EDIutils-2.0.0/EDIutils/man/execute_event_subscription.Rd | 2 EDIutils-2.0.0/EDIutils/man/get_audit_count.Rd | 1 EDIutils-2.0.0/EDIutils/man/get_audit_csv_report.Rd |only EDIutils-2.0.0/EDIutils/man/get_audit_record.Rd | 1 EDIutils-2.0.0/EDIutils/man/get_audit_report.Rd | 5 EDIutils-2.0.0/EDIutils/man/get_docid_reads.Rd | 1 EDIutils-2.0.0/EDIutils/man/get_packageid_reads.Rd | 1 EDIutils-2.0.0/EDIutils/man/get_recent_uploads.Rd | 1 EDIutils-2.0.0/EDIutils/man/list_principal_owner_citations.Rd | 9 EDIutils-2.0.0/EDIutils/man/list_user_data_packages.Rd | 14 EDIutils-2.0.0/EDIutils/man/login.Rd | 4 EDIutils-2.0.0/EDIutils/man/logout.Rd | 4 EDIutils-2.0.0/EDIutils/man/query_event_subscriptions.Rd | 4 EDIutils-2.0.0/EDIutils/man/read_data_entity.Rd | 14 EDIutils-2.0.0/EDIutils/man/read_data_entity_checksum.Rd | 16 EDIutils-2.0.0/EDIutils/man/read_data_entity_name.Rd | 14 EDIutils-2.0.0/EDIutils/man/read_data_entity_names.Rd | 14 EDIutils-2.0.0/EDIutils/man/read_data_entity_resource_metadata.Rd | 16 EDIutils-2.0.0/EDIutils/man/read_data_entity_size.Rd | 14 EDIutils-2.0.0/EDIutils/man/read_data_entity_sizes.Rd | 14 EDIutils-2.0.0/EDIutils/man/read_data_package.Rd | 14 EDIutils-2.0.0/EDIutils/man/read_data_package_archive.Rd | 16 EDIutils-2.0.0/EDIutils/man/read_data_package_citation.Rd | 16 EDIutils-2.0.0/EDIutils/man/read_data_package_doi.Rd | 16 EDIutils-2.0.0/EDIutils/man/read_data_package_error.Rd | 16 EDIutils-2.0.0/EDIutils/man/read_data_package_from_doi.Rd | 16 EDIutils-2.0.0/EDIutils/man/read_data_package_report.Rd | 14 EDIutils-2.0.0/EDIutils/man/read_data_package_report_checksum.Rd | 16 EDIutils-2.0.0/EDIutils/man/read_data_package_report_resource_metadata.Rd | 16 EDIutils-2.0.0/EDIutils/man/read_data_package_report_summary.Rd | 16 EDIutils-2.0.0/EDIutils/man/read_data_package_resource_metadata.Rd | 16 EDIutils-2.0.0/EDIutils/man/read_evaluate_report.Rd | 14 EDIutils-2.0.0/EDIutils/man/read_evaluate_report_summary.Rd | 14 EDIutils-2.0.0/EDIutils/man/read_metadata.Rd | 12 EDIutils-2.0.0/EDIutils/man/read_metadata_checksum.Rd | 16 EDIutils-2.0.0/EDIutils/man/read_metadata_dublin_core.Rd | 16 EDIutils-2.0.0/EDIutils/man/read_metadata_entity.Rd | 16 EDIutils-2.0.0/EDIutils/man/read_metadata_format.Rd | 16 EDIutils-2.0.0/EDIutils/man/read_metadata_resource_metadata.Rd | 16 EDIutils-2.0.0/EDIutils/tests/fixtures/get_audit_csv_report.yml |only EDIutils-2.0.0/EDIutils/tests/fixtures/get_audit_report.yml | 67 EDIutils-2.0.0/EDIutils/tests/fixtures/list_principal_owner_citations.yml | 1506 +++++++++- EDIutils-2.0.0/EDIutils/tests/fixtures/list_user_data_packages.yml | 389 ++ EDIutils-2.0.0/EDIutils/tests/fixtures/query_event_subscriptions.yml | 43 EDIutils-2.0.0/EDIutils/tests/testthat/_vcr |only EDIutils-2.0.0/EDIutils/tests/testthat/setup-EDIutils.R | 2 EDIutils-2.0.0/EDIutils/tests/testthat/test_create_data_package.R | 3 EDIutils-2.0.0/EDIutils/tests/testthat/test_evaluate_data_package.R | 3 EDIutils-2.0.0/EDIutils/tests/testthat/test_get_audit_csv_report.R |only EDIutils-2.0.0/EDIutils/tests/testthat/test_get_audit_report.R | 2 EDIutils-2.0.0/EDIutils/tests/testthat/test_get_journal_citation.R | 4 EDIutils-2.0.0/EDIutils/tests/testthat/test_list_data_package_citations.R | 4 EDIutils-2.0.0/EDIutils/tests/testthat/test_list_principal_owner_citations.R | 8 EDIutils-2.0.0/EDIutils/tests/testthat/test_list_user_data_packages.R | 2 EDIutils-2.0.0/EDIutils/tests/testthat/test_query_event_subscriptions.R | 2 EDIutils-2.0.0/EDIutils/tests/testthat/test_update_data_package.R | 6 EDIutils-2.0.0/EDIutils/tests/testthat/test_utilities.R | 13 EDIutils-2.0.0/EDIutils/vignettes/evaluate_and_upload.Rmd | 2 EDIutils-2.0.0/EDIutils/vignettes/tests_requiring_authentication.Rmd | 7 88 files changed, 2749 insertions(+), 864 deletions(-)
Title: Cluster-Based Multiple Comparisons
Description: Multiple comparison techniques are typically applied following an F
test from an ANOVA to decide which means are significantly different from
one another. As an alternative to traditional methods, cluster analysis
can be performed to group the means of different treatments into
non-overlapping clusters. Treatments in different groups are considered
statistically different. Several approaches have been proposed, with varying
clustering methods and cut-off criteria. This package implements
cluster-based multiple comparisons tests and also provides a visual
representation in the form of a dendrogram. Di Rienzo, J. A., Guzman, A. W.,
& Casanoves, F. (2002) <jstor.org/stable/1400690>. Bautista, M. G., Smith, D.
W., & Steiner, R. L. (1997) <doi:10.2307/1400402>.
Author: Santiago Garcia Sanchez [aut, cre, cph]
Maintainer: Santiago Garcia Sanchez <santiagoesquel@gmail.com>
Diff between ClustMC versions 0.1.1 dated 2024-08-27 and 0.1.2 dated 2026-01-09
DESCRIPTION | 13 +++++------ MD5 | 31 ++++++++++++++-------------- NAMESPACE | 1 NEWS.md | 6 +++++ R/ClustMC-package.R | 1 R/bss.R | 26 +++++++++++------------ R/dgc.R | 8 +++---- R/jolliffe.R | 8 +++---- README.md | 5 +++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/CustomPlots.html | 42 +++++++++++++++++++------------------- man/ClustMC-package.Rd | 2 + man/figures/README-example1-1.png |binary man/figures/README-example2-1.png |binary man/figures/logo.png |only tests/testthat.R | 8 ------- 17 files changed, 77 insertions(+), 74 deletions(-)
Title: Non-Parametric Bayesian Analyses of Animal Movement
Description: Methods for assessing animal movement from telemetry and biologging
data using non-parametric Bayesian methods. This includes features for pre-
processing and analysis of data, as well as the visualization of results
from the models. This framework does not rely on standard parametric density
functions, which provides flexibility during model fitting. Further details
regarding part of this framework can be found in Cullen et al. (2022) <doi:10.1111/2041-210X.13745>.
Author: Joshua Cullen [aut, cre, cph] ,
Denis Valle [aut, cph]
Maintainer: Joshua Cullen <joshcullen10@gmail.com>
Diff between bayesmove versions 0.2.3 dated 2025-10-24 and 0.2.4 dated 2026-01-09
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 3 +++ R/zzz.R | 3 +++ 4 files changed, 13 insertions(+), 7 deletions(-)
More information about TxEffectsSurvival at CRAN
Permanent link
Title: Meta-Population Compartmental Model for Respiratory Virus
Diseases
Description: Simulates respiratory virus epidemics using meta-population compartmental models following Fadikar et. al. (2025) <doi:10.1101/2025.05.05.25327021>. 'MetaRVM' implements a stochastic
SEIRD (Susceptible-Exposed-Infected-Recovered-Dead) framework with demographic
stratification by age, race, and geographic zones. It supports complex
epidemiological scenarios including asymptomatic and presymptomatic transmission,
hospitalization dynamics, vaccination schedules, and time-varying contact patterns
via mixing matrices.
Author: Arindam Fadikar [aut, cre, cph] ,
Charles Macal [ctb],
Martinez Moyano Ignacio Javier [ctb],
Ozik Jonathan [ctb]
Maintainer: Arindam Fadikar <afadikar@anl.gov>
Diff between MetaRVM versions 1.0.0 dated 2025-12-19 and 1.0.1 dated 2026-01-09
MetaRVM-1.0.0/MetaRVM/inst/doc/checkpointing.R |only MetaRVM-1.0.1/MetaRVM/DESCRIPTION | 6 - MetaRVM-1.0.1/MetaRVM/MD5 | 21 ++--- MetaRVM-1.0.1/MetaRVM/NEWS.md | 2 MetaRVM-1.0.1/MetaRVM/R/metaODIN.R | 6 - MetaRVM-1.0.1/MetaRVM/build/vignette.rds |binary MetaRVM-1.0.1/MetaRVM/inst/doc/checkpointing.Rmd | 52 +++++++++---- MetaRVM-1.0.1/MetaRVM/inst/doc/checkpointing.html | 50 ++++++------ MetaRVM-1.0.1/MetaRVM/inst/doc/getting-started.html | 11 ++ MetaRVM-1.0.1/MetaRVM/inst/doc/running-a-simulation.html | 59 ++++++++------- MetaRVM-1.0.1/MetaRVM/vignettes/checkpointing.Rmd | 52 +++++++++---- MetaRVM-1.0.1/MetaRVM/vignettes/checkpointing.Rmd.orig |only MetaRVM-1.0.1/MetaRVM/vignettes/plot-1.png |only 13 files changed, 165 insertions(+), 94 deletions(-)
Title: Pedigree Inference from SNPs
Description: Multi-generational pedigree inference from incomplete data on
hundreds of SNPs, including parentage assignment and sibship clustering.
See Huisman (2017) (<DOI:10.1111/1755-0998.12665>) for more information.
Author: Jisca Huisman [aut, cre]
Maintainer: Jisca Huisman <jisca.huisman@gmail.com>
Diff between sequoia versions 3.1.3 dated 2025-11-18 and 3.2.0 dated 2026-01-09
sequoia-3.1.3/sequoia/man/CalcCorners.Rd |only sequoia-3.1.3/sequoia/man/CheckAP.Rd |only sequoia-3.1.3/sequoia/man/CheckLH.Rd |only sequoia-3.1.3/sequoia/man/CheckParams.Rd |only sequoia-3.1.3/sequoia/man/DoErrors.Rd |only sequoia-3.1.3/sequoia/man/DuplicateCheck.Rd |only sequoia-3.1.3/sequoia/man/EstEr.Rd |only sequoia-3.1.3/sequoia/man/FoldSibGPs.Rd |only sequoia-3.1.3/sequoia/man/FortifyPairs.Rd |only sequoia-3.1.3/sequoia/man/GetRelA.Rd |only sequoia-3.1.3/sequoia/man/LLRplot.Rd |only sequoia-3.1.3/sequoia/man/MergeFill.Rd |only sequoia-3.1.3/sequoia/man/MkAPdefault.Rd |only sequoia-3.1.3/sequoia/man/MkFortParams.Rd |only sequoia-3.1.3/sequoia/man/NumToID.Rd |only sequoia-3.1.3/sequoia/man/OHperSNP.Rd |only sequoia-3.1.3/sequoia/man/ParamToSpecs.Rd |only sequoia-3.1.3/sequoia/man/PedToNum.Rd |only sequoia-3.1.3/sequoia/man/PlotSnpStats.Rd |only sequoia-3.1.3/sequoia/man/ReOrderDums.Rd |only sequoia-3.1.3/sequoia/man/SelectNotSampled.Rd |only sequoia-3.1.3/sequoia/man/SeqParSib.Rd |only sequoia-3.1.3/sequoia/man/SibMatch.Rd |only sequoia-3.1.3/sequoia/man/SmoothAP.Rd |only sequoia-3.1.3/sequoia/man/SpecsToParam.Rd |only sequoia-3.1.3/sequoia/man/Vcomp.Rd |only sequoia-3.1.3/sequoia/man/VennSquares.Rd |only sequoia-3.1.3/sequoia/man/mtSame2Dif.Rd |only sequoia-3.1.3/sequoia/man/orderLH.Rd |only sequoia-3.1.3/sequoia/man/rc.Rd |only sequoia-3.1.3/sequoia/man/tryCatch.W.E.Rd |only sequoia-3.2.0/sequoia/DESCRIPTION | 8 sequoia-3.2.0/sequoia/MD5 | 107 +-- sequoia-3.2.0/sequoia/NEWS.md | 8 sequoia-3.2.0/sequoia/R/CalcOHLLR.R | 1 sequoia-3.2.0/sequoia/R/CalcPairLL.R | 14 sequoia-3.2.0/sequoia/R/CalcParentProbs.R | 10 sequoia-3.2.0/sequoia/R/CheckGeno.R | 2 sequoia-3.2.0/sequoia/R/CheckLifeHist.R | 4 sequoia-3.2.0/sequoia/R/ComparePairs.R | 3 sequoia-3.2.0/sequoia/R/ComparePeds.R | 6 sequoia-3.2.0/sequoia/R/ConfProb.R | 9 sequoia-3.2.0/sequoia/R/CountPairOH.R | 1 sequoia-3.2.0/sequoia/R/DuplicateCheck.R | 3 sequoia-3.2.0/sequoia/R/EstEr.R | 3 sequoia-3.2.0/sequoia/R/GenoConvert.R | 16 sequoia-3.2.0/sequoia/R/GetMaybeRel.R | 1 sequoia-3.2.0/sequoia/R/MkAgePrior.R | 7 sequoia-3.2.0/sequoia/R/PedToNum.R | 9 sequoia-3.2.0/sequoia/R/PlotPairLL.R | 3 sequoia-3.2.0/sequoia/R/PlotPedComp.R | 6 sequoia-3.2.0/sequoia/R/Prepare.R | 13 sequoia-3.2.0/sequoia/R/SNPstats.R | 7 sequoia-3.2.0/sequoia/R/Sequoia_F90wrappers.R | 56 + sequoia-3.2.0/sequoia/R/Sequoia_Main.R | 5 sequoia-3.2.0/sequoia/R/SimGeno.R | 7 sequoia-3.2.0/sequoia/R/Utils.R | 6 sequoia-3.2.0/sequoia/R/WriteToFiles.R | 6 sequoia-3.2.0/sequoia/R/getRelM.R | 3 sequoia-3.2.0/sequoia/inst/doc/PedComp.html | 2 sequoia-3.2.0/sequoia/inst/doc/quick_start_example1.html | 14 sequoia-3.2.0/sequoia/inst/doc/vignette-age.pdf |binary sequoia-3.2.0/sequoia/inst/doc/vignette-main.pdf |binary sequoia-3.2.0/sequoia/inst/doc/vignette_mtDNA.pdf |binary sequoia-3.2.0/sequoia/man/CalcPairLL.Rd | 10 sequoia-3.2.0/sequoia/man/CalcParentProbs.Rd | 7 sequoia-3.2.0/sequoia/man/GenoConvert.Rd | 2 sequoia-3.2.0/sequoia/src/Sequoia.f90 | 453 ++++++++++----- sequoia-3.2.0/sequoia/src/countpairOH.f90 | 64 +- sequoia-3.2.0/sequoia/src/init.c | 58 - 70 files changed, 603 insertions(+), 331 deletions(-)
Title: Spatial Structural Change Detection by an Analysis of
Variability Between Blocks of Observations
Description: Provides methods to detect structural changes in time series or random fields (spatial data). Focus is on the detection of abrupt changes or trends in independent data, but the package also provides a function to de-correlate data with dependence. The functions are based on the test suggested in Schmidt (2024) <DOI:10.3150/23-BEJ1686> and the work in Görz and Fried (2025) <DOI:10.48550/arXiv.2512.11599>.
Author: Sheila Goerz [aut, cre],
Roland Fried [ctb, ths]
Maintainer: Sheila Goerz <sheila.goerz@tu-dortmund.de>
Diff between SChangeBlock versions 0.0.1 dated 2026-01-06 and 0.1.0 dated 2026-01-09
DESCRIPTION | 6 +++--- MD5 | 6 +++--- src/Mu.cpp | 15 +++++++++------ tests/testthat/test-Mu.R | 8 ++++---- 4 files changed, 19 insertions(+), 16 deletions(-)
Title: High-Level Plotting Built Upon 'ggplot2' and Other Plotting
Packages
Description: Provides high-level API and a wide range of options to create stunning, publication-quality plots effortlessly.
It is built upon 'ggplot2' and other plotting packages, and is designed to be easy to use and to work seamlessly with 'ggplot2' objects.
It is particularly useful for creating complex plots with multiple layers, facets, and annotations.
It also provides a set of functions to create plots for specific types of data, such as Venn diagrams, alluvial diagrams, and phylogenetic trees.
The package is designed to be flexible and customizable, and to work well with the 'ggplot2' ecosystem.
The API can be found at <https://pwwang.github.io/plotthis/reference/index.html>.
Author: Panwen Wang [aut, cre]
Maintainer: Panwen Wang <pwwang@pwwang.com>
Diff between plotthis versions 0.9.0 dated 2025-12-11 and 0.9.3 dated 2026-01-09
DESCRIPTION | 13 +- MD5 | 26 ++--- NAMESPACE | 1 R/boxviolinplot.R | 210 ++++++++++++++++++++++++++++++++++++------ R/densityplot.R | 1 R/dimplot.R | 6 - R/theming.R | 1 README.md | 2 man/BoxViolinPlot-internal.Rd | 25 ++++- man/BoxViolinPlotAtomic.Rd | 27 ++++- man/DimPlotAtomic.Rd | 2 man/boxviolinplot.Rd | 150 +++++++++++++++++++++++++++++- man/dimplot.Rd | 2 man/show_palettes.Rd | 2 14 files changed, 408 insertions(+), 60 deletions(-)
Title: Generalized Kumaraswamy Regression Models for Bounded Data
Description: Implements regression models for bounded continuous data in the open interval (0,1)
using the five-parameter Generalized 'Kumaraswamy' distribution. Supports modeling
all distribution parameters (alpha, beta, gamma, delta, lambda) as functions of
predictors through various link functions. Provides efficient maximum likelihood
estimation via Template Model Builder ('TMB'), offering comprehensive diagnostics,
model comparison tools, and simulation methods. Particularly useful for analyzing
proportions, rates, indices, and other bounded response data with complex
distributional features not adequately captured by simpler models.
Author: Jose Evandeilton Lopes [aut, cre]
Maintainer: Jose Evandeilton Lopes <evandeilton@gmail.com>
This is a re-admission after prior archival of version 2.1.6 dated 2025-11-27
Diff between gkwreg versions 2.1.6 dated 2025-11-27 and 2.1.14 dated 2026-01-09
gkwreg-2.1.14/gkwreg/DESCRIPTION | 21 gkwreg-2.1.14/gkwreg/MD5 | 67 gkwreg-2.1.14/gkwreg/NAMESPACE | 6 gkwreg-2.1.14/gkwreg/NEWS.md | 38 gkwreg-2.1.14/gkwreg/R/gkwreg-compile-tmb.R | 780 +++++-- gkwreg-2.1.14/gkwreg/R/gkwreg-utils.R | 8 gkwreg-2.1.14/gkwreg/R/zzz.R | 1 gkwreg-2.1.14/gkwreg/README.md | 17 gkwreg-2.1.14/gkwreg/build/partial.rdb |binary gkwreg-2.1.14/gkwreg/build/vignette.rds |binary gkwreg-2.1.14/gkwreg/inst/WORDLIST |only gkwreg-2.1.14/gkwreg/inst/doc/gkwreg-vs-betareg.html | 82 gkwreg-2.1.14/gkwreg/inst/paper/paper.log | 8 gkwreg-2.1.14/gkwreg/inst/paper/paper.md | 4 gkwreg-2.1.14/gkwreg/inst/paper/paper.pdf |binary gkwreg-2.1.14/gkwreg/inst/tmb/bkwreg.cpp | 19 gkwreg-2.1.14/gkwreg/inst/tmb/ekwreg.cpp | 17 gkwreg-2.1.14/gkwreg/inst/tmb/gkwreg.cpp | 1022 ++++++---- gkwreg-2.1.14/gkwreg/inst/tmb/kkwreg.cpp | 19 gkwreg-2.1.14/gkwreg/inst/tmb/kwreg.cpp | 15 gkwreg-2.1.14/gkwreg/inst/tmb/mcreg.cpp | 17 gkwreg-2.1.14/gkwreg/man/fitted.gkwreg.Rd | 2 gkwreg-2.1.14/gkwreg/tests/testthat/test-gkwreg-anova-tests.R | 3 gkwreg-2.1.14/gkwreg/tests/testthat/test-gkwreg-beta-vs-betareg.R | 3 gkwreg-2.1.14/gkwreg/tests/testthat/test-gkwreg-control-tests.R | 3 gkwreg-2.1.14/gkwreg/tests/testthat/test-gkwreg-core-tests.R | 3 gkwreg-2.1.14/gkwreg/tests/testthat/test-gkwreg-methods-tests.R | 3 gkwreg-2.1.14/gkwreg/tests/testthat/test-gkwreg-other-methods-tests.R | 5 gkwreg-2.1.14/gkwreg/tests/testthat/test-gkwreg-plot-tests.R | 3 gkwreg-2.1.14/gkwreg/tests/testthat/test-gkwreg-predict-tests.R | 3 gkwreg-2.1.14/gkwreg/tests/testthat/test-gkwreg-residuals-tests.R | 3 gkwreg-2.1.6/gkwreg/man/clean_tmb_cache.Rd |only gkwreg-2.1.6/gkwreg/man/dot-check_and_compile_TMB_code.Rd |only gkwreg-2.1.6/gkwreg/man/dot-compile_model.Rd |only gkwreg-2.1.6/gkwreg/man/dot-get_cache_dir.Rd |only gkwreg-2.1.6/gkwreg/man/dot-is_dll_functional.Rd |only gkwreg-2.1.6/gkwreg/man/dot-load_dll.Rd |only gkwreg-2.1.6/gkwreg/man/list_tmb_models.Rd |only gkwreg-2.1.6/gkwreg/man/precompile_tmb_models.Rd |only 39 files changed, 1462 insertions(+), 710 deletions(-)
Title: Create Layout Plots of Biological Culture Plates and Microplates
Description: Enables users to create simple plots of biological culture plates as well as microplates. Both continuous and discrete values can be plotted onto the plate layout.
Author: Jan-Philipp Quast [aut, cre]
Maintainer: Jan-Philipp Quast <jpquast.software@gmail.com>
Diff between ggplate versions 0.1.5 dated 2024-10-01 and 0.2.0 dated 2026-01-09
DESCRIPTION | 15 +- MD5 | 41 ++--- NEWS.md | 7 R/plate_plot.R | 74 +++++----- README.md | 53 +++++-- man/figures/README-24_well_plate_legend_n_row-1.png |binary man/figures/README-6_well_plot_new_colours-1.png |binary man/figures/README-6_well_plot_new_colours_no_legend-1.png |binary man/figures/README-discrete_96_well_plate-1.png |binary man/figures/README-discrete_96_well_plate_label-1.png |binary man/figures/README-resize_plot-1.png |binary man/figures/README-return_device_size-1.png |binary man/figures/README-standard_plot-1.png |binary man/figures/README-standard_plot_384_well_new_gradient-1.png |binary man/figures/README-standard_plot_384_well_new_limits-1.png |binary man/figures/README-standard_plot_384_well_new_limits_outlier-1.png |binary man/figures/README-standard_plot_48_empty_wells-1.png |binary man/figures/README-standard_plot_48_empty_wells_keep_na-1.png |only man/figures/README-standard_plot_6_well-1.png |binary man/figures/README-standard_plot_labels-1.png |binary man/figures/README-standard_plot_labels_wells-1.png |binary man/plate_plot.Rd | 8 + 22 files changed, 124 insertions(+), 74 deletions(-)
Title: Statistical Inference and Prediction of Annotations in
Phylogenetic Trees
Description: Implements a parsimonious evolutionary model to analyze and
predict gene-functional annotations in phylogenetic trees as described in Vega
Yon et al. (2021) <doi:10.1371/journal.pcbi.1007948>. Focusing on
computational efficiency, 'aphylo' makes it possible to estimate pooled
phylogenetic models, including thousands (hundreds) of annotations (trees) in
the same run. The package also provides the tools for visualization of
annotated phylogenies, calculation of posterior probabilities (prediction)
and goodness-of-fit assessment featured in Vega Yon et al. (2021).
Author: George Vega Yon [aut, cre] ,
National Cancer Institute [fnd] ,
USC Biostatistics [cph]
Maintainer: George Vega Yon <g.vegayon@gmail.com>
Diff between aphylo versions 0.3-5 dated 2025-11-20 and 0.3-6 dated 2026-01-09
aphylo-0.3-5/aphylo/inst/NEWS |only aphylo-0.3-6/aphylo/DESCRIPTION | 6 +++--- aphylo-0.3-6/aphylo/MD5 | 9 ++++----- aphylo-0.3-6/aphylo/R/simulation.R | 5 ----- aphylo-0.3-6/aphylo/inst/doc/example.html | 26 +++++++++++++------------- aphylo-0.3-6/aphylo/man/sim_fun_on_tree.Rd | 3 --- 6 files changed, 20 insertions(+), 29 deletions(-)
Title: Tabulate Descriptive Statistics in Multiple Formats
Description: Creates a table of descriptive statistics
for factor and numeric columns in a data frame. Displays
these by groups, if any. Highly customizable, with support
for 'html' and 'pdf' provided by 'kableExtra'. Respects
original column order, column labels, and factor level order.
See ?tablet.data.frame and vignettes.
Author: Tim Bergsma [aut, cre]
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between tablet versions 0.6.12 dated 2024-11-14 and 0.7.1 dated 2026-01-09
DESCRIPTION | 8 MD5 | 60 ++--- R/tablet.R | 31 ++ build/vignette.rds |binary inst/doc/tablet-introduction-html.R | 28 +- inst/doc/tablet-introduction-html.html | 355 ++++++++++++++++++++++++++++-- inst/doc/tablet-introduction-pdf.R | 28 +- inst/doc/tablet-introduction-pdf.pdf |binary inst/shiny-examples/mesa/app.R | 159 ++++++++++++- inst/shiny-examples/mesa/data/adsl.conf | 2 inst/shiny-examples/mesa/data/mtcars.conf | 2 man/as_tablet.Rd | 60 ++--- man/as_tablet.data.frame.Rd | 58 ++-- man/devalued.observations.Rd | 9 man/groupwise.data.frame.Rd | 11 man/header_rows.Rd | 54 ++-- man/header_rows.tablet.Rd | 56 ++-- man/headerlist.tablette.Rd | 40 +-- man/index.tablette.Rd | 40 +-- man/recap.Rd | 46 +-- man/recap.knitr_kable.Rd | 56 ++-- man/tablet.data.frame.Rd | 19 + man/tablet.tablette.Rd | 126 +++++----- man/tablette.Rd | 46 +-- man/tablette.groupwise.Rd | 70 ++--- man/tablette.tablet.Rd | 74 +++--- man/widgets.devalued.Rd | 2 tests/testthat/004.rds |binary tests/testthat/015.rds |binary tests/testthat/017.rds |binary tests/testthat/test-tablet.R | 2 31 files changed, 967 insertions(+), 475 deletions(-)
Title: Generate Publication Ready Visualizations of Single Cell
Transcriptomics Data
Description: A system that provides a streamlined way of generating
publication ready plots for known Single-Cell transcriptomics data in
a “publication ready” format. This is, the goal is to automatically
generate plots with the highest quality possible, that can be used
right away or with minimal modifications for a research article.
Author: Enrique Blanco-Carmona [cre, aut]
Maintainer: Enrique Blanco-Carmona <scpubr@gmail.com>
Diff between SCpubr versions 3.0.0 dated 2025-08-20 and 3.0.1 dated 2026-01-09
DESCRIPTION | 10 MD5 | 73 - NEWS.md | 12 R/do_ActivityHeatmap.R | 37 R/do_BeeSwarmPlot.R | 12 R/do_CNVHeatmap.R | 44 R/do_CellularStatesPlot.R | 1246 ++++++++++++------------ R/do_CorrelationHeatmap.R | 30 R/do_DotPlot.R | 25 R/do_ExpressionHeatmap.R | 47 R/do_FeaturePlot.R | 8 R/do_LigandReceptorPlot.R | 4 R/do_LoadingsHeatmap.R | 18 R/do_MetadataHeatmap.R | 2 R/do_NebulosaPlot.R | 53 - R/do_PathwayActivityHeatmap.R | 37 R/do_SCExpressionHeatmap.R | 28 R/do_StripPlot.R | 18 R/do_TFActivityHeatmap.R | 37 R/do_TermEnrichmentPlot.R | 36 R/do_WafflePlot.R | 58 - R/globals.R | 5 R/plot_density_patch.R |only R/utils.R | 51 build/partial.rdb |binary build/vignette.rds |binary man/do_ActivityHeatmap.Rd | 2 man/do_CellularStatesPlot.Rd | 2 man/do_DotPlot.Rd | 7 man/do_LigandReceptorPlot.Rd | 4 man/do_WafflePlot.Rd | 2 tests/testthat/setup.R | 20 tests/testthat/test-do_CNVHeatmap.R | 70 - tests/testthat/test-do_DotPlot.R | 51 tests/testthat/test-do_GroupwiseDEHeatmap.R | 56 - tests/testthat/test-do_NebulosaPlot.R | 85 - tests/testthat/test-do_PathwayActivityHeatmap.R | 56 - tests/testthat/test-do_TFActivityHeatmap.R | 60 - 38 files changed, 1295 insertions(+), 1011 deletions(-)
Title: Site Occupancy Modeling for Environmental DNA Metabarcoding
Description: Fits community site occupancy models to environmental DNA
metabarcoding data collected using spatially-replicated survey design.
Model fitting results can be used to evaluate and compare the effectiveness
of species detection to find an efficient survey design.
Reference: Fukaya et al. (2022) <doi:10.1111/2041-210X.13732>,
Fukaya and Hasebe (2025) <doi:10.1002/1438-390X.12219>.
Author: Keiichi Fukaya [aut, cre],
Ken Kellner [cph] ,
Mika Takahashi [aut]
Maintainer: Keiichi Fukaya <fukayak99@gmail.com>
Diff between occumb versions 1.2.1 dated 2025-07-16 and 1.2.2 dated 2026-01-09
DESCRIPTION | 8 ++++---- MD5 | 19 ++++++++++--------- NEWS.md | 5 ++++- R/occumb.R | 6 ++++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/model_specification.html | 2 +- inst/doc/occumb.html | 7 ++++--- tests/testthat/_snaps/summary.md | 2 +- tests/testthat/setup.R |only tests/testthat/test-occumb.R | 8 +++++--- 11 files changed, 33 insertions(+), 24 deletions(-)
Title: Hypothesis Testing for Markov Switching Models
Description: Implementation of hypothesis testing procedures described in Hansen (1992) <doi:10.1002/jae.3950070506>, Carrasco, Hu, & Ploberger (2014) <doi:10.3982/ECTA8609>, Dufour & Luger (2017) <doi:10.1080/07474938.2017.1307548>, and Rodriguez Rondon & Dufour (2024) <https://grodriguezrondon.com/files/RodriguezRondon_Dufour_2025_MonteCarlo_LikelihoodRatioTest_MarkovSwitchingModels_20251014.pdf> that can be used to identify the number of regimes in Markov switching models.
Author: Gabriel Rodriguez Rondon [cre, aut] ,
Jean-Marie Dufour [aut]
Maintainer: Gabriel Rodriguez Rondon <gabriel.rodriguezrondon@mail.mcgill.ca>
Diff between MSTest versions 0.1.6 dated 2025-10-23 and 0.1.8 dated 2026-01-09
MSTest-0.1.6/MSTest/man/plot.Hmmdl.Rd |only MSTest-0.1.8/MSTest/DESCRIPTION | 14 +-- MSTest-0.1.8/MSTest/MD5 | 32 +++---- MSTest-0.1.8/MSTest/NAMESPACE | 2 MSTest-0.1.8/MSTest/NEWS.md | 8 + MSTest-0.1.8/MSTest/R/htest_HLRTest.R | 18 +++- MSTest-0.1.8/MSTest/R/methods.R | 4 MSTest-0.1.8/MSTest/inst/examples/LMCLRTest_examples.R | 11 +- MSTest-0.1.8/MSTest/inst/examples/MMCLRTest_examples.R | 8 - MSTest-0.1.8/MSTest/inst/examples/MSARmdl_examples.R | 2 MSTest-0.1.8/MSTest/inst/examples/article.R | 71 +++++++++-------- MSTest-0.1.8/MSTest/man/LMCLRTest.Rd | 11 +- MSTest-0.1.8/MSTest/man/MMCLRTest.Rd | 8 - MSTest-0.1.8/MSTest/man/MSARXmdl.Rd | 2 MSTest-0.1.8/MSTest/man/MSARmdl.Rd | 2 MSTest-0.1.8/MSTest/man/plot.HMmdl.Rd |only MSTest-0.1.8/MSTest/src/Makevars | 4 MSTest-0.1.8/MSTest/src/Makevars.win | 4 18 files changed, 114 insertions(+), 87 deletions(-)
Title: Convert Gene IDs Between Each Other and Fetch Annotations from
Biomart
Description: Gene Symbols or Ensembl Gene IDs are converted using the Bimap interface in 'AnnotationDbi' in convertId2() but
that function is only provided as fallback mechanism for the most common use cases in data analysis. The main function
in the package is convert.bm() which queries BioMart using the full capacity of the API provided through the
'biomaRt' package. Presets and defaults are provided for convenience but all "marts", "filters" and "attributes"
can be set by the user. Function convert.alias() converts Gene Symbols to Aliases and vice versa and function likely_symbol()
attempts to determine the most likely current Gene Symbol.
Author: Vidal Fey [aut, cre],
Henrik Edgren [aut]
Maintainer: Vidal Fey <vidal.fey@gmail.com>
Diff between convertid versions 0.1.10 dated 2025-02-06 and 0.1.12 dated 2026-01-09
DESCRIPTION | 15 +++++++------ MD5 | 10 ++++---- NAMESPACE | 2 - R/convertId2.R | 56 ++++++++++++++++++++++++++++++++++++++----------- R/get_symbol_aliases.R | 27 +++++++++++++++-------- man/likely_symbol.Rd | 2 - 6 files changed, 76 insertions(+), 36 deletions(-)
Title: Creates Safety Results Summary in XML to Upload to EudraCT, or
ClinicalTrials.gov
Description: The remit of the European Clinical Trials Data Base (EudraCT <https://eudract.ema.europa.eu/> ), or ClinicalTrials.gov <https://clinicaltrials.gov/>, is to provide open access to summaries of all registered clinical trial results; thus aiming to prevent non-reporting of negative results and provide open-access to results to inform future research. The amount of information required and the format of the results, however, imposes a large extra workload at the end of studies on clinical trial units. In particular, the adverse-event-reporting component requires entering: each unique combination of treatment group and safety event; for every such event above, a further 4 pieces of information (body system, number of occurrences, number of subjects, number exposed) for non-serious events, plus an extra three pieces of data for serious adverse events (numbers of causally related events, deaths, causally related deaths). This package prepares the required statistics needed by Eudr [...truncated...]
Author: Simon Bond [cre],
Beatrice Pantaleo [aut]
Maintainer: Simon Bond <simon.bond7@nhs.net>
Diff between eudract versions 1.0.5 dated 2025-10-17 and 1.1.0 dated 2026-01-09
eudract-1.0.5/eudract/inst/extdata/safety__upload.xml |only eudract-1.1.0/eudract/DESCRIPTION | 13 eudract-1.1.0/eudract/MD5 | 42 +- eudract-1.1.0/eudract/NAMESPACE | 2 eudract-1.1.0/eudract/NEWS.md | 8 eudract-1.1.0/eudract/R/safety_summary_adam.R |only eudract-1.1.0/eudract/R/simple_safety_xml.R | 3 eudract-1.1.0/eudract/build/vignette.rds |binary eudract-1.1.0/eudract/inst/doc/ct_result_0004-000245-38.pdf |only eudract-1.1.0/eudract/inst/doc/ct_safety_upload.xml |only eudract-1.1.0/eudract/inst/doc/eudract.R | 11 eudract-1.1.0/eudract/inst/doc/eudract.Rmd | 39 ++ eudract-1.1.0/eudract/inst/doc/eudract.html | 169 +++++++--- eudract-1.1.0/eudract/inst/doc/safety_upload.xml |only eudract-1.1.0/eudract/inst/doc/standard_reporting.Rmd | 2 eudract-1.1.0/eudract/inst/doc/standard_reporting.html | 6 eudract-1.1.0/eudract/inst/extdata/safety_upload.xml |only eudract-1.1.0/eudract/man/safety_summary_adam.Rd |only eudract-1.1.0/eudract/man/simple_safety_xml.Rd | 3 eudract-1.1.0/eudract/tests/testthat/Rplots.pdf |binary eudract-1.1.0/eudract/tests/testthat/_snaps/dotplot/dotplot-non-serious.svg |only eudract-1.1.0/eudract/tests/testthat/test-safety_summary_adam.R |only eudract-1.1.0/eudract/tests/testthat/test_dotplot.R | 2 eudract-1.1.0/eudract/vignettes/.install_extras |only eudract-1.1.0/eudract/vignettes/ct_result_0004-000245-38.pdf |only eudract-1.1.0/eudract/vignettes/ct_safety_upload.xml |only eudract-1.1.0/eudract/vignettes/eudract.Rmd | 39 ++ eudract-1.1.0/eudract/vignettes/safety_upload.xml |only eudract-1.1.0/eudract/vignettes/standard_reporting.Rmd | 2 29 files changed, 268 insertions(+), 73 deletions(-)
Title: 3D Morphological Analyses with 'RRphylo'
Description: Combined with 'RRphylo', this package provides a powerful tool to analyse and visualise 3d models (surfaces and meshes) in a phylogenetically explicit context (Melchionna et al., 2024 <doi:10.1038/s42003-024-06710-8>).
Author: Marina Melchionna [aut],
Silvia Castiglione [aut, cre],
Carmela Serio [aut],
Giorgia Girardi [aut],
Alessandro Mondanaro [aut],
Pasquale Raia [aut]
Maintainer: Silvia Castiglione <silvia.castiglione@unina.it>
Diff between RRmorph versions 0.0.1 dated 2025-05-14 and 0.0.2 dated 2026-01-09
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/conv.map.R | 2 +- build/vignette.rds |binary inst/doc/vignette.html | 26 +++++++++++++------------- man/conv.map.Rd | 2 +- 6 files changed, 25 insertions(+), 25 deletions(-)
Title: Functions for Base Types and Core R and 'Tidyverse' Features
Description: A toolbox for working with base types, core R features
like the condition system, and core 'Tidyverse' features like tidy
evaluation.
Author: Lionel Henry [aut, cre],
Hadley Wickham [aut],
mikefc [cph] ,
Yann Collet [cph] ,
Posit, PBC [cph, fnd]
Maintainer: Lionel Henry <lionel@posit.co>
Diff between rlang versions 1.1.6 dated 2025-04-11 and 1.1.7 dated 2026-01-09
rlang-1.1.6/rlang/src/rlang/altrep.h |only rlang-1.1.7/rlang/DESCRIPTION | 10 rlang-1.1.7/rlang/MD5 | 235 +++++----- rlang-1.1.7/rlang/NAMESPACE | 1 rlang-1.1.7/rlang/NEWS.md | 36 + rlang-1.1.7/rlang/R/aaa-topics.R | 2 rlang-1.1.7/rlang/R/attr.R | 2 rlang-1.1.7/rlang/R/c-lib.R | 4 rlang-1.1.7/rlang/R/call.R | 29 - rlang-1.1.7/rlang/R/cnd-abort.R | 4 rlang-1.1.7/rlang/R/cnd-entrace.R | 4 rlang-1.1.7/rlang/R/cnd-handlers.R | 2 rlang-1.1.7/rlang/R/cnd-message.R | 2 rlang-1.1.7/rlang/R/cnd.R | 5 rlang-1.1.7/rlang/R/dots.R | 11 rlang-1.1.7/rlang/R/env.R | 5 rlang-1.1.7/rlang/R/eval.R | 2 rlang-1.1.7/rlang/R/expr.R | 28 - rlang-1.1.7/rlang/R/formula.R | 8 rlang-1.1.7/rlang/R/hash.R | 4 rlang-1.1.7/rlang/R/lifecycle-deprecated.R | 2 rlang-1.1.7/rlang/R/obj.R | 15 rlang-1.1.7/rlang/R/operators.R | 16 rlang-1.1.7/rlang/R/standalone-cli.R | 209 ++++++-- rlang-1.1.7/rlang/R/standalone-lazyeval.R | 8 rlang-1.1.7/rlang/R/standalone-obj-type.R | 21 rlang-1.1.7/rlang/R/standalone-types-check.R | 11 rlang-1.1.7/rlang/R/types.R | 38 - rlang-1.1.7/rlang/R/utils-cli-tree.R | 4 rlang-1.1.7/rlang/man/abort.Rd | 4 rlang-1.1.7/rlang/man/cnd_muffle.Rd | 2 rlang-1.1.7/rlang/man/entrace.Rd | 2 rlang-1.1.7/rlang/man/env_clone.Rd | 3 rlang-1.1.7/rlang/man/env_print.Rd | 2 rlang-1.1.7/rlang/man/eval_bare.Rd | 2 rlang-1.1.7/rlang/man/f_rhs.Rd | 8 rlang-1.1.7/rlang/man/format_error_bullets.Rd | 2 rlang-1.1.7/rlang/man/hash.Rd | 4 rlang-1.1.7/rlang/man/notes/handling-introspection.R | 2 rlang-1.1.7/rlang/man/op-null-continuation.Rd |only rlang-1.1.7/rlang/man/rmd/topic-data-mask.Rmd | 2 rlang-1.1.7/rlang/man/rmd/topic-error-chaining.Rmd | 8 rlang-1.1.7/rlang/man/set_names.Rd | 2 rlang-1.1.7/rlang/man/topic-data-mask.Rd | 2 rlang-1.1.7/rlang/man/topic-error-chaining.Rd | 8 rlang-1.1.7/rlang/man/vector-coercion.Rd | 2 rlang-1.1.7/rlang/src/internal/ast-rotate.c | 4 rlang-1.1.7/rlang/src/internal/attr.c | 36 + rlang-1.1.7/rlang/src/internal/cnd-handlers.c | 3 rlang-1.1.7/rlang/src/internal/cnd.c | 4 rlang-1.1.7/rlang/src/internal/decl/encoding-decl.h | 7 rlang-1.1.7/rlang/src/internal/decl/env-binding-decl.h |only rlang-1.1.7/rlang/src/internal/decl/env-decl.h | 7 rlang-1.1.7/rlang/src/internal/dots.c | 24 - rlang-1.1.7/rlang/src/internal/encoding.c | 40 - rlang-1.1.7/rlang/src/internal/env-binding.c | 2 rlang-1.1.7/rlang/src/internal/env.c | 13 rlang-1.1.7/rlang/src/internal/env.h | 3 rlang-1.1.7/rlang/src/internal/eval-tidy.c | 13 rlang-1.1.7/rlang/src/internal/exported.c | 24 - rlang-1.1.7/rlang/src/internal/hash.c | 54 -- rlang-1.1.7/rlang/src/internal/internal.c | 12 rlang-1.1.7/rlang/src/internal/names.c | 2 rlang-1.1.7/rlang/src/internal/quo.c | 2 rlang-1.1.7/rlang/src/internal/sym-unescape.c | 2 rlang-1.1.7/rlang/src/internal/vec-raw.c | 4 rlang-1.1.7/rlang/src/rlang/attrib.c | 42 - rlang-1.1.7/rlang/src/rlang/attrib.h | 5 rlang-1.1.7/rlang/src/rlang/c-utils.h | 29 + rlang-1.1.7/rlang/src/rlang/decl/env-decl.h | 5 rlang-1.1.7/rlang/src/rlang/df.c | 2 rlang-1.1.7/rlang/src/rlang/dict.c | 2 rlang-1.1.7/rlang/src/rlang/dyn-array.c | 4 rlang-1.1.7/rlang/src/rlang/dyn-list-of.c | 6 rlang-1.1.7/rlang/src/rlang/env-binding.c | 2 rlang-1.1.7/rlang/src/rlang/env.c | 77 --- rlang-1.1.7/rlang/src/rlang/env.h | 21 rlang-1.1.7/rlang/src/rlang/eval.c | 6 rlang-1.1.7/rlang/src/rlang/export.c | 13 rlang-1.1.7/rlang/src/rlang/export.h | 6 rlang-1.1.7/rlang/src/rlang/fn.h | 27 - rlang-1.1.7/rlang/src/rlang/formula.c | 2 rlang-1.1.7/rlang/src/rlang/node.c | 11 rlang-1.1.7/rlang/src/rlang/node.h | 14 rlang-1.1.7/rlang/src/rlang/obj.c | 4 rlang-1.1.7/rlang/src/rlang/obj.h | 20 rlang-1.1.7/rlang/src/rlang/rlang.h | 1 rlang-1.1.7/rlang/src/rlang/vec.c | 122 ++--- rlang-1.1.7/rlang/src/rlang/vec.h | 77 ++- rlang-1.1.7/rlang/src/rlang/walk.c | 8 rlang-1.1.7/rlang/src/version.c | 2 rlang-1.1.7/rlang/tests/testthat/_snaps/c-api.md | 9 rlang-1.1.7/rlang/tests/testthat/_snaps/cnd-abort.md | 8 rlang-1.1.7/rlang/tests/testthat/_snaps/current/cnd-abort.md | 26 - rlang-1.1.7/rlang/tests/testthat/_snaps/standalone-obj-type.md | 38 + rlang-1.1.7/rlang/tests/testthat/_snaps/standalone-types-check.md | 6 rlang-1.1.7/rlang/tests/testthat/_snaps/trace.md | 51 +- rlang-1.1.7/rlang/tests/testthat/helper-c-api.R | 12 rlang-1.1.7/rlang/tests/testthat/helper-locale.R | 18 rlang-1.1.7/rlang/tests/testthat/test-attr.R | 4 rlang-1.1.7/rlang/tests/testthat/test-c-api.R | 61 ++ rlang-1.1.7/rlang/tests/testthat/test-call.R | 57 ++ rlang-1.1.7/rlang/tests/testthat/test-cnd-abort.R | 15 rlang-1.1.7/rlang/tests/testthat/test-cnd-entrace.R | 23 rlang-1.1.7/rlang/tests/testthat/test-cnd-handlers.R | 2 rlang-1.1.7/rlang/tests/testthat/test-cnd-message.R | 6 rlang-1.1.7/rlang/tests/testthat/test-cnd-signal.R | 5 rlang-1.1.7/rlang/tests/testthat/test-deparse.R | 20 rlang-1.1.7/rlang/tests/testthat/test-env.R | 14 rlang-1.1.7/rlang/tests/testthat/test-expr.R | 21 rlang-1.1.7/rlang/tests/testthat/test-friendly-type.R | 19 rlang-1.1.7/rlang/tests/testthat/test-lifecycle.R | 3 rlang-1.1.7/rlang/tests/testthat/test-nse-inject.R | 6 rlang-1.1.7/rlang/tests/testthat/test-obj.R | 8 rlang-1.1.7/rlang/tests/testthat/test-operators.R | 6 rlang-1.1.7/rlang/tests/testthat/test-session.R | 5 rlang-1.1.7/rlang/tests/testthat/test-standalone-obj-type.R | 38 + rlang-1.1.7/rlang/tests/testthat/test-standalone-types-check.R | 1 rlang-1.1.7/rlang/tests/testthat/test-trace.R | 21 rlang-1.1.7/rlang/tests/testthat/test-types.R | 3 120 files changed, 1167 insertions(+), 876 deletions(-)
Title: Time Series Analysis and Computational Finance
Description: Time series analysis and computational finance.
Author: Adrian Trapletti [aut],
Kurt Hornik [aut, cre] ,
Blake LeBaron [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between tseries versions 0.10-58 dated 2024-09-23 and 0.10-59 dated 2026-01-09
ChangeLog | 6 +++++ DESCRIPTION | 8 +++---- MD5 | 50 ++++++++++++++++++++++++------------------------- build/partial.rdb |binary data/NelPlo.rda |binary data/USeconomic.rda |binary data/bev.rda |binary data/camp.rda |binary data/ice.river.rda |binary data/nino.rda |binary data/tcm.rda |binary data/tcmd.rda |binary man/adf.test.Rd | 1 man/arma.Rd | 3 +- man/bev.Rd | 1 man/garch.Rd | 7 ++++++ man/ice.river.Rd | 1 man/kpss.test.Rd | 1 man/po.test.Rd | 1 man/pp.test.Rd | 4 ++- man/summary.garch.Rd | 1 man/tcm.Rd | 2 - man/tcmd.Rd | 2 - man/terasvirta.test.Rd | 7 +++--- man/tsbootstrap.Rd | 2 + man/white.test.Rd | 7 +++--- 26 files changed, 65 insertions(+), 39 deletions(-)
Title: Valid Inference on Multiple Quantile Regressions
Description: The approach is based on the closed testing procedure to control familywise error rate in a strong sense.
The local tests implemented are Wald-type and rank-score.
The method is described in De Santis, et al., (2026), <doi:10.48550/arXiv.2511.07999>.
Author: Angela Andreella [aut, cre],
Anna Vesely [aut],
Riccardo De Santis [aut]
Maintainer: Angela Andreella <angela.andreella@unive.it>
Diff between quasar versions 0.1.0 dated 2025-11-18 and 0.2.0 dated 2026-01-09
DESCRIPTION | 18 +++-- MD5 | 26 ++++---- NAMESPACE | 11 +++ R/closedTesting.R | 3 R/rankTest.R | 149 +++++++++++++++++++++++++++++++++++++++++++---- R/simulateData.R | 36 ++++++----- R/utils.R | 137 +++++++++++++++++++++++++++++++++++++++++++ R/waldTest.R | 2 README.md | 4 - man/build_B_from_dist.Rd |only man/closedTesting.Rd | 3 man/dot-pImhof.Rd |only man/rankTest.Rd | 45 +++++++++++++- man/simulateData.Rd | 25 +++++-- man/waldTest.Rd | 2 15 files changed, 401 insertions(+), 60 deletions(-)
Title: Japanese Text Processing Tools
Description: A collection of Japanese text processing tools for filling
Japanese iteration marks, Japanese character type conversions,
segmentation by phrase, and text normalization which is based on rules
for the 'Sudachi' morphological analyzer and the 'NEologd' (Neologism
dictionary for 'MeCab'). These features are specific to Japanese and
are not implemented in 'ICU' (International Components for Unicode).
Author: Akiru Kato [cre, aut],
Koki Takahashi [cph] ,
Shuhei Iitsuka [cph] ,
Taku Kudo [cph]
Maintainer: Akiru Kato <paithiov909@gmail.com>
Diff between audubon versions 0.6.1 dated 2025-12-21 and 0.6.2 dated 2026-01-09
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/labellers.R | 4 ++++ R/strj-tokenize.R | 6 +++--- R/tokenize-impl.R | 5 +++-- man/label_date_jp.Rd | 2 ++ man/label_wrap_jp.Rd | 2 ++ 8 files changed, 28 insertions(+), 15 deletions(-)
Title: Sparse Time Series Chain Graphical Models
Description: Computes sparse vector autoregressive coefficients and sparse
precision matrices for time series chain graphical models. Methods are
described in Abegaz and Wit (2013)
<doi:10.1093/biostatistics/kxt005>.
Author: Fentaw Abegaz [aut, cre],
Ernst Wit [aut]
Maintainer: Fentaw Abegaz <fentawabegaz@yahoo.com>
This is a re-admission after prior archival of version 4.0 dated 2021-01-13
Diff between SparseTSCGM versions 4.0 dated 2021-01-13 and 4.1 dated 2026-01-09
SparseTSCGM-4.0/SparseTSCGM/man/print.summary.Rd |only SparseTSCGM-4.1/SparseTSCGM/DESCRIPTION | 27 +- SparseTSCGM-4.1/SparseTSCGM/MD5 | 33 +- SparseTSCGM-4.1/SparseTSCGM/NAMESPACE | 19 + SparseTSCGM-4.1/SparseTSCGM/R/compute.sparse.tscgm.R | 2 SparseTSCGM-4.1/SparseTSCGM/R/plot.tscgm.R | 14 - SparseTSCGM-4.1/SparseTSCGM/R/plot.tscgm.ar2.r | 13 - SparseTSCGM-4.1/SparseTSCGM/R/pre.tscgm.R | 2 SparseTSCGM-4.1/SparseTSCGM/R/print.tscgm.R | 9 SparseTSCGM-4.1/SparseTSCGM/R/sparse.tscgm.R | 96 +++++++ SparseTSCGM-4.1/SparseTSCGM/R/summary.tscgm.R | 8 SparseTSCGM-4.1/SparseTSCGM/man/SparseTSCGM-package.Rd | 13 - SparseTSCGM-4.1/SparseTSCGM/man/mammary.Rd | 76 ++--- SparseTSCGM-4.1/SparseTSCGM/man/plot.tscgm.Rd | 63 ---- SparseTSCGM-4.1/SparseTSCGM/man/plot.tscgm.ar2.Rd | 72 ----- SparseTSCGM-4.1/SparseTSCGM/man/print.tscgm.Rd |only SparseTSCGM-4.1/SparseTSCGM/man/sparse.tscgm.Rd | 217 ++++++----------- SparseTSCGM-4.1/SparseTSCGM/man/summary.tscgm.Rd | 64 +---- SparseTSCGM-4.1/SparseTSCGM/src/init.c |only 19 files changed, 343 insertions(+), 385 deletions(-)
Title: Functional Programming Tools
Description: A complete and consistent functional programming toolkit for
R.
Author: Hadley Wickham [aut, cre] ,
Lionel Henry [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between purrr versions 1.2.0 dated 2025-11-04 and 1.2.1 dated 2026-01-09
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/arrays.R | 6 +++++- build/vignette.rds |binary man/in_parallel.Rd | 9 ++++----- 6 files changed, 21 insertions(+), 14 deletions(-)
Title: Incremental Calculation of Dynamic Time Warping
Description: The Dynamic Time Warping (DTW) distance measure for time series allows non-linear alignments of time series to match similar patterns in time series of different lengths and or different speeds. IncDTW is characterized by (1) the incremental calculation of DTW (reduces runtime complexity to a linear level for updating the DTW distance) - especially for life data streams or subsequence matching, (2) the vector based implementation of DTW which is faster because no matrices are allocated (reduces the space complexity from a quadratic to a linear level in the number of observations) - for all runtime intensive DTW computations, (3) the subsequence matching algorithm runDTW, that efficiently finds the k-NN to a query pattern in a long time series, and (4) C++ in the heart. For details about DTW see the original paper "Dynamic programming algorithm optimization for spoken word recognition" by Sakoe and Chiba (1978) <DOI:10.1109/TASSP.1978.1163055>. For details about this package, Dyn [...truncated...]
Author: Maximilian Leodolter [aut, cre]
Maintainer: Maximilian Leodolter <maximilian.leodolter@gmail.com>
Diff between IncDTW versions 1.1.4.5 dated 2025-10-07 and 1.1.4.6 dated 2026-01-09
DESCRIPTION | 6 MD5 | 16 build/partial.rdb |binary inst/doc/Theory_and_Applications_for_the_R_Package_IncDTW.pdf |binary inst/doc/Theory_and_Applications_for_the_R_Package_IncDTW.pdf.asis | 8 man/DBA.Rd | 338 +++++----- src/Makevars | 1 src/Makevars.win | 1 vignettes/Theory_and_Applications_for_the_R_Package_IncDTW.pdf.asis | 8 9 files changed, 188 insertions(+), 190 deletions(-)
Title: A User-Friendly 'shiny' Application for Exploring Associations
and Visual Patterns
Description: A user-friendly 'shiny' application to explore statistical associations and visual patterns in multivariate datasets. The app provides interactive correlation networks, bivariate plots, and summary tables for different types of variables (numeric and categorical). It also supports optional survey weights and range-based filters on association strengths, making it suitable for the exploration of survey and public data by non-technical users, journalists, educators, and researchers. For background and methodological details, see Soetewey et al. (2025) <doi:10.1016/j.softx.2025.102483>.
Author: Antoine Soetewey [aut, cre] ,
Cedric Heuchenne [aut] ,
Arnaud Claes [aut] ,
Antonin Descampe [aut]
Maintainer: Antoine Soetewey <antoine.soetewey@uclouvain.be>
Diff between AssociationExplorer2 versions 0.1.2 dated 2025-12-15 and 0.1.4 dated 2026-01-09
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- README.md | 6 ++---- inst/CITATION | 14 ++++++++------ 4 files changed, 17 insertions(+), 17 deletions(-)
More information about AssociationExplorer2 at CRAN
Permanent link
Title: Analysis of Visual Meteor Data
Description: Provides a suite of analytical functionalities to process and analyze
visual meteor observations from the Visual Meteor Database
of the International Meteor Organization <https://www.imo.net/>.
Author: Janko Richter [aut, cre]
Maintainer: Janko Richter <janko@richtej.de>
Diff between vismeteor versions 2.0.1 dated 2025-09-19 and 2.0.2 dated 2026-01-09
DESCRIPTION | 6 MD5 | 48 ++--- NEWS.md | 11 - R/mideal.R | 3 R/vmgeom.R | 34 ++-- R/vmgeom_vst.R | 43 ++--- R/vmideal.R | 27 +-- R/vmideal_vst.R | 93 +++++------ build/vignette.rds |binary inst/doc/vismeteor.Rmd | 20 +- inst/doc/vismeteor.html | 38 ++-- inst/doc/vmgeom.R | 167 +++++++++++++------- inst/doc/vmgeom.Rmd | 246 +++++++++++++++++++++--------- inst/doc/vmgeom.html | 386 +++++++++++++++++++++++++++++------------------- inst/doc/vmideal.R | 10 - inst/doc/vmideal.Rmd | 46 +++-- inst/doc/vmideal.html | 86 ++++++---- man/mideal.Rd | 3 man/vmgeom.Rd | 28 ++- man/vmgeomVst.Rd | 8 man/vmideal.Rd | 19 +- man/vmidealVst.Rd | 8 vignettes/vismeteor.Rmd | 20 +- vignettes/vmgeom.Rmd | 246 +++++++++++++++++++++--------- vignettes/vmideal.Rmd | 46 +++-- 25 files changed, 1034 insertions(+), 608 deletions(-)
Title: Music Notation Syntax, Manipulation, Analysis and Transcription
in R
Description: Provides a music notation syntax and a collection of music
programming functions for generating, manipulating, organizing, and analyzing
musical information in R. Music syntax can be entered directly in character
strings, for example to quickly transcribe short pieces of music. The
package contains functions for directly performing various mathematical,
logical and organizational operations and musical transformations on special
object classes that facilitate working with music data and notation. The
same music data can be organized in tidy data frames for a familiar and
powerful approach to the analysis of large amounts of structured music data.
Functions are available for mapping seamlessly between these formats and
their representations of musical information. The package also provides an
API to 'LilyPond' (<https://lilypond.org/>) for transcribing musical
representations in R into tablature ("tabs") and sheet music. 'LilyPond' is
open source music engraving software for gener [...truncated...]
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <rpkgs@pm.me>
Diff between tabr versions 0.5.4 dated 2025-10-31 and 0.5.5 dated 2026-01-09
DESCRIPTION | 6 +++--- MD5 | 28 ++++++++++++++-------------- NEWS.md | 4 ++++ README.md | 4 ++-- inst/doc/tabr-prog-chords.html | 5 +++-- inst/doc/tabr-prog-music.html | 5 +++-- inst/doc/tabr-prog-noteinfo.html | 5 +++-- inst/doc/tabr-prog-notes.html | 5 +++-- inst/doc/tabr-prog-nw.html | 5 +++-- inst/doc/tabr-prog-scales.R | 2 +- inst/doc/tabr-prog-scales.Rmd | 2 +- inst/doc/tabr-prog-scales.html | 5 +++-- tests/testthat/test-chord-mapping.R | 2 +- tests/testthat/test-phrase.R | 2 +- vignettes/tabr-prog-scales.Rmd | 2 +- 15 files changed, 46 insertions(+), 36 deletions(-)
Title: Statistical Disclosure Control Methods for Anonymization of Data
and Risk Estimation
Description: Data from statistical agencies and other institutions are mostly
confidential. This package, introduced in Templ, Kowarik and Meindl (2017) <doi:10.18637/jss.v067.i04>, can be used for the generation of anonymized
(micro)data, i.e. for the creation of public- and scientific-use files.
The theoretical basis for the methods implemented can be found in Templ (2017) <doi:10.1007/978-3-319-50272-4>.
Various risk estimation and anonymization methods are included. Note that the package
includes a graphical user interface published in Meindl and Templ (2019) <doi:10.3390/a12090191> that allows to use various methods of this
package.
Author: Matthias Templ [aut, cre] ,
Bernhard Meindl [aut],
Alexander Kowarik [aut] ,
Johannes Gussenbauer [aut],
Organisation For Economic Co-Operation And Development [cph] code code for rank swapping,
mdav-microaggregation, suda2 and other risk
measures [...truncated...]
Maintainer: Matthias Templ <matthias.templ@gmail.com>
Diff between sdcMicro versions 5.7.9 dated 2025-08-22 and 5.8.0 dated 2026-01-09
DESCRIPTION | 18 +++++++++------- MD5 | 41 +++++++++++++++++++++++++------------- NAMESPACE | 6 ++++- NEWS | 4 +++ R/0classes.r | 1 R/KI_applyAnonymization.R |only R/KI_createSdcObj.R |only R/aux_functions.r | 7 ++++-- R/ki_access_utilities.R |only R/ki_anonymization_utilities.R |only R/maG.R | 1 R/pram.R | 3 -- R/rankSwap.R | 1 build/partial.rdb |binary build/vignette.rds |binary inst/doc/sdcMicro.html | 4 +-- inst/shiny/sdcApp/global.R | 35 +++++++++++++++++++++++++++++++- man/KI_applyAnonymization.Rd |only man/KI_createSdcObj.Rd |only man/build_anonymization_prompt.Rd |only man/build_llm_prompt.Rd |only man/clean_llm_code.Rd |only man/extract_variable_metadata.Rd |only man/microaggrGower.Rd | 1 man/patch_groupAndRename_age.Rd |only man/pram.Rd | 7 +----- man/query_llm_for_roles.Rd |only man/read_codebook_snippet.Rd |only 28 files changed, 93 insertions(+), 36 deletions(-)
Title: Access to the 'RESOURCECODE' Hindcast Database
Description: Utility functions to download data from the 'RESOURCECODE'
hindcast database of sea-states, time series of sea-state parameters
and time series of 1D and 2D wave spectra. See
<https://resourcecode.ifremer.fr> for more details about the available
data. Also provides facilities to plot and analyse downloaded data,
such as computing the sea-state parameters from both the 1D and 2D
surface elevation variance spectral density.
Author: Nicolas Raillard [aut, cre]
Maintainer: Nicolas Raillard <nicolas.raillard@ifremer.fr>
Diff between resourcecode versions 0.5.1 dated 2025-12-16 and 0.5.2 dated 2026-01-09
DESCRIPTION | 9 ++---- MD5 | 20 +++++++------- NEWS.md | 4 ++ R/specta_data_processing.R | 20 ++++---------- R/spectral_data_download.R | 32 ++++++++++++++++++----- man/compute_sea_state_1d_spectrum.Rd | 8 +---- man/compute_sea_state_2d_spectrum.Rd | 8 +---- tests/testthat/Rplots.pdf |binary tests/testthat/test-data_download.R | 40 +++++++++++++++++++++++++++++ tests/testthat/test-orbital_speed.R | 6 ++-- tests/testthat/test-plots.R | 48 ++++++++++++++++++++--------------- 11 files changed, 124 insertions(+), 71 deletions(-)
Title: Easily Create Production-Ready Rich Text Format (RTF) Tables and
Figures
Description: Create production-ready Rich Text Format (RTF) tables and figures
with flexible format.
Author: Yilong Zhang [aut],
Siruo Wang [aut],
Simiao Ye [aut],
Fansen Kong [aut],
Brian Lang [aut],
Benjamin Wang [aut, cre],
Nan Xiao [ctb],
Madhusudhan Ginnaram [ctb],
Ruchitbhai Patel [ctb],
Huei-Ling Chen [ctb],
Peikun Wu [ctb],
Uday Preetham Palukuru [c [...truncated...]
Maintainer: Benjamin Wang <benjamin.wang@merck.com>
Diff between r2rtf versions 1.2.0 dated 2025-08-22 and 1.3.0 dated 2026-01-09
DESCRIPTION | 8 MD5 | 52 +++-- NAMESPACE | 2 NEWS.md | 30 ++- R/as_rtf_pageby.R | 1 R/conversion.R | 5 R/rtf_convert_format.R | 3 R/rtf_encode_table.R | 10 - R/rtf_rich_text.R | 11 - R/rtf_strwidth.R | 7 R/rtf_table_content.R | 1 R/safe_graphics.R |only R/write_rtf.R | 117 +++++++++++ build/vignette.rds |binary inst/doc/r2rtf-cran.html | 5 man/assemble_docx.Rd | 2 man/write_docx.Rd |only man/write_html.Rd |only tests/testthat/_snaps |only tests/testthat/test-independent-testing-rtf_encode_table.R | 75 +++++++ tests/testthat/test-independent-testing-rtf_nrow.R | 5 tests/testthat/test-independent-testing-rtf_strwidth.R | 10 - tests/testthat/test-independent-testing-safe_graphics.R |only tests/testthat/test-independent-testing-write_rtf.R | 127 +++++++++++++ 24 files changed, 417 insertions(+), 54 deletions(-)
Title: Plot a Model's Residuals, Response, and Partial Dependence Plots
Description: Plot model surfaces for a wide variety of models
using partial dependence plots and other techniques.
Also plot model residuals and other information on the model.
Author: Stephen Milborrow [aut, cre]
Maintainer: Stephen Milborrow <milbo@sonic.net>
Diff between plotmo versions 3.6.4 dated 2024-08-30 and 3.7.0 dated 2026-01-09
plotmo-3.6.4/plotmo/.Rinstignore |only plotmo-3.7.0/plotmo/DESCRIPTION | 6 plotmo-3.7.0/plotmo/MD5 | 89 +-- plotmo-3.7.0/plotmo/NAMESPACE | 4 plotmo-3.7.0/plotmo/NEWS.md | 8 plotmo-3.7.0/plotmo/R/lib.R | 19 plotmo-3.7.0/plotmo/R/pint.R | 53 +- plotmo-3.7.0/plotmo/inst/doc/modguide.pdf |binary plotmo-3.7.0/plotmo/inst/doc/plotmo-notes.pdf |binary plotmo-3.7.0/plotmo/inst/doc/plotres-notes.pdf |binary plotmo-3.7.0/plotmo/inst/slowtests/darlingtonia.tab |only plotmo-3.7.0/plotmo/inst/slowtests/make.README.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.c50.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.caret.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.center.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.degree.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.dots.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.fac.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.gbm.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.glmnet.Rout.save | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.glmnet.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.glmnetUtils.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.linmod.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.mlr.Rout.save | 15 plotmo-3.7.0/plotmo/inst/slowtests/test.mlr.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.modguide.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.non.earth.Rout.save | 17 plotmo-3.7.0/plotmo/inst/slowtests/test.non.earth.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.parsnip.Rout.save | 28 - plotmo-3.7.0/plotmo/inst/slowtests/test.parsnip.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.partdep.Rout.save | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.partdep.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.partykit.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.plotmo.Rout.save | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.plotmo.args.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.plotmo.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.plotmo.dots.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.plotmo.x.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.plotmo3.R | 55 ++ plotmo-3.7.0/plotmo/inst/slowtests/test.plotmo3.Rout.save | 290 +++++++++++- plotmo-3.7.0/plotmo/inst/slowtests/test.plotmo3.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.plotres.Rout.save | 4 plotmo-3.7.0/plotmo/inst/slowtests/test.plotres.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.pre.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.printcall.bat | 2 plotmo-3.7.0/plotmo/inst/slowtests/test.unusual.vars.bat | 2 plotmo-3.7.0/plotmo/man/plotres.Rd | 2 47 files changed, 513 insertions(+), 135 deletions(-)
Title: Model Evaluation and Analysis
Description: Analyses species distribution models and evaluates their performance. It includes functions for variation partitioning, extracting variable importance, computing several metrics of model discrimination and calibration performance, optimizing prediction thresholds based on a number of criteria, performing multivariate environmental similarity surface (MESS) analysis, and displaying various analytical plots. Initially described in Barbosa et al. (2013) <doi:10.1111/ddi.12100>.
Author: A. Marcia Barbosa [aut, cre],
Jennifer A. Brown [aut],
Alberto Jimenez-Valverde [aut],
Raimundo Real [aut],
Oswald van Ginkel [ctb],
Jurica Levatic [ctb],
Victoria Formoso-Freire [ctb],
Andres Baselga [ctb],
Carola Gomez-Rodriguez [ctb],
Jose Carlos [...truncated...]
Maintainer: A. Marcia Barbosa <ana.marcia.barbosa@gmail.com>
Diff between modEvA versions 3.40 dated 2025-09-20 and 3.41 dated 2026-01-09
DESCRIPTION | 9 +++++---- MD5 | 22 +++++++++++----------- NEWS.md | 20 +++++++++++++++++++- R/AUC.R | 3 ++- R/Boyce.R | 22 ++++++++++++++-------- R/OA.R | 4 ++-- R/evaluate.R | 4 ++-- data/rotif.mods.rda |binary man/AUC.Rd | 5 +++-- man/Boyce.Rd | 17 +++++++++++------ man/modEvA-package.Rd | 4 ++-- man/threshMeasures.Rd | 4 ++-- 12 files changed, 73 insertions(+), 41 deletions(-)
Title: Missing Person Identification Tools
Description: A comprehensive toolkit for missing person identification combining
genetic and non-genetic evidence within a Bayesian framework. Computes
likelihood ratios (LRs) for DNA profiles, biological sex, age, hair color,
and birthdate evidence. Provides decision analysis tools including optimal
LR thresholds, error rate calculations, and ROC curve visualization.
Includes interactive Shiny applications for exploring evidence combinations.
For methodological details see Marsico et al. (2023) <doi:10.1016/j.fsigen.2023.102891>
and Marsico, Vigeland et al. (2021) <doi:10.1016/j.fsigen.2021.102519>.
Author: Franco Marsico [aut, cre]
Maintainer: Franco Marsico <franco.lmarsico@gmail.com>
Diff between mispitools versions 1.2.0 dated 2024-08-16 and 1.4.0 dated 2026-01-09
mispitools-1.2.0/mispitools/R/CPT_MP.R |only mispitools-1.2.0/mispitools/R/CPT_POP.R |only mispitools-1.2.0/mispitools/R/Cmodel.R |only mispitools-1.2.0/mispitools/R/CondPlot.R |only mispitools-1.2.0/mispitools/R/DeT.R |only mispitools-1.2.0/mispitools/R/LRage.R |only mispitools-1.2.0/mispitools/R/LRcol.R |only mispitools-1.2.0/mispitools/R/LRcolors.R |only mispitools-1.2.0/mispitools/R/LRdate.R |only mispitools-1.2.0/mispitools/R/LRdist.R |only mispitools-1.2.0/mispitools/R/LRsex.R |only mispitools-1.2.0/mispitools/R/Trates.R |only mispitools-1.2.0/mispitools/R/bidirectionalKL.R |only mispitools-1.2.0/mispitools/R/combLR.R |only mispitools-1.2.0/mispitools/R/compute_LRs_colors.R |only mispitools-1.2.0/mispitools/R/conditionedProp.R |only mispitools-1.2.0/mispitools/R/deplot.R |only mispitools-1.2.0/mispitools/R/getfreqs.R |only mispitools-1.2.0/mispitools/R/klPIE.R |only mispitools-1.2.0/mispitools/R/makeMPprelim.R |only mispitools-1.2.0/mispitools/R/makePOIgen.R |only mispitools-1.2.0/mispitools/R/makePOIprelim.R |only mispitools-1.2.0/mispitools/R/markersFromPed.R |only mispitools-1.2.0/mispitools/R/mispiApp.R |only mispitools-1.2.0/mispitools/R/mispitools.R |only mispitools-1.2.0/mispitools/R/multi_kl_divergence.R |only mispitools-1.2.0/mispitools/R/postSim.R |only mispitools-1.2.0/mispitools/R/refProp.R |only mispitools-1.2.0/mispitools/R/simLR2dataframe.R |only mispitools-1.2.0/mispitools/R/simLRgen.R |only mispitools-1.2.0/mispitools/R/simLRprelim.R |only mispitools-1.2.0/mispitools/R/simRef.R |only mispitools-1.2.0/mispitools/man/CPT_MP.Rd |only mispitools-1.2.0/mispitools/man/CPT_POP.Rd |only mispitools-1.2.0/mispitools/man/Cmodel.Rd |only mispitools-1.2.0/mispitools/man/CondPlot.Rd |only mispitools-1.2.0/mispitools/man/DeT.Rd |only mispitools-1.2.0/mispitools/man/LRage.Rd |only mispitools-1.2.0/mispitools/man/LRcol.Rd |only mispitools-1.2.0/mispitools/man/LRcolors.Rd |only mispitools-1.2.0/mispitools/man/LRdate.Rd |only mispitools-1.2.0/mispitools/man/LRdist.Rd |only mispitools-1.2.0/mispitools/man/LRsex.Rd |only mispitools-1.2.0/mispitools/man/Trates.Rd |only mispitools-1.2.0/mispitools/man/bidirectionalKL.Rd |only mispitools-1.2.0/mispitools/man/combLR.Rd |only mispitools-1.2.0/mispitools/man/compute_LRs_colors.Rd |only mispitools-1.2.0/mispitools/man/conditionedProp.Rd |only mispitools-1.2.0/mispitools/man/deplot.Rd |only mispitools-1.2.0/mispitools/man/getfreqs.Rd |only mispitools-1.2.0/mispitools/man/klPIE.Rd |only mispitools-1.2.0/mispitools/man/makeMPprelim.Rd |only mispitools-1.2.0/mispitools/man/makePOIgen.Rd |only mispitools-1.2.0/mispitools/man/makePOIprelim.Rd |only mispitools-1.2.0/mispitools/man/mispiApp.Rd |only mispitools-1.2.0/mispitools/man/multi_kl_divergence.Rd |only mispitools-1.2.0/mispitools/man/postSim.Rd |only mispitools-1.2.0/mispitools/man/refProp.Rd |only mispitools-1.2.0/mispitools/man/simLR2dataframe.Rd |only mispitools-1.2.0/mispitools/man/simLRgen.Rd |only mispitools-1.2.0/mispitools/man/simLRprelim.Rd |only mispitools-1.2.0/mispitools/man/simRef.Rd |only mispitools-1.4.0/mispitools/DESCRIPTION | 37 - 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Title: Use LaTeX Expressions in Plots
Description: Parses and converts LaTeX math formulas to R's plotmath
expressions, used to enter mathematical formulas and symbols to be rendered as
text, axis labels, etc. throughout R's plotting system.
Author: Stefano Meschiari [aut, cre]
Maintainer: Stefano Meschiari <stefano.meschiari@gmail.com>
Diff between latex2exp versions 0.9.6 dated 2022-11-27 and 0.9.8 dated 2026-01-09
latex2exp-0.9.6/latex2exp/tests/testthat/Rplots.pdf |only latex2exp-0.9.8/latex2exp/DESCRIPTION | 15 latex2exp-0.9.8/latex2exp/MD5 | 47 latex2exp-0.9.8/latex2exp/NAMESPACE | 12 latex2exp-0.9.8/latex2exp/NEWS.md | 26 latex2exp-0.9.8/latex2exp/R/demos.R | 11 latex2exp-0.9.8/latex2exp/R/latex2exp.R | 211 +- latex2exp-0.9.8/latex2exp/R/parser.R | 356 ++- latex2exp-0.9.8/latex2exp/R/plots.R | 56 latex2exp-0.9.8/latex2exp/R/symbols.R | 20 latex2exp-0.9.8/latex2exp/R/utils.R | 26 latex2exp-0.9.8/latex2exp/build/vignette.rds |binary latex2exp-0.9.8/latex2exp/inst/doc/supported-commands.R | 39 latex2exp-0.9.8/latex2exp/inst/doc/supported-commands.Rmd | 33 latex2exp-0.9.8/latex2exp/inst/doc/supported-commands.html | 1164 +++---------- latex2exp-0.9.8/latex2exp/inst/doc/using-latex2exp.R | 53 latex2exp-0.9.8/latex2exp/inst/doc/using-latex2exp.Rmd | 36 latex2exp-0.9.8/latex2exp/inst/doc/using-latex2exp.html | 85 latex2exp-0.9.8/latex2exp/man/TeX.Rd | 43 latex2exp-0.9.8/latex2exp/man/latex2exp.Rd | 8 latex2exp-0.9.8/latex2exp/man/print.latextoken2.Rd | 4 latex2exp-0.9.8/latex2exp/man/render_latex.Rd | 12 latex2exp-0.9.8/latex2exp/tests/testthat/test_simple.R | 7 latex2exp-0.9.8/latex2exp/vignettes/supported-commands.Rmd | 33 latex2exp-0.9.8/latex2exp/vignettes/using-latex2exp.Rmd | 36 25 files changed, 949 insertions(+), 1384 deletions(-)
Title: Ion Selective Electrodes Analysis Methods
Description: Characterisation and calibration of single or multiple Ion Selective Electrodes (ISEs);
activity estimation of experimental samples. Implements methods described in:
Dillingham, P.W., Radu, T., Diamond, D., Radu, A. and McGraw, C.M. (2012) <doi:10.1002/elan.201100510>,
Dillingham, P.W., Alsaedi, B.S.O. and McGraw, C.M. (2017) <doi:10.1109/ICSENS.2017.8233898>,
Dillingham, P.W., Alsaedi, B.S.O., Radu, A., and McGraw, C.M. (2019) <doi:10.3390/s19204544>, and
Dillingham, P.W., Alsaedi, B.S.O., Granados-Focil, S., Radu, A., and McGraw, C.M. (2020) <doi:10.1021/acssensors.9b02133>.
Author: Peter Dillingham [aut, cre],
Christina McGraw [ctb],
Aleksandar Radu [ctb],
Basim Alsaedi [ctb]
Maintainer: Peter Dillingham <peter.dillingham@otago.ac.nz>
This is a re-admission after prior archival of version 3.2.0 dated 2022-10-19
Diff between ISEtools versions 3.2.0 dated 2022-10-19 and 3.2.1 dated 2026-01-09
DESCRIPTION | 12 ++--- MD5 | 46 ++++++++++----------- NAMESPACE | 4 - R/ISEdata.calibration.R | 20 +++++++-- R/analyseISE.R | 56 ++++++++++++------------- R/describeISE.R | 56 ++++++++++++------------- R/gen.inits.multiple.R | 26 ++++++------ R/gen.inits.single.R | 18 ++++---- R/loadISEdata.R | 97 ++++++++++++++++++++++++++++++--------------- R/plot.ISEdata.R | 5 +- R/plot.ISEdescription.R | 41 +++++++++---------- R/plot.analyseISE.R | 48 +++++++++++----------- R/print.ISEdata.R | 22 ++++------ R/print.ISEdescription.R | 6 +- R/print.analyseISE.R | 5 +- R/summary.ISEdata.R | 4 - R/summary.ISEdescription.R | 4 - build/vignette.rds |binary inst/CITATION | 55 ++++++++++++++++--------- inst/doc/ISEtools.pdf |binary man/ISEtools-package.Rd | 15 ------ man/LeadStdAdd.Rd | 12 ----- man/analyseISE.Rd | 31 ++++++-------- man/describeISE.Rd | 28 +++++------- 24 files changed, 320 insertions(+), 291 deletions(-)
Title: Harrell Miscellaneous
Description: Contains many functions useful for data
analysis, high-level graphics, utility operations, functions for
computing sample size and power, simulation, importing and annotating datasets,
imputing missing values, advanced table making, variable clustering,
character string manipulation, conversion of R objects to LaTeX and html code,
recoding variables, caching, simplified parallel computing, encrypting and decrypting data using a safe workflow, general moving window statistical estimation, and assistance in interpreting principal component analysis.
Author: Frank E Harrell Jr [aut, cre] ,
Cole Beck [ctb],
Charles Dupont [ctb]
Maintainer: Frank E Harrell Jr <fh@fharrell.com>
Diff between Hmisc versions 5.2-4 dated 2025-10-05 and 5.2-5 dated 2026-01-09
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 3 +++ R/gbayesSeqSim.r | 4 ++-- R/num.intercepts.s | 22 +++++++++++++--------- man/estSeqSim.Rd | 4 ++-- 6 files changed, 29 insertions(+), 22 deletions(-)
Title: Quantifying and Monetizing Health Impacts Attributable to
Exposure
Description: This R package has been developed with a focus on air pollution and noise but can applied to other exposures. The initial development has been funded by the European Union project BEST-COST. Disclaimer: It is work in progress and the developers are not liable for any calculation errors or inaccuracies resulting from the use of this package.
References (in chronological order):
WHO (2003a) "Assessing the environmental burden of disease at national and local levels" <https://www.who.int/publications/i/item/9241546204> (accessed October 2025);
WHO (2003b) "Comparative quantification of health risks: Conceptual framework and methodological issues" <doi:10.1186/1478-7954-1-1> (accessed October 2025);
Miller & Hurley (2003) "Life table methods for quantitative impact assessments in chronic mortality" <doi:10.1136/jech.57.3.200> (accessed October 2025);
Steenland & Armstrong (2006) "An Overview of Methods for Calculating the Burden of Disease Due to Specific Risk Fac [...truncated...]
Author: Alberto Castro [cre, aut] ,
Axel Luyten [aut] ,
Arno Pauwels [ctb] ,
Liliana Vazquez Fernandez [ctb] ,
Gianni Ardielli [ctb] ,
Iracy Pimenta [ctb] ,
Susanne Breitner [ctb] ,
Carl Baravelli [ctb] ,
Vanessa Gorasso [ctb] ,
Maria Lepnurm [ctb] ,
Andreia [...truncated...]
Maintainer: Alberto Castro <alberto.castrofernandez@swisstph.ch>
Diff between healthiar versions 0.2.1.1 dated 2026-01-07 and 0.2.2 dated 2026-01-09
healthiar-0.2.1.1/healthiar/R/zzz.R |only healthiar-0.2.2/healthiar/DESCRIPTION | 30 healthiar-0.2.2/healthiar/MD5 | 52 healthiar-0.2.2/healthiar/NEWS.md | 22 healthiar-0.2.2/healthiar/R/check_if_args_identical.R | 2 healthiar-0.2.2/healthiar/R/get_risk.R | 35 healthiar-0.2.2/healthiar/R/get_risk_and_pop_fraction.R | 8 healthiar-0.2.2/healthiar/R/validate_input_attribute.R | 26 healthiar-0.2.2/healthiar/R/zzz_global_variables.R |only healthiar-0.2.2/healthiar/R/zzz_startup.R |only healthiar-0.2.2/healthiar/README.md | 97 healthiar-0.2.2/healthiar/build/vignette.rds |binary healthiar-0.2.2/healthiar/data/exdat_cantons.rda |binary healthiar-0.2.2/healthiar/data/exdat_lifetable.rda |binary healthiar-0.2.2/healthiar/data/exdat_noise.rda |binary healthiar-0.2.2/healthiar/data/exdat_ozone.rda |binary healthiar-0.2.2/healthiar/data/exdat_pm.rda |binary healthiar-0.2.2/healthiar/data/exdat_prepare_mdi.rda |binary healthiar-0.2.2/healthiar/data/exdat_socialize.rda |binary healthiar-0.2.2/healthiar/inst/CITATION | 38 healthiar-0.2.2/healthiar/inst/doc/intro_to_healthiar.R | 1341 healthiar-0.2.2/healthiar/inst/doc/intro_to_healthiar.Rmd | 915 healthiar-0.2.2/healthiar/inst/doc/intro_to_healthiar.html |15272 ++++------ healthiar-0.2.2/healthiar/inst/figures |only healthiar-0.2.2/healthiar/man/figures |only healthiar-0.2.2/healthiar/man/get_risk.Rd | 33 healthiar-0.2.2/healthiar/tests/testthat/data/HeliLog-logcurve.csv |only healthiar-0.2.2/healthiar/tests/testthat/test-attribute_health.R | 2763 + healthiar-0.2.2/healthiar/tests/testthat/test-get_risk.R | 19 healthiar-0.2.2/healthiar/vignettes/intro_to_healthiar.Rmd | 915 30 files changed, 10762 insertions(+), 10806 deletions(-)
Title: Greedy Experimental Design Construction
Description: Computes experimental designs for two-arm experiments with
covariates using multiple methods, including: (0) complete randomization
and randomization with forced-balance; (1) greedy optimization of a balance
objective function via pairwise switching; (2) numerical optimization via
'gurobi'; (3) rerandomization; (4) Karp's method for one covariate; (5)
exhaustive enumeration for small sample sizes; (6) binary pair matching
using 'nbpMatching'; (7) binary pair matching plus method (1) to further
optimize balance; (8) binary pair matching plus method (3) to further
optimize balance; (9) Hadamard designs; and (10) simultaneous multiple
kernels. For the greedy, rerandomization, and related methods, three
objective functions are supported: Mahalanobis distance, standardized sums
of absolute differences, and kernel distances via the 'kernlab' library.
This package is the result of a stream of research that can be found in
Krieger, A. M., Azriel, D. A., and Kapelner, A. (2019). "Nearly Random
[...truncated...]
Author: Adam Kapelner [aut, cre] ,
David Azriel [aut],
Abba Krieger [aut]
Maintainer: Adam Kapelner <kapelner@qc.cuny.edu>
Diff between GreedyExperimentalDesign versions 1.5.6.1 dated 2023-07-12 and 1.6 dated 2026-01-09
GreedyExperimentalDesign-1.5.6.1/GreedyExperimentalDesign/R/complete_randomization.R |only GreedyExperimentalDesign-1.5.6.1/GreedyExperimentalDesign/data |only GreedyExperimentalDesign-1.5.6.1/GreedyExperimentalDesign/man/automobile.Rd |only GreedyExperimentalDesign-1.5.6.1/GreedyExperimentalDesign/man/initBinaryMatchExperimentalDesignSearch.Rd |only GreedyExperimentalDesign-1.5.6.1/GreedyExperimentalDesign/man/initBinaryMatchFollowedByGreedyExperimentalDesignSearch.Rd |only GreedyExperimentalDesign-1.5.6.1/GreedyExperimentalDesign/man/initBinaryMatchFollowedByRerandomizationDesignSearch.Rd |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/.Rinstignore |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/CHANGELOG | 117 - GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/DESCRIPTION | 86 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/MD5 | 160 - GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/NAMESPACE | 16 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/R/GreedyExperimentalDesign.R | 35 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/R/RcppExports.R | 122 - GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/R/binary_match_followed_by_greedy_search.R | 334 +-- GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/R/binary_match_followed_by_rerandomization_search.R | 304 +- GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/R/binary_match_search.R | 550 ++-- GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/R/complete_randomization_and_blocking.R |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/R/globals.R |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/R/greedy_multiple_kernel_search.R | 725 +++--- GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/R/greedy_orthogonalization_curation.R | 121 - GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/R/greedy_orthogonalization_curation2.R | 85 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/R/greedy_search.R | 1103 +++++----- GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/R/gurobi_numerical_optimization_orthogonalization_curation.R | 112 - GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/R/gurobi_numerical_optimization_search.R | 1096 +++++++-- GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/R/hadamard_search.R | 135 - GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/R/karp_search.R | 262 +- GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/R/kernel_functions.R | 169 - GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/R/optimal_search.R | 403 ++- GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/R/randomization_metrics.R | 94 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/R/rerandomization_search.R | 449 ++-- GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/R/shared.R | 508 +++- GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/R/zzz.R | 32 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/inst/java/GreedyExperimentalDesign.jar |binary GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/java/README | 2 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/GreedyExperimentalDesign.Rd | 1 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/all_elements_same_cpp_wrap.Rd |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/complete_randomization.Rd | 7 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/complete_randomization_with_forced_balanced.Rd | 16 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/computeBinaryMatchStructure.Rd | 19 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/compute_distance_matrix_cpp_wrap.Rd |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/compute_gram_matrix.Rd | 8 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/compute_objective_val.Rd | 18 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/compute_randomization_metrics.Rd | 6 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/create_all_ys_cpp_wrap.Rd |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/gen_pm_designs_cpp_wrap.Rd |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/gen_var_cov_matrix_block_designs.Rd |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/generate_block_design_cpp_wrap.Rd |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/generate_stdzied_design_matrix.Rd | 6 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/greedy_orthogonalization_curation.Rd | 10 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/greedy_orthogonalization_curation2.Rd | 10 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/hadamardExperimentalDesign.Rd | 10 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/imbalanced_block_designs.Rd | 13 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/imbalanced_complete_randomization.Rd | 11 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/initBinaryMatchExperimentalDesignSearchObject.Rd |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/initBinaryMatchFollowedByGreedyExperimentalDesignSearchObject.Rd |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/initBinaryMatchFollowedByRerandomizationDesignSearchObject.Rd |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/initGreedyExperimentalDesignObject.Rd | 37 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/initGreedyMultipleKernelExperimentalDesignObject.Rd | 38 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/initGurobiNumericalOptimizationExperimentalDesignObject.Rd |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/initKarpExperimentalDesignObject.Rd | 21 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/initOptimalExperimentalDesignObject.Rd | 26 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/initRerandomizationExperimentalDesignObject.Rd | 28 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/optimize_asymmetric_treatment_assignment.Rd | 12 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/plot_obj_val_by_iter.Rd | 18 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/plot_obj_val_order_statistic.Rd | 16 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/resultsBinaryMatchSearch.Rd | 18 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/resultsBinaryMatchThenGreedySearch.Rd | 23 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/resultsBinaryMatchThenRerandomizationSearch.Rd | 24 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/resultsGreedySearch.Rd | 37 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/resultsGurobiNumericalOptimizeSearch.Rd |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/resultsKarpSearch.Rd | 15 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/resultsMultipleKernelGreedySearch.Rd | 34 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/resultsOptimalSearch.Rd | 16 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/resultsRerandomizationSearch.Rd | 18 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/safe_cov_inverse.Rd |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/searchTimeElapsed.Rd | 16 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/shuffle_cpp_wrap.Rd |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/standardize_data_matrix.Rd | 7 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/startSearch.Rd | 17 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/man/stopSearch.Rd | 16 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/src/RcppExports.cpp | 325 ++ GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/src/binary_match_utils.cpp |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/src/create_block_allocation.cpp |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/src/fast_shuffle.cpp | 60 GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/src/greedy_orthogonalization.cpp |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/src/indicTs_from_pairs.cpp |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/src/kernel_matrix.cpp |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/src/kernel_quadratic_forms.cpp |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/src/mahalanobis.cpp |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/src/objective_and_standardize.cpp |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/src/objective_batch.cpp |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/src/pair_differences.cpp |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/src/random_designs.cpp |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/src/randomization_metrics.cpp |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/src/var_cov_block.cpp |only GreedyExperimentalDesign-1.6/GreedyExperimentalDesign/tests |only 96 files changed, 5080 insertions(+), 2897 deletions(-)
More information about GreedyExperimentalDesign at CRAN
Permanent link
Title: Authenticate and Create Google APIs
Description: Create R functions that interact with OAuth2 Google APIs
<https://developers.google.com/apis-explorer/> easily,
with auto-refresh and Shiny compatibility.
Author: Mark Edmondson [aut] ,
Erik Groenroos [cre],
Jennifer Bryan [ctb],
Johann deBoer [ctb],
Neal Richardson [ctb],
David Kulp [ctb],
Joe Cheng [ctb]
Maintainer: Erik Groenroos <erik.gronroos@8-bit-sheep.com>
Diff between googleAuthR versions 2.0.2 dated 2024-05-22 and 2.0.2.1 dated 2026-01-09
DESCRIPTION | 8 LICENSE | 2 MD5 | 230 ++--- NAMESPACE | 198 ++-- NEWS.md | 480 ++++++------ R/auth.R | 538 ++++++------- R/auth_gargle.R | 296 +++---- R/auth_legacy.R | 142 +-- R/auto_auth.R | 358 ++++---- R/batch.R | 878 +++++++++++----------- R/checks.R | 520 ++++++------- R/debugging.R | 76 - R/discovery.R | 628 +++++++-------- R/discovery_build.R | 498 ++++++------ R/discovery_utilities.R | 482 ++++++------ R/gce.R | 244 +++--- R/generator.R | 812 ++++++++++---------- R/googleAuthR.R | 68 - R/memoise.R | 388 ++++----- R/new_batch.R | 196 ++-- R/options.R | 124 +-- R/page_results.R | 298 +++---- R/scopes.R | 40 - R/service_creation.R | 640 ++++++++-------- R/set_client.R | 302 +++---- R/setup_wizard.R | 496 ++++++------ R/setup_wizard_auth.R | 458 +++++------ R/shiny-js-auth.R | 50 - R/shiny-js-signin.R | 148 +-- R/shiny-modifyurl.R | 580 +++++++------- R/shiny.R | 334 ++++---- R/test-helpers.R | 28 R/utility.R | 516 ++++++------ README.md | 168 ++-- build/vignette.rds |binary inst/css/button.css | 86 +- inst/doc/advanced-building.Rmd | 778 +++++++++---------- inst/doc/advanced-building.html | 30 inst/doc/building.Rmd | 720 +++++++++--------- inst/doc/building.html | 7 inst/doc/google-authentication-types.Rmd | 794 +++++++++---------- inst/doc/google-authentication-types.html | 7 inst/doc/setup.Rmd | 104 +- inst/doc/setup.html | 7 inst/doc/troubleshooting.Rmd | 164 ++-- inst/doc/troubleshooting.html | 9 inst/googledrive_shiny_demo/listGoogleDrive/app.R | 82 +- inst/js/js-auth.js | 48 - inst/js/signin-bottom.js | 40 - inst/js/signin-top.js | 28 inst/rstudio/addins.dcf | 6 inst/server_side_auth_demo/DESCRIPTION | 10 inst/server_side_auth_demo/readme.md | 4 inst/server_side_auth_demo/server.R | 82 +- inst/server_side_auth_demo/ui.R | 18 inst/server_side_auth_function/DESCRIPTION | 10 inst/server_side_auth_function/app.R | 68 - inst/server_side_auth_function/readme.md | 78 - inst/signin_demo/app/app.R | 80 +- man/checkGoogleAPIError.Rd | 30 man/checkTokenAPI.Rd | 32 man/doHttrRequest.Rd | 66 - man/gar_api_generator.Rd | 152 +-- man/gar_api_page.Rd | 204 ++--- man/gar_attach_auto_auth.Rd | 102 +- man/gar_auth.Rd | 150 +-- man/gar_auth_configure.Rd | 160 ++-- man/gar_auth_service.Rd | 96 +- man/gar_auto_auth.Rd | 86 +- man/gar_batch.Rd | 152 +-- man/gar_batch_walk.Rd | 270 +++--- man/gar_cache_setup.Rd | 136 +-- man/gar_check_existing_token.Rd | 42 - man/gar_create_api_objects.Rd | 58 - man/gar_create_api_skeleton.Rd | 60 - man/gar_create_package.Rd | 112 +- man/gar_deauth.Rd | 58 - man/gar_debug_parsing.Rd | 34 man/gar_discovery_api.Rd | 62 - man/gar_discovery_apis_list.Rd | 48 - man/gar_gce_auth.Rd | 100 +- man/gar_gce_auth_default.Rd | 100 +- man/gar_gce_auth_email.Rd | 44 - man/gar_has_token.Rd | 46 - man/gar_scope_config.Rd | 28 man/gar_service_create.Rd | 242 +++--- man/gar_service_provision.Rd | 96 +- man/gar_set_client.Rd | 134 +-- man/gar_setup_auth_check.Rd | 58 - man/gar_setup_auth_key.Rd | 88 +- man/gar_setup_clientid.Rd | 58 - man/gar_setup_edit_renviron.Rd | 84 +- man/gar_setup_env_check.Rd | 74 - man/gar_setup_get_authenv.Rd | 38 man/gar_setup_menu.Rd | 58 - man/gar_setup_menu_do.Rd | 142 +-- man/gar_shiny_auth.Rd | 144 +-- man/gar_shiny_auth_url.Rd | 84 +- man/gar_shiny_login_ui.Rd | 54 - man/gar_shiny_ui.Rd | 144 +-- man/gar_token.Rd | 72 - man/gar_token_info.Rd | 28 man/get_google_token.Rd | 54 - man/googleAuthR.Rd | 120 +-- man/googleSignIn.Rd | 60 - man/googleSignInUI.Rd | 56 - man/retryRequest.Rd | 30 man/should_skip_token_checks.Rd | 78 - man/silent_auth.Rd | 44 - man/skip_if_no_env_auth.Rd | 28 man/token_exists.Rd | 52 - vignettes/advanced-building.Rmd | 778 +++++++++---------- vignettes/building.Rmd | 720 +++++++++--------- vignettes/google-authentication-types.Rmd | 794 +++++++++---------- vignettes/setup.Rmd | 104 +- vignettes/troubleshooting.Rmd | 164 ++-- 116 files changed, 10788 insertions(+), 10804 deletions(-)
Title: Efficient Learning of Word Representations and Sentence
Classification
Description: An interface to the 'fastText' <https://github.com/facebookresearch/fastText> library for efficient learning of word representations and sentence classification. The 'fastText' algorithm is explained in detail in (i) "Enriching Word Vectors with subword Information", Piotr Bojanowski, Edouard Grave, Armand Joulin, Tomas Mikolov, 2017, <doi:10.1162/tacl_a_00051>; (ii) "Bag of Tricks for Efficient Text Classification", Armand Joulin, Edouard Grave, Piotr Bojanowski, Tomas Mikolov, 2017, <doi:10.18653/v1/e17-2068>; (iii) "FastText.zip: Compressing text classification models", Armand Joulin, Edouard Grave, Piotr Bojanowski, Matthijs Douze, Herve Jegou, Tomas Mikolov, 2016, <doi:10.48550/arXiv.1612.03651>.
Author: Lampros Mouselimis [aut, cre] ,
Facebook Inc [cph]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between fastText versions 1.0.4 dated 2024-02-17 and 1.0.5 dated 2026-01-09
fastText-1.0.4/fastText/README.md |only fastText-1.0.4/fastText/src/init.c |only fastText-1.0.5/fastText/DESCRIPTION | 22 fastText-1.0.5/fastText/MD5 | 26 fastText-1.0.5/fastText/NEWS.md | 8 fastText-1.0.5/fastText/build/vignette.rds |binary fastText-1.0.5/fastText/inst/doc/language_identification.R | 1160 +++++----- fastText-1.0.5/fastText/inst/doc/language_identification.Rmd | 6 fastText-1.0.5/fastText/inst/doc/language_identification.html | 110 fastText-1.0.5/fastText/inst/doc/the_fastText_R_package.html | 18 fastText-1.0.5/fastText/src/Makevars | 3 fastText-1.0.5/fastText/src/Makevars.win | 3 fastText-1.0.5/fastText/src/RcppExports.cpp | 21 fastText-1.0.5/fastText/src/args.cc | 2 fastText-1.0.5/fastText/vignettes/language_identification.Rmd | 6 15 files changed, 703 insertions(+), 682 deletions(-)
Title: A Dipping Sauce for Data Analysis and Visualizations
Description: Works as an "add-on" to packages like 'shiny', 'future', as well as
'rlang', and provides utility functions. Just like dipping sauce adding
flavors to potato chips or pita bread, 'dipsaus' for data analysis and
visualizations adds handy functions and enhancements to popular packages.
The goal is to provide simple solutions that are frequently asked for
online, such as how to synchronize 'shiny' inputs without freezing the app,
or how to get memory size on 'Linux' or 'MacOS' system. The enhancements
roughly fall into these four categories: 1. 'shiny' input widgets; 2.
high-performance computing using the 'future' package; 3.
modify R calls and convert among numbers, strings, and other objects. 4.
utility functions to get system information such like CPU chip-set, memory
limit, etc.
Author: Zhengjia Wang [aut, cre],
John Magnotti [ctb] ,
Xiang Zhang [ctb]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between dipsaus versions 0.3.2 dated 2025-11-17 and 0.3.3 dated 2026-01-09
DESCRIPTION | 6 MD5 | 49 NAMESPACE | 4 NEWS.md | 9 R/lock.R | 88 - R/map-abstract.R | 2 R/map-rds.R | 51 R/map-txt.R | 36 R/persist.R | 67 R/shiny-download-stream.R |only R/shiny-fancyFileInput.R | 971 ++++++++++++ R/systems.R | 30 R/utils-filesystem.R | 9 R/zzz.R | 38 demo/00Index | 1 demo/example-fancyDirectoryInput.R |only inst/doc/r_expr_addons.html | 6 inst/doc/shiny_customized_widgets.html | 1745 +++++++++++++++++++++- inst/doc/utility_functions.html | 2 inst/shiny-addons/dipsaus/dipsaus-dipterix-lib.js | 1616 ++++++++++++++++++++ inst/shiny-addons/dipsaus/dipsaus.css | 147 + inst/shiny-addons/dipsaus/streamsaver |only man/fancyDirectoryInput.Rd |only man/fancyFileInput.Rd | 3 man/get_dipsaus_upload_dir.Rd |only man/get_os.Rd | 4 man/observeDirectoryProgress.Rd |only man/stream_download.Rd |only tests/testthat/test-locks.R |only 29 files changed, 4749 insertions(+), 135 deletions(-)
Title: Statistical Functions for the Delaporte Distribution
Description: Provides probability mass, distribution, quantile, random-variate
generation, and method-of-moments parameter-estimation functions for the
Delaporte distribution with parameterization based on Vose (2008)
<isbn:9780470512845>. The Delaporte is a discrete probability distribution
which can be considered the convolution of a negative binomial distribution
with a Poisson distribution. Alternatively, it can be considered a counting
distribution with both Poisson and negative binomial components. It has been
studied in actuarial science as a frequency distribution which has more
variability than the Poisson, but less than the negative binomial.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between Delaporte versions 8.4.2 dated 2025-07-17 and 8.4.3 dated 2026-01-09
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NAMESPACE | 20 ++++++++++++++++---- R/Delaporte.R | 8 ++++---- R/omp.R | 1 - R/zzz.R | 8 ++++++-- build/partial.rdb |binary inst/CITATION | 2 +- inst/NEWS.Rd | 15 +++++++++++++++ src/delaporte.f90 | 4 +++- src/utils.f90 | 4 ++-- 11 files changed, 61 insertions(+), 29 deletions(-)
Title: Connecting to Various Database Platforms
Description: An R 'DataBase Interface' ('DBI') compatible interface to various database platforms ('PostgreSQL', 'Oracle', 'Microsoft SQL Server',
'Amazon Redshift', 'Microsoft Parallel Database Warehouse', 'IBM Netezza', 'Apache Impala', 'Google BigQuery', 'Snowflake', 'Spark', 'SQLite',
and 'InterSystems IRIS'). Also includes support for fetching data as 'Andromeda' objects. Uses either 'Java Database Connectivity' ('JDBC') or
other 'DBI' drivers to connect to databases.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut],
Adam Black [aut],
Observational Health Data Science and Informatics [cph],
Microsoft Inc. [cph] ,
PostgreSQL Global Development Group [cph] ,
Oracle Inc. [cph] ,
Amazon Inc. [cph]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between DatabaseConnector versions 7.0.0 dated 2025-09-23 and 7.1.0 dated 2026-01-09
DESCRIPTION | 8 ++--- MD5 | 56 ++++++++++++++++++------------------ NAMESPACE | 1 NEWS.md | 14 +++++++++ R/Andromeda.R | 2 - R/BulkLoad.R | 2 - R/Compression.R | 2 - R/Connect.R | 18 ++++++++++- R/CtasHack.R | 2 - R/DBI.R | 2 - R/DataHash.R | 2 - R/DatabaseConnector.R | 2 - R/Drivers.R | 2 - R/HelperFunctions.R | 2 - R/InsertTable.R | 2 - R/ListTables.R | 4 +- R/LowLevelFunctions.R | 2 - R/RStudio.R | 2 - R/Sql.R | 2 - R/backend-DatabaseConnector.R | 20 ++++++++++++ inst/doc/Connecting.Rmd | 4 +- inst/doc/Connecting.pdf |binary inst/doc/DbiAndDbplyr.pdf |binary inst/doc/Querying.pdf |binary man/connect.Rd | 9 +++++ man/createConnectionDetails.Rd | 9 +++++ tests/testthat/test-getTableNames.R | 7 ++++ tests/testthat/test-insertTable.R | 4 +- vignettes/Connecting.Rmd | 4 +- 29 files changed, 128 insertions(+), 56 deletions(-)
More information about DatabaseConnector at CRAN
Permanent link
Title: Primal or Dual Cone Projections with Routines for Constrained
Regression
Description: Routines doing cone projection and quadratic programming, as well as doing estimation and inference for constrained parametric regression and shape-restricted regression problems. See Mary C. Meyer (2013)<doi:10.1080/03610918.2012.659820> for more details.
Author: Mary C. Meyer [aut],
Xiyue Liao [aut, cre]
Maintainer: Xiyue Liao <xliao@sdsu.edu>
Diff between coneproj versions 1.22 dated 2025-11-16 and 1.23 dated 2026-01-09
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/coneproj.cpp | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: A Collection of Statistical Tools for Biologists
Description: Contains functions from: Aho, K. (2014) Foundational and Applied Statistics for Biologists using R. CRC/Taylor and Francis, Boca Raton, FL, ISBN: 978-1-4398-7338-0.
Author: Ken Aho [aut, cre]
Maintainer: Ken Aho <kenaho1@gmail.com>
Diff between asbio versions 1.12-1 dated 2025-10-31 and 1.12-2 dated 2026-01-09
DESCRIPTION | 8 +- MD5 | 87 ++++++++++++----------- R/book.menu.r | 135 ++++++++++++++++++------------------ R/r.dist.r | 37 +++++----- R/see.Fcdf.r | 3 R/see.HW.r | 1 R/see.accPrec.tck.r | 2 R/see.ancova.tck.r | 1 R/see.anova.tck.r | 2 R/see.betacdf.r | 3 R/see.bincdf.r | 3 R/see.chicdf.r | 2 R/see.cor.range.tck.r | 6 + R/see.expcdf.r | 3 R/see.exppower.r | 2 R/see.gamcdf.r | 2 R/see.geocdf.r | 2 R/see.hypercdf.r | 2 R/see.lnormcdf.r | 2 R/see.logiscdf.r | 2 R/see.mnom.tck.r | 4 - R/see.nbincdf.r | 2 R/see.nlm.r | 1 R/see.normcdf.r | 3 R/see.poiscdf.r | 2 R/see.power.r | 5 - R/see.rEffect.tck.r | 1 R/see.regression.tck.r | 2 R/see.roc.tck.r | 2 R/see.smooth.tck.r | 3 R/see.tcdf.r | 2 R/see.ttest.tck.r | 1 R/see.unifcdf.r | 2 R/see.weibcdf.r | 2 R/see_discunifcdf.R | 2 R/selftest.comb.r |only R/selftest.prob.r | 172 ++++++++++++++++++++++++++++------------------- R/selftest.sampd.r | 2 build/vignette.rds |binary inst/doc/ranefCov.pdf |binary inst/doc/simpson.pdf |binary inst/doc/typeISS_key.pdf |binary man/bin2dec.rd | 6 - man/r.dist.rd | 16 ++-- man/selftest.se.tck1.rd | 5 - 45 files changed, 316 insertions(+), 224 deletions(-)
Title: Data from the 'Access to Opportunities Project (AOP)'
Description: Download data from the 'Access to Opportunities Project (AOP)'. The
'aopdata' package brings annual estimates of access to employment,
health, education and social assistance services by transport mode,
as well as data on the spatial distribution of population, jobs,
health care, schools and social assistance facilities at a fine
spatial resolution for all cities included in the project. More
info on the 'AOP' website <https://www.ipea.gov.br/acessooportunidades/en/>.
Author: Rafael H. M. Pereira [aut, cre] ,
Daniel Herszenhut [aut] ,
Marcus Saraiva [aut] ,
Carlos Kaue Vieira Braga [aut] ,
Diego Bogado Tomasiello [ctb],
Joao Bazzo [ctb],
Ipea - Institute for Applied Economic Research [cph, fnd]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between aopdata versions 1.1.1 dated 2025-01-28 and 1.1.2 dated 2026-01-09
aopdata-1.1.1/aopdata/inst/doc/intro_to_aopdata.R |only aopdata-1.1.1/aopdata/inst/doc/intro_to_aopdata.Rmd |only aopdata-1.1.1/aopdata/inst/doc/intro_to_aopdata.html |only aopdata-1.1.1/aopdata/vignettes/intro_to_aopdata.Rmd |only aopdata-1.1.1/aopdata/vignettes/pandoc2f9018eb4531.html |only aopdata-1.1.2/aopdata/DESCRIPTION | 27 aopdata-1.1.2/aopdata/LICENSE | 4 aopdata-1.1.2/aopdata/MD5 | 127 - aopdata-1.1.2/aopdata/NEWS.md | 15 aopdata-1.1.2/aopdata/R/aopdata.R | 54 aopdata-1.1.2/aopdata/R/aopdata_dictionary.R | 74 aopdata-1.1.2/aopdata/R/download_metadata.R | 129 - aopdata-1.1.2/aopdata/R/read_access.R | 495 +++-- aopdata-1.1.2/aopdata/R/read_grid.R | 160 - aopdata-1.1.2/aopdata/R/read_landuse.R | 320 +-- aopdata-1.1.2/aopdata/R/read_population.R | 261 +-- aopdata-1.1.2/aopdata/R/utils.R | 840 +++++----- aopdata-1.1.2/aopdata/README.md | 18 aopdata-1.1.2/aopdata/build/vignette.rds |binary aopdata-1.1.2/aopdata/inst/CITATION | 56 aopdata-1.1.2/aopdata/inst/doc/access_inequality.R | 36 aopdata-1.1.2/aopdata/inst/doc/access_inequality.Rmd | 209 +- aopdata-1.1.2/aopdata/inst/doc/access_inequality.html | 123 - aopdata-1.1.2/aopdata/inst/doc/access_maps.R | 23 aopdata-1.1.2/aopdata/inst/doc/access_maps.Rmd | 137 - aopdata-1.1.2/aopdata/inst/doc/access_maps.html | 50 aopdata-1.1.2/aopdata/inst/doc/aopdata.R |only aopdata-1.1.2/aopdata/inst/doc/aopdata.Rmd |only aopdata-1.1.2/aopdata/inst/doc/aopdata.html |only aopdata-1.1.2/aopdata/inst/doc/data_dic_en.R | 3 aopdata-1.1.2/aopdata/inst/doc/data_dic_en.Rmd | 289 +-- aopdata-1.1.2/aopdata/inst/doc/data_dic_en.html | 108 + aopdata-1.1.2/aopdata/inst/doc/data_dic_pt.R | 3 aopdata-1.1.2/aopdata/inst/doc/data_dic_pt.Rmd | 277 +-- aopdata-1.1.2/aopdata/inst/doc/data_dic_pt.html | 108 + aopdata-1.1.2/aopdata/inst/doc/landuse_maps.R | 27 aopdata-1.1.2/aopdata/inst/doc/landuse_maps.Rmd | 185 +- aopdata-1.1.2/aopdata/inst/doc/landuse_maps.html | 56 aopdata-1.1.2/aopdata/inst/doc/population_maps.R | 23 aopdata-1.1.2/aopdata/inst/doc/population_maps.Rmd | 172 +- aopdata-1.1.2/aopdata/inst/doc/population_maps.html | 50 aopdata-1.1.2/aopdata/man/aop_merge.Rd | 40 aopdata-1.1.2/aopdata/man/aopdata_dictionary.Rd | 60 aopdata-1.1.2/aopdata/man/check_downloaded_obj.Rd | 36 aopdata-1.1.2/aopdata/man/read_access.Rd | 17 aopdata-1.1.2/aopdata/man/read_grid.Rd | 2 aopdata-1.1.2/aopdata/man/read_landuse.Rd | 18 aopdata-1.1.2/aopdata/man/read_population.Rd | 18 aopdata-1.1.2/aopdata/man/roxygen/templates/city.R | 4 aopdata-1.1.2/aopdata/man/roxygen/templates/geometry.R | 8 aopdata-1.1.2/aopdata/man/roxygen/templates/showProgress.R | 2 aopdata-1.1.2/aopdata/man/roxygen/templates/year.R | 2 aopdata-1.1.2/aopdata/tests/tests_rafa/test_rafa.R | 2 aopdata-1.1.2/aopdata/tests/testthat.R | 16 aopdata-1.1.2/aopdata/tests/testthat/test_aopdata_dictionary.R | 46 aopdata-1.1.2/aopdata/tests/testthat/test_check_connection.R | 74 aopdata-1.1.2/aopdata/tests/testthat/test_read_access.R | 240 +- aopdata-1.1.2/aopdata/tests/testthat/test_read_grid.R | 120 - aopdata-1.1.2/aopdata/tests/testthat/test_read_landuse.R | 152 - aopdata-1.1.2/aopdata/tests/testthat/test_read_population.R | 132 - aopdata-1.1.2/aopdata/tests/testthat/test_utils.R | 76 aopdata-1.1.2/aopdata/vignettes/access_inequality.Rmd | 209 +- aopdata-1.1.2/aopdata/vignettes/access_maps.Rmd | 137 - aopdata-1.1.2/aopdata/vignettes/aopdata.Rmd |only aopdata-1.1.2/aopdata/vignettes/data_dic_en.Rmd | 289 +-- aopdata-1.1.2/aopdata/vignettes/data_dic_pt.Rmd | 277 +-- aopdata-1.1.2/aopdata/vignettes/landuse_maps.Rmd | 185 +- aopdata-1.1.2/aopdata/vignettes/population_maps.Rmd | 172 +- aopdata-1.1.2/aopdata/vignettes/references.json | 80 69 files changed, 3616 insertions(+), 3257 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-06-27 0.9.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-15 0.3.0
2016-08-21 0.2.0
2016-02-28 0.1.5
2016-01-21 0.1.4
2015-12-14 0.1.3
2015-10-31 0.1.2
2015-10-04 0.1
Title: Spatially Explicit Capture-Recapture for Linear Habitats
Description: Tools for spatially explicit capture-recapture analysis of animal populations in linear habitats, extending package 'secr'.
Author: Murray Efford [aut, cre]
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between secrlinear versions 1.2.4 dated 2024-10-22 and 1.2.5 dated 2026-01-09
secrlinear-1.2.4/secrlinear/vignettes/secrlinear-vignette_cache/latex/simCH_b933fd091c93db5f7daaa1c9aa066114.RData |only secrlinear-1.2.4/secrlinear/vignettes/secrlinear-vignette_cache/latex/simCH_b933fd091c93db5f7daaa1c9aa066114.rdb |only secrlinear-1.2.4/secrlinear/vignettes/secrlinear-vignette_cache/latex/simCH_b933fd091c93db5f7daaa1c9aa066114.rdx |only secrlinear-1.2.5/secrlinear/DESCRIPTION | 11 secrlinear-1.2.5/secrlinear/MD5 | 24 secrlinear-1.2.5/secrlinear/NEWS | 8 secrlinear-1.2.5/secrlinear/build/partial.rdb |binary secrlinear-1.2.5/secrlinear/build/vignette.rds |binary secrlinear-1.2.5/secrlinear/inst/doc/secrlinear-vignette.R | 304 +++++----- secrlinear-1.2.5/secrlinear/inst/doc/secrlinear-vignette.Rmd | 2 secrlinear-1.2.5/secrlinear/inst/doc/secrlinear-vignette.pdf |binary secrlinear-1.2.5/secrlinear/man/secrlinear-package.Rd | 9 secrlinear-1.2.5/secrlinear/vignettes/secrlinear-vignette.Rmd | 2 secrlinear-1.2.5/secrlinear/vignettes/secrlinear-vignette_cache/latex/simCH_858b8d81a06e8248b5f827d9937420d0.RData |only secrlinear-1.2.5/secrlinear/vignettes/secrlinear-vignette_cache/latex/simCH_858b8d81a06e8248b5f827d9937420d0.rdb |only secrlinear-1.2.5/secrlinear/vignettes/secrlinear-vignette_cache/latex/simCH_858b8d81a06e8248b5f827d9937420d0.rdx |only 16 files changed, 185 insertions(+), 175 deletions(-)
Title: ROBust INference for Covariate Adjustment in Randomized Clinical
Trials
Description: Performs robust estimation and inference when using covariate adjustment
and/or covariate-adaptive randomization in randomized controlled trials.
This package is trimmed to reduce the dependencies and validated to be used across industry.
See "FDA's final guidance on covariate adjustment"<https://www.regulations.gov/docket/FDA-2019-D-0934>, Tsiatis (2008) <doi:10.1002/sim.3113>,
Bugni et al. (2018) <doi:10.1080/01621459.2017.1375934>, Ye, Shao, Yi, and Zhao (2023)<doi:10.1080/01621459.2022.2049278>,
Ye, Shao, and Yi (2022)<doi:10.1093/biomet/asab015>, Rosenblum and van der Laan (2010)<doi:10.2202/1557-4679.1138>,
Wang et al. (2021)<doi:10.1080/01621459.2021.1981338>, Ye, Bannick, Yi, and Shao (2023)<doi:10.1080/24754269.2023.2205802>,
and Bannick, Shao, Liu, Du, Yi, and Ye (2024)<doi:10.48550/arXiv.2306.10213>.
Author: Liming Li [aut, cre] ,
Marlena Bannick [aut] ,
Daniel Sabanes Bove [aut] ,
Dong Xi [aut],
Ting Ye [aut],
Yanyao Yi [aut],
Gregory Chen [ctb],
Gilead Sciences, Inc. [cph, fnd],
F. Hoffmann-La Roche AG [cph, fnd],
Merck Sharp & Dohme, Inc. [cph, fnd],
[...truncated...]
Maintainer: Liming Li <liming.li1@astrazeneca.com>
Diff between RobinCar2 versions 0.2.1 dated 2025-09-11 and 0.2.2 dated 2026-01-09
RobinCar2-0.2.1/RobinCar2/man/get_beta_estimates.Rd |only RobinCar2-0.2.2/RobinCar2/DESCRIPTION | 8 RobinCar2-0.2.2/RobinCar2/MD5 | 81 +- RobinCar2-0.2.2/RobinCar2/NEWS.md | 21 RobinCar2-0.2.2/RobinCar2/R/bias.R | 57 + RobinCar2-0.2.2/RobinCar2/R/robin_glm.R | 35 - RobinCar2-0.2.2/RobinCar2/R/robin_lm.R | 20 RobinCar2-0.2.2/RobinCar2/R/surv_effect.R | 67 +- RobinCar2-0.2.2/RobinCar2/R/survival.R | 187 ++++- RobinCar2-0.2.2/RobinCar2/R/survival_cov_adj.R | 153 +++- RobinCar2-0.2.2/RobinCar2/R/survival_score.R | 211 ++++-- RobinCar2-0.2.2/RobinCar2/R/utils.R | 76 ++ RobinCar2-0.2.2/RobinCar2/R/variance_anhecova.R | 6 RobinCar2-0.2.2/RobinCar2/build/vignette.rds |binary RobinCar2-0.2.2/RobinCar2/inst/WORDLIST | 2 RobinCar2-0.2.2/RobinCar2/inst/doc/intro.Rmd | 6 RobinCar2-0.2.2/RobinCar2/inst/doc/intro.html | 36 - RobinCar2-0.2.2/RobinCar2/man/bias.Rd | 2 RobinCar2-0.2.2/RobinCar2/man/derived_outcome_vals.Rd | 18 RobinCar2-0.2.2/RobinCar2/man/get_lm_input.Rd | 10 RobinCar2-0.2.2/RobinCar2/man/get_lm_results.Rd |only RobinCar2-0.2.2/RobinCar2/man/h_first_fct_nested_in_second.Rd |only RobinCar2-0.2.2/RobinCar2/man/h_prep_survival_input.Rd | 1 RobinCar2-0.2.2/RobinCar2/man/h_unbiased_means_across_strata.Rd |only RobinCar2-0.2.2/RobinCar2/man/robin_surv.Rd | 23 RobinCar2-0.2.2/RobinCar2/man/robin_surv_comparison.Rd | 1 RobinCar2-0.2.2/RobinCar2/man/surv_effect_methods.Rd | 4 RobinCar2-0.2.2/RobinCar2/man/survival_comparison_functions.Rd | 22 RobinCar2-0.2.2/RobinCar2/man/survival_score_functions.Rd | 20 RobinCar2-0.2.2/RobinCar2/tests/others.R | 5 RobinCar2-0.2.2/RobinCar2/tests/testthat/_snaps/robin_glm.md | 22 RobinCar2-0.2.2/RobinCar2/tests/testthat/_snaps/robin_lm.md |only RobinCar2-0.2.2/RobinCar2/tests/testthat/_snaps/surv_effect.md | 99 +++ RobinCar2-0.2.2/RobinCar2/tests/testthat/_snaps/survival.md | 152 ++++ RobinCar2-0.2.2/RobinCar2/tests/testthat/_snaps/survival_cov_adj.md | 34 - RobinCar2-0.2.2/RobinCar2/tests/testthat/_snaps/survival_score.md | 34 - RobinCar2-0.2.2/RobinCar2/tests/testthat/test-bias.R | 83 ++ RobinCar2-0.2.2/RobinCar2/tests/testthat/test-robin_glm.R | 3 RobinCar2-0.2.2/RobinCar2/tests/testthat/test-robin_lm.R | 54 + RobinCar2-0.2.2/RobinCar2/tests/testthat/test-surv_effect.R | 63 +- RobinCar2-0.2.2/RobinCar2/tests/testthat/test-survival.R | 313 ++++++++-- RobinCar2-0.2.2/RobinCar2/tests/testthat/test-survival_cov_adj.R | 89 +- RobinCar2-0.2.2/RobinCar2/tests/testthat/test-utils.R | 100 ++- RobinCar2-0.2.2/RobinCar2/vignettes/intro.Rmd | 6 44 files changed, 1669 insertions(+), 455 deletions(-)
Title: A Wrapper for the 'Clockify' API
Description: A wrapper for the Clockify API <https://docs.clockify.me/>, making it possible to query, insert and update time keeping data.
Author: Andrew B. Collier [aut, cre]
Maintainer: Andrew B. Collier <andrew.b.collier@gmail.com>
Diff between clockify versions 0.1.6 dated 2024-06-03 and 0.1.7 dated 2026-01-09
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/clockify.R | 1 + 3 files changed, 7 insertions(+), 6 deletions(-)
Title: R Interface for Apache Sedona
Description: R interface for 'Apache Sedona' based on 'sparklyr'
(<https://sedona.apache.org>).
Author: Apache Sedona [aut, cre],
Jia Yu [ctb, cph],
Yitao Li [aut, cph] ,
The Apache Software Foundation [cph],
RStudio [cph]
Maintainer: Apache Sedona <private@sedona.apache.org>
Diff between apache.sedona versions 1.8.0 dated 2025-09-12 and 1.8.1 dated 2026-01-09
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/dependencies.R | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)