Title: Linear Trend Segmentation
Description: Performs the detection of linear trend changes for univariate time series
by implementing the bottom-up unbalanced wavelet transformation proposed by
H. Maeng and P. Fryzlewicz (2023). The estimated number and locations of the
change-points are returned with the piecewise-linear estimator for signal.
Author: Hyeyoung Maeng [aut, cre],
Piotr Fryzlewicz [aut]
Maintainer: Hyeyoung Maeng <hyeyoung.maeng@durham.ac.uk>
Diff between trendsegmentR versions 1.3.1 dated 2026-01-08 and 1.3.2 dated 2026-01-16
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/trendsegment.R | 7 +++++-- man/trendsegment.Rd | 4 ++-- 4 files changed, 13 insertions(+), 10 deletions(-)
Title: A Simulation Framework for Spatiotemporal Population Genetics
Description: A framework for simulating spatially explicit genomic data which
leverages real cartographic information for programmatic and visual encoding
of spatiotemporal population dynamics on real geographic landscapes. Population
genetic models are then automatically executed by the 'SLiM' software by Haller
et al. (2019) <doi:10.1093/molbev/msy228> behind the scenes, using a custom
built-in simulation 'SLiM' script. Additionally, fully abstract spatial models
not tied to a specific geographic location are supported, and users can also
simulate data from standard, non-spatial, random-mating models. These can be
simulated either with the 'SLiM' built-in back-end script, or using an efficient
coalescent population genetics simulator 'msprime' by Baumdicker et al. (2022)
<doi:10.1093/genetics/iyab229> with a custom-built 'Python' script bundled with the
R package. Simulated genomic data is saved in a tree-sequence format and can be
loaded, manipulated, and summarised using tree-sequen [...truncated...]
Author: Martin Petr [aut, cre]
Maintainer: Martin Petr <contact@bodkan.net>
Diff between slendr versions 1.3.0 dated 2025-11-11 and 1.4.0 dated 2026-01-16
slendr-1.3.0/slendr/inst/extdata/models/introgression/__pycache__/script.cpython-313.pyc |only slendr-1.4.0/slendr/DESCRIPTION | 6 slendr-1.4.0/slendr/MD5 | 155 ++++---- slendr-1.4.0/slendr/NEWS.md | 30 + slendr-1.4.0/slendr/R/extract_parameters.R | 2 slendr-1.4.0/slendr/R/interface.R | 43 ++ slendr-1.4.0/slendr/R/shiny.R | 12 slendr-1.4.0/slendr/R/slendr-package.R | 2 slendr-1.4.0/slendr/R/utils.R | 3 slendr-1.4.0/slendr/R/visualization.R | 4 slendr-1.4.0/slendr/R/zzz.R | 4 slendr-1.4.0/slendr/README.md | 183 ++++++---- slendr-1.4.0/slendr/build/vignette.rds |binary slendr-1.4.0/slendr/inst/doc/vignette-00-installation.Rmd | 2 slendr-1.4.0/slendr/inst/doc/vignette-00-installation.html | 4 slendr-1.4.0/slendr/inst/doc/vignette-01-tutorial.R | 8 slendr-1.4.0/slendr/inst/doc/vignette-01-tutorial.Rmd | 18 slendr-1.4.0/slendr/inst/doc/vignette-01-tutorial.html | 52 +- slendr-1.4.0/slendr/inst/doc/vignette-02-grid-model.R | 74 ++-- slendr-1.4.0/slendr/inst/doc/vignette-02-grid-model.Rmd | 74 ++-- slendr-1.4.0/slendr/inst/doc/vignette-02-grid-model.html | 92 ++--- slendr-1.4.0/slendr/inst/doc/vignette-03-interactions.Rmd | 2 slendr-1.4.0/slendr/inst/doc/vignette-03-interactions.html | 8 slendr-1.4.0/slendr/inst/doc/vignette-04-nonspatial-models.R | 6 slendr-1.4.0/slendr/inst/doc/vignette-04-nonspatial-models.Rmd | 10 slendr-1.4.0/slendr/inst/doc/vignette-04-nonspatial-models.html | 22 - slendr-1.4.0/slendr/inst/doc/vignette-05-tree-sequences.R | 2 slendr-1.4.0/slendr/inst/doc/vignette-05-tree-sequences.Rmd | 12 slendr-1.4.0/slendr/inst/doc/vignette-05-tree-sequences.html | 127 +++--- slendr-1.4.0/slendr/inst/doc/vignette-06-locations.R | 6 slendr-1.4.0/slendr/inst/doc/vignette-06-locations.Rmd | 8 slendr-1.4.0/slendr/inst/doc/vignette-06-locations.html | 10 slendr-1.4.0/slendr/inst/doc/vignette-07-engines.R | 2 slendr-1.4.0/slendr/inst/doc/vignette-07-engines.Rmd | 2 slendr-1.4.0/slendr/inst/doc/vignette-07-engines.html | 2 slendr-1.4.0/slendr/inst/doc/vignette-08-nonslendr-tskit.Rmd | 20 - slendr-1.4.0/slendr/inst/doc/vignette-08-nonslendr-tskit.html | 43 +- slendr-1.4.0/slendr/inst/doc/vignette-10-tracts.R | 4 slendr-1.4.0/slendr/inst/doc/vignette-10-tracts.Rmd | 4 slendr-1.4.0/slendr/inst/doc/vignette-10-tracts.html | 4 slendr-1.4.0/slendr/inst/doc/vignette-11-extensions.R | 10 slendr-1.4.0/slendr/inst/doc/vignette-11-extensions.Rmd | 22 - slendr-1.4.0/slendr/inst/doc/vignette-11-extensions.html | 24 - slendr-1.4.0/slendr/inst/extdata/models/introgression/__pycache__/script.cpython-312.pyc |only slendr-1.4.0/slendr/inst/extdata/models/introgression/checksums.tsv | 2 slendr-1.4.0/slendr/inst/extdata/models/introgression/geneflow.tsv | 2 slendr-1.4.0/slendr/inst/extdata/models/introgression/script.py | 6 slendr-1.4.0/slendr/inst/extdata/models/introgression/script.slim | 16 slendr-1.4.0/slendr/inst/extdata/models/introgression_msprime.trees |binary slendr-1.4.0/slendr/inst/extdata/models/introgression_slim.trees |binary slendr-1.4.0/slendr/inst/extdata/models/msprime.trees |binary slendr-1.4.0/slendr/inst/scripts/script.py | 2 slendr-1.4.0/slendr/inst/scripts/script.slim | 14 slendr-1.4.0/slendr/man/gene_flow.Rd | 23 + slendr-1.4.0/slendr/man/slendr.Rd | 2 slendr-1.4.0/slendr/tests/testthat/test-compilation.R | 6 slendr-1.4.0/slendr/tests/testthat/test-coordinate-conversions.R | 2 slendr-1.4.0/slendr/tests/testthat/test-deprecation.R |only slendr-1.4.0/slendr/tests/testthat/test-dynamics.R | 2 slendr-1.4.0/slendr/tests/testthat/test-future.R | 4 slendr-1.4.0/slendr/tests/testthat/test-geneflow.R | 70 +-- slendr-1.4.0/slendr/tests/testthat/test-geometrical-operations.R | 2 slendr-1.4.0/slendr/tests/testthat/test-msprime-geneflow.R | 2 slendr-1.4.0/slendr/tests/testthat/test-naturalearth.R | 2 slendr-1.4.0/slendr/tests/testthat/test-nonserialized.R | 2 slendr-1.4.0/slendr/tests/testthat/test-serialization.R | 10 slendr-1.4.0/slendr/tests/testthat/test-time-direction.R | 20 - slendr-1.4.0/slendr/tests/testthat/test-tspop.R | 8 slendr-1.4.0/slendr/tests/testthat/test-utililites.R | 2 slendr-1.4.0/slendr/vignettes/vignette-00-installation.Rmd | 2 slendr-1.4.0/slendr/vignettes/vignette-01-tutorial.Rmd | 18 slendr-1.4.0/slendr/vignettes/vignette-02-grid-model.Rmd | 74 ++-- slendr-1.4.0/slendr/vignettes/vignette-03-interactions.Rmd | 2 slendr-1.4.0/slendr/vignettes/vignette-04-nonspatial-models.Rmd | 10 slendr-1.4.0/slendr/vignettes/vignette-05-tree-sequences.Rmd | 12 slendr-1.4.0/slendr/vignettes/vignette-06-locations.Rmd | 8 slendr-1.4.0/slendr/vignettes/vignette-07-engines.Rmd | 2 slendr-1.4.0/slendr/vignettes/vignette-08-nonslendr-tskit.Rmd | 20 - slendr-1.4.0/slendr/vignettes/vignette-10-tracts.Rmd | 4 slendr-1.4.0/slendr/vignettes/vignette-11-extensions.Rmd | 22 - 80 files changed, 831 insertions(+), 660 deletions(-)
Title: Unified Parallel and Distributed Processing in R for Everyone
Description: The purpose of this package is to provide a lightweight and
unified Future API for sequential and parallel processing of R
expression via futures. The simplest way to evaluate an expression
in parallel is to use `x %<-% { expression }` with `plan(multisession)`.
This package implements sequential, multicore, multisession, and
cluster futures. With these, R expressions can be evaluated on the
local machine, in parallel a set of local machines, or distributed
on a mix of local and remote machines.
Extensions to this package implement additional backends for
processing futures via compute cluster schedulers, etc.
Because of its unified API, there is no need to modify any code in order
switch from sequential on the local machine to, say, distributed
processing on a remote compute cluster.
Another strength of this package is that global variables and functions
are automatically identified and exported as needed, making it
straightforward to tweak existing code to make use of futures.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future versions 1.68.0 dated 2025-11-17 and 1.69.0 dated 2026-01-16
DESCRIPTION | 14 MD5 | 280 ++++--- NAMESPACE | 2 NEWS.md | 65 + R/000.re-exports.R | 39 - R/009.deprecation.R |only R/backend_api-01-FutureBackend-class.R | 1 R/backend_api-03.MultiprocessFutureBackend-class.R | 9 R/backend_api-11.ClusterFutureBackend-class.R | 44 - R/backend_api-11.MulticoreFutureBackend-class.R | 25 R/backend_api-11.SequentialFutureBackend-class.R | 11 R/backend_api-Future-class.R | 342 ++++----- R/backend_api-FutureRegistry.R | 45 + R/backend_api-UniprocessFuture-class.R | 4 R/backend_api-evalFuture.R | 18 R/core_api-cancel.R | 3 R/core_api-future.R | 20 R/core_api-reset.R | 3 R/core_api-resolved.R | 64 + R/delayed_api-futureAssign.R | 4 R/protected_api-FutureCondition-class.R | 152 +++- R/protected_api-resolve.R | 2 R/protected_api-result.R |only R/utils-conditions.R | 4 R/utils-options.R | 8 R/utils-signalEarly.R | 29 R/utils_api-futureCall.R | 4 R/utils_api-makeClusterFuture.R | 13 R/utils_api-plan.R | 2 R/utils_api-tweak.R | 44 - inst/WORDLIST | 8 inst/doc/future-1-overview.html | 8 inst/doc/future-2-output.html | 8 inst/doc/future-2b-backend.html | 2 inst/doc/future-3-topologies.html | 8 inst/doc/future-4-issues.html | 8 inst/doc/future-4-non-exportable-objects.html | 8 inst/doc/future-5-startup.html | 8 inst/doc/future-6-future-api-backend-specification.html | 2 inst/doc/future-7-for-package-developers.html | 8 inst/doc/future-8-how-future-is-validated.html | 2 inst/testme/deploy.R | 2 inst/testme/run.R | 562 +++++++++------- inst/testme/test-cluster-missing-future-pkg.R | 1 inst/testme/test-early-signaling.R | 210 ++--- inst/testme/test-future.R | 20 inst/testme/test-makeClusterSequential.R |only inst/testme/test-plan.R | 29 inst/testme/test-rng.R | 28 inst/testme/test-tweak.R | 3 man/Future-class.Rd | 12 man/FutureBackend-class.Rd | 2 man/FutureCondition.Rd | 60 + man/future.Rd | 14 man/futureAssign.Rd | 12 man/makeClusterFuture.Rd | 3 man/re-exports.Rd | 9 man/resolved.Rd | 26 man/result.Rd | 2 tests/test-000.R | 1 tests/test-FutureError.R | 1 tests/test-FutureGlobals.R | 1 tests/test-FutureRegistry.R | 1 tests/test-adhoc_native_to_utf8.R | 1 tests/test-backtrace.R | 1 tests/test-bquote.R | 1 tests/test-cancel.R | 1 tests/test-capture_journals.R | 1 tests/test-cluster,worker-termination.R | 1 tests/test-cluster-connection-clashes.R | 1 tests/test-cluster-missing-future-pkg.R | 1 tests/test-demo-fibonacci.R | 1 tests/test-demo-mandelbrot.R | 1 tests/test-dotdotdot.R | 1 tests/test-early-signaling.R | 1 tests/test-error_on_warn_2.R | 1 tests/test-future,labels.R | 1 tests/test-future,optsenvvars.R | 1 tests/test-future.R | 1 tests/test-futureAssign.R | 1 tests/test-futureAssign_OP.R | 1 tests/test-futureAssign_OP_with_environment.R | 1 tests/test-futureAssign_OP_with_listenv.R | 1 tests/test-futureCall.R | 1 tests/test-futureOf.R | 1 tests/test-futureOf_with_environment.R | 1 tests/test-futureOf_with_listenv.R | 1 tests/test-futureSessionInfo.R | 1 tests/test-futures.R | 1 tests/test-globals,NSE.R | 1 tests/test-globals,S4methods.R | 1 tests/test-globals,formulas.R | 1 tests/test-globals,locals.R | 1 tests/test-globals,manual.R | 1 tests/test-globals,packages.R | 1 tests/test-globals,resolve.R | 1 tests/test-globals,subassignment.R | 1 tests/test-globals,toolarge.R | 1 tests/test-globals,tricky.R | 1 tests/test-globals,tricky2.R | 1 tests/test-globals,tricky_recursive.R | 1 tests/test-globalsOf,tweaks.R | 1 tests/test-immediateCondition.R | 1 tests/test-interrupts-from-worker-itself.R | 1 tests/test-invalid-owner.R | 1 tests/test-makeClusterFuture.R | 1 tests/test-makeClusterSequential.R |only tests/test-mandelbrot.R | 1 tests/test-misuse-connections.R | 1 tests/test-mpi.R | 1 tests/test-multicore,multithreading.R | 1 tests/test-multicore,worker-termination.R | 1 tests/test-multisession-libpaths.R | 1 tests/test-nbrOfWorkers.R | 1 tests/test-nested_futures,mc.cores.R | 1 tests/test-nested_futures.R | 1 tests/test-non-exportable,connections.R | 1 tests/test-objectSize.R | 1 tests/test-plan.R | 1 tests/test-relaying,muffle.R | 1 tests/test-relaying,split.R | 1 tests/test-relaying.R | 1 tests/test-requestCore.R | 1 tests/test-requestNode.R | 1 tests/test-reserved-keyword-functions.R | 1 tests/test-reset.R | 1 tests/test-resolve.R | 1 tests/test-resolved-non-blocking-test.R | 1 tests/test-rng.R | 1 tests/test-rng_utils.R | 1 tests/test-sequential.R | 1 tests/test-sessionDetails.R | 1 tests/test-startup-onAttach.R | 1 tests/test-startup-onLoad.R | 1 tests/test-startup-parseCmdArgs.R | 1 tests/test-stdout.R | 1 tests/test-timeouts.R | 1 tests/test-tweak.R | 1 tests/test-utils.R | 1 tests/test-uuid.R | 1 tests/test-value-error-cancels-set.R | 1 tests/test-value.R | 1 tests/test-whichIndex.R | 1 143 files changed, 1408 insertions(+), 991 deletions(-)
Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create
and manage project-local R libraries, save the state of these libraries to
a 'lockfile', and later restore your library as required. Together, these
tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre] ,
Hadley Wickham [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between renv versions 1.1.5 dated 2025-07-24 and 1.1.6 dated 2026-01-16
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Title: Doubly Robust Generalized Estimating Equations
Description: Estimates the conditional association between an exposure and an outcome given covariates. Three methods are implemented: O-estimation, where a nuisance model for the association between the covariates and the outcome is used; E-estimation where a nuisance model for the association between the covariates and the exposure is used, and doubly robust (DR) estimation where both nuisance models are used. In DR-estimation, the estimates will be consistent when at least one of the nuisance models is correctly specified, not necessarily both. For more information, see Zetterqvist and Sjölander (2015) <doi:10.1515/em-2014-0021>.
Author: Johan Zetterqvist [aut, cre],
Arvid Sjoelander [aut],
Alexander Ploner [ctb]
Maintainer: Johan Zetterqvist <drjohanzetterqvist@gmail.com>
Diff between drgee versions 1.1.10-3 dated 2025-05-07 and 1.1.10-4 dated 2026-01-16
DESCRIPTION | 10 +++--- MD5 | 6 +-- NEWS | 5 +++ src/drgee.cpp | 96 +++++++++++++++++++++++++++++----------------------------- 4 files changed, 61 insertions(+), 56 deletions(-)
Title: Tipping Point Analysis for Survival Endpoints
Description: Implements tipping point sensitivity analysis for time-to-event endpoints under different missing data scenarios, as described in Oodally et al. (2025) <doi:10.48550/arXiv.2506.19988>. Supports both model-based and model-free imputation, multiple imputation workflows, plausibility assessment and visualizations. Enables robust assessment for regulatory and exploratory analyses.
Author: Ajmal Oodally [cre, aut] ,
Craig Wang [aut] ,
Zheng Li [ctb]
Maintainer: Ajmal Oodally <ajmal.oodally@novartis.com>
Diff between tipse versions 1.1 dated 2025-12-19 and 1.2 dated 2026-01-16
tipse-1.1/tipse/README.md |only tipse-1.2/tipse/DESCRIPTION | 6 +-- tipse-1.2/tipse/MD5 | 37 +++++++++++------------ tipse-1.2/tipse/NAMESPACE | 1 tipse-1.2/tipse/NEWS.md | 9 ++++- tipse-1.2/tipse/R/fit_model.R | 4 +- tipse-1.2/tipse/R/impute_deterministic.R | 14 ++++++++ tipse-1.2/tipse/R/impute_model_based.R | 15 ++++++++- tipse-1.2/tipse/R/impute_random.R | 15 ++++++++- tipse-1.2/tipse/R/plot_tipse.R | 2 - tipse-1.2/tipse/R/pool_results.R | 17 ++++++---- tipse-1.2/tipse/R/tipping_point_model_based.R | 23 ++++++++++---- tipse-1.2/tipse/R/tipping_point_model_free.R | 27 +++++++++++----- tipse-1.2/tipse/inst/doc/analysis_examples.html | 16 ++++----- tipse-1.2/tipse/man/impute_model.Rd | 2 - tipse-1.2/tipse/man/impute_random.Rd | 2 - tipse-1.2/tipse/man/plot.tipse.Rd | 2 - tipse-1.2/tipse/man/pool_results.Rd | 2 - tipse-1.2/tipse/man/tipping_point_model_based.Rd | 8 ++-- tipse-1.2/tipse/man/tipping_point_model_free.Rd | 11 +++--- 20 files changed, 140 insertions(+), 73 deletions(-)
Title: Water Quality Assessment and Environmental Compliance in Brazil
Description: Tools to import, clean, validate, and analyze freshwater quality data in Brazil. Implements water quality indices including the Water Quality Index (WQI/IQA), the Trophic State Index (TSI/IET) after Carlson (1977) <doi:10.4319/lo.1977.22.2.0361> and Lamparelli (2004) <https://www.teses.usp.br/teses/disponiveis/41/41134/tde-20032006-075813/publico/TeseLamparelli2004.pdf>, and the National Sanitation Foundation Water Quality Index (NSF WQI) <doi:10.1007/s11157-023-09650-7>. The package also checks compliance with Brazilian standard CONAMA Resolution 357/2005 <https://conama.mma.gov.br/?id=450&option=com_sisconama&task=arquivo.download> and generates reproducible reports for routine monitoring workflows.
The example dataset (`wq_demo`) is now a real subset from monitoring data (BURANHEM river, 2020-2024, 4 points, 20 rows, 14 columns including extra `rio`, `lat`, `lon`). All core examples and vignettes use this realistic sample, improving reproducibility an [...truncated...]
Author: Vinicius Saraiva Santos [aut, cre]
Maintainer: Vinicius Saraiva Santos <vinisaraiva@gmail.com>
This is a re-admission after prior archival of version 0.8.0 dated 2025-11-17
Diff between tikatuwq versions 0.8.0 dated 2025-11-17 and 0.8.2 dated 2026-01-16
DESCRIPTION | 11 +++++---- MD5 | 24 ++++++++++---------- NAMESPACE | 10 -------- NEWS.md | 8 ++++++ R/param_analysis.R | 3 -- R/plot_map.R | 21 ++++++++++-------- R/report.R | 36 +++++++++++++++++++++++------- README.md | 19 +++++++++++++++- inst/CITATION | 4 +-- man/plot_map.Rd | 13 ++++++----- man/render_report.Rd | 11 +++++---- tests/testthat/test-plot_map.R | 5 +++- tests/testthat/test-render_report.R | 42 ++++++++++++++++++++++++++++++------ 13 files changed, 138 insertions(+), 69 deletions(-)
Title: Simplify Connections to Database Sources
Description: Connecting to databases requires boilerplate code to specify
connection parameters and to set up sessions properly with the DBMS.
This package provides a simple tool to fill two purposes: abstracting
connection details, including secret credentials, out of your source
code and managing configuration for frequently-used database connections
in a persistent and flexible way, while minimizing requirements on the
runtime environment.
Author: Charles Bailey [aut, cre],
Hanieh Razzaghi [aut]
Maintainer: Charles Bailey <baileyc@chop.edu>
Diff between srcr versions 1.1.1 dated 2024-05-12 and 1.1.2 dated 2026-01-16
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Title: Reproducible Data Science Environments with 'Nix'
Description: Simplifies the creation of reproducible data science environments
using the 'Nix' package manager, as described in
Dolstra (2006) <ISBN 90-393-4130-3>. The included `rix()`
function generates a complete description of the environment as a
`default.nix` file, which can then be built using 'Nix'. This results in
project specific software environments with pinned versions of R, packages,
linked system dependencies, and other tools or programming languages such
as Python or Julia. Additional helpers make it easy to run R code in
'Nix' software environments for testing and production.
Author: Bruno Rodrigues [aut, cre] ,
Philipp Baumann [aut] ,
David Watkins [rev] for
rOpenSci, see
<https://github.com/ropensci/software-review/issues/625>),
Jacob Wujiciak-Jens [rev] for rOpenSci, see
<https://github.com/ropensci/software-review/issues/62 [...truncated...]
Maintainer: Bruno Rodrigues <bruno@brodrigues.co>
Diff between rix versions 0.17.2 dated 2025-09-11 and 0.17.4 dated 2026-01-16
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Title: Tile Grid Maps for East Caucasian Languages
Description: Generates tile maps for the East Caucasian language family, inspired by the Typological Atlas of the Languages of Daghestan (TALD, <https://lingconlab.ru/tald/>). It leverages 'ggplot2' to create visually informative maps, displaying rectangles for each language and allowing for color-coding based on linguistic features. The package includes a built-in dataset of 56 languages and the template for their distribution and provides flexibility to customize the tile map's appearance. The default template can be modified via the ability to hide or rename languages. It's designed to be used with external data tables containing language information and features, offering a tool for visualizing the geographic distribution and linguistic characteristics of East Caucasian languages.
Author: George Moroz [aut, cre]
Maintainer: George Moroz <agricolamz@gmail.com>
Diff between RCaucTile versions 1.0.1 dated 2025-09-13 and 1.0.3 dated 2026-01-16
DESCRIPTION | 8 - MD5 | 10 +- NAMESPACE | 3 NEWS | 3 R/ec_tile_map.R | 239 ++++++++++++++++++++++++++++++++++++++++------------- man/ec_tile_map.Rd | 18 +++ 6 files changed, 212 insertions(+), 69 deletions(-)
Title: Read and Write 'GraphPad Prism' Files
Description: Read and write 'GraphPad Prism' '.pzfx' files in R.
Author: Yue Jiang [aut, cre] ,
David Micklem [ctb]
Maintainer: Yue Jiang <rivehill@gmail.com>
Diff between pzfx versions 0.3.0 dated 2020-07-05 and 0.3.1 dated 2026-01-16
DESCRIPTION | 15 - MD5 | 30 +- NAMESPACE | 1 NEWS.md | 7 R/read_pzfx.R | 2 R/read_subcol.R | 2 R/write_pzfx.R | 481 ++++++++++++++++++++++++--------------- README.md | 8 build/vignette.rds |binary inst/doc/pzfx.Rmd | 4 inst/doc/pzfx.html | 281 ++++++++++++++-------- inst/testdata/comma_decimal.pzfx |only inst/testdata/comma_decimal.tab |only man/write_pzfx.Rd | 46 ++- tests/testthat/test_read_pzfx.R | 8 tests/testthat/test_write_pzfx.R | 16 - vignettes/pzfx.Rmd | 4 17 files changed, 567 insertions(+), 338 deletions(-)
Title: Rock Mass Structural Analysis from 3D Mesh of Point Cloud
Description: Provides functions to extract joint planes from 3D triangular mesh derived
from point cloud and makes data available for structural analysis.
Author: Riccardo Campana [aut, cre],
Jeffrey R. Webber [ctb]
Maintainer: Riccardo Campana <riccarl@hotmail.it>
This is a re-admission after prior archival of version 1.0 dated 2022-03-28
Diff between JFM versions 1.0 dated 2022-03-28 and 1.0.1 dated 2026-01-16
DESCRIPTION | 10 ++-- MD5 | 22 ++++++---- NAMESPACE | 6 ++ R/JFM-package.R | 3 - R/funzioni.R | 68 +++++++++++++++++++++++++++++++++ R/plot_joint_great_circles.R | 8 +++ inst/extdata/point_cloud.ply |only inst/extdata/point_cloud_dp_0.5m2.txt |only inst/extdata/point_cloud_max_0.5m2.txt |only inst/extdata/point_cloud_max_gcm2.txt |only man/JFM-package.Rd | 2 src/Makevars | 2 src/Makevars.win | 2 src/wildfire_mesh.cpp | 3 - 14 files changed, 104 insertions(+), 22 deletions(-)
Title: Draw Network with Data
Description: Extends the 'ggplot2' plotting system to support network visualization. Inspired by the 'Method 1' in 'ggtree' (G Yu (2018) <doi:10.1093/molbev/msy194>), 'ggtangle' is designed to work with network associated data.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between ggtangle versions 0.1.0 dated 2026-01-07 and 0.1.1 dated 2026-01-16
DESCRIPTION | 9 MD5 | 19 - NAMESPACE | 122 ++++---- NEWS.md | 23 + R/AllGenerics.r | 8 R/cnet.r | 131 ++++++++- R/graph.r | 528 +++++++++++++++++++------------------- R/interactive.R |only inst/doc/ggtangle.html | 18 - man/cnetplot.Rd | 11 man/geom_edge_interactive.Rd |only man/geom_edge_text_interactive.Rd |only 12 files changed, 512 insertions(+), 357 deletions(-)
Title: An Interactive and Feature-Rich Data Viewer
Description: Provides an interactive viewer for 'data.frame' and 'tibble' objects using 'shiny' <https://shiny.posit.co/> and 'DT' <https://rstudio.github.io/DT/>. It supports complex filtering, column selection, and automatic generation of reproducible 'dplyr' <https://dplyr.tidyverse.org/> code for data manipulation. The package is designed for ease of use in data exploration and reporting workflows.
Author: Madhan Kumar N [aut, cre],
Siddhesh Pujari [aut],
Gomathi S [aut],
Mackenzie Haight [aut]
Maintainer: Madhan Kumar N <madhanmanoj1999@gmail.com>
Diff between dataviewR versions 1.0.0 dated 2026-01-10 and 1.0.1 dated 2026-01-16
DESCRIPTION | 6 +-- MD5 | 9 ++--- NEWS.md | 8 ++++ R/dataviewer.R | 65 ++++++++++++++++++++++++++++++------- R/dataviewer_tab_server.R | 2 - tests/testthat/test-smart_launch.R |only 6 files changed, 71 insertions(+), 19 deletions(-)
Title: Occurrence Data Cleaning
Description: Flags and checks occurrence data that are in Darwin Core
format. The package includes generic functions and data as well as
some that are specific to bees. This package is meant to build upon
and be complimentary to other excellent occurrence cleaning packages,
including 'bdc' and 'CoordinateCleaner'. This package uses datasets
from several sources and particularly from the Discover Life Website,
created by Ascher and Pickering (2020). For further information,
please see the original publication and package website. Publication
- Dorey et al. (2023) <doi:10.1101/2023.06.30.547152> and package
website - Dorey et al. (2023) <https://github.com/jbdorey/BeeBDC>.
Author: James B. Dorey [aut, cre, cph] ,
Robert L. O'Reilly [aut] ,
Silas Bossert [aut] ,
Erica E. Fischer [aut]
Maintainer: James B. Dorey <jbdorey@me.com>
Diff between BeeBDC versions 1.3.1 dated 2025-09-22 and 1.3.2 dated 2026-01-16
DESCRIPTION | 16 - MD5 | 77 +++---- NAMESPACE | 2 NEWS.md | 123 +++++------ R/BeeBDCQuery.R | 2 R/ChaoWrapper.R | 4 R/PaigeIntegrateR.R | 38 +-- R/USGS_formatter.R | 6 R/additionalData_readRs.R | 52 ++-- R/atlasDownloader.R | 2 R/aux_functions.R | 23 +- R/beesChecklist.R | 290 ++++++++++++++++++++++----- R/beesTaxonomy.R | 301 +++++++++++++++++++++++----- R/countryNameCleanR.R | 8 R/dataProvTables.R | 2 R/dateFindR.R | 380 +++++++++++++++++------------------- R/dupeSummary.R | 34 +-- R/ggRichnessWrapper.R | 9 R/iNEXTwrapper.R | 6 R/interactiveMapR.R | 49 ---- R/jbd_create_figures.R | 4 R/plotFlagSummary.R | 4 R/repoMerge.R | 4 R/richnessEstimateR.R | 2 R/richnessPrepR.R | 2 R/summaryMaps.R | 8 R/taxadbToBeeBDC.R | 2 R/taxoMergeR.R | 108 +++++----- README.md | 11 - man/BeeBDCQuery.Rd | 2 man/beesChecklist.Rd | 55 +++-- man/beesTaxonomy.Rd | 52 +++- man/fileFinder.Rd | 4 man/ggRichnessWrapper.Rd | 7 man/interactiveMapR.Rd | 2 man/pipe.Rd |only tests/testthat/test-BeeBDCQuery.R | 6 tests/testthat/test-beesChecklist.R | 51 +++- tests/testthat/test-beesTaxonomy.R | 40 +++ tests/testthat/test-dateFindR.R | 119 +++++------ 40 files changed, 1167 insertions(+), 740 deletions(-)
Title: Vector Helpers
Description: Defines new notions of prototype and size that are used to
provide tools for consistent and well-founded type-coercion and
size-recycling, and are in turn connected to ideas of type- and
size-stability useful for analysing function interfaces.
Author: Hadley Wickham [aut],
Lionel Henry [aut],
Davis Vaughan [aut, cre],
data.table team [cph] and
their contribution to R's order),
Posit Software, PBC [cph, fnd]
Maintainer: Davis Vaughan <davis@posit.co>
Diff between vctrs versions 0.6.5 dated 2023-12-01 and 0.7.0 dated 2026-01-16
vctrs-0.6.5/vctrs/R/partial-factor.R |only vctrs-0.6.5/vctrs/R/partial-frame.R |only vctrs-0.6.5/vctrs/R/partial.R |only vctrs-0.6.5/vctrs/man/new_partial.Rd |only vctrs-0.6.5/vctrs/man/partial_factor.Rd |only vctrs-0.6.5/vctrs/man/partial_frame.Rd |only vctrs-0.6.5/vctrs/man/unspecified.Rd |only vctrs-0.6.5/vctrs/src/altrep.h |only vctrs-0.6.5/vctrs/src/c-unchop.c |only vctrs-0.6.5/vctrs/src/c-unchop.h |only vctrs-0.6.5/vctrs/src/decl/arg-counter-decl.h |only vctrs-0.6.5/vctrs/src/decl/assert-decl.h |only vctrs-0.6.5/vctrs/src/decl/c-decl.h |only vctrs-0.6.5/vctrs/src/decl/c-unchop-decl.h |only vctrs-0.6.5/vctrs/src/order-truelength.c |only vctrs-0.6.5/vctrs/src/order-truelength.h |only vctrs-0.6.5/vctrs/src/owned.h |only vctrs-0.6.5/vctrs/src/rlang/altrep.h |only vctrs-0.6.5/vctrs/src/vctrs-core.c |only vctrs-0.6.5/vctrs/tests/testthat/_snaps/partial-factor.md |only vctrs-0.6.5/vctrs/tests/testthat/_snaps/partial-frame.md |only vctrs-0.6.5/vctrs/tests/testthat/test-partial-factor.R |only vctrs-0.6.5/vctrs/tests/testthat/test-partial-frame.R |only vctrs-0.7.0/vctrs/DESCRIPTION | 14 vctrs-0.7.0/vctrs/MD5 | 810 +-- vctrs-0.7.0/vctrs/NAMESPACE | 39 vctrs-0.7.0/vctrs/NEWS.md | 123 vctrs-0.7.0/vctrs/R/altrep-rle.R |only vctrs-0.7.0/vctrs/R/arith.R | 8 vctrs-0.7.0/vctrs/R/assert.R | 209 vctrs-0.7.0/vctrs/R/bind.R | 67 vctrs-0.7.0/vctrs/R/c.R | 74 vctrs-0.7.0/vctrs/R/case-when.R |only vctrs-0.7.0/vctrs/R/cast.R | 103 vctrs-0.7.0/vctrs/R/compare.R | 7 vctrs-0.7.0/vctrs/R/conditions.R | 408 + vctrs-0.7.0/vctrs/R/dictionary.R | 38 vctrs-0.7.0/vctrs/R/dim.R | 4 vctrs-0.7.0/vctrs/R/equal.R | 5 vctrs-0.7.0/vctrs/R/expand.R | 10 vctrs-0.7.0/vctrs/R/faq-developer.R | 1 vctrs-0.7.0/vctrs/R/faq.R | 1 vctrs-0.7.0/vctrs/R/fill.R | 10 vctrs-0.7.0/vctrs/R/group.R | 9 vctrs-0.7.0/vctrs/R/hash.R | 5 vctrs-0.7.0/vctrs/R/if-else.R |only vctrs-0.7.0/vctrs/R/import-standalone-obj-type.R | 78 vctrs-0.7.0/vctrs/R/import-standalone-types-check.R | 362 - 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vctrs-0.7.0/vctrs/src/size-common.h | 69 vctrs-0.7.0/vctrs/src/size.c | 125 vctrs-0.7.0/vctrs/src/size.h | 29 vctrs-0.7.0/vctrs/src/slice-array.c | 6 vctrs-0.7.0/vctrs/src/slice-assign-array.c | 760 ++- vctrs-0.7.0/vctrs/src/slice-assign.c | 1204 +++- vctrs-0.7.0/vctrs/src/slice-assign.h | 210 vctrs-0.7.0/vctrs/src/slice-chop.c | 78 vctrs-0.7.0/vctrs/src/slice-chop.h | 2 vctrs-0.7.0/vctrs/src/slice-interleave.c | 172 vctrs-0.7.0/vctrs/src/slice-interleave.h |only vctrs-0.7.0/vctrs/src/slice.c | 110 vctrs-0.7.0/vctrs/src/slice.h | 2 vctrs-0.7.0/vctrs/src/strides.h | 22 vctrs-0.7.0/vctrs/src/subscript.c | 46 vctrs-0.7.0/vctrs/src/translate.c | 22 vctrs-0.7.0/vctrs/src/translate.h | 63 vctrs-0.7.0/vctrs/src/type-data-frame.c | 197 vctrs-0.7.0/vctrs/src/type-data-frame.h | 25 vctrs-0.7.0/vctrs/src/type-date-time.c | 12 vctrs-0.7.0/vctrs/src/type-factor.c | 73 vctrs-0.7.0/vctrs/src/type-factor.h | 19 vctrs-0.7.0/vctrs/src/type-info.c | 124 vctrs-0.7.0/vctrs/src/type-info.h | 53 vctrs-0.7.0/vctrs/src/type-tibble.c | 42 vctrs-0.7.0/vctrs/src/type-tibble.h | 10 vctrs-0.7.0/vctrs/src/unspecified.c | 126 vctrs-0.7.0/vctrs/src/unspecified.h |only vctrs-0.7.0/vctrs/src/utils-dispatch.c | 10 vctrs-0.7.0/vctrs/src/utils-dispatch.h | 3 vctrs-0.7.0/vctrs/src/utils.c | 433 + vctrs-0.7.0/vctrs/src/utils.h | 78 vctrs-0.7.0/vctrs/src/vctrs-core.h | 108 vctrs-0.7.0/vctrs/src/vctrs.h | 59 vctrs-0.7.0/vctrs/src/vec-bool.h | 73 vctrs-0.7.0/vctrs/src/vec-int.h |only vctrs-0.7.0/vctrs/src/version.c | 2 vctrs-0.7.0/vctrs/tests/testthat/_snaps/assert.md | 263 + vctrs-0.7.0/vctrs/tests/testthat/_snaps/bind.md | 51 vctrs-0.7.0/vctrs/tests/testthat/_snaps/c.md | 54 vctrs-0.7.0/vctrs/tests/testthat/_snaps/case-when.md |only vctrs-0.7.0/vctrs/tests/testthat/_snaps/cast.md | 22 vctrs-0.7.0/vctrs/tests/testthat/_snaps/complete.md |only vctrs-0.7.0/vctrs/tests/testthat/_snaps/conditions.md | 6 vctrs-0.7.0/vctrs/tests/testthat/_snaps/empty.md |only vctrs-0.7.0/vctrs/tests/testthat/_snaps/equal.md | 15 vctrs-0.7.0/vctrs/tests/testthat/_snaps/error-call.md | 15 vctrs-0.7.0/vctrs/tests/testthat/_snaps/expand.md | 2 vctrs-0.7.0/vctrs/tests/testthat/_snaps/if-else.md |only vctrs-0.7.0/vctrs/tests/testthat/_snaps/list-combine.md |only vctrs-0.7.0/vctrs/tests/testthat/_snaps/list-of-transpose.md |only vctrs-0.7.0/vctrs/tests/testthat/_snaps/list-unchop.md |only vctrs-0.7.0/vctrs/tests/testthat/_snaps/names.md | 8 vctrs-0.7.0/vctrs/tests/testthat/_snaps/parallel.md |only vctrs-0.7.0/vctrs/tests/testthat/_snaps/rank.md | 27 vctrs-0.7.0/vctrs/tests/testthat/_snaps/recode.md |only vctrs-0.7.0/vctrs/tests/testthat/_snaps/recycle.md | 68 vctrs-0.7.0/vctrs/tests/testthat/_snaps/rep.md | 1 vctrs-0.7.0/vctrs/tests/testthat/_snaps/runs.md | 6 vctrs-0.7.0/vctrs/tests/testthat/_snaps/slice-assign.md | 142 vctrs-0.7.0/vctrs/tests/testthat/_snaps/slice-chop.md | 352 - vctrs-0.7.0/vctrs/tests/testthat/_snaps/slice-interleave.md | 142 vctrs-0.7.0/vctrs/tests/testthat/_snaps/slice.md | 10 vctrs-0.7.0/vctrs/tests/testthat/_snaps/type-idate.md |only vctrs-0.7.0/vctrs/tests/testthat/_snaps/type-list-of.md | 358 + vctrs-0.7.0/vctrs/tests/testthat/_snaps/type.md | 18 vctrs-0.7.0/vctrs/tests/testthat/_snaps/type2.md | 50 vctrs-0.7.0/vctrs/tests/testthat/helper-cast.R | 1 vctrs-0.7.0/vctrs/tests/testthat/helper-conditions.R | 21 vctrs-0.7.0/vctrs/tests/testthat/helper-encoding.R | 2 vctrs-0.7.0/vctrs/tests/testthat/helper-expectations.R | 26 vctrs-0.7.0/vctrs/tests/testthat/helper-if-else.R |only vctrs-0.7.0/vctrs/tests/testthat/helper-list-combine.R |only vctrs-0.7.0/vctrs/tests/testthat/helper-list-of-transpose.R |only vctrs-0.7.0/vctrs/tests/testthat/helper-order.R | 17 vctrs-0.7.0/vctrs/tests/testthat/helper-rational.R | 47 vctrs-0.7.0/vctrs/tests/testthat/helper-s3.R | 77 vctrs-0.7.0/vctrs/tests/testthat/helper-s4.R | 12 vctrs-0.7.0/vctrs/tests/testthat/helper-shape.R | 1 vctrs-0.7.0/vctrs/tests/testthat/helper-size.R | 1 vctrs-0.7.0/vctrs/tests/testthat/helper-type-dplyr.R | 1 vctrs-0.7.0/vctrs/tests/testthat/helper-vctrs.R | 38 vctrs-0.7.0/vctrs/tests/testthat/test-arith.R | 1 vctrs-0.7.0/vctrs/tests/testthat/test-assert.R | 279 + vctrs-0.7.0/vctrs/tests/testthat/test-bind.R | 274 - vctrs-0.7.0/vctrs/tests/testthat/test-c.R | 199 vctrs-0.7.0/vctrs/tests/testthat/test-case-when.R |only vctrs-0.7.0/vctrs/tests/testthat/test-cast.R | 115 vctrs-0.7.0/vctrs/tests/testthat/test-compare.R | 38 vctrs-0.7.0/vctrs/tests/testthat/test-complete.R | 60 vctrs-0.7.0/vctrs/tests/testthat/test-conditions.R | 100 vctrs-0.7.0/vctrs/tests/testthat/test-dictionary.R | 56 vctrs-0.7.0/vctrs/tests/testthat/test-dim.R | 1 vctrs-0.7.0/vctrs/tests/testthat/test-empty.R | 7 vctrs-0.7.0/vctrs/tests/testthat/test-equal.R | 142 vctrs-0.7.0/vctrs/tests/testthat/test-error-call.R | 24 vctrs-0.7.0/vctrs/tests/testthat/test-expand.R | 24 vctrs-0.7.0/vctrs/tests/testthat/test-fields.R | 2 vctrs-0.7.0/vctrs/tests/testthat/test-fill.R | 50 vctrs-0.7.0/vctrs/tests/testthat/test-group.R | 6 vctrs-0.7.0/vctrs/tests/testthat/test-hash.R | 32 vctrs-0.7.0/vctrs/tests/testthat/test-if-else.R |only vctrs-0.7.0/vctrs/tests/testthat/test-interval.R | 92 vctrs-0.7.0/vctrs/tests/testthat/test-lifecycle-deprecated.R | 1 vctrs-0.7.0/vctrs/tests/testthat/test-list-combine.R |only vctrs-0.7.0/vctrs/tests/testthat/test-list-of-transpose.R |only vctrs-0.7.0/vctrs/tests/testthat/test-list-unchop.R |only vctrs-0.7.0/vctrs/tests/testthat/test-match.R | 954 +++ vctrs-0.7.0/vctrs/tests/testthat/test-missing.R | 24 vctrs-0.7.0/vctrs/tests/testthat/test-names.R | 349 + vctrs-0.7.0/vctrs/tests/testthat/test-order.R | 865 ++- vctrs-0.7.0/vctrs/tests/testthat/test-parallel.R |only vctrs-0.7.0/vctrs/tests/testthat/test-print-str.R | 1 vctrs-0.7.0/vctrs/tests/testthat/test-proxy-restore.R | 34 vctrs-0.7.0/vctrs/tests/testthat/test-proxy.R | 9 vctrs-0.7.0/vctrs/tests/testthat/test-ptype-abbr-full.R | 17 vctrs-0.7.0/vctrs/tests/testthat/test-rank.R | 94 vctrs-0.7.0/vctrs/tests/testthat/test-recode.R |only vctrs-0.7.0/vctrs/tests/testthat/test-recycle.R | 119 vctrs-0.7.0/vctrs/tests/testthat/test-rep.R | 25 vctrs-0.7.0/vctrs/tests/testthat/test-runs.R | 47 vctrs-0.7.0/vctrs/tests/testthat/test-s4.R | 17 vctrs-0.7.0/vctrs/tests/testthat/test-set.R | 77 vctrs-0.7.0/vctrs/tests/testthat/test-shape.R | 65 vctrs-0.7.0/vctrs/tests/testthat/test-size.R | 21 vctrs-0.7.0/vctrs/tests/testthat/test-slice-assign.R | 1474 +++++ vctrs-0.7.0/vctrs/tests/testthat/test-slice-chop.R | 715 -- vctrs-0.7.0/vctrs/tests/testthat/test-slice-interleave.R | 114 vctrs-0.7.0/vctrs/tests/testthat/test-slice.R | 306 - vctrs-0.7.0/vctrs/tests/testthat/test-split.R | 13 vctrs-0.7.0/vctrs/tests/testthat/test-subscript-loc.R | 440 + vctrs-0.7.0/vctrs/tests/testthat/test-subscript.R | 53 vctrs-0.7.0/vctrs/tests/testthat/test-translate.R | 19 vctrs-0.7.0/vctrs/tests/testthat/test-type-asis.R | 15 vctrs-0.7.0/vctrs/tests/testthat/test-type-bare.R | 249 vctrs-0.7.0/vctrs/tests/testthat/test-type-data-frame.R | 92 vctrs-0.7.0/vctrs/tests/testthat/test-type-date-time.R | 223 vctrs-0.7.0/vctrs/tests/testthat/test-type-dplyr.R | 6 vctrs-0.7.0/vctrs/tests/testthat/test-type-factor.R | 46 vctrs-0.7.0/vctrs/tests/testthat/test-type-idate.R |only vctrs-0.7.0/vctrs/tests/testthat/test-type-integer64.R | 41 vctrs-0.7.0/vctrs/tests/testthat/test-type-list-of.R | 757 ++- vctrs-0.7.0/vctrs/tests/testthat/test-type-misc.R | 71 vctrs-0.7.0/vctrs/tests/testthat/test-type-rational.R | 1 vctrs-0.7.0/vctrs/tests/testthat/test-type-rcrd.R | 42 vctrs-0.7.0/vctrs/tests/testthat/test-type-sclr.R | 1 vctrs-0.7.0/vctrs/tests/testthat/test-type-sf.R | 341 - vctrs-0.7.0/vctrs/tests/testthat/test-type-table.R | 104 vctrs-0.7.0/vctrs/tests/testthat/test-type-tibble.R | 5 vctrs-0.7.0/vctrs/tests/testthat/test-type-unspecified.R | 36 vctrs-0.7.0/vctrs/tests/testthat/test-type-vctr.R | 124 vctrs-0.7.0/vctrs/tests/testthat/test-type.R | 172 vctrs-0.7.0/vctrs/tests/testthat/test-type2.R | 160 vctrs-0.7.0/vctrs/tests/testthat/test-utils.R | 5 vctrs-0.7.0/vctrs/tests/testthat/test-vctrs.R | 1 vctrs-0.7.0/vctrs/vignettes/s3-vector.Rmd | 2 450 files changed, 21936 insertions(+), 11799 deletions(-)
Title: Wrapper for 'run_examples()'
Description: Captures errors encountered when running 'run_examples()', and processes and archives them. The function 'run_examples()' within the 'devtools' package allows batch execution of all of the examples within a given package. This is much more convenient than testing each example manually. However, a major inconvenience is that if an error is encountered, the program stops and does not complete testing the remaining examples. Also, there is not a systematic record of the results, namely which package functions had no examples, which had examples that failed, and which had examples that succeeded. The current package provides the missing functionality.
Author: Barry Zeeberg [aut, cre]
Maintainer: Barry Zeeberg <barryz2013@gmail.com>
Diff between runExamplesWrapper versions 1.0 dated 2025-02-21 and 1.1 dated 2026-01-16
runExamplesWrapper-1.0/runExamplesWrapper/inst/doc/retrieveFunctions.Rmd |only runExamplesWrapper-1.0/runExamplesWrapper/inst/doc/retrieveFunctions.html |only runExamplesWrapper-1.0/runExamplesWrapper/vignettes/retrieveFunctions.Rmd |only runExamplesWrapper-1.1/runExamplesWrapper/DESCRIPTION | 10 ++++---- runExamplesWrapper-1.1/runExamplesWrapper/MD5 | 12 +++++----- runExamplesWrapper-1.1/runExamplesWrapper/R/runExamplesWrapper.R | 3 +- runExamplesWrapper-1.1/runExamplesWrapper/build/vignette.rds |binary runExamplesWrapper-1.1/runExamplesWrapper/inst/doc/runExamplesWrapper.Rmd |only runExamplesWrapper-1.1/runExamplesWrapper/inst/doc/runExamplesWrapper.html |only runExamplesWrapper-1.1/runExamplesWrapper/vignettes/runExamplesWrapper.Rmd |only 10 files changed, 13 insertions(+), 12 deletions(-)
More information about runExamplesWrapper at CRAN
Permanent link
Title: Robust Functional Analysis of Variance
Description: Implements the robust functional analysis of variance (RoFANOVA), described in Centofanti et al. (2023) <doi:10.1093/jrsssc/qlad074>.
It allows testing mean differences among groups of functional data by being robust against the presence of outliers.
Author: Fabio Centofanti [cre, aut]
Maintainer: Fabio Centofanti <fabio.centofanti@kuleuven.be>
This is a re-admission after prior archival of version 1.0.0 dated 2022-01-21
Diff between rofanova versions 1.0.0 dated 2022-01-21 and 1.0.1 dated 2026-01-16
rofanova-1.0.0/rofanova/R/utils.R |only rofanova-1.0.1/rofanova/DESCRIPTION | 37 +-- rofanova-1.0.1/rofanova/MD5 | 25 +- rofanova-1.0.1/rofanova/R/Utils.R |only rofanova-1.0.1/rofanova/R/functions.R | 31 +-- rofanova-1.0.1/rofanova/R/rofanova-package.R | 9 rofanova-1.0.1/rofanova/README.md | 35 ++- rofanova-1.0.1/rofanova/build |only rofanova-1.0.1/rofanova/inst |only rofanova-1.0.1/rofanova/man/funmad.Rd | 69 +++---- rofanova-1.0.1/rofanova/man/fusem.Rd | 128 ++++++------- rofanova-1.0.1/rofanova/man/rofanova-package.Rd | 97 ++++------ rofanova-1.0.1/rofanova/man/rofanova.Rd | 230 ++++++++++++------------ rofanova-1.0.1/rofanova/man/simulate_data.Rd | 176 +++++++++--------- rofanova-1.0.1/rofanova/src/Makevars | 1 rofanova-1.0.1/rofanova/tests/spelling.R |only 16 files changed, 418 insertions(+), 420 deletions(-)
Title: R Shiny Application for Latent Structure Analysis with a
Graphical User Interface
Description: Provides an interactive Shiny-based toolkit for conducting latent structure analyses, including Latent Profile Analysis (LPA), Latent Class Analysis (LCA), Latent Trait Analysis (LTA/IRT), Exploratory Factor Analysis (EFA), Confirmatory Factor Analysis (CFA), and Structural Equation Modeling (SEM). The implementation is grounded in established methodological frameworks: LPA is supported through 'tidyLPA' (Rosenberg et al., 2018) <doi:10.21105/joss.00978>, LCA through 'poLCA' (Linzer & Lewis, 2011) <doi:10.32614/CRAN.package.poLCA> & 'glca' (Kim & Kim, 2024) <doi:10.32614/CRAN.package.glca>, LTA/IRT via 'mirt' (Chalmers, 2012) <doi:10.18637/jss.v048.i06>, and EFA via 'psych' (Revelle, 2025). SEM and CFA functionalities build upon the 'lavaan' framework (Rosseel, 2012) <doi:10.18637/jss.v048.i02>. Users can upload datasets or use built-in examples, fit models, compare fit indices, visualize results, and export outputs without programming.
Author: Hasan Djidu [aut, cre] ,
Heri Retnawati [ctb] ,
Samsul Hadi [ctb] ,
Haryanto [ctb]
Maintainer: Hasan Djidu <hasandjidu@gmail.com>
Diff between projectLSA versions 0.0.5 dated 2026-01-08 and 0.0.6 dated 2026-01-16
DESCRIPTION | 17 MD5 | 26 - NEWS.md | 8 inst/app/app.R | 3 inst/app/homepage_ui.R | 14 inst/app/lca_ui.R | 115 +++- inst/app/lpa_ui.R | 131 +++-- inst/app/serverCFA.R | 25 - inst/app/serverEFA.R | 22 inst/app/serverLCA.R | 1169 +++++++++++++++++++++++++++++++++++++++++-------- inst/app/serverLPA.R | 802 +++++++++++++++++++++++++++------ inst/app/serverLTA.R | 17 inst/app/simDataDesc.R | 92 +++ inst/app/styleCSS.R | 55 -- 14 files changed, 2037 insertions(+), 459 deletions(-)
Title: General Equilibrium Modeling
Description: Some tools for developing general equilibrium models and some general equilibrium models. These models can be used for teaching economic theory and are built by the methods of new structural economics (see LI Wu, 2019, ISBN: 9787521804225, General Equilibrium and Structural Dynamics: Perspectives of New Structural Economics. Beijing: Economic Science Press). The model form and mathematical methods can be traced back to J. von Neumann (1945, A Model of General Economic Equilibrium. The Review of Economic Studies, 13. pp. 1-9), J. G. Kemeny, O. Morgenstern and G. L. Thompson (1956, A Generalization of the von Neumann Model of an Expanding Economy, Econometrica, 24, pp. 115-135) et al. By the way, J. G. Kemeny is a co-inventor of the computer language BASIC.
Author: Wu LI [aut, cre]
Maintainer: Wu LI <liwu.shu@qq.com>
Diff between GE versions 0.5.3 dated 2025-11-27 and 0.5.4 dated 2026-01-16
GE-0.5.3/GE/R/gemInstantaneousEquilibriumPath_StickyDecisions.R |only GE-0.5.3/GE/R/gemOLG_StochasticInstantaneousEquilibrium_3_3.R |only GE-0.5.4/GE/DESCRIPTION | 6 +- GE-0.5.4/GE/MD5 | 22 +++++----- GE-0.5.4/GE/NAMESPACE | 1 GE-0.5.4/GE/R/gemIntertemporal_Bank_1_2.R | 4 - GE-0.5.4/GE/R/gemIntertemporal_ExhaustibleResources_3_2.R |only GE-0.5.4/GE/R/gemIntertemporal_TimeCircle_Bank_1_2.R | 2 GE-0.5.4/GE/R/gemOLG_StochasticSpotEquilibrium_3_3.R |only GE-0.5.4/GE/R/gemSpotEquilibriumPath_StickyDecisions.R |only GE-0.5.4/GE/man/gemIntertemporal_Bank_1_2.Rd | 4 - GE-0.5.4/GE/man/gemIntertemporal_ExhaustibleResources_3_2.Rd |only GE-0.5.4/GE/man/gemIntertemporal_TimeCircle_Bank_1_2.Rd | 2 GE-0.5.4/GE/man/gemOLG_StochasticSpotEquilibrium_3_3.Rd | 4 - GE-0.5.4/GE/man/gemSpotEquilibriumPath_StickyDecisions.Rd | 3 - 15 files changed, 25 insertions(+), 23 deletions(-)
More information about EmpiricalDynamics at CRAN
Permanent link
Title: Utilities for Interacting with the 'Posit Connect' Server API
Description: Provides a helpful 'R6' class and methods for interacting with
the 'Posit Connect' Server API along with some meaningful utility functions
for regular tasks. API documentation varies by 'Posit Connect' installation
and version, but the latest documentation is also hosted publicly at
<https://docs.posit.co/connect/api/>.
Author: Kara Woo [aut, cre],
Toph Allen [aut],
Neal Richardson [aut],
Sean Lopp [aut],
Cole Arendt [aut],
Posit, PBC [cph, fnd]
Maintainer: Kara Woo <kara.woo@posit.co>
Diff between connectapi versions 0.9.0 dated 2025-10-30 and 0.10.0 dated 2026-01-16
connectapi-0.10.0/connectapi/DESCRIPTION | 17 - connectapi-0.10.0/connectapi/MD5 | 158 ++++------ connectapi-0.10.0/connectapi/NAMESPACE | 2 connectapi-0.10.0/connectapi/NEWS.md | 14 connectapi-0.10.0/connectapi/R/connect.R | 18 - connectapi-0.10.0/connectapi/R/content.R | 38 -- connectapi-0.10.0/connectapi/R/deploy.R | 29 - connectapi-0.10.0/connectapi/R/ptype.R | 22 - connectapi-0.10.0/connectapi/R/variant.R | 9 connectapi-0.10.0/connectapi/build/vignette.rds |binary connectapi-0.10.0/connectapi/inst/doc/customize-http.html | 4 connectapi-0.10.0/connectapi/inst/doc/getting-started.html | 4 connectapi-0.10.0/connectapi/man/Content.Rd | 18 - connectapi-0.10.0/connectapi/man/ContentTask.Rd | 1 connectapi-0.10.0/connectapi/man/EnvironmentR6.Rd | 1 connectapi-0.10.0/connectapi/man/PositConnect.Rd | 5 connectapi-0.10.0/connectapi/man/Vanity.Rd | 1 connectapi-0.10.0/connectapi/man/VariantR6.Rd | 18 - connectapi-0.10.0/connectapi/man/VariantSchedule.Rd | 1 connectapi-0.10.0/connectapi/man/VariantTask.Rd | 1 connectapi-0.10.0/connectapi/man/connect.Rd | 10 connectapi-0.10.0/connectapi/man/connectapi-package.Rd | 3 connectapi-0.10.0/connectapi/man/content_delete.Rd | 2 connectapi-0.10.0/connectapi/man/content_item.Rd | 2 connectapi-0.10.0/connectapi/man/content_title.Rd | 2 connectapi-0.10.0/connectapi/man/content_update.Rd | 2 connectapi-0.10.0/connectapi/man/create_random_name.Rd | 2 connectapi-0.10.0/connectapi/man/dashboard_url.Rd | 2 connectapi-0.10.0/connectapi/man/delete_thumbnail.Rd | 2 connectapi-0.10.0/connectapi/man/delete_vanity_url.Rd | 2 connectapi-0.10.0/connectapi/man/deploy.Rd | 2 connectapi-0.10.0/connectapi/man/deploy_repo.Rd | 2 connectapi-0.10.0/connectapi/man/environment.Rd | 2 connectapi-0.10.0/connectapi/man/get_associations.Rd | 2 connectapi-0.10.0/connectapi/man/get_bundles.Rd | 4 connectapi-0.10.0/connectapi/man/get_image.Rd | 2 connectapi-0.10.0/connectapi/man/get_jobs.Rd | 3 connectapi-0.10.0/connectapi/man/get_log.Rd | 3 connectapi-0.10.0/connectapi/man/get_thumbnail.Rd | 2 connectapi-0.10.0/connectapi/man/get_vanity_url.Rd | 2 connectapi-0.10.0/connectapi/man/git.Rd | 2 connectapi-0.10.0/connectapi/man/has_thumbnail.Rd | 2 connectapi-0.10.0/connectapi/man/lock_content.Rd | 2 connectapi-0.10.0/connectapi/man/permissions.Rd | 2 connectapi-0.10.0/connectapi/man/search_content.Rd | 2 connectapi-0.10.0/connectapi/man/set_image.Rd | 2 connectapi-0.10.0/connectapi/man/set_integrations.Rd | 2 connectapi-0.10.0/connectapi/man/set_run_as.Rd | 2 connectapi-0.10.0/connectapi/man/set_thumbnail.Rd | 2 connectapi-0.10.0/connectapi/man/set_vanity_url.Rd | 2 connectapi-0.10.0/connectapi/man/swap_vanity_urls.Rd | 2 connectapi-0.10.0/connectapi/man/terminate_jobs.Rd | 3 connectapi-0.10.0/connectapi/man/verify_content_name.Rd | 2 connectapi-0.10.0/connectapi/tests/integrated/helper.R | 3 connectapi-0.10.0/connectapi/tests/integrated/setup.R | 2 connectapi-0.10.0/connectapi/tests/integrated/test-connect.R | 72 ---- connectapi-0.10.0/connectapi/tests/integrated/test-content.R | 52 +-- connectapi-0.10.0/connectapi/tests/integrated/test-deploy.R | 67 ++-- connectapi-0.10.0/connectapi/tests/integrated/test-deployment.R | 49 +-- connectapi-0.10.0/connectapi/tests/integrated/test-env-vars.R | 4 connectapi-0.10.0/connectapi/tests/integrated/test-get.R | 32 +- connectapi-0.10.0/connectapi/tests/integrated/test-git.R | 28 - connectapi-0.10.0/connectapi/tests/integrated/test-groups.R | 16 - connectapi-0.10.0/connectapi/tests/integrated/test-lazy.R | 20 - connectapi-0.10.0/connectapi/tests/integrated/test-misc.R | 8 connectapi-0.10.0/connectapi/tests/integrated/test-run-as.R | 4 connectapi-0.10.0/connectapi/tests/integrated/test-schedule.R | 8 connectapi-0.10.0/connectapi/tests/integrated/test-tags.R | 78 ++-- connectapi-0.10.0/connectapi/tests/integrated/test-users.R | 18 - connectapi-0.10.0/connectapi/tests/integrated/test-variant.R | 9 connectapi-0.10.0/connectapi/tests/test-integrated.R | 2 connectapi-0.10.0/connectapi/tests/testthat/test-connect.R | 70 ++++ connectapi-0.10.0/connectapi/tests/testthat/test-parse.R | 31 - connectapi-0.10.0/connectapi/tests/testthat/test-utils.R | 1 connectapi-0.10.0/connectapi/vignettes/articles/connectapi_tags.Rmd | 2 connectapi-0.10.0/connectapi/vignettes/articles/content_permissions.Rmd | 2 connectapi-0.9.0/connectapi/inst/scratch |only connectapi-0.9.0/connectapi/man/get_job.Rd |only connectapi-0.9.0/connectapi/man/swap_vanity_url.Rd |only connectapi-0.9.0/connectapi/tests/testthat/Rplots.pdf |only 80 files changed, 396 insertions(+), 623 deletions(-)
Title: Access 'BCRPDATA' API
Description: Search and access more than ten thousand datasets included in 'BCRPDATA' (see <https://estadisticas.bcrp.gob.pe/estadisticas/series/ayuda/bcrpdata> for more information).
Author: Julio Collazos [aut, cre]
Maintainer: Julio Collazos <amarullazo626@gmail.com>
This is a re-admission after prior archival of version 1.0.1 dated 2025-07-22
Diff between bcRP versions 1.0.1 dated 2025-07-22 and 1.0.2 dated 2026-01-16
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/get_bcrp_data.R | 19 +++++++++++++++---- R/get_bcrp_metadata.R | 39 +++++++++++++++++++++++++-------------- R/utils.R | 7 ++++++- README.md | 8 +++++++- 6 files changed, 61 insertions(+), 28 deletions(-)
Title: ADaM in R Asset Library - Ophthalmology
Description: Aids the programming of Clinical Data Standards Interchange
Consortium (CDISC) compliant Ophthalmology Analysis Data Model (ADaM)
datasets in R. ADaM datasets are a mandatory part of any New Drug or
Biologics License Application submitted to the United States Food and
Drug Administration (FDA). Analysis derivations are implemented in
accordance with the "Analysis Data Model Implementation Guide" (CDISC
Analysis Data Model Team, 2021,
<https://www.cdisc.org/standards/foundational/adam/adamig-v1-3-release-package>).
Author: Edoardo Mancini [aut, cre] ,
Ritika Aggarwal [aut],
Jane Gao [aut],
William Holmes [aut],
Josie Jackson [aut],
Sonali Jain [aut],
Yuki Matsunaga [aut],
Gordon Miller [aut],
Rachel Linacre [aut],
Lucy Palmen [aut],
Nandini R Thampi [aut],
Aldrich Salv [...truncated...]
Maintainer: Edoardo Mancini <edoardo.mancini@roche.com>
Diff between admiralophtha versions 1.3.0 dated 2025-07-04 and 1.4.0 dated 2026-01-16
DESCRIPTION | 21 MD5 | 81 - NAMESPACE | 1 NEWS.md | 46 R/admiralophtha-package.R | 2 R/convert_etdrs_to_logmar.R | 9 R/convert_logmar_to_etdrs.R | 9 R/data.R | 2 R/derive_var_afeye.R | 19 R/derive_var_bcvacritxfl.R | 67 - R/derive_var_studyeye.R | 11 README.md | 19 build/vignette.rds |binary data/admiralophtha_advfq.rda |binary inst/WORDLIST | 10 inst/doc/adbcva.html | 52 inst/doc/admiralophtha.Rmd | 52 inst/doc/admiralophtha.html | 57 - inst/doc/adoe.Rmd | 4 inst/doc/adoe.html | 35 inst/doc/advfq.R | 583 ++++++++-- inst/doc/advfq.Rmd | 648 +++++++++-- inst/doc/advfq.html | 1437 ++++++++++++++++++++++---- inst/templates/ad_advfq.R | 581 ++++++---- man/admiralophtha-package.Rd | 6 man/admiralophtha_advfq.Rd | 4 man/convert_etdrs_to_logmar.Rd | 13 man/convert_logmar_to_etdrs.Rd | 13 man/derive_var_afeye.Rd | 29 man/derive_var_bcvacritxfl.Rd | 65 - man/derive_var_bcvacritxfl_util.Rd | 73 + man/derive_var_studyeye.Rd | 23 man/figures/admiralophtha-package.Rd |only man/figures/novartis_logo.png |only man/figures/roche_logo.png |only man/roxygen |only tests/testthat.R | 14 tests/testthat/_snaps |only tests/testthat/test-convert_etdrs_to_logmar.R | 2 tests/testthat/test-convert_logmar_to_etdrs.R | 2 tests/testthat/test-derive_var_bcvacritxfl.R | 70 - vignettes/admiralophtha.Rmd | 52 vignettes/adoe.Rmd | 4 vignettes/advfq.Rmd | 648 +++++++++-- 44 files changed, 3649 insertions(+), 1115 deletions(-)
Title: Design-Based Inference in Vector Generalised Linear Models
Description: Provides inference based on the survey package for the wide range of parametric models in the 'VGAM' package.
Author: Thomas Lumley [aut, cre]
Maintainer: Thomas Lumley <t.lumley@auckland.ac.nz>
Diff between svyVGAM versions 1.2-17 dated 2025-09-10 and 1.3 dated 2026-01-16
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NAMESPACE | 1 + R/svgam.R | 8 ++++++++ build/vignette.rds |binary inst/doc/theory.html | 4 ++-- inst/doc/zeroinfl.html | 8 +++----- man/svy_vglm.Rd | 7 ++++--- 8 files changed, 28 insertions(+), 20 deletions(-)
Title: Safely Access the RStudio API
Description: Access the RStudio API (if available) and provide informative error
messages when it's not.
Author: Kevin Ushey [aut, cre],
JJ Allaire [aut],
Hadley Wickham [aut],
Gary Ritchie [aut],
RStudio [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between rstudioapi versions 0.17.1 dated 2024-10-22 and 0.18.0 dated 2026-01-16
DESCRIPTION | 11 MD5 | 59 ++- NAMESPACE | 5 NEWS.md | 19 + R/auth.R | 545 +++++++++++++++++++++++++++++++++++- R/bug-report.R | 1 R/code.R | 6 R/document-api.R | 13 R/launcher-functions.R | 5 R/utils.R | 35 ++ build/vignette.rds |binary inst/doc/dialogs.R | 42 +- inst/doc/dialogs.html | 5 inst/doc/document-manipulation.R | 60 +-- inst/doc/document-manipulation.html | 5 inst/doc/projects.R | 16 - inst/doc/projects.html | 5 inst/doc/r-session.R | 60 +-- inst/doc/r-session.Rmd | 2 inst/doc/r-session.html | 9 inst/doc/terminal.R | 70 ++-- inst/doc/terminal.html | 5 inst/doc/visual-mode.R | 12 inst/doc/visual-mode.html | 5 man/findOAuthIntegration.Rd |only man/getDelegatedAzureToken.Rd | 3 man/getIdentityToken.Rd |only man/getOAuthCredentials.Rd |only man/getOAuthIntegration.Rd |only man/getOAuthIntegrations.Rd |only man/launcherSubmitJob.Rd | 4 man/rstudio-documents.Rd | 5 vignettes/r-session.Rmd | 2 33 files changed, 817 insertions(+), 192 deletions(-)
Title: Read, Write and Edit 'xlsx' Files
Description: Simplifies the creation of 'xlsx' files by
providing a high level interface to writing, styling and editing
worksheets.
Author: Jordan Mark Barbone [aut] ,
Jan Marvin Garbuszus [aut, cre],
Olivier Roy [ctb],
openxlsx authors [cph] ,
Arseny Kapoulkine [ctb, cph]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>
Diff between openxlsx2 versions 1.22 dated 2025-12-07 and 1.23 dated 2026-01-16
DESCRIPTION | 6 LICENSE | 2 MD5 | 197 ++--- NAMESPACE | 2 NEWS.md | 32 R/baseXML.R | 82 ++ R/class-comment.R | 2 R/class-style_mgr.R | 235 +++--- R/class-workbook-utils.R | 56 - R/class-workbook-wrappers.R | 57 + R/class-workbook.R | 881 ++++++++------------------ R/class-worksheet.R | 86 -- R/conditional_formatting.R | 17 R/converters.R | 43 + R/dates.R | 7 R/deprecate.R | 4 R/helper-functions.R | 10 R/illegal-characters.R | 25 R/openxlsx2-package.R | 2 R/pivot_table.R | 29 R/read.R | 100 ++ R/utils.R | 283 ++++---- R/wb_functions.R | 24 R/wb_load.R | 7 R/wb_styles.R | 648 ++++++++++++++++++- R/write.R | 72 -- R/write_xlsx.R | 39 - inst/AUTHORS | 1 inst/WORDLIST | 7 inst/doc/openxlsx2_read_to_df.R | 2 inst/doc/openxlsx2_read_to_df.Rmd | 6 inst/doc/openxlsx2_read_to_df.html | 9 inst/doc/openxlsx2_style_manual.R | 2 inst/doc/openxlsx2_style_manual.Rmd | 4 inst/doc/openxlsx2_style_manual.html | 4 man/apply_numfmt.Rd |only man/col_widths-wb.Rd | 24 man/create_comment.Rd | 2 man/dims_helper.Rd | 3 man/openxlsx2_options.Rd | 2 man/wbWorkbook.Rd | 23 man/wb_add_border.Rd | 1 man/wb_add_conditional_formatting.Rd | 7 man/wb_add_data.Rd | 9 man/wb_add_data_table.Rd | 9 man/wb_add_fill.Rd | 1 man/wb_add_font.Rd | 1 man/wb_add_numfmt.Rd | 1 man/wb_comment.Rd | 2 man/wb_load.Rd | 4 man/wb_to_df.Rd | 25 man/write_data.Rd | 6 man/write_datatable.Rd | 9 man/write_xlsx.Rd | 4 src/date.cpp | 6 src/helper_functions.cpp | 217 ++---- src/load_workbook.cpp | 78 +- src/openxlsx2.h | 68 +- src/openxlsx2_types.h | 12 src/strings_xml.cpp | 2 src/styles_xml.cpp | 84 -- src/write_file.cpp | 78 +- src/xlsb_funs.h | 6 tests/testthat/test-Workbook_properties.R | 2 tests/testthat/test-class-comment.R | 10 tests/testthat/test-class-workbook-wrappers.R | 4 tests/testthat/test-class-workbook.R | 211 ++++++ tests/testthat/test-class-worksheet.R | 4 tests/testthat/test-cloneWorksheet.R | 6 tests/testthat/test-conditional_formatting.R | 365 +++++++++- tests/testthat/test-converters.R | 10 tests/testthat/test-date_time_conversion.R | 7 tests/testthat/test-deleting_tables.R | 8 tests/testthat/test-fill_merged_cells.R | 4 tests/testthat/test-form_control.R | 1 tests/testthat/test-formulas.R | 6 tests/testthat/test-freeze_pane.R | 2 tests/testthat/test-helper-functions.R | 53 + tests/testthat/test-loading_workbook.R | 54 + tests/testthat/test-named_regions.R | 16 tests/testthat/test-names.R | 1 tests/testthat/test-options.R | 36 + tests/testthat/test-page_setup.R | 1 tests/testthat/test-protect-workbook.R | 1 tests/testthat/test-pugi_cpp.R | 29 tests/testthat/test-read_from_created_wb.R | 4 tests/testthat/test-read_sources.R | 16 tests/testthat/test-read_xlsx_random_seed.R | 2 tests/testthat/test-remove_worksheets.R | 7 tests/testthat/test-save.R | 242 ++++++- tests/testthat/test-strings_xml.R | 2 tests/testthat/test-styles_xml.R | 8 tests/testthat/test-tables.R | 5 tests/testthat/test-utils.R | 101 ++ tests/testthat/test-wb_functions.R | 30 tests/testthat/test-wb_styles.R | 603 +++++++++++++++++ tests/testthat/test-write.R | 38 - tests/testthat/test-writing_posixct.R | 2 vignettes/openxlsx2_read_to_df.Rmd | 6 vignettes/openxlsx2_style_manual.Rmd | 4 100 files changed, 3858 insertions(+), 1710 deletions(-)
Title: Spatial Covariance Functions
Description: Spatial (cross-)covariance and related geostatistical tools: the
nonparametric (cross-)covariance function , the spline correlogram, the
nonparametric phase coherence function, local indicators of spatial
association (LISA), (Mantel) correlogram, (Partial) Mantel test.
Author: Ottar N. Bjornstad [aut, cre],
Jun Cai [ctb]
Maintainer: Ottar N. Bjornstad <onb1@psu.edu>
Diff between ncf versions 1.3-2 dated 2022-05-07 and 1.3-3 dated 2026-01-16
CHANGES | 2 ++ DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS.md | 6 +++++- 4 files changed, 15 insertions(+), 9 deletions(-)
Title: Analysis and Presentation of Social Scientific Data
Description: This is a collection of tools for more efficiently understanding
and sharing the results of (primarily) regression analyses. There are also a
number of miscellaneous functions for statistical and programming purposes.
Support for models produced by the survey and lme4 packages are points of
emphasis.
Author: Jacob A. Long [aut, cre]
Maintainer: Jacob A. Long <jacob.long@sc.edu>
Diff between jtools versions 2.3.0 dated 2024-08-25 and 2.3.1 dated 2026-01-16
DESCRIPTION | 9 - MD5 | 42 +++--- NEWS.md | 6 R/colors.R | 2 R/gscale.R | 2 R/internal.R | 108 ++++++++++------ R/make_new_data.R | 12 + R/svytools.R | 2 README.md | 104 ++++++++------- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 13 + inst/doc/effect_plot.html | 41 +++--- inst/doc/summ.R | 10 - inst/doc/summ.Rmd | 2 inst/doc/summ.html | 306 ++++++++++++++++++++++++++-------------------- inst/doc/svycor.html | 15 +- man/gscale.Rd | 2 man/jtools_colors.Rd | 2 man/wgttest.Rd | 2 tests/testthat/Rplots.pdf |binary vignettes/summ.Rmd | 2 22 files changed, 397 insertions(+), 285 deletions(-)
Title: Find Routes for Supersonic Aircraft
Description: For supersonic aircraft, flying subsonic over land,
find the best route between airports. Allow for coastal buffer and
potentially closed regions. Use a minimal model of aircraft
performance: the focus is on time saved versus subsonic flight, rather
than on vertical flight profile. For modelling and forecasting, not for planning your
flight!
Author: David Marsh [aut, cre],
Enrico Spinielli [ctb],
EUROCONTROL [fnd, cph]
Maintainer: David Marsh <david6marsh@gmail.com>
Diff between himach versions 1.0.0 dated 2025-07-13 and 1.0.1 dated 2026-01-16
DESCRIPTION | 6 MD5 | 22 NEWS.md | 7 R/cache.R | 52 - R/grids.R | 2 R/routes.R | 1477 ++++++++++++++++++++----------- inst/doc/Supersonic_Routes.html | 13 inst/doc/Supersonic_Routes_in_depth.html | 11 man/find_leg.Rd | 5 man/hm_clean_cache.Rd | 5 man/hm_load_cache.Rd | 5 man/hm_save_cache.Rd | 5 12 files changed, 1028 insertions(+), 582 deletions(-)
Title: Fixed Rank Kriging
Description: A tool for spatial/spatio-temporal modelling and prediction with large datasets. The approach models the field, and hence the covariance function, using a set of basis functions. This fixed-rank basis-function representation facilitates the modelling of big data, and the method naturally allows for non-stationary, anisotropic covariance functions. Discretisation of the spatial domain into so-called basic areal units (BAUs) facilitates the use of observations with varying support (i.e., both point-referenced and areal supports, potentially simultaneously), and prediction over arbitrary user-specified regions. `FRK` also supports inference over various manifolds, including the 2D plane and 3D sphere, and it provides helper functions to model, fit, predict, and plot with relative ease. Version 2.0.0 and above also supports the modelling of non-Gaussian data (e.g., Poisson, binomial, negative-binomial, gamma, and inverse-Gaussian) by employing a generalised linear mixed model (GLMM) framew [...truncated...]
Author: Andrew Zammit-Mangion [aut, cre],
Matthew Sainsbury-Dale [aut]
Maintainer: Andrew Zammit-Mangion <andrewzm@gmail.com>
Diff between FRK versions 2.3.1 dated 2024-07-16 and 2.3.2 dated 2026-01-16
DESCRIPTION | 14 ++-- MD5 | 42 ++++++------- R/SRE.R | 1 R/SREpredict.R | 129 ++++++++++++++-------------------------- R/basisfns.R | 4 - R/geometryfns.R | 3 R/zzz.R | 4 + build/vignette.rds |binary data/AIRS_05_2003.rda |binary data/Am_data.rda |binary data/MODIS_cloud_df.rda |binary data/NOAA_df_1990.rda |binary data/isea3h.rda |binary data/worldmap.rda |binary inst/doc/FRK_intro.Rnw | 2 inst/doc/FRK_intro.pdf |binary inst/doc/FRK_non-Gaussian.pdf |binary man/SRE.Rd | 5 + man/auto_basis.Rd | 4 - vignettes/FRK_intro.Rnw | 2 vignettes/FRK_intro.fdb_latexmk |only vignettes/FRK_intro.fls |only vignettes/FRK_non-Gaussian.bib | 4 - 23 files changed, 94 insertions(+), 120 deletions(-)
Title: Ecological Metadata as Linked Data
Description: This is a utility for transforming Ecological Metadata Language
('EML') files into 'JSON-LD' and back into 'EML.' Doing so creates a
list-based representation of 'EML' in R, so that 'EML' data can easily
be manipulated using standard 'R' tools. This makes this package an
effective backend for other 'R'-based tools working with 'EML.' By
abstracting away the complexity of 'XML' Schema, developers can
build around native 'R' list objects and not have to worry about satisfying
many of the additional constraints of set by the schema (such as element
ordering, which is handled automatically). Additionally, the 'JSON-LD'
representation enables the use of developer-friendly 'JSON' parsing and
serialization that may facilitate the use of 'EML' in contexts outside of 'R,'
as well as the informatics-friendly serializations such as 'RDF' and
'SPARQL' queries.
Author: Carl Boettiger [aut, cre, cph] ,
Matthew B. Jones [aut, cph] ,
Bryce Mecum [aut, cph]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between emld versions 0.5.2 dated 2025-11-21 and 0.5.3 dated 2026-01-16
DESCRIPTION | 6 MD5 | 14 - NEWS.md | 5 build/vignette.rds |binary inst/WORDLIST | 7 inst/doc/tutorial.R | 130 ++++++++-------- inst/doc/tutorial.html | 17 +- tests/testthat/test-validate.R | 320 +++++++++++++++++++++++++---------------- 8 files changed, 298 insertions(+), 201 deletions(-)
Title: Constrained Generalized Additive Model
Description: A constrained generalized additive model is fitted by the cgam routine. Given a set of predictors, each of which may have a shape or order restrictions, the maximum likelihood estimator for the constrained generalized additive model is found using an iteratively re-weighted cone projection algorithm. The ShapeSelect routine chooses a subset of predictor variables and describes the component relationships with the response. For each predictor, the user needs only specify a set of possible shape or order restrictions. A model selection method chooses the shapes and orderings of the relationships as well as the variables. The cone information criterion (CIC) is used to select the best combination of variables and shapes. A genetic algorithm may be used when the set of possible models is large. In addition, the cgam routine implements a two-dimensional isotonic regression using warped-plane splines without additivity assumptions. It can also fit a convex or concave regression surface with [...truncated...]
Author: Mary Meyer [aut],
Xiyue Liao [aut, cre]
Maintainer: Xiyue Liao <xliao@sdsu.edu>
Diff between cgam versions 1.29 dated 2025-08-23 and 1.30 dated 2026-01-16
ChangeLog | 9 DESCRIPTION | 8 MD5 | 16 NAMESPACE | 3 R/cgam.R | 1065 ++++++++++++++++------------- R/cgamm.R | 2101 +++++++++++++++++++++++++++++++++++++++++++++-------------- R/globals.R | 3 R/testpar.R | 73 +- man/cgamm.Rd | 9 9 files changed, 2321 insertions(+), 966 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-11 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-09-03 1.1.1
2025-02-27 1.0.1
2024-05-28 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-08-08 0.1.2
2019-05-27 0.1.1
2017-06-25 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-01-17 0.7.4
2023-05-10 0.7.0
2023-01-31 0.6.5
2023-01-24 0.6.4
2022-10-19 0.5.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-11-24 0.2.2
2025-10-27 0.2.0
2023-08-21 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-01-12 0.2.0
2025-06-09 0.1.9
2024-07-14 0.1.8
2023-08-15 0.1.7
2023-08-12 0.1.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-25 0.4.1
2022-05-01 0.4.0
2022-01-23 0.3.3
2021-08-01 0.3.2
2021-03-12 0.3.1
2020-12-03 0.3.0
2020-07-24 0.2.9
2020-06-30 0.2.8
2020-03-30 0.2.7
2020-01-25 0.2.6
2020-01-09 0.2.5
2019-11-08 0.2.4
2019-11-02 0.2.3
2019-10-28 0.2.2
2019-10-06 0.2.1
2019-09-29 0.2.0
2019-09-05 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-09 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-01-06 0.0.0.1
Title: Survival Analysis
Description: Contains the core survival analysis routines, including
definition of Surv objects,
Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models,
and parametric accelerated failure time models.
Author: Terry M Therneau [aut, cre],
Thomas Lumley [ctb, trl] ,
Atkinson Elizabeth [ctb],
Crowson Cynthia [ctb]
Maintainer: Terry M Therneau <therneau.terry@mayo.edu>
Diff between survival versions 3.8-3 dated 2024-12-17 and 3.8-6 dated 2026-01-16
survival-3.8-3/survival/R/labels.survreg.R |only survival-3.8-3/survival/tests/nsk.R |only survival-3.8-3/survival/tests/nsk.Rout.save |only survival-3.8-6/survival/DESCRIPTION | 8 survival-3.8-6/survival/MD5 | 223 survival-3.8-6/survival/NAMESPACE | 12 survival-3.8-6/survival/R/Surv.R | 8 survival-3.8-6/survival/R/cox.zph.R | 5 survival-3.8-6/survival/R/coxph.R | 66 survival-3.8-6/survival/R/finegray.R | 2 survival-3.8-6/survival/R/lines.survfit.R |only survival-3.8-6/survival/R/model.frame.coxphms.R |only survival-3.8-6/survival/R/model.matrix.coxph.R | 4 survival-3.8-6/survival/R/nsk.R | 5 survival-3.8-6/survival/R/parsecovar.R | 21 survival-3.8-6/survival/R/plot.survfit.R | 727 -- survival-3.8-6/survival/R/points.survfit.R |only survival-3.8-6/survival/R/predict.coxphms.R | 21 survival-3.8-6/survival/R/print.coxph.R | 3 survival-3.8-6/survival/R/print.summary.coxph.penal.R | 10 survival-3.8-6/survival/R/print.survcheck.R | 13 survival-3.8-6/survival/R/print.survfit.R | 9 survival-3.8-6/survival/R/pspline.R | 5 survival-3.8-6/survival/R/residuals.coxph.R | 48 survival-3.8-6/survival/R/residuals.coxphms.R |only survival-3.8-6/survival/R/rsurvpart2.R | 4 survival-3.8-6/survival/R/stacker.R | 142 survival-3.8-6/survival/R/summary.coxph.penal.R | 8 survival-3.8-6/survival/R/summary.survfit.R | 13 survival-3.8-6/survival/R/summary.survfitms.R | 214 survival-3.8-6/survival/R/survConcordance.R | 4 survival-3.8-6/survival/R/survSplit.R | 10 survival-3.8-6/survival/R/survcheck.R | 47 survival-3.8-6/survival/R/survfit.R | 29 survival-3.8-6/survival/R/survfit.coxphms.R | 7 survival-3.8-6/survival/R/survfit0.R | 3 survival-3.8-6/survival/R/survfitAJ.R | 2 survival-3.8-6/survival/R/tmerge.R | 10 survival-3.8-6/survival/R/xtras.R | 108 survival-3.8-6/survival/build/vignette.rds |binary survival-3.8-6/survival/inst/NEWS.Rd | 56 survival-3.8-6/survival/inst/doc/adjcurve.pdf |binary survival-3.8-6/survival/inst/doc/approximate.pdf |binary survival-3.8-6/survival/inst/doc/compete.R | 14 survival-3.8-6/survival/inst/doc/compete.Rnw | 19 survival-3.8-6/survival/inst/doc/compete.pdf |binary survival-3.8-6/survival/inst/doc/concordance.pdf |binary survival-3.8-6/survival/inst/doc/matrix.pdf |binary survival-3.8-6/survival/inst/doc/methods.pdf |binary survival-3.8-6/survival/inst/doc/multi.pdf |binary survival-3.8-6/survival/inst/doc/other.Rnw | 30 survival-3.8-6/survival/inst/doc/other.pdf |binary survival-3.8-6/survival/inst/doc/population.pdf |binary survival-3.8-6/survival/inst/doc/redistribute.pdf |binary survival-3.8-6/survival/inst/doc/splines.pdf |binary survival-3.8-6/survival/inst/doc/survival.pdf |binary survival-3.8-6/survival/inst/doc/tiedtimes.pdf |binary survival-3.8-6/survival/inst/doc/timedep.R | 31 survival-3.8-6/survival/inst/doc/timedep.Rnw | 48 survival-3.8-6/survival/inst/doc/timedep.pdf |binary survival-3.8-6/survival/inst/doc/validate.pdf |binary survival-3.8-6/survival/man/Surv.Rd | 57 survival-3.8-6/survival/man/clogit.Rd | 4 survival-3.8-6/survival/man/concordance.Rd | 50 survival-3.8-6/survival/man/coxph.Rd | 28 survival-3.8-6/survival/man/coxph.control.Rd | 2 survival-3.8-6/survival/man/finegray.Rd | 7 survival-3.8-6/survival/man/lung.Rd | 4 survival-3.8-6/survival/man/lvcf.Rd |only survival-3.8-6/survival/man/nostutter.Rd |only survival-3.8-6/survival/man/plot.survfit.Rd | 28 survival-3.8-6/survival/man/predict.coxph.Rd | 17 survival-3.8-6/survival/man/print.summary.coxph.Rd | 7 survival-3.8-6/survival/man/reliability.Rd | 3 survival-3.8-6/survival/man/residuals.coxph.Rd | 87 survival-3.8-6/survival/man/summary.survfit.Rd | 10 survival-3.8-6/survival/man/survSplit.Rd | 5 survival-3.8-6/survival/man/survfit.formula.Rd | 9 survival-3.8-6/survival/man/survfit.object.Rd | 6 survival-3.8-6/survival/man/survfit_confint.Rd |only survival-3.8-6/survival/man/survreg.Rd | 9 survival-3.8-6/survival/man/vcov.coxph.Rd | 10 survival-3.8-6/survival/noweb/Makefile | 23 survival-3.8-6/survival/noweb/code.nw | 3238 ----------- survival-3.8-6/survival/noweb/code.toc |only survival-3.8-6/survival/noweb/coxph.Rnw | 81 survival-3.8-6/survival/noweb/coxsurv.Rnw | 4 survival-3.8-6/survival/noweb/coxsurv3.Rnw | 3 survival-3.8-6/survival/noweb/coxsurv3b.Rnw |only survival-3.8-6/survival/noweb/finegray.Rnw | 2 survival-3.8-6/survival/noweb/parse.Rnw | 47 survival-3.8-6/survival/noweb/plot.Rnw | 43 survival-3.8-6/survival/noweb/zph.Rnw | 5 survival-3.8-6/survival/tests/Examples/survival-Ex.Rout.save | 66 survival-3.8-6/survival/tests/coxsurv6.R | 43 survival-3.8-6/survival/tests/coxsurv6.Rout.save | 88 survival-3.8-6/survival/tests/model.matrix.R | 6 survival-3.8-6/survival/tests/model.matrix.Rout.save | 15 survival-3.8-6/survival/tests/mstrata.R | 13 survival-3.8-6/survival/tests/mstrata.Rout.save | 27 survival-3.8-6/survival/tests/multi2.R | 98 survival-3.8-6/survival/tests/multi2.Rout.save | 113 survival-3.8-6/survival/tests/multistate.R | 2 survival-3.8-6/survival/tests/multistate.Rout.save | 8 survival-3.8-6/survival/tests/multistrata.R |only survival-3.8-6/survival/tests/predsurv.R | 2 survival-3.8-6/survival/tests/predsurv.Rout.save | 8 survival-3.8-6/survival/tests/residms.R |only survival-3.8-6/survival/tests/residms.Rout.save |only survival-3.8-6/survival/tests/summarydf.R |only survival-3.8-6/survival/tests/survcheck.R | 22 survival-3.8-6/survival/tests/survcheck.Rout.save | 36 survival-3.8-6/survival/tests/survexpm.R |only survival-3.8-6/survival/tests/testci.R | 5 survival-3.8-6/survival/tests/testci.Rout.save | 14 survival-3.8-6/survival/tests/tmerge3.R | 5 survival-3.8-6/survival/tests/tmerge3.Rout.save | 13 survival-3.8-6/survival/tests/tmerge4.R |only survival-3.8-6/survival/tests/tmerge4.Rout.save |only survival-3.8-6/survival/vignettes/compete.Rnw | 19 survival-3.8-6/survival/vignettes/other.Rnw | 30 survival-3.8-6/survival/vignettes/timedep.Rnw | 48 122 files changed, 1702 insertions(+), 4757 deletions(-)
Title: Data Package of Portland, Oregon Trees
Description: An engaging collection of datasets from Portland Parks and Recreation. The city of Portland inventoried every tree in over 170 parks and along the streets in 96 neighborhoods.
Author: Kelly McConville [aut, cre],
Isabelle Caldwell [aut],
OR City of Portland [cph],
Nicholas Horton [ctb]
Maintainer: Kelly McConville <k.mcconville@bucknell.edu>
This is a re-admission after prior archival of version 0.4.0 dated 2020-08-17
Diff between pdxTrees versions 0.4.0 dated 2020-08-17 and 0.5.0 dated 2026-01-16
DESCRIPTION | 13 MD5 | 22 R/get_pdxTrees_parks.R | 2 R/get_pdxTrees_streets.R | 4 README.md | 59 build/vignette.rds |binary inst/doc/pdxTrees-vignette.R | 12 inst/doc/pdxTrees-vignette.Rmd | 4 inst/doc/pdxTrees-vignette.html | 3183 ++++++++++++++++++++++++---------------- man/get_pdxTrees_parks.Rd | 2 man/get_pdxTrees_streets.Rd | 4 vignettes/pdxTrees-vignette.Rmd | 4 12 files changed, 2007 insertions(+), 1302 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-11 2.4.7
2023-12-13 2.4.5.1
2023-02-09 2.4.5
2016-02-16 2.4.1
2015-08-18 2.4
2015-05-19 2.3
2014-03-20 2.2
2012-11-19 2.1.2
2012-11-17 2.1.1
2012-08-20 2.1
2012-03-28 2.0
2010-05-22 0.6.5
2010-05-04 0.6.4
2010-02-18 0.6.3
2010-02-08 0.6.1
2009-09-03 0.6
2009-06-10 0.5
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2024-10-23 2.5.0
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2015-06-04 2.3.1
2015-05-20 2.3
2014-03-24 2.2
2012-11-18 2.1.2
2012-08-20 2.1
2012-03-28 2.0
2011-07-28 1.1.3
2010-05-04 1.1.2
2010-03-01 1.1.1
2010-02-18 1.1
2009-11-13 1.0
2009-02-19 0.9.2
2008-06-18 0.9.0
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2024-08-26 0.1.0
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2023-02-12 2.4.6
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
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2021-09-22 1.1.0
2021-08-18 1.0.1
2018-02-09 0.4.0
2018-01-03 0.3.3
2017-11-27 0.3.1
2017-02-05 0.3.0
2017-01-20 0.2.3
2016-09-11 0.2.2
2015-07-08 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
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2021-07-09 0.0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
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2022-08-31 3.7.1
2020-09-08 3.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
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2022-05-15 1.2.1
2022-02-28 1.2.0
2021-09-28 1.1.2
2021-09-26 1.1.1
2021-09-23 1.1.0
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2013-11-11 0.3-2.1
2009-10-15 0.3-2
2009-02-17 0.3-1
2008-12-18 0.3
2008-05-16 0.2
2008-04-07 0.1-2
2007-07-16 0.1-1
2007-07-10 0.1
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