Title: Create Blogs and Websites with R Markdown
Description: Write blog posts and web pages in R Markdown. This package
supports the static site generator 'Hugo' (<https://gohugo.io>) best,
and it also supports 'Jekyll' (<https://jekyllrb.com>) and 'Hexo'
(<https://hexo.io>).
Author: Yihui Xie [aut, cre] ,
Christophe Dervieux [aut] ,
Alison Presmanes Hill [aut] ,
Amber Thomas [ctb],
Beilei Bian [ctb],
Brandon Greenwell [ctb],
Brian Barkley [ctb],
Deependra Dhakal [ctb],
Eric Nantz [ctb],
Forest Fang [ctb],
Garrick Aden-Buie [ctb] [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between blogdown versions 1.22 dated 2025-10-28 and 1.23 dated 2026-01-17
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/install.R | 32 ++++++++++++++++++++++---------- man/hugo_installers.Rd | 11 ++++++----- 4 files changed, 34 insertions(+), 21 deletions(-)
Title: Marginal Mediation
Description: Provides the ability to perform "Marginal Mediation"--mediation
wherein the indirect and direct effects are in terms of the average marginal effects
(Bartus, 2005, <https://EconPapers.repec.org/RePEc:tsj:stataj:v:5:y:2005:i:3:p:309-329>).
The style of the average marginal effects stems from Thomas Leeper's work on the "margins" package.
This framework allows the use of categorical mediators and outcomes with little change in interpretation
from the continuous mediators/outcomes. See <doi:10.13140/RG.2.2.18465.92001> for more details
on the method.
Author: Tyson S Barrett [aut, cre] ,
Angelo Canty [ctb] ,
Brian D. Ripley [ctb] ,
Thomas Leeper [ctb]
Maintainer: Tyson S Barrett <t.barrett88@gmail.com>
Diff between MarginalMediation versions 0.7.2 dated 2022-04-15 and 0.7.3 dated 2026-01-17
DESCRIPTION | 13 +- MD5 | 24 +-- NEWS.md | 4 R/Marginal_Mediation.R | 2 R/frAMEs.R | 2 R/utils.R | 2 README.md | 54 ++++---- build/vignette.rds |binary inst/doc/MarginalMediation_vignette.R | 8 - inst/doc/MarginalMediation_vignette.html | 196 +++++++++++++++---------------- man/amed.Rd | 2 man/frames.Rd | 2 man/mma.Rd | 2 13 files changed, 163 insertions(+), 148 deletions(-)
More information about MarginalMediation at CRAN
Permanent link
Title: Cosmological Distances, Times, Luminosities, Etc
Description: Package encapsulates standard expressions for distances, times, luminosities, and other quantities useful in observational cosmology, including molecular line observations. Currently coded for a flat universe only.
Author: Andrew Harris [aut, cre]
Maintainer: Andrew Harris <harris@astro.umd.edu>
Diff between cosmoFns versions 1.1-1 dated 2022-05-09 and 1.1-2 dated 2026-01-17
DESCRIPTION | 17 +++++++++-------- MD5 | 4 ++-- man/cosmoFns-package.Rd | 7 +++---- 3 files changed, 14 insertions(+), 14 deletions(-)
Title: Fitting and Simulating Mixtures of Watson Distributions
Description: Tools for fitting and simulating mixtures of Watson distributions.
The package is described in Sablica, Hornik and Leydold (2026) <doi:10.18637/jss.v115.i04>.
The random sampling scheme of the package offers two sampling
algorithms that are based of the results of Sablica, Hornik and Leydold (2022)
<doi:10.1080/10618600.2024.2416521>.
What is more, the package offers a smart tool to combine these two methods,
and based on the selected parameters, it approximates the relative sampling
speed for both methods and picks the faster one. In addition, the package
offers a fitting function for the mixtures of Watson distribution, that
uses the expectation-maximization (EM) algorithm. Special features are
the possibility to use multiple variants of the E-step and M-step,
sparse matrices for the data representation and state of the art methods
for numerical evaluation of needed special functions using the results of
Sablica and Hornik (2022) <doi:10.1090/mcom/3690> and
Sablica [...truncated...]
Author: Lukas Sablica [aut, cre] ,
Kurt Hornik [aut] ,
Josef Leydold [aut] ,
Gerard Jungman [ctb, cph] ,
Brian Gough [ctb, cph]
Maintainer: Lukas Sablica <lsablica@wu.ac.at>
Diff between watson versions 0.6 dated 2025-02-19 and 1.0.0 dated 2026-01-17
DESCRIPTION | 16 +++++++++------- MD5 | 11 +++++++---- NEWS.md | 6 ++++++ R/watson.R | 3 +++ build |only inst |only man/figures |only man/watson.Rd | 5 +++++ 8 files changed, 30 insertions(+), 11 deletions(-)
Title: Translate R Expressions to 'MathML' and 'LaTeX'/'MathJax'
Description: Translate R expressions to 'MathML' or 'MathJax'/'LaTeX' so that
they can be rendered in R markdown documents and shiny apps. This package
depends on R package 'rolog', which requires an installation of the
'SWI'-'Prolog' runtime either from 'swi-prolog.org' or from R
package 'rswipl'.
Author: Matthias Gondan [aut, cre, cph] ,
Irene Alfarone [aut] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
This is a re-admission after prior archival of version 1.6 dated 2025-08-19
Diff between mathml versions 1.6 dated 2025-08-19 and 1.7 dated 2026-01-17
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ build/vignette.rds |binary inst/pl/lib/op.pl | 6 +++--- 5 files changed, 15 insertions(+), 11 deletions(-)
Title: Missingness Alleviation for Network Analysis
Description: Provides functionality for estimating cross-sectional network structures representing partial correlations while accounting for missing data. Networks are estimated via neighborhood selection or regularization, with model selection guided by information criteria. Missing data can be handled primarily via multiple imputation or a maximum likelihood-based approach, as demonstrated by Nehler and Schultze (2025a) <doi:10.31234/osf.io/qpj35> and Nehler and Schultze (2025b) <doi:10.1080/00273171.2025.2503833>. Deletion-based approaches are also available but play a secondary role.
Author: Kai Jannik Nehler [aut, cre]
Maintainer: Kai Jannik Nehler <nehler@psych.uni-frankfurt.de>
Diff between mantar versions 0.1.0 dated 2025-07-11 and 0.2.0 dated 2026-01-17
mantar-0.1.0/mantar/data/mantar_dummy_full.rda |only mantar-0.1.0/mantar/data/mantar_dummy_mis.rda |only mantar-0.1.0/mantar/man/mantar_dummy_full.Rd |only mantar-0.2.0/mantar/DESCRIPTION | 19 mantar-0.2.0/mantar/MD5 | 62 +- mantar-0.2.0/mantar/NAMESPACE | 11 mantar-0.2.0/mantar/NEWS.md |only mantar-0.2.0/mantar/R/checker.R | 36 - mantar-0.2.0/mantar/R/cor_calc.R |only mantar-0.2.0/mantar/R/data.R | 75 +- mantar-0.2.0/mantar/R/ics.R | 325 ++++++++++ mantar-0.2.0/mantar/R/matrix_regression.R | 16 mantar-0.2.0/mantar/R/methods.R | 66 +- mantar-0.2.0/mantar/R/neighborhood_net.R | 336 +++++++---- mantar-0.2.0/mantar/R/ordered_suggest.R |only mantar-0.2.0/mantar/R/regularization_net.R |only mantar-0.2.0/mantar/R/search_regression.R | 262 +++++--- mantar-0.2.0/mantar/README.md | 309 ++-------- mantar-0.2.0/mantar/build |only mantar-0.2.0/mantar/data/mantar_dummy_full_cat.rda |only mantar-0.2.0/mantar/data/mantar_dummy_full_cont.rda |only mantar-0.2.0/mantar/data/mantar_dummy_full_mix.rda |only mantar-0.2.0/mantar/data/mantar_dummy_mis_cat.rda |only mantar-0.2.0/mantar/data/mantar_dummy_mis_cont.rda |only mantar-0.2.0/mantar/data/mantar_dummy_mis_mix.rda |only mantar-0.2.0/mantar/inst |only mantar-0.2.0/mantar/man/cor_calc.Rd |only mantar-0.2.0/mantar/man/figures |only mantar-0.2.0/mantar/man/mantar_dummy_data.Rd |only mantar-0.2.0/mantar/man/neighborhood_net.Rd | 174 ++++- mantar-0.2.0/mantar/man/ordered_suggest.Rd |only mantar-0.2.0/mantar/man/regression_opt.Rd | 145 +++- mantar-0.2.0/mantar/man/regularization_net.Rd |only mantar-0.2.0/mantar/tests/testthat/test-cor_calc.R |only mantar-0.2.0/mantar/tests/testthat/test-ics.R | 285 +++++++++ mantar-0.2.0/mantar/tests/testthat/test-matrix_regression.R | 34 + mantar-0.2.0/mantar/tests/testthat/test-methods.R |only mantar-0.2.0/mantar/tests/testthat/test-neighborhood_net.R | 144 ++++ mantar-0.2.0/mantar/tests/testthat/test-ordered_suggest.R |only mantar-0.2.0/mantar/tests/testthat/test-regularization_net.R |only mantar-0.2.0/mantar/tests/testthat/test-search_regression.R | 161 ++++- mantar-0.2.0/mantar/vignettes |only 42 files changed, 1824 insertions(+), 636 deletions(-)
Title: Data to Accompany Applied Linear Regression 4th Edition
Description: Datasets to Accompany S. Weisberg (2014),
"Applied Linear Regression," 4th edition. Many data files
in this package are included in the alr3 package as well, so only one of them
should be used.
Author: Sanford Weisberg [aut, cre]
Maintainer: Sanford Weisberg <sandy@umn.edu>
Diff between alr4 versions 1.0.6 dated 2018-04-20 and 1.0.7 dated 2026-01-17
DESCRIPTION | 20 ++++--- MD5 | 24 ++++---- NEWS | 11 +++- inst/CITATION | 29 ++++------ man/Rpdata.Rd | 79 ++++++++++++++-------------- man/UN1.Rd | 4 - man/UN11.Rd | 89 ++++++++++++++++---------------- man/ftcollinssnow.Rd | 57 ++++++++++---------- man/ftcollinstemp.Rd | 55 ++++++++++---------- man/fuel2001.Rd | 108 +++++++++++++++++++-------------------- man/mile.Rd | 5 - man/pipeline.Rd | 87 ++++++++++++++++--------------- man/rateprof.Rd | 140 +++++++++++++++++++++++++-------------------------- 13 files changed, 357 insertions(+), 351 deletions(-)
Title: Procedures for Gaussian and Non Gaussian Geostatistical (Large)
Data Analysis
Description: Functions for Gaussian and Non Gaussian (bivariate) spatial and spatio-temporal data analysis are provided for a) (fast) simulation of random fields, b) inference for random fields using standard likelihood and a likelihood approximation method called weighted composite likelihood based on pairs and b) prediction using (local) best linear unbiased prediction. Weighted composite likelihood can be very efficient for estimating massive datasets. Both regression and spatial (temporal) dependence analysis can be jointly performed. Flexible covariance models for spatial and spatial-temporal data on Euclidean domains and spheres are provided. There are also many useful functions for plotting and performing diagnostic analysis. Different non Gaussian random fields can be considered in the analysis. Among them, random fields with marginal distributions such as Skew-Gaussian, Student-t, Tukey-h, Sin-Arcsin, Two-piece, Weibull, Gamma, Log-Gaussian, Binomial, Negative Binomial and Poisson. Se [...truncated...]
Author: Moreno Bevilacqua [aut, cre, cph],
Victor Morales-Onate [ctb],
Francisco Cuevas-Pacheco [ctb],
Christian Caamano-Carrillo [ctb]
Maintainer: Moreno Bevilacqua <moreno.bevilacqua89@gmail.com>
Diff between GeoModels versions 2.2.1 dated 2025-11-24 and 2.2.2 dated 2026-01-17
GeoModels-2.2.1/GeoModels/R/Geovarestbootstrap.R |only GeoModels-2.2.1/GeoModels/data/Cubatemp.rda |only GeoModels-2.2.1/GeoModels/data/austemp.rda |only GeoModels-2.2.1/GeoModels/man/Cubatemp.Rd |only GeoModels-2.2.1/GeoModels/man/austemp.Rd |only GeoModels-2.2.2/GeoModels/DESCRIPTION | 10 GeoModels-2.2.2/GeoModels/MD5 | 123 GeoModels-2.2.2/GeoModels/NAMESPACE | 3 GeoModels-2.2.2/GeoModels/R/GeoCV.R | 71 GeoModels-2.2.2/GeoModels/R/GeoCompositeLik.r | 39 GeoModels-2.2.2/GeoModels/R/GeoCompositeLik2.R | 126 GeoModels-2.2.2/GeoModels/R/GeoCovariogram.r | 30 GeoModels-2.2.2/GeoModels/R/GeoCovmatrix.r | 4 GeoModels-2.2.2/GeoModels/R/GeoFit.r | 28 GeoModels-2.2.2/GeoModels/R/GeoFit2.R | 26 GeoModels-2.2.2/GeoModels/R/GeoIndCompositeLik2.R | 19 GeoModels-2.2.2/GeoModels/R/GeoKrig.r | 11 GeoModels-2.2.2/GeoModels/R/GeoKrigloc.R | 519 +- GeoModels-2.2.2/GeoModels/R/GeoLik.r | 17 GeoModels-2.2.2/GeoModels/R/GeoNeighIndex.R | 726 ++-- GeoModels-2.2.2/GeoModels/R/GeoNeighbSelect.R | 378 +- GeoModels-2.2.2/GeoModels/R/GeoNeighborhood.R | 25 GeoModels-2.2.2/GeoModels/R/GeoQQ.R | 280 - GeoModels-2.2.2/GeoModels/R/GeoSimCopula.R | 22 GeoModels-2.2.2/GeoModels/R/GeoTestIsotropy.R | 66 GeoModels-2.2.2/GeoModels/R/GeoVarestbootstrap.R |only GeoModels-2.2.2/GeoModels/R/GeoVariogram.r | 622 ++- GeoModels-2.2.2/GeoModels/R/GeoVariogramDir.R | 207 - GeoModels-2.2.2/GeoModels/R/GeoWls.r | 6 GeoModels-2.2.2/GeoModels/R/Utility.r | 38 GeoModels-2.2.2/GeoModels/R/Utility_cov.R | 13 GeoModels-2.2.2/GeoModels/build/partial.rdb |binary GeoModels-2.2.2/GeoModels/data/anomalies.rda |binary GeoModels-2.2.2/GeoModels/data/datalist | 3 GeoModels-2.2.2/GeoModels/data/madagascartemp.rda |binary GeoModels-2.2.2/GeoModels/data/rainNLD.rda |only GeoModels-2.2.2/GeoModels/data/spanish_wind.rda |binary GeoModels-2.2.2/GeoModels/data/winds.coords.rda |binary GeoModels-2.2.2/GeoModels/data/winds.rda |binary GeoModels-2.2.2/GeoModels/man/CompIndLik2.Rd | 3 GeoModels-2.2.2/GeoModels/man/CompLik.Rd | 3 GeoModels-2.2.2/GeoModels/man/CompLik2.Rd | 3 GeoModels-2.2.2/GeoModels/man/GeoFit.Rd | 499 +- GeoModels-2.2.2/GeoModels/man/GeoFit2.Rd | 319 - GeoModels-2.2.2/GeoModels/man/GeoNeighIndex.Rd | 125 GeoModels-2.2.2/GeoModels/man/GeoNeighbSelect.Rd | 8 GeoModels-2.2.2/GeoModels/man/GeoSimCopula.Rd | 3 GeoModels-2.2.2/GeoModels/man/GeoSimapprox.Rd | 11 GeoModels-2.2.2/GeoModels/man/GeoVariogram.Rd | 321 - GeoModels-2.2.2/GeoModels/man/GeovariogramDir.Rd | 84 GeoModels-2.2.2/GeoModels/man/Lik.Rd | 3 GeoModels-2.2.2/GeoModels/man/MargParam.Rd |only GeoModels-2.2.2/GeoModels/man/NuisParam.rd | 24 GeoModels-2.2.2/GeoModels/man/StartParam.Rd | 151 GeoModels-2.2.2/GeoModels/man/WlsStart.Rd | 166 GeoModels-2.2.2/GeoModels/man/rainNLD.Rd |only GeoModels-2.2.2/GeoModels/src/2F1.c | 52 GeoModels-2.2.2/GeoModels/src/2kummer.c | 2 GeoModels-2.2.2/GeoModels/src/CompositeLikelihood2.c | 325 - GeoModels-2.2.2/GeoModels/src/CompositeLikelihood2_ani.c | 2 GeoModels-2.2.2/GeoModels/src/CompositeLikelihoodCond2.c | 177 - GeoModels-2.2.2/GeoModels/src/CompositeLikelihoodCond2_ani.c | 2 GeoModels-2.2.2/GeoModels/src/CorrelationFunction.c | 479 ++ GeoModels-2.2.2/GeoModels/src/Distributions.c | 1912 ++++------- GeoModels-2.2.2/GeoModels/src/Utility.c | 6 GeoModels-2.2.2/GeoModels/src/header.h | 7 GeoModels-2.2.2/GeoModels/src/weightedleastsquare.c | 8 67 files changed, 4192 insertions(+), 3915 deletions(-)
Title: Create 'shiny' Inputs from Vectors, 'data.frames', or any R
Object
Description: Provides an interface to 'shiny' inputs used for filtering
vectors, data.frames, and other objects. 'S7'-based implementation
allows for seamless extensibility.
Author: Josh Livingston [cre, aut],
Novica Nakov [ctb]
Maintainer: Josh Livingston <joshwlivingston@gmail.com>
Diff between shinyfilters versions 0.1.0 dated 2025-12-17 and 0.3.0 dated 2026-01-17
shinyfilters-0.1.0/shinyfilters/R/arg_name_input_id.R |only shinyfilters-0.1.0/shinyfilters/R/arg_name_input_value.R |only shinyfilters-0.1.0/shinyfilters/R/dataframe.R |only shinyfilters-0.3.0/shinyfilters/DESCRIPTION | 41 shinyfilters-0.3.0/shinyfilters/MD5 | 57 - shinyfilters-0.3.0/shinyfilters/NAMESPACE | 6 shinyfilters-0.3.0/shinyfilters/NEWS.md | 50 shinyfilters-0.3.0/shinyfilters/R/apply_filters.R |only shinyfilters-0.3.0/shinyfilters/R/arg_name_input.R |only shinyfilters-0.3.0/shinyfilters/R/args_filter_input.R | 68 + shinyfilters-0.3.0/shinyfilters/R/filterInput.R | 57 - shinyfilters-0.3.0/shinyfilters/R/get_filter_logical.R |only shinyfilters-0.3.0/shinyfilters/R/imports-base.R | 16 shinyfilters-0.3.0/shinyfilters/R/shiny.R |only shinyfilters-0.3.0/shinyfilters/R/updateFilterInput.R | 61 - shinyfilters-0.3.0/shinyfilters/R/utils.R | 62 - shinyfilters-0.3.0/shinyfilters/README.md | 277 ++--- shinyfilters-0.3.0/shinyfilters/inst/doc/customizing-shinyfilters.html | 4 shinyfilters-0.3.0/shinyfilters/man/apply_filters.Rd | 2 shinyfilters-0.3.0/shinyfilters/man/arg_name_input_generics.Rd |only shinyfilters-0.3.0/shinyfilters/man/args_filter_input.Rd | 30 shinyfilters-0.3.0/shinyfilters/man/filterInput.Rd | 36 shinyfilters-0.3.0/shinyfilters/man/get_filter_logical.Rd | 20 shinyfilters-0.3.0/shinyfilters/man/get_input_ids.Rd |only shinyfilters-0.3.0/shinyfilters/man/get_input_labels.Rd |only shinyfilters-0.3.0/shinyfilters/man/get_input_values.Rd |only shinyfilters-0.3.0/shinyfilters/man/serverFilterInput.Rd | 2 shinyfilters-0.3.0/shinyfilters/man/updateFilterInput.Rd | 34 shinyfilters-0.3.0/shinyfilters/tests/testthat/setup_00_S7.R |only shinyfilters-0.3.0/shinyfilters/tests/testthat/setup_01_test_data.R |only shinyfilters-0.3.0/shinyfilters/tests/testthat/setup_02_test_app.R |only shinyfilters-0.3.0/shinyfilters/tests/testthat/test-apply_filters.R |only shinyfilters-0.3.0/shinyfilters/tests/testthat/test-arg_name_input.R |only shinyfilters-0.3.0/shinyfilters/tests/testthat/test-args_filter_input.R |only shinyfilters-0.3.0/shinyfilters/tests/testthat/test-args_update_filter_input.R |only shinyfilters-0.3.0/shinyfilters/tests/testthat/test-errors.R |only shinyfilters-0.3.0/shinyfilters/tests/testthat/test-filterInput.R | 513 +++++++--- shinyfilters-0.3.0/shinyfilters/tests/testthat/test-get_filter_logical.R |only shinyfilters-0.3.0/shinyfilters/tests/testthat/test-get_input_values.R |only shinyfilters-0.3.0/shinyfilters/tests/testthat/test-serverFilterInput.R |only shinyfilters-0.3.0/shinyfilters/tests/testthat/test-updateFilterInput.R |only 41 files changed, 868 insertions(+), 468 deletions(-)
Title: Robust Pathway Enrichment for DNA Methylation Studies Using
Ensemble Voting
Description: Performs pathway enrichment analysis using a voting-based framework that integrates CpG–gene regulatory information from expression quantitative trait methylation (eQTM) data. For a grid of top-ranked CpGs and filtering thresholds, gene sets are generated and refined using an entropy-based pruning strategy that balances information richness, stability, and probe bias correction. In particular, gene lists dominated by genes with disproportionately high numbers of CpG mappings are penalized to mitigate active probe bias—a common artifact in methylation data analysis. Enrichment results across parameter combinations are then aggregated using a voting scheme, prioritizing pathways that are consistently recovered under diverse settings and robust to parameter perturbations.
Author: Yinan Zheng [aut, cre]
Maintainer: Yinan Zheng <y-zheng@northwestern.edu>
Diff between PathwayVote versions 0.1.2 dated 2025-10-01 and 0.1.3 dated 2026-01-17
DESCRIPTION | 16 ++-- MD5 | 13 +-- NAMESPACE | 3 R/eQTM-class.R | 16 +++- R/pathway-vote.R | 140 +++++++++++++++++++++++++++++++++++++-- R/utils.R | 85 ++++++++++++++++++++--- man/pathway_vote.Rd | 15 +++- man/write_enrich_results_xlsx.Rd |only 8 files changed, 248 insertions(+), 40 deletions(-)
Title: Keyword Assisted Topic Models
Description: Fits keyword assisted topic models (keyATM) using collapsed Gibbs samplers. The keyATM combines the latent dirichlet allocation (LDA) models with a small number of keywords selected by researchers in order to improve the interpretability and topic classification of the LDA. The keyATM can also incorporate covariates and directly model time trends. The keyATM is proposed in Eshima, Imai, and Sasaki (2024) <doi:10.1111/ajps.12779>.
Author: Shusei Eshima [aut, cre] ,
Tomoya Sasaki [aut],
Kosuke Imai [aut],
Chung-hong Chan [ctb] ,
Romain Francois [ctb] ,
Martin Feldkircher [ctb] ,
William Lowe [ctb],
Seo-young Silvia Kim [ctb]
Maintainer: Shusei Eshima <shuseieshima@gmail.com>
Diff between keyATM versions 0.5.4 dated 2025-07-21 and 0.5.5 dated 2026-01-17
DESCRIPTION | 6 ++-- MD5 | 12 ++++----- NEWS.md | 7 ++++- R/keyATMvb.R | 2 - R/model.R | 41 +++++++++++++++++++++------------- man/refine_keywords.Rd | 6 +++- tests/testthat/test-refine_keywords.R | 29 +++++++++++++++++++++++- 7 files changed, 73 insertions(+), 30 deletions(-)
Title: Split a Dataset for Training and Testing
Description: Procedure to optimally split a dataset for training and testing.
'SPlit' is based on the method of support points, which is independent of modeling methods.
Please see Joseph and Vakayil (2021) <doi:10.1080/00401706.2021.1921037> for details.
This work is supported by U.S. National Science Foundation grant DMREF-1921873.
Author: Akhil Vakayil [aut, cre],
Roshan Joseph [aut, ths],
Simon Mak [aut]
Maintainer: Akhil Vakayil <akhilv@gatech.edu>
This is a re-admission after prior archival of version 1.2 dated 2022-03-22
Diff between SPlit versions 1.2 dated 2022-03-22 and 1.3 dated 2026-01-17
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/RcppExports.R | 22 +++++++++++----------- src/Makevars | 1 - 4 files changed, 19 insertions(+), 20 deletions(-)
More information about OpenSourceAP.DownloadR at CRAN
Permanent link
Title: Intergovernmental Organizations Database
Description: Tools to extract information from the Intergovernmental
Organizations ('IGO') Database (v3), provided by the Correlates of War
Project <https://correlatesofwar.org/>. See also Pevehouse, J. C. et
al. (2020) <doi:10.1177/0022343319881175>.
Author: Diego Hernangomez [aut, cre, cph] ,
The Correlates of War Project [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between igoR versions 0.2.1 dated 2024-12-17 and 1.0.0 dated 2026-01-17
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-26 0.3.1
2025-07-09 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-29 3.1
2019-11-11 3.0
2019-04-01 2.3
2019-02-16 2.2
2019-01-21 2.1
2018-11-05 2.0
2018-05-28 1.4
2018-05-06 1.3
2018-04-18 1.2
2018-02-18 1.1
2017-11-09 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-31 1.2.0
2020-03-10 1.1.0
2019-10-01 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-19 0.13
2017-11-06 0.12
2017-09-03 0.11
2017-09-01 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-05-28 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-09-23 1.1.8
2021-06-29 1.1.7
2020-01-21 1.1.6
2019-12-12 1.1.5
2019-10-13 1.1.4
2019-04-17 1.1.3
2018-03-28 1.1.2
2018-03-22 1.1
2017-12-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-03-11 0.27.3
2024-10-01 0.27.2
2024-05-16 0.26.3
2024-03-08 0.26.1
2023-12-06 0.25.7
2023-11-28 0.25.6
2023-02-22 0.25.5
2022-08-09 0.25.4
2022-02-22 0.25.3
2021-12-07 0.25.2
2021-11-05 0.25.1.1
2021-07-25 0.25.1
2021-03-07 0.24.1
2021-02-08 0.23.6
2021-01-06 0.23.5
2020-11-25 0.23.4
2020-10-05 0.23.3
2020-07-16 0.23.2
2020-06-10 0.22.1
2020-03-10 0.21.2
2020-02-07 0.21.1
2019-12-02 0.20.2
2019-10-04 0.19.1
2019-08-21 0.18.3
2019-07-08 0.17.3
2019-06-25 0.17.1
2019-05-17 0.16.1
2019-04-07 0.15.1
2019-03-02 0.14.1
2019-02-13 0.13.1
2019-02-08 0.12
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-12-17 1.1.5
2023-03-13 1.1.4
2022-08-18 1.1.2
2022-05-27 1.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-05-21 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-09-15 1.1.0
2025-02-11 1.0.0
Title: Parse XML
Description: Bindings to 'libxml2' for working with XML data using a simple,
consistent interface based on 'XPath' expressions. Also supports XML schema
validation; for 'XSLT' transformations see the 'xslt' package.
Author: Hadley Wickham [aut],
Jim Hester [aut],
Jeroen Ooms [aut, cre],
Posit Software, PBC [cph, fnd],
R Foundation [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between xml2 versions 1.5.1 dated 2025-12-01 and 1.5.2 dated 2026-01-17
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ build/partial.rdb |binary inst/doc/modification.html | 12 ++++++------ src/xml2_doc.cpp | 2 ++ src/xml2_init.c | 12 ++++++++---- 7 files changed, 29 insertions(+), 19 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-10 0.3.8
2015-06-15 0.3.7
2014-08-04 0.3.6
2014-07-18 0.3.5
2014-04-29 0.3-1
2014-03-24 0.3-0
2013-02-14 0.2-6
2012-11-04 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-12-04 0.0.3
2020-08-25 0.0.2
2020-06-19 0.0.1
Title: Threshold Sweep Extensions for Qualitative Comparative Analysis
Description: Provides threshold sweep methods for Qualitative Comparative
Analysis (QCA). Implements Condition Threshold Sweep-Single (CTS-S),
Condition Threshold Sweep-Multiple (CTS-M), Outcome Threshold Sweep (OTS),
and Dual Threshold Sweep (DTS) for systematic exploration of threshold
calibration effects on crisp-set QCA results. These methods extend
traditional robustness approaches by treating threshold variation as an
exploratory tool for discovering causal structures. Built on top of the
'QCA' package by Dusa (2019) <doi:10.1007/978-3-319-75668-4>, with function
arguments following 'QCA' conventions. Based on set-theoretic methods by
Ragin (2008) <doi:10.7208/chicago/9780226702797.001.0001> and established
robustness protocols by Rubinson et al. (2019)
<doi:10.1177/00491241211036158>.
Author: Yuki Toyoda [aut, cre],
Japan Society for the Promotion of Science [fnd]
Maintainer: Yuki Toyoda <yuki.toyoda.ds@hosei.ac.jp>
Diff between TSQCA versions 0.1.2 dated 2026-01-07 and 1.1.0 dated 2026-01-17
TSQCA-0.1.2/TSQCA/inst/doc/TSQCA_Reproducible_JA.R |only TSQCA-0.1.2/TSQCA/inst/doc/TSQCA_Reproducible_JA.Rmd |only TSQCA-0.1.2/TSQCA/inst/doc/TSQCA_Reproducible_JA.html |only TSQCA-0.1.2/TSQCA/inst/doc/TSQCA_Tutorial_JA.R |only TSQCA-0.1.2/TSQCA/inst/doc/TSQCA_Tutorial_JA.Rmd |only TSQCA-0.1.2/TSQCA/inst/doc/TSQCA_Tutorial_JA.html |only TSQCA-0.1.2/TSQCA/vignettes/TSQCA_Reproducible_JA.Rmd |only TSQCA-0.1.2/TSQCA/vignettes/TSQCA_Tutorial_JA.Rmd |only TSQCA-1.1.0/TSQCA/DESCRIPTION | 17 TSQCA-1.1.0/TSQCA/MD5 | 103 TSQCA-1.1.0/TSQCA/NAMESPACE | 21 TSQCA-1.1.0/TSQCA/NEWS.md |only TSQCA-1.1.0/TSQCA/R/TSQCA-package.R | 410 ++- TSQCA-1.1.0/TSQCA/R/sample_data.R | 24 TSQCA-1.1.0/TSQCA/R/tsqca_config_chart.R |only TSQCA-1.1.0/TSQCA/R/tsqca_core.R | 336 ++- TSQCA-1.1.0/TSQCA/R/tsqca_cts.R | 1139 ++++++---- TSQCA-1.1.0/TSQCA/R/tsqca_helpers.R |only TSQCA-1.1.0/TSQCA/R/tsqca_methods.R |only TSQCA-1.1.0/TSQCA/R/tsqca_ots_dts.R | 1153 ++++++---- TSQCA-1.1.0/TSQCA/R/tsqca_report.R |only TSQCA-1.1.0/TSQCA/README.md | 684 +++--- TSQCA-1.1.0/TSQCA/build/partial.rdb |binary TSQCA-1.1.0/TSQCA/build/vignette.rds |binary TSQCA-1.1.0/TSQCA/inst/CITATION | 6 TSQCA-1.1.0/TSQCA/inst/doc/TSQCA_Reproducible_EN.R | 257 ++ TSQCA-1.1.0/TSQCA/inst/doc/TSQCA_Reproducible_EN.Rmd | 646 ++++- TSQCA-1.1.0/TSQCA/inst/doc/TSQCA_Reproducible_EN.html | 736 ++++-- TSQCA-1.1.0/TSQCA/inst/doc/TSQCA_Tutorial_EN.R | 405 +++ TSQCA-1.1.0/TSQCA/inst/doc/TSQCA_Tutorial_EN.Rmd | 714 ++++++ TSQCA-1.1.0/TSQCA/inst/doc/TSQCA_Tutorial_EN.html | 1332 ++++++++++-- TSQCA-1.1.0/TSQCA/man/SYMBOL_SETS.Rd |only TSQCA-1.1.0/TSQCA/man/TSQCA-package.Rd | 4 TSQCA-1.1.0/TSQCA/man/add_metrics_rows.Rd |only TSQCA-1.1.0/TSQCA/man/build_config_matrix.Rd |only TSQCA-1.1.0/TSQCA/man/build_single_chart.Rd |only TSQCA-1.1.0/TSQCA/man/config_chart_from_paths.Rd |only TSQCA-1.1.0/TSQCA/man/config_chart_multi_solutions.Rd |only TSQCA-1.1.0/TSQCA/man/config_matrix_to_md.Rd |only TSQCA-1.1.0/TSQCA/man/ctSweepM.Rd | 292 +- TSQCA-1.1.0/TSQCA/man/ctSweepS.Rd | 129 - TSQCA-1.1.0/TSQCA/man/df_to_md_table.Rd |only TSQCA-1.1.0/TSQCA/man/dtSweep.Rd | 290 +- TSQCA-1.1.0/TSQCA/man/escape_md.Rd |only TSQCA-1.1.0/TSQCA/man/extract_all_metrics.Rd |only TSQCA-1.1.0/TSQCA/man/extract_conditions_from_paths.Rd |only TSQCA-1.1.0/TSQCA/man/extract_path_metrics_for_chart.Rd |only TSQCA-1.1.0/TSQCA/man/extract_paths_from_solution.Rd |only TSQCA-1.1.0/TSQCA/man/extract_solution_list.Rd |only TSQCA-1.1.0/TSQCA/man/extract_solution_metrics_for_chart.Rd |only TSQCA-1.1.0/TSQCA/man/extract_terms.Rd |only TSQCA-1.1.0/TSQCA/man/format_qca_solution.Rd |only TSQCA-1.1.0/TSQCA/man/format_qca_solutions.Rd |only TSQCA-1.1.0/TSQCA/man/format_qca_term.Rd |only TSQCA-1.1.0/TSQCA/man/generate_config_chart.Rd |only TSQCA-1.1.0/TSQCA/man/generate_cross_threshold_chart.Rd |only TSQCA-1.1.0/TSQCA/man/generate_report.Rd |only TSQCA-1.1.0/TSQCA/man/generate_solution_note.Rd |only TSQCA-1.1.0/TSQCA/man/generate_term_level_chart.Rd |only TSQCA-1.1.0/TSQCA/man/generate_threshold_level_chart.Rd |only TSQCA-1.1.0/TSQCA/man/get_all_terms.Rd |only TSQCA-1.1.0/TSQCA/man/get_condition_status.Rd |only TSQCA-1.1.0/TSQCA/man/get_config_labels.Rd |only TSQCA-1.1.0/TSQCA/man/get_n_solutions.Rd |only TSQCA-1.1.0/TSQCA/man/identify_epi.Rd |only TSQCA-1.1.0/TSQCA/man/otSweep.Rd | 127 - TSQCA-1.1.0/TSQCA/man/parse_path_conditions.Rd |only TSQCA-1.1.0/TSQCA/man/parse_solution_terms.Rd |only TSQCA-1.1.0/TSQCA/man/print.tsqca_result.Rd |only TSQCA-1.1.0/TSQCA/man/qca_extract.Rd | 61 TSQCA-1.1.0/TSQCA/man/sample_data.Rd | 8 TSQCA-1.1.0/TSQCA/man/split_solution_terms.Rd |only TSQCA-1.1.0/TSQCA/man/summary.tsqca_result.Rd |only TSQCA-1.1.0/TSQCA/man/write_full_report.Rd |only TSQCA-1.1.0/TSQCA/man/write_simple_report.Rd |only TSQCA-1.1.0/TSQCA/tests/testthat/test-s3-methods.R |only TSQCA-1.1.0/TSQCA/vignettes/TSQCA_Reproducible_EN.Rmd | 646 ++++- TSQCA-1.1.0/TSQCA/vignettes/TSQCA_Tutorial_EN.Rmd | 714 ++++++ 78 files changed, 7730 insertions(+), 2524 deletions(-)
Title: Hasse Diagram of the Layout Structure and Restricted Layout
Structure
Description: Returns a Hasse diagram of the layout structure (Bate and Chatfield (2016)) <doi:10.1080/00224065.2016.11918173> or the restricted layout structure (Bate and Chatfield (2016)) <doi:10.1080/00224065.2016.11918174> of an experimental design.
Author: Damianos Michaelides [aut, cre],
Simon Bate [aut],
Marion Chatfield [aut]
Maintainer: Damianos Michaelides <dm3g15@soton.ac.uk>
Diff between hassediagrams versions 1.1 dated 2025-08-21 and 2.0 dated 2026-01-17
hassediagrams-1.1/hassediagrams/R/itemlist.R |only hassediagrams-1.1/hassediagrams/R/print_summary_rls.R |only hassediagrams-1.1/hassediagrams/man/itemlist.Rd |only hassediagrams-1.1/hassediagrams/man/rlsobjects.Rd |only hassediagrams-2.0/hassediagrams/DESCRIPTION | 8 hassediagrams-2.0/hassediagrams/MD5 | 26 hassediagrams-2.0/hassediagrams/NAMESPACE | 6 hassediagrams-2.0/hassediagrams/R/hassediagrams.R | 5 hassediagrams-2.0/hassediagrams/R/hasselayout.R | 790 +++---------- hassediagrams-2.0/hassediagrams/R/hasserls.R | 619 +++++----- hassediagrams-2.0/hassediagrams/R/internal.R | 1020 +++++++++++++----- hassediagrams-2.0/hassediagrams/R/print_summary_ls.R |only hassediagrams-2.0/hassediagrams/README.md | 44 hassediagrams-2.0/hassediagrams/man/hassediagrams.Rd | 5 hassediagrams-2.0/hassediagrams/man/hasselayout.Rd | 86 + hassediagrams-2.0/hassediagrams/man/hasserls.Rd | 328 ++--- hassediagrams-2.0/hassediagrams/man/lsobjects.Rd |only 17 files changed, 1575 insertions(+), 1362 deletions(-)
Title: Tools to Work with Survey Data
Description: Data obtained from surveys contains information not only about the
survey responses, but also the survey metadata, e.g. the original survey
questions and the answer options. The 'surveydata' package makes it easy to
keep track of this metadata, and to easily extract columns with
specific questions.
Author: Andrie de Vries [aut, cre, cph],
Evan Odell [ctb]
Maintainer: Andrie de Vries <apdevries@gmail.com>
Diff between surveydata versions 0.2.7 dated 2023-03-12 and 0.2.8 dated 2026-01-17
DESCRIPTION | 10 +- MD5 | 44 ++++----- NAMESPACE | 1 NEWS | 9 + R/dplyr_verbs.R | 7 - R/extract.R | 2 R/questions.R | 10 +- R/surveydata-package.R | 160 +++++++++++++++++------------------ R/surveydata.R | 4 R/varlabels.R | 2 build/vignette.rds |binary inst/doc/surveydata.R | 2 inst/doc/surveydata.html | 90 +++++++++---------- inst/vignette_child/child.Rmd | 2 inst/vignette_child/child.html | 7 - man/dplyr-surveydata.Rd | 97 ++++++++++----------- man/question_text_common.Rd | 2 man/question_text_unique.Rd | 2 man/questions.Rd | 2 man/split_common_unique.Rd | 2 man/surveydata-package.Rd | 9 + man/which.q.Rd | 2 tests/testthat/test-09-dplyr-verbs.R | 2 23 files changed, 232 insertions(+), 236 deletions(-)
Title: R Bindings to the Calendaring Functionality of 'QuantLib'
Description: 'QuantLib' bindings are provided for R using 'Rcpp' via an updated
variant of the header-only 'Quantuccia' project (put together initially by Peter
Caspers) offering an essential subset of 'QuantLib' (and now maintained separately
for the calendaring subset). See the included file 'AUTHORS' for a full list of
contributors to both 'QuantLib' and 'Quantuccia'. Note that this package provided
an initial viability proof, current work is done (via approximately quarterly releases
tracking 'QuantLib') in the smaller package 'qlcal' which is generally preferred.
Author: Dirk Eddelbuettel [aut, cre] ,
QuantLib Authors [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppQuantuccia versions 0.1.3 dated 2025-11-24 and 0.1.4 dated 2026-01-17
ChangeLog | 15 +++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- build/partial.rdb |binary inst/NEWS.Rd | 9 +++++++++ inst/include/RcppQuantuccia_as_wrap.h | 3 ++- src/Makevars | 6 +----- src/ql/errors.cpp | 19 +++++++++---------- 8 files changed, 47 insertions(+), 27 deletions(-)
More information about RcppQuantuccia at CRAN
Permanent link
More information about provolleyballr at CRAN
Permanent link
Title: Interactive Structural Equation Modeling (SEM) and Multi-Group
Path Diagrams
Description: Provides an interactive workflow for visualizing structural equation modeling (SEM), multi-group path diagrams, and network diagrams in R. Users can directly manipulate nodes and edges to create publication-quality figures while maintaining statistical model integrity. Supports integration with 'lavaan', 'OpenMx', 'tidySEM', and 'blavaan' etc. Features include parameter-based aesthetic mapping, generative AI assistance, and complete reproducibility by exporting metadata for script-based workflows.
Author: Seung Hyun Min [aut, cre]
Maintainer: Seung Hyun Min <seung.min@mail.mcgill.ca>
Diff between ggsem versions 0.9.7 dated 2026-01-08 and 0.9.8 dated 2026-01-17
DESCRIPTION | 10 ++--- MD5 | 20 +++++------ R/ggsem_app.R | 2 - R/ggsem_launch.R | 2 - R/ggsem_silent.R | 20 ++++++++++- R/metadata_to_ggplot.R | 27 +++++++++++++-- R/utils_graph.R | 2 - README.md | 5 +- inst/shiny/app.R | 80 +++++++++++++++++++++++++++++++++++----------- man/ggsem_silent.Rd | 2 - man/metadata_to_ggplot.Rd | 2 - 11 files changed, 125 insertions(+), 47 deletions(-)
Title: R6-Based ML Survival Learners for 'mlexperiments'
Description: Enhances 'mlexperiments'
<https://CRAN.R-project.org/package=mlexperiments> with additional
machine learning ('ML') learners for survival analysis. The package
provides R6-based survival learners for the following algorithms:
'glmnet' <https://CRAN.R-project.org/package=glmnet>, 'ranger'
<https://CRAN.R-project.org/package=ranger>, 'xgboost'
<https://CRAN.R-project.org/package=xgboost>, and 'rpart'
<https://CRAN.R-project.org/package=rpart>. These can be used directly
with the 'mlexperiments' R package.
Author: Lorenz A. Kapsner [cre, aut, cph]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between mlsurvlrnrs versions 0.0.7 dated 2025-12-04 and 0.0.8 dated 2026-01-17
DESCRIPTION | 16 +- MD5 | 84 +++++------ R/learner_surv_coxph_cox.R | 114 ++++++++------- R/learner_surv_glmnet_cox.R | 169 ++++++++++++----------- R/learner_surv_ranger_cox.R | 182 +++++++++++++------------ R/learner_surv_rpart_cox.R | 169 ++++++++++++----------- R/learner_surv_xgboost_aft.R | 149 ++++++++++---------- R/learner_surv_xgboost_cox.R | 149 ++++++++++---------- R/surv_c_index.R | 17 +- R/zzz.R | 6 inst/doc/mlsurvlrnrs_glmnet_survival.R | 79 ++++++---- inst/doc/mlsurvlrnrs_glmnet_survival.html | 139 ++++++++++--------- inst/doc/mlsurvlrnrs_glmnet_survival.qmd | 79 ++++++---- inst/doc/mlsurvlrnrs_ranger_survival.R | 4 inst/doc/mlsurvlrnrs_ranger_survival.html | 6 inst/doc/mlsurvlrnrs_ranger_survival.qmd | 4 inst/doc/mlsurvlrnrs_rpart_survival.R | 65 +++++--- inst/doc/mlsurvlrnrs_rpart_survival.html | 111 ++++++++------- inst/doc/mlsurvlrnrs_rpart_survival.qmd | 65 +++++--- inst/doc/mlsurvlrnrs_xgboost_survival_aft.R | 6 inst/doc/mlsurvlrnrs_xgboost_survival_aft.html | 8 - inst/doc/mlsurvlrnrs_xgboost_survival_aft.qmd | 6 inst/doc/mlsurvlrnrs_xgboost_survival_cox.R | 20 +- inst/doc/mlsurvlrnrs_xgboost_survival_cox.html | 68 ++++----- inst/doc/mlsurvlrnrs_xgboost_survival_cox.qmd | 20 +- man/LearnerSurvCoxPHCox.Rd | 114 ++++++++------- man/LearnerSurvGlmnetCox.Rd | 133 +++++++++--------- man/LearnerSurvRangerCox.Rd | 139 ++++++++++--------- man/LearnerSurvRpartCox.Rd | 129 +++++++++-------- man/LearnerSurvXgboostAft.Rd | 153 +++++++++++---------- man/LearnerSurvXgboostCox.Rd | 153 +++++++++++---------- man/c_index.Rd | 17 +- tests/testthat/test-surv_coxph_cox.R | 76 +++++----- tests/testthat/test-surv_glmnet_cox.R | 80 +++++----- tests/testthat/test-surv_ranger_cox.R | 91 ++++++------ tests/testthat/test-surv_rpart_cox.R | 90 ++++++------ tests/testthat/test-surv_xgboost_aft.R | 13 + tests/testthat/test-surv_xgboost_cox.R | 13 + vignettes/mlsurvlrnrs_glmnet_survival.qmd | 79 ++++++---- vignettes/mlsurvlrnrs_ranger_survival.qmd | 4 vignettes/mlsurvlrnrs_rpart_survival.qmd | 65 +++++--- vignettes/mlsurvlrnrs_xgboost_survival_aft.qmd | 6 vignettes/mlsurvlrnrs_xgboost_survival_cox.qmd | 20 +- 43 files changed, 1685 insertions(+), 1425 deletions(-)
Title: Multiple Imputation Through 'XGBoost'
Description: Multiple imputation using 'XGBoost', subsampling, and predictive mean
matching as described in Deng and Lumley (2024)
<doi:10.1080/10618600.2023.2252501>. The package supports various types of
variables, offers flexible settings, and enables saving an imputation model to impute
new data. Data processing and memory usage have been optimised to speed up
the imputation process.
Author: Yongshi Deng [aut, cre] ,
Thomas Lumley [ths]
Maintainer: Yongshi Deng <agnes.yongshideng@gmail.com>
Diff between mixgb versions 2.0.3 dated 2025-12-07 and 2.2.3 dated 2026-01-17
mixgb-2.0.3/mixgb/R/data_clean.R |only mixgb-2.0.3/mixgb/R/nhanes3_newborn.R |only mixgb-2.0.3/mixgb/R/utils-pipe.R |only mixgb-2.0.3/mixgb/data/nhanes3_newborn.rda |only mixgb-2.0.3/mixgb/man/data_clean.Rd |only mixgb-2.0.3/mixgb/man/nhanes3_newborn.Rd |only mixgb-2.0.3/mixgb/man/pipe.Rd |only mixgb-2.2.3/mixgb/DESCRIPTION | 12 mixgb-2.2.3/mixgb/MD5 | 92 +++--- mixgb-2.2.3/mixgb/NAMESPACE | 6 mixgb-2.2.3/mixgb/NEWS.md | 17 + mixgb-2.2.3/mixgb/R/check_data.R |only mixgb-2.2.3/mixgb/R/createNA.R | 22 - mixgb-2.2.3/mixgb/R/data_preprocess.R | 9 mixgb-2.2.3/mixgb/R/globals.R | 5 mixgb-2.2.3/mixgb/R/impute_each.R | 187 ++++++------- mixgb-2.2.3/mixgb/R/impute_new.R | 103 +++---- mixgb-2.2.3/mixgb/R/initial_imp.R | 6 mixgb-2.2.3/mixgb/R/initial_impnew.R | 16 - mixgb-2.2.3/mixgb/R/mixgb-package.R | 19 - mixgb-2.2.3/mixgb/R/mixgb.R | 324 ++++++++++++----------- mixgb-2.2.3/mixgb/R/mixgb_cv.R | 18 - mixgb-2.2.3/mixgb/R/mixgb_save.R | 28 - mixgb-2.2.3/mixgb/R/mixgb_xgb_save.R | 32 -- mixgb-2.2.3/mixgb/R/newborn.R |only mixgb-2.2.3/mixgb/R/nhanes3.R | 14 mixgb-2.2.3/mixgb/R/save_vars.R | 17 - mixgb-2.2.3/mixgb/R/save_yhatobs.R | 142 ++++------ mixgb-2.2.3/mixgb/R/show_var.R | 32 +- mixgb-2.2.3/mixgb/R/validation.R | 238 +++++++++++++++- mixgb-2.2.3/mixgb/data/newborn.rda |only mixgb-2.2.3/mixgb/data/nhanes3.rda |binary mixgb-2.2.3/mixgb/inst/CITATION | 2 mixgb-2.2.3/mixgb/inst/doc/Imputing-newdata.R | 36 +- mixgb-2.2.3/mixgb/inst/doc/Imputing-newdata.Rmd | 56 ++- mixgb-2.2.3/mixgb/inst/doc/Imputing-newdata.html | 122 ++++---- mixgb-2.2.3/mixgb/inst/doc/Using-mixgb.R | 19 - mixgb-2.2.3/mixgb/inst/doc/Using-mixgb.Rmd | 76 ++--- mixgb-2.2.3/mixgb/inst/doc/Using-mixgb.html | 292 ++++++++++---------- mixgb-2.2.3/mixgb/man/check_data.Rd |only mixgb-2.2.3/mixgb/man/createNA.Rd | 10 mixgb-2.2.3/mixgb/man/default_params.Rd | 8 mixgb-2.2.3/mixgb/man/figures/logo.png |only mixgb-2.2.3/mixgb/man/impute_new.Rd | 6 mixgb-2.2.3/mixgb/man/mixgb-package.Rd | 4 mixgb-2.2.3/mixgb/man/mixgb.Rd | 6 mixgb-2.2.3/mixgb/man/mixgb_cv.Rd | 6 mixgb-2.2.3/mixgb/man/newborn.Rd |only mixgb-2.2.3/mixgb/man/nhanes3.Rd | 14 mixgb-2.2.3/mixgb/man/show_var.Rd | 22 - mixgb-2.2.3/mixgb/tests |only mixgb-2.2.3/mixgb/vignettes/Imputing-newdata.Rmd | 56 ++- mixgb-2.2.3/mixgb/vignettes/Using-mixgb.Rmd | 76 ++--- 53 files changed, 1172 insertions(+), 978 deletions(-)
Title: Additive Profile Clustering Algorithms
Description: Obtain overlapping clustering models for object-by-variable data
matrices using the Additive Profile Clustering (ADPROCLUS) method.
Also contains the low dimensional ADPROCLUS method
for simultaneous dimension reduction and overlapping clustering.
For reference see Depril, Van Mechelen, Mirkin (2008)
<doi:10.1016/j.csda.2008.04.014> and Depril, Van Mechelen, Wilderjans
(2012) <doi:10.1007/s00357-012-9112-5>.
Author: Henry Heppe [aut, cre, cph],
Julian Rossbroich [aut],
Jeffrey Durieux [aut],
Tom Wilderjans [aut]
Maintainer: Henry Heppe <heppe.henry@gmail.com>
Diff between adproclus versions 2.0.0 dated 2024-08-17 and 2.0.1 dated 2026-01-17
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 5 +++++ README.md | 8 +++++--- man/figures/README-example_3-1.png |binary man/figures/README-example_3-2.png |binary man/figures/README-example_3-3.png |binary tests/testthat/test-visualize.R | 2 +- 8 files changed, 21 insertions(+), 14 deletions(-)
Title: Create Table Summaries and Export Neat Tables to 'Excel'
Description: A high-level interface for creating and exporting summary tables to
'Excel'. Built on 'dplyr' and 'openxlsx', it provides tools for generating
one-way to n-way tables, and summarizing multiple response questions
and question blocks. Tables are exported with native 'Excel' formatting,
including titles, footnotes, and basic styling options.
Author: Nicholas Hilderson [aut, cre, cph]
Maintainer: Nicholas Hilderson <nhilderson.code@gmail.com>
Diff between xlr versions 1.1.0 dated 2026-01-14 and 1.1.1 dated 2026-01-17
DESCRIPTION | 8 +- MD5 | 39 +++++----- NAMESPACE | 1 NEWS.md | 6 + R/build_multiple_response_table.R | 22 ++--- R/remove_NA.R |only R/xlr_doc.R | 1 man/remove_NA.Rd |only tests/testthat/_output_excel_snaps/add_TOC_to_workbook.xlsx |binary tests/testthat/_output_excel_snaps/add_TOC_to_workbook_old_workbook.xlsx |binary tests/testthat/_output_excel_snaps/column_widths.xlsx |binary tests/testthat/_output_excel_snaps/create_table_of_contents.xlsx |binary tests/testthat/_output_excel_snaps/data_to_worksheet.xlsx |binary tests/testthat/_output_excel_snaps/data_to_worksheet_data_table.xlsx |binary tests/testthat/_output_excel_snaps/data_to_worksheet_data_table_name.xlsx |binary tests/testthat/_output_excel_snaps/dataframe_to_sheet.xlsx |binary tests/testthat/_output_excel_snaps/xlr_table_to_sheet.xlsx |binary tests/testthat/_output_excel_snaps/xlr_table_to_workbook.xlsx |binary tests/testthat/_output_excel_snaps/xlr_table_to_workbook_TOC.xlsx |binary tests/testthat/_output_excel_snaps/xlr_table_to_workbook_old_wb.xlsx |binary tests/testthat/_output_excel_snaps/xlr_table_to_workbook_old_wb_2.xlsx |binary tests/testthat/test-remove_NA.R |only 22 files changed, 43 insertions(+), 34 deletions(-)
Title: Designing and Weighting Survey Samples
Description: Functions and datasets to support Valliant, Dever, and Kreuter (2018), <doi:10.1007/978-3-319-93632-1>, "Practical Tools for Designing and Weighting Survey Samples". Contains functions for sample size calculation for survey samples using stratified or clustered one-, two-, and three-stage sample designs, and single-stage audit sample designs. Functions are included that will group geographic units accounting for distances apart and measures of size. Other functions compute variance components for multistage designs, sample sizes in two-phase designs, and a stopping rule for ending data collection. A number of example data sets are included.
Author: Richard Valliant [aut, cre],
Jill A. Dever [ctb],
Frauke Kreuter [ctb],
George Zipf [aut]
Maintainer: Richard Valliant <valliant@umich.edu>
Diff between PracTools versions 1.7 dated 2025-09-29 and 1.7.5 dated 2026-01-17
DESCRIPTION | 14 ++-- MD5 | 58 ++++++++--------- NEWS.md | 4 + R/deff.R | 8 +- R/deffCR.R | 117 +++++++++++++++++++++++++++++------- R/quad_roots.R | 1 build/vignette.rds |binary data/Domainy1y2.RData |binary data/MDarea.popA.RData |binary data/TPV.RData |binary data/Test_Data_US.RData |binary data/ThirdGrade.RData |binary data/hospital.RData |binary data/labor.RData |binary data/mibrfss.RData |binary data/nhis.RData |binary data/nhis.large.RData |binary data/nhispart.RData |binary data/smho.N874.RData |binary data/smho98.RData |binary inst/doc/Design-effects.html | 4 - inst/doc/Distance-and-MOS-PSUs.html | 4 - inst/doc/SampStop.html | 4 - inst/doc/Singlestage-samsize.html | 4 - inst/doc/Varcomps-multistage.html | 4 - man/SampStop.Rd | 1 man/deff.Rd | 46 ++++++++------ man/deffCR.Rd | 69 ++++++++++++++------- man/nEdgeSRS.Rd | 7 +- man/wtd.moments.Rd | 14 +++- 30 files changed, 239 insertions(+), 120 deletions(-)
Title: High-Performance Geocoding using 'photon'
Description: Features unstructured, structured and reverse geocoding using the
'photon' geocoding API <https://photon.komoot.io/>.
Facilitates the setup of local 'photon' instances to enable offline
geocoding.
Author: Jonas Lieth [aut, cre, cph]
Maintainer: Jonas Lieth <jslth@outlook.com>
Diff between photon versions 0.7.4 dated 2025-10-29 and 0.7.4-1 dated 2026-01-17
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NEWS.md | 5 +++++ R/download-db.R | 2 +- R/geocode.R | 2 +- R/new_photon.R | 11 +++++------ R/reverse.R | 2 +- R/utils.R | 11 +++++++++++ tests/testthat/test-setup.R | 1 + tests/testthat/test-utils.R | 2 +- 10 files changed, 40 insertions(+), 24 deletions(-)
Title: PLINK 2 Binary (.pgen) Reader
Description: A thin wrapper over PLINK 2's core libraries which provides an R
interface for reading .pgen files. A minimal .pvar loader is also
included. Chang et al. (2015) \doi{10.1186/s13742-015-0047-8}.
Author: Christopher Chang [aut, cre],
Eric Biggers [ctb, cph] ,
Yann Collet [ctb] ,
Meta Platforms, Inc. [cph] ,
Evan Nemerson [ctb, cph] ,
Przemyslaw Skibinski [ctb] ,
Nick Terrell [ctb]
Maintainer: Christopher Chang <chrchang@alumni.caltech.edu>
Diff between pgenlibr versions 0.5.3 dated 2025-06-25 and 0.5.4 dated 2026-01-17
DESCRIPTION | 8 +- MD5 | 72 +++++++++--------- build/partial.rdb |binary configure | 18 ++-- configure.ac | 2 inst/include/include/pgenlib_ffi_support.h | 2 inst/include/include/pgenlib_misc.cc | 48 +++++++++++- inst/include/include/pgenlib_misc.h | 11 +- inst/include/include/pgenlib_read.cc | 2 inst/include/include/pgenlib_read.h | 2 inst/include/include/pgenlib_write.cc | 2 inst/include/include/pgenlib_write.h | 4 - inst/include/include/plink2_base.cc | 60 +++++++++++---- inst/include/include/plink2_base.h | 116 +++++++++++++++-------------- inst/include/include/plink2_bgzf.cc | 2 inst/include/include/plink2_bgzf.h | 2 inst/include/include/plink2_bitmap.cc | 2 inst/include/include/plink2_bitmap.h | 2 inst/include/include/plink2_bits.h | 10 ++ inst/include/include/plink2_fmath.cc | 2 inst/include/include/plink2_fmath.h | 2 inst/include/include/plink2_htable.cc | 6 - inst/include/include/plink2_htable.h | 2 inst/include/include/plink2_memory.cc | 2 inst/include/include/plink2_memory.h | 2 inst/include/include/plink2_stats.cc | 17 ++-- inst/include/include/plink2_stats.h | 2 inst/include/include/plink2_string.cc | 25 +++++- inst/include/include/plink2_string.h | 52 +++---------- inst/include/include/plink2_text.cc | 10 +- inst/include/include/plink2_text.h | 2 inst/include/include/plink2_thread.cc | 19 ++-- inst/include/include/plink2_thread.h | 40 +--------- inst/include/include/plink2_zstfile.cc | 2 inst/include/include/plink2_zstfile.h | 2 inst/include/include/pvar_ffi_support.cc | 4 - inst/include/include/pvar_ffi_support.h | 2 37 files changed, 306 insertions(+), 252 deletions(-)
Title: Fixed Effects Counterfactual Estimators
Description: Provides tools for estimating causal effects in panel data using counterfactual methods, as well as other modern DID estimators. It is designed for causal panel analysis with binary treatments under the parallel trends assumption. The package supports scenarios where treatments can switch on and off and allows for limited carryover effects. It includes several imputation estimators, such as Gsynth (Xu 2017), linear factor models, and the matrix completion method. Detailed methodology is described in Liu, Wang, and Xu (2024) <doi:10.48550/arXiv.2107.00856> and Chiu et al. (2025) <doi:10.48550/arXiv.2309.15983>. Optionally integrates with the "HonestDiDFEct" package for sensitivity analyses compatible with imputation estimators. "HonestDiDFEct" is not on CRAN but can be obtained from <https://github.com/lzy318/HonestDiDFEct>.
Author: Licheng Liu [aut],
Ziyi Liu [aut],
Ye Wang [aut],
Yiqing Xu [aut, cre],
Tianzhu Qin [aut],
Shiyun Hu [aut],
Rivka Lipkovitz [aut]
Maintainer: Yiqing Xu <yiqingxu@stanford.edu>
Diff between fect versions 2.0.5 dated 2025-08-25 and 2.1.0 dated 2026-01-17
DESCRIPTION | 33 MD5 | 53 NAMESPACE | 3 R/RcppExports.R | 68 R/boot.R | 3392 +++++++++++----- R/cfe.R |only R/default.R | 2673 ++++++++---- R/did_wrapper.R | 2 R/esplot.R | 16 R/fect_gsynth.R | 16 R/interFE.R | 380 - R/plot.R | 251 + R/plot_return.R |only R/polynomial.R | 2 man/fect.Rd | 16 man/plot.fect.Rd | 10 src/RcppExports.cpp | 537 +- src/auxiliary.cpp | 50 src/binary_qr.cpp | 37 src/binary_sub.cpp | 39 src/binary_svd.cpp | 18 src/cfe.cpp |only src/cfe_sub.cpp |only src/fe_sub.cpp | 148 src/fect.h | 96 src/ife.cpp | 331 - src/ife_sub.cpp | 328 - src/mc.cpp | 344 - tests/testthat/test-gsynth-parametric-group-att-align.R |only tests/testthat/test-plot-fect.R | 9 30 files changed, 5740 insertions(+), 3112 deletions(-)
Title: Automatic Fixed Rank Kriging
Description: Automatic fixed rank kriging for (irregularly located)
spatial data using a class of basis functions with multi-resolution features
and ordered in terms of their resolutions. The model parameters are estimated
by maximum likelihood (ML) and the number of basis functions is determined
by Akaike's information criterion (AIC). For spatial data with either one
realization or independent replicates, the ML estimates and AIC are efficiently
computed using their closed-form expressions when no missing value occurs. Details
regarding the basis function construction, parameter estimation, and AIC calculation
can be found in Tzeng and Huang (2018) <doi:10.1080/00401706.2017.1345701>. For
data with missing values, the ML estimates are obtained using the expectation-
maximization algorithm. Apart from the number of basis functions, there are
no other tuning parameters, making the method fully automatic. Users can also
include a stationary structure in the spatial covariance, which utilizes
' [...truncated...]
Author: ShengLi Tzeng [aut, cre],
Hsin-Cheng Huang [aut],
Wen-Ting Wang [ctb],
Douglas Nychka [ctb]
Maintainer: ShengLi Tzeng <slt.cmu@gmail.com>
This is a re-admission after prior archival of version 1.4.3 dated 2021-03-12
Diff between autoFRK versions 1.4.3 dated 2021-03-12 and 1.4.4 dated 2026-01-17
autoFRK-1.4.3/autoFRK/NEWS.md |only autoFRK-1.4.3/autoFRK/README.md |only autoFRK-1.4.4/autoFRK/DESCRIPTION | 26 + autoFRK-1.4.4/autoFRK/MD5 | 16 - autoFRK-1.4.4/autoFRK/R/autoFRK.R | 122 ++++---- autoFRK-1.4.4/autoFRK/R/helper.R | 420 +++++++++++++++--------------- autoFRK-1.4.4/autoFRK/src/Makevars | 1 autoFRK-1.4.4/autoFRK/src/Makevars.win | 1 autoFRK-1.4.4/autoFRK/src/RcppExports.cpp | 5 autoFRK-1.4.4/autoFRK/src/autoFRK.cpp | 197 ++++++++------ 10 files changed, 429 insertions(+), 359 deletions(-)
Title: Application Directories: Determine Where to Save Data, Caches,
and Logs
Description: An easy way to determine which directories on the users
computer you should use to save data, caches and logs. A port of
Python's 'Appdirs' (<https://github.com/ActiveState/appdirs>) to R.
Author: Hadley Wickham [trl, cre, cph],
Sridhar Ratnakumar [aut],
Trent Mick [aut],
ActiveState [cph] ,
Eddy Petrisor [ctb],
Trevor Davis [trl, aut] ,
Gabor Csardi [ctb],
Gregory Jefferis [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between rappdirs versions 0.3.3 dated 2021-01-31 and 0.3.4 dated 2026-01-17
rappdirs-0.3.3/rappdirs/R/appdir.r |only rappdirs-0.3.3/rappdirs/R/cache.r |only rappdirs-0.3.3/rappdirs/R/data.r |only rappdirs-0.3.3/rappdirs/R/log.r |only rappdirs-0.3.3/rappdirs/R/rappdirs-package.r |only rappdirs-0.3.3/rappdirs/R/utils.r |only rappdirs-0.3.3/rappdirs/tests/testthat/test-appdir.r |only rappdirs-0.3.3/rappdirs/tests/testthat/test-cache.r |only rappdirs-0.3.3/rappdirs/tests/testthat/test-data.r |only rappdirs-0.3.3/rappdirs/tests/testthat/test-log.r |only rappdirs-0.3.3/rappdirs/tests/testthat/test-utils.r |only rappdirs-0.3.4/rappdirs/DESCRIPTION | 76 ++++++---------- rappdirs-0.3.4/rappdirs/LICENSE | 4 rappdirs-0.3.4/rappdirs/MD5 | 50 +++++----- rappdirs-0.3.4/rappdirs/NEWS.md | 4 rappdirs-0.3.4/rappdirs/R/appdir.R |only rappdirs-0.3.4/rappdirs/R/cache.R |only rappdirs-0.3.4/rappdirs/R/data.R |only rappdirs-0.3.4/rappdirs/R/log.R |only rappdirs-0.3.4/rappdirs/R/rappdirs-package.R |only rappdirs-0.3.4/rappdirs/R/utils.R |only rappdirs-0.3.4/rappdirs/README.md | 35 +++++-- rappdirs-0.3.4/rappdirs/man/app_dir.Rd | 2 rappdirs-0.3.4/rappdirs/man/rappdirs-package.Rd | 16 +-- rappdirs-0.3.4/rappdirs/man/site_data_dir.Rd | 2 rappdirs-0.3.4/rappdirs/man/user_cache_dir.Rd | 2 rappdirs-0.3.4/rappdirs/man/user_data_dir.Rd | 4 rappdirs-0.3.4/rappdirs/man/user_log_dir.Rd | 4 rappdirs-0.3.4/rappdirs/src/init.c | 2 rappdirs-0.3.4/rappdirs/tests/testthat.R | 8 + rappdirs-0.3.4/rappdirs/tests/testthat/_snaps/appdir.md | 1 rappdirs-0.3.4/rappdirs/tests/testthat/_snaps/utils.md | 11 ++ rappdirs-0.3.4/rappdirs/tests/testthat/test-appdir.R |only rappdirs-0.3.4/rappdirs/tests/testthat/test-cache.R |only rappdirs-0.3.4/rappdirs/tests/testthat/test-data.R |only rappdirs-0.3.4/rappdirs/tests/testthat/test-log.R |only rappdirs-0.3.4/rappdirs/tests/testthat/test-utils.R |only 37 files changed, 119 insertions(+), 102 deletions(-)
Title: Fast 'match()' Function
Description: Package providing a fast match() replacement for cases
that require repeated look-ups. It is slightly faster that R's
built-in match() function on first match against a table, but
extremely fast on any subsequent lookup as it keeps the hash
table in memory.
Author: Simon Urbanek [aut, cre, cph]
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between fastmatch versions 1.1-6 dated 2024-12-23 and 1.1-8 dated 2026-01-17
DESCRIPTION | 15 ++++++++------- MD5 | 23 ++++++++++++----------- NAMESPACE | 2 +- NEWS | 36 +++++++++++++++++++++++++++++++++++- R/ctapply.R | 2 +- R/fastmatch.R | 3 +++ man/ctapply.Rd | 22 ++++++++++++++++++---- man/fmatch.Rd | 11 +++++++---- src/common.h | 2 ++ src/ctapply.c | 56 +++++++++++++++++++++++++++++++++++++------------------- src/fasthash.c | 52 ++++++++++++++++++++++++---------------------------- src/fastmatch.c | 46 ++++++++++++++++++++++------------------------ src/rcompat.h |only 13 files changed, 170 insertions(+), 100 deletions(-)
Title: Bayesian Additive Regression Trees
Description: An advanced implementation of Bayesian Additive Regression Trees with expanded features for data analysis and visualization.
Author: Adam Kapelner [aut, cre] ,
Justin Bleich [aut]
Maintainer: Adam Kapelner <kapelner@qc.cuny.edu>
Diff between bartMachine versions 1.3.4.1 dated 2023-07-06 and 1.4 dated 2026-01-17
bartMachine-1.3.4.1/bartMachine/man/destroy_bart_machine.Rd |only bartMachine-1.4/bartMachine/CHANGELOG | 294 bartMachine-1.4/bartMachine/DESCRIPTION | 32 bartMachine-1.4/bartMachine/MD5 | 214 bartMachine-1.4/bartMachine/NAMESPACE | 108 bartMachine-1.4/bartMachine/R/bartMachine-package.R |only bartMachine-1.4/bartMachine/R/bartMachine.R | 411 bartMachine-1.4/bartMachine/R/bart_arrays.R | 136 bartMachine-1.4/bartMachine/R/bart_node_related_methods.R | 396 bartMachine-1.4/bartMachine/R/bart_package_builders.R | 1520 +-- bartMachine-1.4/bartMachine/R/bart_package_cross_validation.R | 278 bartMachine-1.4/bartMachine/R/bart_package_data_preprocessing.R | 307 bartMachine-1.4/bartMachine/R/bart_package_f_tests.R | 315 bartMachine-1.4/bartMachine/R/bart_package_inits.R | 258 bartMachine-1.4/bartMachine/R/bart_package_plots.R | 2143 +++-- bartMachine-1.4/bartMachine/R/bart_package_predicts.R | 679 + bartMachine-1.4/bartMachine/R/bart_package_summaries.R | 214 bartMachine-1.4/bartMachine/R/bart_package_variable_selection.R | 740 + bartMachine-1.4/bartMachine/R/data.R |only bartMachine-1.4/bartMachine/R/ggplot_globals.R |only bartMachine-1.4/bartMachine/R/zzz.R | 59 bartMachine-1.4/bartMachine/build/vignette.rds |binary bartMachine-1.4/bartMachine/inst/CITATION | 44 bartMachine-1.4/bartMachine/inst/COPYRIGHTS | 52 bartMachine-1.4/bartMachine/inst/benchmarks |only bartMachine-1.4/bartMachine/inst/doc/bartMachine.Rnw | 4124 +++++----- bartMachine-1.4/bartMachine/inst/doc/bartMachine.pdf |binary bartMachine-1.4/bartMachine/inst/java/bart_java.jar |binary bartMachine-1.4/bartMachine/inst/scripts |only bartMachine-1.4/bartMachine/java/AlgorithmTesting/DataAnalysis.java | 196 bartMachine-1.4/bartMachine/java/AlgorithmTesting/DataSetupForCSVFile.java | 238 bartMachine-1.4/bartMachine/java/AlgorithmTesting/package-info.java | 16 bartMachine-1.4/bartMachine/java/CustomLogging/LoggingOutputStream.java | 100 bartMachine-1.4/bartMachine/java/CustomLogging/StdOutErrLevel.java | 94 bartMachine-1.4/bartMachine/java/CustomLogging/SuperSimpleFormatter.java | 142 bartMachine-1.4/bartMachine/java/CustomLogging/package-info.java | 8 bartMachine-1.4/bartMachine/java/OpenSourceExtensions/MersenneTwisterFast.java | 2880 +++--- bartMachine-1.4/bartMachine/java/OpenSourceExtensions/StatUtil.java | 457 - bartMachine-1.4/bartMachine/java/OpenSourceExtensions/TDoubleHashSetAndArray.java | 1142 +- bartMachine-1.4/bartMachine/java/OpenSourceExtensions/UnorderedPair.java | 162 bartMachine-1.4/bartMachine/java/OpenSourceExtensions/package-info.java | 10 bartMachine-1.4/bartMachine/java/bartMachine/Classifier.java | 770 - bartMachine-1.4/bartMachine/java/bartMachine/StatToolbox.java | 618 - bartMachine-1.4/bartMachine/java/bartMachine/Tools.java | 740 - bartMachine-1.4/bartMachine/java/bartMachine/TreeArrayIllustration.java | 276 bartMachine-1.4/bartMachine/java/bartMachine/TreeIllustration.java | 446 - bartMachine-1.4/bartMachine/java/bartMachine/bartMachineClassification.java | 236 bartMachine-1.4/bartMachine/java/bartMachine/bartMachineClassificationMultThread.java | 128 bartMachine-1.4/bartMachine/java/bartMachine/bartMachineRegression.java | 44 bartMachine-1.4/bartMachine/java/bartMachine/bartMachineRegressionMultThread.java | 1368 +-- bartMachine-1.4/bartMachine/java/bartMachine/bartMachineTreeNode.java | 1774 ++-- bartMachine-1.4/bartMachine/java/bartMachine/bartMachine_a_base.java | 182 bartMachine-1.4/bartMachine/java/bartMachine/bartMachine_b_hyperparams.java | 528 - bartMachine-1.4/bartMachine/java/bartMachine/bartMachine_c_debug.java | 168 bartMachine-1.4/bartMachine/java/bartMachine/bartMachine_d_init.java | 184 bartMachine-1.4/bartMachine/java/bartMachine/bartMachine_e_gibbs_base.java | 336 bartMachine-1.4/bartMachine/java/bartMachine/bartMachine_f_gibbs_internal.java | 218 bartMachine-1.4/bartMachine/java/bartMachine/bartMachine_g_mh.java | 856 +- bartMachine-1.4/bartMachine/java/bartMachine/bartMachine_h_eval.java | 198 bartMachine-1.4/bartMachine/java/bartMachine/bartMachine_i_prior_cov_spec.java | 218 bartMachine-1.4/bartMachine/java/bartMachine/package-info.java | 14 bartMachine-1.4/bartMachine/man/automobile.Rd | 43 bartMachine-1.4/bartMachine/man/bartMachine-package.Rd |only bartMachine-1.4/bartMachine/man/bartMachine.Rd | 506 - bartMachine-1.4/bartMachine/man/bartMachineArr.Rd | 105 bartMachine-1.4/bartMachine/man/bartMachineCV.Rd | 190 bartMachine-1.4/bartMachine/man/bart_machine_get_posterior.Rd | 147 bartMachine-1.4/bartMachine/man/bart_machine_num_cores.Rd | 70 bartMachine-1.4/bartMachine/man/bart_predict_for_test_data.Rd | 150 bartMachine-1.4/bartMachine/man/benchmark_datasets.Rd | 48 bartMachine-1.4/bartMachine/man/calc_credible_intervals.Rd | 114 bartMachine-1.4/bartMachine/man/calc_prediction_intervals.Rd | 143 bartMachine-1.4/bartMachine/man/check_bart_error_assumptions.Rd | 101 bartMachine-1.4/bartMachine/man/cov_importance_test.Rd | 173 bartMachine-1.4/bartMachine/man/dummify_data.Rd | 87 bartMachine-1.4/bartMachine/man/extract_raw_node_data.Rd | 95 bartMachine-1.4/bartMachine/man/get_projection_weights.Rd | 166 bartMachine-1.4/bartMachine/man/get_sigsqs.Rd | 119 bartMachine-1.4/bartMachine/man/get_var_counts_over_chain.Rd | 99 bartMachine-1.4/bartMachine/man/get_var_props_over_chain.Rd | 95 bartMachine-1.4/bartMachine/man/interaction_investigator.Rd | 179 bartMachine-1.4/bartMachine/man/investigate_var_importance.Rd | 170 bartMachine-1.4/bartMachine/man/k_fold_cv.Rd | 146 bartMachine-1.4/bartMachine/man/linearity_test.Rd | 150 bartMachine-1.4/bartMachine/man/node_prediction_training_data_indices.Rd | 56 bartMachine-1.4/bartMachine/man/pd_plot.Rd | 195 bartMachine-1.4/bartMachine/man/plot_convergence_diagnostics.Rd | 122 bartMachine-1.4/bartMachine/man/plot_y_vs_yhat.Rd | 138 bartMachine-1.4/bartMachine/man/predict.bartMachine.Rd | 170 bartMachine-1.4/bartMachine/man/predict_bartMachineArr.Rd | 140 bartMachine-1.4/bartMachine/man/print.bartMachine.Rd | 98 bartMachine-1.4/bartMachine/man/rmse_by_num_trees.Rd | 133 bartMachine-1.4/bartMachine/man/set_bart_machine_num_cores.Rd | 72 bartMachine-1.4/bartMachine/man/summary.bartMachine.Rd | 119 bartMachine-1.4/bartMachine/man/var_selection_by_permute.Rd | 189 bartMachine-1.4/bartMachine/man/var_selection_by_permute_cv.Rd | 175 bartMachine-1.4/bartMachine/tests |only bartMachine-1.4/bartMachine/vignettes/bartMachine.Rnw | 4124 +++++----- bartMachine-1.4/bartMachine/vignettes/convergence_diagnostics4.pdf |binary bartMachine-1.4/bartMachine/vignettes/v70i04.bib | 586 - 100 files changed, 19234 insertions(+), 17250 deletions(-)
Title: Predictive (Classification and Regression) Models Homologator
Description: Methods to unify the different ways of creating predictive models and their different predictive formats for classification and regression. It includes methods such as K-Nearest Neighbors Schliep, K. P. (2004) <doi:10.5282/ubm/epub.1769>, Decision Trees Leo Breiman, Jerome H. Friedman, Richard A. Olshen, Charles J. Stone (2017) <doi:10.1201/9781315139470>, ADA Boosting Esteban Alfaro, Matias Gamez, Noelia García (2013) <doi:10.18637/jss.v054.i02>, Extreme Gradient Boosting Chen & Guestrin (2016) <doi:10.1145/2939672.2939785>, Random Forest Breiman (2001) <doi:10.1023/A:1010933404324>, Neural Networks Venables, W. N., & Ripley, B. D. (2002) <ISBN:0-387-95457-0>, Support Vector Machines Bennett, K. P. & Campbell, C. (2000) <doi:10.1145/380995.380999>, Bayesian Methods Gelman, A., Carlin, J. B., Stern, H. S., & Rubin, D. B. (1995) <doi:10.1201/9780429258411>, Linear Discriminant Analysis Venables, W. N., & Ripley, B. [...truncated...]
Author: Oldemar Rodriguez R. [aut, cre],
Andres Navarro D. [aut],
Ariel Arroyo S. [aut],
Diego Jimenez A. [aut],
Jennifer Lobo V. [aut]
Maintainer: Oldemar Rodriguez R. <oldemar.rodriguez@ucr.ac.cr>
Diff between traineR versions 2.2.9 dated 2025-12-18 and 2.2.10 dated 2026-01-17
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/traineR.R | 2 +- R/variables.R | 49 ++++++++++++++++++++++++++++++++++++------------- man/traineR.Rd | 2 +- 5 files changed, 45 insertions(+), 22 deletions(-)
Title: One-Dimensional Probability Distribution Support for the
'spatstat' Family
Description: Estimation of one-dimensional probability distributions
including kernel density estimation, weighted empirical cumulative
distribution functions, Kaplan-Meier and reduced-sample estimators
for right-censored data, heat kernels, kernel properties,
quantiles and integration.
Author: Adrian Baddeley [aut, cre, cph] ,
Tilman M. Davies [aut, ctb, cph] ,
Martin L. Hazelton [aut, ctb, cph] ,
Ege Rubak [aut, cph] ,
Rolf Turner [aut, cph] ,
Greg McSwiggan [ctb, cph]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.univar versions 3.1-5 dated 2025-11-17 and 3.1-6 dated 2026-01-17
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS | 14 ++++++++++++++ R/uniquemap.R | 13 +++++++------ R/unnormdensity.R | 38 +++++++++++++++++++++++++++----------- inst/doc/packagesizes.txt | 1 + inst/info/packagesizes.txt | 1 + 7 files changed, 61 insertions(+), 28 deletions(-)
More information about spatstat.univar at CRAN
Permanent link
Title: R6-Based ML Learners for 'mlexperiments'
Description: Enhances 'mlexperiments'
<https://CRAN.R-project.org/package=mlexperiments> with additional
machine learning ('ML') learners. The package provides R6-based
learners for the following algorithms: 'glmnet'
<https://CRAN.R-project.org/package=glmnet>, 'ranger'
<https://CRAN.R-project.org/package=ranger>, 'xgboost'
<https://CRAN.R-project.org/package=xgboost>, and 'lightgbm'
<https://CRAN.R-project.org/package=lightgbm>. These can be used
directly with the 'mlexperiments' R package.
Author: Lorenz A. Kapsner [cre, aut, cph]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between mllrnrs versions 0.0.7 dated 2025-12-04 and 0.0.8 dated 2026-01-17
DESCRIPTION | 12 MD5 | 122 +++---- R/learner_glmnet.R | 178 ++++++----- R/learner_lightgbm.R | 133 ++++---- R/learner_ranger.R | 172 +++++------ R/learner_xgboost.R | 138 ++++---- R/zzz.R | 6 inst/doc/mllrnrs_glmnet_binary.R | 4 inst/doc/mllrnrs_glmnet_binary.html | 6 inst/doc/mllrnrs_glmnet_binary.qmd | 4 inst/doc/mllrnrs_glmnet_multiclass.R | 4 inst/doc/mllrnrs_glmnet_multiclass.html | 6 inst/doc/mllrnrs_glmnet_multiclass.qmd | 4 inst/doc/mllrnrs_glmnet_regression.R | 4 inst/doc/mllrnrs_glmnet_regression.html | 6 inst/doc/mllrnrs_glmnet_regression.qmd | 4 inst/doc/mllrnrs_lightgbm_binary.R | 8 inst/doc/mllrnrs_lightgbm_binary.html | 10 inst/doc/mllrnrs_lightgbm_binary.qmd | 8 inst/doc/mllrnrs_lightgbm_multiclass.R | 8 inst/doc/mllrnrs_lightgbm_multiclass.html | 10 inst/doc/mllrnrs_lightgbm_multiclass.qmd | 8 inst/doc/mllrnrs_lightgbm_regression.R | 8 inst/doc/mllrnrs_lightgbm_regression.html | 10 inst/doc/mllrnrs_lightgbm_regression.qmd | 8 inst/doc/mllrnrs_ranger_binary.R | 4 inst/doc/mllrnrs_ranger_binary.html | 6 inst/doc/mllrnrs_ranger_binary.qmd | 4 inst/doc/mllrnrs_ranger_multiclass.R | 4 inst/doc/mllrnrs_ranger_multiclass.html | 6 inst/doc/mllrnrs_ranger_multiclass.qmd | 4 inst/doc/mllrnrs_ranger_regression.R | 4 inst/doc/mllrnrs_ranger_regression.html | 6 inst/doc/mllrnrs_ranger_regression.qmd | 4 inst/doc/mllrnrs_xgboost_binary.R | 141 ++++----- inst/doc/mllrnrs_xgboost_binary.html | 145 ++++----- inst/doc/mllrnrs_xgboost_binary.qmd | 143 ++++----- inst/doc/mllrnrs_xgboost_multiclass.R | 114 ++++--- inst/doc/mllrnrs_xgboost_multiclass.html | 156 +++++----- inst/doc/mllrnrs_xgboost_multiclass.qmd | 114 ++++--- inst/doc/mllrnrs_xgboost_regression.R | 133 ++++---- inst/doc/mllrnrs_xgboost_regression.html | 151 +++++---- inst/doc/mllrnrs_xgboost_regression.qmd | 135 ++++---- man/LearnerGlmnet.Rd | 106 +++--- man/LearnerLightgbm.Rd | 132 ++++---- man/LearnerRanger.Rd | 118 ++++--- man/LearnerXgboost.Rd | 137 ++++---- tests/testthat/test-binary.R | 467 ++++++++++++++---------------- tests/testthat/test-multiclass.R | 369 +++++++++++------------ tests/testthat/test-regression.R | 436 +++++++++++++--------------- vignettes/mllrnrs_glmnet_binary.qmd | 4 vignettes/mllrnrs_glmnet_multiclass.qmd | 4 vignettes/mllrnrs_glmnet_regression.qmd | 4 vignettes/mllrnrs_lightgbm_binary.qmd | 8 vignettes/mllrnrs_lightgbm_multiclass.qmd | 8 vignettes/mllrnrs_lightgbm_regression.qmd | 8 vignettes/mllrnrs_ranger_binary.qmd | 4 vignettes/mllrnrs_ranger_multiclass.qmd | 4 vignettes/mllrnrs_ranger_regression.qmd | 4 vignettes/mllrnrs_xgboost_binary.qmd | 143 ++++----- vignettes/mllrnrs_xgboost_multiclass.qmd | 114 ++++--- vignettes/mllrnrs_xgboost_regression.qmd | 135 ++++---- 62 files changed, 2246 insertions(+), 2114 deletions(-)
Title: Administrative Boundaries of Spain
Description: Administrative Boundaries of Spain at several levels
(Autonomous Communities, Provinces, Municipalities) based on the
'GISCO' 'Eurostat' database <https://ec.europa.eu/eurostat/web/gisco>
and 'CartoBase SIANE' from 'Instituto Geografico Nacional'
<https://www.ign.es/>. It also provides a 'leaflet' plugin and the
ability of downloading and processing static tiles.
Author: Diego Hernangomez [aut, cre, cph] ,
Eurostat [cph] ,
Instituto Geografico Nacional [cph] ,
Francisco J. Goerlich [ctb]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between mapSpain versions 0.10.0 dated 2024-12-15 and 1.0.0 dated 2026-01-17
mapSpain-0.10.0/mapSpain/R/esp_cache.R |only mapSpain-0.10.0/mapSpain/R/esp_cache_clear.R |only mapSpain-0.10.0/mapSpain/R/esp_check_access.R |only mapSpain-0.10.0/mapSpain/R/esp_dict.R |only mapSpain-0.10.0/mapSpain/R/esp_getTiles.R |only mapSpain-0.10.0/mapSpain/R/esp_get_can_box.R |only mapSpain-0.10.0/mapSpain/R/esp_get_capimun.R |only mapSpain-0.10.0/mapSpain/R/esp_get_ccaa.R |only mapSpain-0.10.0/mapSpain/R/esp_get_comarca.R |only mapSpain-0.10.0/mapSpain/R/esp_get_country.R |only mapSpain-0.10.0/mapSpain/R/esp_get_grid_BDN.R |only mapSpain-0.10.0/mapSpain/R/esp_get_grid_EEA.R |only mapSpain-0.10.0/mapSpain/R/esp_get_grid_ESDAC.R |only mapSpain-0.10.0/mapSpain/R/esp_get_grid_MTN.R |only mapSpain-0.10.0/mapSpain/R/esp_get_gridmap.R |only mapSpain-0.10.0/mapSpain/R/esp_get_hydrobasin.R |only mapSpain-0.10.0/mapSpain/R/esp_get_hypsobath.R |only mapSpain-0.10.0/mapSpain/R/esp_get_munic.R |only mapSpain-0.10.0/mapSpain/R/esp_get_nuts.R |only mapSpain-0.10.0/mapSpain/R/esp_get_prov.R |only mapSpain-0.10.0/mapSpain/R/esp_get_railway.R |only mapSpain-0.10.0/mapSpain/R/esp_get_rivers.R |only mapSpain-0.10.0/mapSpain/R/esp_get_roads.R |only mapSpain-0.10.0/mapSpain/R/esp_get_simplified.R |only mapSpain-0.10.0/mapSpain/R/esp_make_provider.R |only mapSpain-0.10.0/mapSpain/R/esp_move_can.R |only mapSpain-0.10.0/mapSpain/R/utils_download_sianedata.R |only mapSpain-0.10.0/mapSpain/R/utils_names.R |only mapSpain-0.10.0/mapSpain/R/utils_siane.R |only mapSpain-0.10.0/mapSpain/R/utils_tiles.R |only mapSpain-0.10.0/mapSpain/data/esp_munic.sf.rda |only mapSpain-0.10.0/mapSpain/data/esp_nuts.sf.rda |only mapSpain-0.10.0/mapSpain/data/leaflet.providersESP.df.rda |only mapSpain-0.10.0/mapSpain/data/pobmun19.rda |only mapSpain-0.10.0/mapSpain/inst/examples |only mapSpain-0.10.0/mapSpain/man/esp_detect_cache_dir.Rd |only mapSpain-0.10.0/mapSpain/man/esp_getTiles.Rd |only mapSpain-0.10.0/mapSpain/man/esp_get_country.Rd |only mapSpain-0.10.0/mapSpain/man/esp_get_rivers.Rd |only mapSpain-0.10.0/mapSpain/man/esp_get_simplified.Rd |only mapSpain-0.10.0/mapSpain/man/esp_munic.sf.Rd |only mapSpain-0.10.0/mapSpain/man/esp_nuts.sf.Rd |only mapSpain-0.10.0/mapSpain/man/leaflet.providersESP.df.Rd |only mapSpain-0.10.0/mapSpain/man/pobmun19.Rd |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_cache.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_dict.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_getTiles.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_get_can_box.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_get_capimun.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_get_ccaa.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_get_comarca.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_get_country.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_get_grid_BDN.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_get_grid_EEA.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_get_grid_ESDAC.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_get_grid_MTN.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_get_gridmap.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_get_hydrobasin.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_get_hypsobath.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_get_munic.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_get_nuts.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_get_prov.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_get_railway.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_get_rivers.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_get_roads.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_get_simplified.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_make_provider.R |only mapSpain-0.10.0/mapSpain/tests/testthat/test-esp_move_can.R |only mapSpain-1.0.0/mapSpain/DESCRIPTION | 43 - mapSpain-1.0.0/mapSpain/MD5 | 313 +++++---- mapSpain-1.0.0/mapSpain/NAMESPACE | 12 mapSpain-1.0.0/mapSpain/NEWS.md | 67 + mapSpain-1.0.0/mapSpain/R/addProviderEspTiles.R | 126 +-- mapSpain-1.0.0/mapSpain/R/data.R | 339 ++++------ mapSpain-1.0.0/mapSpain/R/esp-cache.R |only mapSpain-1.0.0/mapSpain/R/esp-check-access.R |only mapSpain-1.0.0/mapSpain/R/esp-dict.R |only mapSpain-1.0.0/mapSpain/R/esp-get-attributions.R |only mapSpain-1.0.0/mapSpain/R/esp-get-can-box.R |only mapSpain-1.0.0/mapSpain/R/esp-get-capimun.R |only mapSpain-1.0.0/mapSpain/R/esp-get-ccaa-siane.R |only mapSpain-1.0.0/mapSpain/R/esp-get-ccaa.R |only mapSpain-1.0.0/mapSpain/R/esp-get-comarca.R |only mapSpain-1.0.0/mapSpain/R/esp-get-countries-siane.R |only mapSpain-1.0.0/mapSpain/R/esp-get-grid-BDN.R |only mapSpain-1.0.0/mapSpain/R/esp-get-grid-EEA.R |only mapSpain-1.0.0/mapSpain/R/esp-get-grid-ESDAC.R |only mapSpain-1.0.0/mapSpain/R/esp-get-grid-MTN.R |only mapSpain-1.0.0/mapSpain/R/esp-get-gridmap.R |only mapSpain-1.0.0/mapSpain/R/esp-get-hydrobasin.R |only mapSpain-1.0.0/mapSpain/R/esp-get-hypsobath.R |only mapSpain-1.0.0/mapSpain/R/esp-get-landwater.R |only mapSpain-1.0.0/mapSpain/R/esp-get-munic-siane.R |only mapSpain-1.0.0/mapSpain/R/esp-get-munic.R |only mapSpain-1.0.0/mapSpain/R/esp-get-nuts.R |only mapSpain-1.0.0/mapSpain/R/esp-get-prov-siane.R |only mapSpain-1.0.0/mapSpain/R/esp-get-prov.R |only mapSpain-1.0.0/mapSpain/R/esp-get-railway.R |only mapSpain-1.0.0/mapSpain/R/esp-get-roads.R |only mapSpain-1.0.0/mapSpain/R/esp-get-simpl.R |only mapSpain-1.0.0/mapSpain/R/esp-get-spain-siane.R |only mapSpain-1.0.0/mapSpain/R/esp-get-spain.R |only mapSpain-1.0.0/mapSpain/R/esp-get-stations.R |only mapSpain-1.0.0/mapSpain/R/esp-get-tiles.R |only mapSpain-1.0.0/mapSpain/R/esp-make-provider.R |only mapSpain-1.0.0/mapSpain/R/esp-move-can.R |only mapSpain-1.0.0/mapSpain/R/esp-siane-bulk-download.R |only mapSpain-1.0.0/mapSpain/R/mapSpain-package.R | 3 mapSpain-1.0.0/mapSpain/R/sysdata.rda |binary mapSpain-1.0.0/mapSpain/R/utils-convert-names.R |only mapSpain-1.0.0/mapSpain/R/utils-country.R |only mapSpain-1.0.0/mapSpain/R/utils-dict.R |only mapSpain-1.0.0/mapSpain/R/utils-get-tiles.R |only mapSpain-1.0.0/mapSpain/R/utils-sf.R |only mapSpain-1.0.0/mapSpain/R/utils-slippy.R |only mapSpain-1.0.0/mapSpain/R/utils-url.R |only mapSpain-1.0.0/mapSpain/R/utils.R |only mapSpain-1.0.0/mapSpain/README.md | 106 +-- mapSpain-1.0.0/mapSpain/build/partial.rdb |binary mapSpain-1.0.0/mapSpain/build/vignette.rds |binary mapSpain-1.0.0/mapSpain/data/esp_codelist.rda |binary mapSpain-1.0.0/mapSpain/data/esp_nuts_2024.rda |only mapSpain-1.0.0/mapSpain/data/esp_tiles_providers.rda |binary mapSpain-1.0.0/mapSpain/data/pobmun25.rda |only mapSpain-1.0.0/mapSpain/inst/COPYRIGHTS |only mapSpain-1.0.0/mapSpain/inst/WORDLIST | 40 - mapSpain-1.0.0/mapSpain/inst/doc/imagery.html | 5 mapSpain-1.0.0/mapSpain/inst/doc/mapSpain.Rmd | 190 ++--- mapSpain-1.0.0/mapSpain/inst/doc/mapSpain.html | 266 ++++--- mapSpain-1.0.0/mapSpain/inst/schemaorg.json | 30 mapSpain-1.0.0/mapSpain/man/addProviderEspTiles.Rd | 51 - mapSpain-1.0.0/mapSpain/man/esp_check_access.Rd | 13 mapSpain-1.0.0/mapSpain/man/esp_clear_cache.Rd | 43 - mapSpain-1.0.0/mapSpain/man/esp_codelist.Rd | 59 - mapSpain-1.0.0/mapSpain/man/esp_dict.Rd | 72 +- mapSpain-1.0.0/mapSpain/man/esp_get_can_box.Rd | 176 +---- mapSpain-1.0.0/mapSpain/man/esp_get_capimun.Rd | 170 ++--- mapSpain-1.0.0/mapSpain/man/esp_get_ccaa.Rd | 179 ++--- mapSpain-1.0.0/mapSpain/man/esp_get_ccaa_siane.Rd |only mapSpain-1.0.0/mapSpain/man/esp_get_comarca.Rd | 125 +-- mapSpain-1.0.0/mapSpain/man/esp_get_countries_siane.Rd |only mapSpain-1.0.0/mapSpain/man/esp_get_grid_BDN.Rd | 101 +- mapSpain-1.0.0/mapSpain/man/esp_get_grid_EEA.Rd | 64 - mapSpain-1.0.0/mapSpain/man/esp_get_grid_ESDAC.Rd | 37 - mapSpain-1.0.0/mapSpain/man/esp_get_grid_MTN.Rd | 31 mapSpain-1.0.0/mapSpain/man/esp_get_gridmap.Rd | 69 -- mapSpain-1.0.0/mapSpain/man/esp_get_hydrobasin.Rd | 103 +-- mapSpain-1.0.0/mapSpain/man/esp_get_hypsobath.Rd | 135 +-- mapSpain-1.0.0/mapSpain/man/esp_get_landwater.Rd |only mapSpain-1.0.0/mapSpain/man/esp_get_munic.Rd | 232 +++--- mapSpain-1.0.0/mapSpain/man/esp_get_munic_siane.Rd |only mapSpain-1.0.0/mapSpain/man/esp_get_nuts.Rd | 202 +++-- mapSpain-1.0.0/mapSpain/man/esp_get_prov.Rd | 179 ++--- mapSpain-1.0.0/mapSpain/man/esp_get_prov_siane.Rd |only mapSpain-1.0.0/mapSpain/man/esp_get_railway.Rd | 110 +-- mapSpain-1.0.0/mapSpain/man/esp_get_roads.Rd | 98 +- mapSpain-1.0.0/mapSpain/man/esp_get_simpl.Rd |only mapSpain-1.0.0/mapSpain/man/esp_get_spain.Rd |only mapSpain-1.0.0/mapSpain/man/esp_get_spain_siane.Rd |only mapSpain-1.0.0/mapSpain/man/esp_get_tiles.Rd |only mapSpain-1.0.0/mapSpain/man/esp_make_provider.Rd | 30 mapSpain-1.0.0/mapSpain/man/esp_move_can.Rd | 28 mapSpain-1.0.0/mapSpain/man/esp_nuts_2024.Rd |only mapSpain-1.0.0/mapSpain/man/esp_set_cache_dir.Rd | 108 ++- mapSpain-1.0.0/mapSpain/man/esp_siane_bulk_download.Rd |only mapSpain-1.0.0/mapSpain/man/esp_tiles_providers.Rd | 35 - mapSpain-1.0.0/mapSpain/man/figures/README-giscoR-1.png |only mapSpain-1.0.0/mapSpain/man/figures/README-static-1.png |only mapSpain-1.0.0/mapSpain/man/figures/README-tile-1.png |only mapSpain-1.0.0/mapSpain/man/figures/lifecycle-deprecated.svg | 22 mapSpain-1.0.0/mapSpain/man/figures/lifecycle-experimental.svg | 22 mapSpain-1.0.0/mapSpain/man/figures/lifecycle-stable.svg | 30 mapSpain-1.0.0/mapSpain/man/figures/lifecycle-superseded.svg | 22 mapSpain-1.0.0/mapSpain/man/figures/logo.png |binary mapSpain-1.0.0/mapSpain/man/mapSpain-package.Rd | 7 mapSpain-1.0.0/mapSpain/man/pobmun25.Rd |only mapSpain-1.0.0/mapSpain/man/roxygen |only mapSpain-1.0.0/mapSpain/tests/testthat/_snaps |only mapSpain-1.0.0/mapSpain/tests/testthat/test-addProviderEspTiles.R | 16 mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-cache.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-check-access.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-dict.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-attributions.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-can-box.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-capimun.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-ccaa-siane.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-ccaa.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-comarca.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-countries-siane.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-grid-BDN.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-grid-EEA.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-grid-ESDAC.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-grid-MTN.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-gridmap.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-hydrobasin.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-hypsobath.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-landwater.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-munic-siane.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-munic.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-nuts.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-prov-siane.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-prov.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-railway.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-roads.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-simpl.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-spain-siane.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-spain.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-stations.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-get-tiles.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-make-provider.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-move-can.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-esp-siane-bulk-download.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-utils-convert-names.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-utils-country.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-utils-dict.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-utils-get-tiles.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-utils-sf.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-utils-url.R |only mapSpain-1.0.0/mapSpain/tests/testthat/test-utils.R |only mapSpain-1.0.0/mapSpain/vignettes/basic-1.png |binary mapSpain-1.0.0/mapSpain/vignettes/basic2-1.png |binary mapSpain-1.0.0/mapSpain/vignettes/basic3-1.png |binary mapSpain-1.0.0/mapSpain/vignettes/choro-1.png |binary mapSpain-1.0.0/mapSpain/vignettes/giscoR-1.png |binary mapSpain-1.0.0/mapSpain/vignettes/mapSpain.Rmd | 190 ++--- mapSpain-1.0.0/mapSpain/vignettes/thematic-1.png |binary 226 files changed, 2203 insertions(+), 2096 deletions(-)
Title: Extending 'gt' for Beautiful HTML Tables
Description: Provides additional functions for creating beautiful tables
with 'gt'. The functions are generally wrappers around boilerplate or
adding opinionated niche capabilities and helpers functions.
Author: Thomas Mock [aut, cre, cph],
Daniel D. Sjoberg [ctb]
Maintainer: Thomas Mock <j.thomasmock@gmail.com>
Diff between gtExtras versions 0.6.1 dated 2025-10-10 and 0.6.2 dated 2026-01-17
DESCRIPTION | 10 - MD5 | 178 +++++++++++++++++----------------- R/fmt_pad_num.R | 12 +- R/fmt_symbol_first.R | 40 ++++--- R/fontawesome-icons.R | 8 - R/get_row_index.R | 8 - R/gt-bar-html.R | 146 +++++++++++++++++---------- R/gt_add_divider.R | 13 +- R/gt_alert_icon.R | 31 +++-- R/gt_color_box.R | 34 ++++-- R/gt_color_rows.R | 27 ++--- R/gt_dot_bar.R | 30 ++++- R/gt_highlight_cols.R | 12 +- R/gt_highlight_rows.R | 26 +++- R/gt_hulk_color.R | 27 +++-- R/gt_image_multi_rows.R | 21 +++- R/gt_image_rows.R | 14 +- R/gt_img_circle.R | 46 ++++++-- R/gt_index.R | 7 - R/gt_pct_bar.R | 2 R/gt_plt_bar.R | 36 +++--- R/gt_plt_bullet.R | 11 +- R/gt_plt_conf_int.R | 4 R/gt_plt_dist.R | 98 +++++++++++------- R/gt_plt_dumbbell.R | 40 ++++--- R/gt_plt_percentile_dot.R | 99 +++++++++++++----- R/gt_plt_point.R | 30 +++-- R/gt_plt_sparkline.R | 2 R/gt_text_img.R | 10 + R/gt_theme_538.R | 38 ++++--- R/gt_theme_dark.R | 7 - R/gt_theme_dot_matrix.R | 32 ++++-- R/gt_theme_espn.R | 10 - R/gt_theme_excel.R | 7 - R/gt_theme_guardian.R | 18 ++- R/gt_theme_nytimes.R | 7 - R/gt_theme_pff.R | 17 ++- R/html-helpers.R | 2 R/img_header.R | 14 +- R/merge_and_stack.R | 56 +++++++--- R/pad_fn.R | 3 R/tab_style_by_grp.R | 11 +- R/two-column-layouts.R | 104 ++++++++++++++----- man/add_text_img.Rd | 2 man/fmt_pad_num.Rd | 2 man/fmt_symbol_first.Rd | 2 man/get_row_index.Rd | 8 - man/gt_add_divider.Rd | 2 man/gt_alert_icon.Rd | 2 man/gt_badge.Rd | 2 man/gt_color_box.Rd | 2 man/gt_color_rows.Rd | 8 - man/gt_fa_rank_change.Rd | 2 man/gt_fa_rating.Rd | 2 man/gt_highlight_cols.Rd | 2 man/gt_highlight_rows.Rd | 4 man/gt_hulk_col_numeric.Rd | 6 - man/gt_img_border.Rd | 2 man/gt_img_circle.Rd | 2 man/gt_img_multi_rows.Rd | 2 man/gt_img_rows.Rd | 2 man/gt_index.Rd | 2 man/gt_merge_stack.Rd | 2 man/gt_merge_stack_color.Rd | 2 man/gt_plt_bar.Rd | 2 man/gt_plt_bar_pct.Rd | 2 man/gt_plt_bar_stack.Rd | 2 man/gt_plt_bullet.Rd | 2 man/gt_plt_conf_int.Rd | 4 man/gt_plt_dist.Rd | 2 man/gt_plt_dot.Rd | 2 man/gt_plt_dumbbell.Rd | 2 man/gt_plt_percentile.Rd | 2 man/gt_plt_point.Rd | 2 man/gt_plt_sparkline.Rd | 2 man/gt_theme_538.Rd | 2 man/gt_theme_dark.Rd | 2 man/gt_theme_dot_matrix.Rd | 2 man/gt_theme_espn.Rd | 2 man/gt_theme_excel.Rd | 2 man/gt_theme_guardian.Rd | 2 man/gt_theme_nytimes.Rd | 2 man/gt_theme_pff.Rd | 2 man/gt_two_column_layout.Rd | 2 man/img_header.Rd | 2 man/pad_fn.Rd | 2 man/tab_style_by_grp.Rd | 2 tests/testthat/test-gt_pct_bar.R | 10 - tests/testthat/test-gt_plt_bar.R | 4 tests/testthat/test_test-gt_pct_bar.R | 8 - 90 files changed, 937 insertions(+), 541 deletions(-)
Title: Formula Interface to the Grammar of Graphics
Description: Provides a formula interface to 'ggplot2' graphics.
Author: Daniel Kaplan [aut],
Randall Pruim [aut, cre]
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between ggformula versions 1.0.0 dated 2025-10-06 and 1.0.1 dated 2026-01-17
DESCRIPTION | 8 MD5 | 22 NEWS.md | 4 R/zzz.R | 5 inst/doc/interactive-graphics.R | 2 inst/doc/interactive-graphics.html | 297 ++++++---- inst/doc/interactive-graphics.qmd | 16 man/gf_count.Rd | 2 man/gf_lines.Rd | 16 tests/testthat/_snaps/layer-factory/gf-bin2d1.svg | 177 ++--- tests/testthat/_snaps/layer-factory/multiple-ellipses-of-two-different-types.svg | 32 - vignettes/interactive-graphics.qmd | 16 12 files changed, 363 insertions(+), 234 deletions(-)
Title: Algorithms for Quantitative Pedology
Description: The Algorithms for Quantitative Pedology (AQP) project was started in 2009 to organize a loosely-related set of concepts and source code on the topic of soil profile visualization, aggregation, and classification into this package (aqp). Over the past 8 years, the project has grown into a suite of related R packages that enhance and simplify the quantitative analysis of soil profile data. Central to the AQP project is a new vocabulary of specialized functions and data structures that can accommodate the inherent complexity of soil profile information; freeing the scientist to focus on ideas rather than boilerplate data processing tasks <doi:10.1016/j.cageo.2012.10.020>. These functions and data structures have been extensively tested and documented, applied to projects involving hundreds of thousands of soil profiles, and deeply integrated into widely used tools such as SoilWeb <https://casoilresource.lawr.ucdavis.edu/soilweb-apps>. Components of the AQP project (aqp, soilD [...truncated...]
Author: Dylan Beaudette [aut, cre] ,
Pierre Roudier [aut, ctb],
Andrew Brown [aut, ctb],
Stephen Roecker [aut, ctb],
David Rossiter [ctb]
Maintainer: Dylan Beaudette <dylan.beaudette@usda.gov>
Diff between aqp versions 2.2-1 dated 2025-09-17 and 2.3 dated 2026-01-17
DESCRIPTION | 29 MD5 | 139 - NAMESPACE | 11 NEWS.md | 25 R/NCSP.R | 3 R/SoilProfileCollection-methods.R | 2 R/SoilProfileCollection-slice-methods.R | 6 R/accuracy_uncertainty.R | 68 R/aggregateColor.R | 16 R/aqp-label-placement-solvers.R | 96 R/aqp-package.R | 4 R/bootstrapSoilTexture.R | 8 R/col2Munsell.R | 73 R/colorContrast.R | 98 R/colorContrastPlot.R | 22 R/colorQuantiles.R | 47 R/colorVariation.R |only R/data-documentation.R | 27 R/dice.R | 6 R/equivalentMunsellChips.R | 6 R/estimateSoilColor.R | 63 R/parseMunsell.R | 16 R/plotProfileDendrogram.R | 88 R/plotSPC.R | 148 - R/previewColors.R | 2 R/quickSPC.R | 5 R/shuffle.R |only R/sketch-utils.R | 15 R/slab.R | 201 +- R/slicedHSD.R | 4 R/soilColorSignature.R | 300 ++- R/spc2mpspline.R | 245 +- R/warpHorizons.R | 96 data/munsell.rda |binary data/munsell.spectra.rda |binary data/munsell.spectra.wide.rda |binary data/spectral.reference.rda |binary data/traditionalColorNames.rda |binary inst/doc/Introduction-to-SoilProfileCollection-Objects.R | 4 inst/doc/Introduction-to-SoilProfileCollection-Objects.Rmd | 9 inst/doc/Introduction-to-SoilProfileCollection-Objects.html | 1182 ++++++------ inst/doc/Munsell-color-conversion.html | 4 inst/doc/NCSP.html | 8 inst/doc/aqp-overview.Rmd | 7 inst/doc/aqp-overview.html | 13 inst/doc/label-placement.html | 36 man/bootstrapSoilTexture.Rd | 2 man/colorChart.Rd | 2 man/colorContrast.Rd | 13 man/colorVariation.Rd |only man/dot-colorSig2PerceptualDistMat.Rd |only man/dot-detectColorSpec.Rd |only man/mu_confusion_matrix.Rd |only man/plotMultipleSPC.Rd | 2 man/plotProfileDendrogram.Rd | 24 man/shuffle.Rd |only man/slab.Rd | 130 - man/soilColorSignature.Rd | 83 man/soil_minerals.Rd | 27 man/spc2mpspline-SoilProfileCollection-method.Rd | 82 man/warpHorizons.Rd | 64 tests/testthat/Rplots.pdf |binary tests/testthat/test-color-conversion.R | 76 tests/testthat/test-color-signature.R | 114 - tests/testthat/test-colorContrast.R | 27 tests/testthat/test-estimateSoilColor.R | 8 tests/testthat/test-fix-find-overlap.R | 80 tests/testthat/test-quickSPC.R | 8 tests/testthat/test-shuffle.R |only tests/testthat/test-slab.R | 92 tests/testthat/test-spc2mpspline.R | 19 tests/testthat/test-spec2Munsell.R | 28 tests/testthat/test-warpHorizons.R |only vignettes/Introduction-to-SoilProfileCollection-Objects.Rmd | 9 vignettes/aqp-overview.Rmd | 7 75 files changed, 2607 insertions(+), 1422 deletions(-)