Title: Tidy Analysis Tools for Mortality, Fertility, Migration and
Population Data
Description: Analysing vital statistics based on tools
consistent with the tidyverse. Tools are provided for data visualization,
life table calculations, computing net migration numbers, Lee-Carter
modelling; functional data modelling and forecasting.
Author: Rob Hyndman [aut, cre, cph] ,
Sixian Tang [aut] ,
Miles McBain [ctb] ,
Mitchell O'Hara-Wild [ctb]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between vital versions 2.0.1 dated 2025-10-05 and 2.0.2 dated 2026-01-18
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 4 ++++ R/smooth.R | 4 ++-- README.md | 8 ++++---- build/vignette.rds |binary inst/doc/intro.Rmd | 2 +- inst/doc/intro.html | 19 +++++++++---------- inst/doc/population_forecasting.html | 14 ++++++-------- man/figures/vital-hex.png |binary vignettes/intro.Rmd | 2 +- 11 files changed, 40 insertions(+), 39 deletions(-)
Title: Joint Feature Screening via Sparse MLE
Description: Feature screening is a powerful tool in processing ultrahigh dimensional data. It attempts to screen out most irrelevant features in preparation for a more elaborate analysis. Xu and Chen (2014)<doi:10.1080/01621459.2013.879531> proposed an effective screening method SMLE, which naturally incorporates the joint effects among features in the screening process. This package provides an efficient implementation of SMLE-screening for high-dimensional linear, logistic, and Poisson models. The package also provides a function for conducting accurate post-screening feature selection based on an iterative hard-thresholding procedure and a user-specified selection criterion. Zang, Xu, and Burkett (2025)<doi:10.18637/jss.v115.i08>.
Author: Qianxiang Zang [aut, cre],
Chen Xu [aut],
Kelly Burkett [aut]
Maintainer: Qianxiang Zang <SMLEmaintainer@gmail.com>
Diff between SMLE versions 2.2-2 dated 2025-01-28 and 2.2-3 dated 2026-01-18
DESCRIPTION | 10 MD5 | 13 build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 21 inst/doc/SMLE_Tutorial.R | 114 ++-- inst/doc/SMLE_Tutorial.html | 1217 ++++++++++++++++++++++---------------------- man/SMLE-package.Rd | 11 8 files changed, 706 insertions(+), 680 deletions(-)
Title: Scale Mixture of Skew-Normal Linear Mixed Models
Description: It fits scale mixture of skew-normal linear mixed models using either an expectation–maximization (EM) type algorithm or its accelerated version (Damped Anderson Acceleration with Epsilon Monotonicity, DAAREM), including some possibilities for modeling the within-subject dependence <doi:10.18637/jss.v115.i07>.
Author: Fernanda L. Schumacher [aut, cre] ,
Larissa A. Matos [aut] ,
Victor H. Lachos [aut] ,
Katherine A. L. Valeriano [aut] ,
Nicholas Henderson [ctb],
Ravi Varadhan [ctb]
Maintainer: Fernanda L. Schumacher <fernandalschumacher@gmail.com>
This is a re-admission after prior archival of version 1.1.2 dated 2024-12-14
Diff between skewlmm versions 1.1.2 dated 2024-12-14 and 1.1.3 dated 2026-01-18
DESCRIPTION | 24 MD5 | 71 +- NAMESPACE | 41 - NEWS.md | 5 R/mainfunctions-sim.R | 45 - R/mainfunctions.R | 46 - R/smnCens_allfunctions.R | 1026 +++++++++++++++++++------------------- R/smnCens_prin.R | 124 ---- README.md | 92 +-- inst |only man/acfresid.Rd | 4 man/coef.Rd | 2 man/criteria.Rd | 5 man/errorVar.Rd | 2 man/figures/README-example2-1.png |binary man/figures/README-example2-3.png |binary man/fitted.SMNCens.Rd | 10 man/fixef.Rd | 2 man/healy.plot.Rd | 2 man/lmmControl.Rd | 2 man/lr.test.Rd | 2 man/mahalDist.Rd | 2 man/mahalDist.SMNCens.Rd | 13 man/plot.SMNCens.Rd | 11 man/plot.mahalDist.SMNCens.Rd | 13 man/predict.SMN.Rd | 2 man/predict.SMNCens.Rd | 19 man/predict.SMSN.Rd | 2 man/print.SMNCens.Rd | 13 man/ranef.Rd | 2 man/residuals.SMNCens.Rd | 11 man/rsmsn.clmm.Rd | 27 - man/rsmsn.lmm.Rd | 2 man/smn.clmm.Rd | 26 man/smn.lmm.Rd | 2 man/smsn.lmm.Rd | 2 man/summary.SMNCens.Rd | 11 37 files changed, 729 insertions(+), 934 deletions(-)
Title: Native Access Medical Record Retriever for High Yield Analytics
Description: A toolkit for medical records data analysis. The 'naryn'
package implements an efficient data structure for storing medical
records, and provides a set of functions for data extraction,
manipulation and analysis.
Author: Misha Hoichman [aut],
Aviezer Lifshitz [aut, cre],
Ben Gilat [aut],
Netta Mendelson-Cohen [ctb],
Rami Jaschek [ctb],
Weizmann Institute of Science [cph]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>
Diff between naryn versions 2.6.31 dated 2025-11-11 and 2.6.32 dated 2026-01-18
DESCRIPTION | 6 +++--- MD5 | 30 +++++++++++++++--------------- NEWS.md | 6 +++++- R/db.R | 3 --- R/extract.R | 5 ----- R/filter.R | 4 ---- R/time.R | 4 ---- R/track-attributes.R | 2 -- R/track-vars.R | 3 --- R/track.R | 8 -------- R/vtrack.R | 5 ----- R/zzz.R | 3 +-- inst/WORDLIST | 1 + src/EMR.h | 5 ++++- src/NRExtract.cpp | 8 ++++---- tests/testthat/test-logical_tracks.R | 1 - 16 files changed, 33 insertions(+), 61 deletions(-)
Title: Earth Observation Data Cubes from Satellite Image Collections
Description: Processing collections of Earth observation images as on-demand multispectral, multitemporal raster data cubes. Users
define cubes by spatiotemporal extent, resolution, and spatial reference system and let 'gdalcubes' automatically apply cropping, reprojection, and
resampling using the 'Geospatial Data Abstraction Library' ('GDAL'). Implemented functions on data cubes include reduction over space and time,
applying arithmetic expressions on pixel band values, moving window aggregates over time, filtering by space, time, bands, and predicates on pixel values,
exporting data cubes as 'netCDF' or 'GeoTIFF' files, plotting, and extraction from spatial and or spatiotemporal features.
All computational parts are implemented in C++, linking to the 'GDAL', 'netCDF', 'CURL', and 'SQLite' libraries.
See Appel and Pebesma (2019) <doi:10.3390/data4030092> for further details.
Author: Marius Appel [aut, cre] ,
Edzer Pebesma [ctb] ,
Roger Bivand [ctb],
Jeroen Ooms [ctb] ,
Lewis Van Winkle [cph],
Ole Christian Eidheim [cph],
Howard Hinnant [cph],
Adrian Colomitchi [cph],
Florian Dang [cph],
Paul Thompson [cph],
Tomasz Kaminski [cph] [...truncated...]
Maintainer: Marius Appel <marius.appel@hs-bochum.de>
Diff between gdalcubes versions 0.7.2 dated 2025-12-02 and 0.7.3 dated 2026-01-18
DESCRIPTION | 8 +++---- MD5 | 12 +++++------ NEWS.md | 5 ++++ configure | 26 ++++++++++++------------- configure.ac | 10 ++++----- src/gdalcubes/src/datetime.cpp | 6 +++-- src/gdalcubes/src/external/tinyexpr/tinyexpr.c | 6 ++++- 7 files changed, 42 insertions(+), 31 deletions(-)
Title: Functional Control Charts
Description: Provides functional control charts
for statistical process monitoring of functional data,
using the methods of Capezza et al. (2020) <doi:10.1002/asmb.2507>,
Centofanti et al. (2021) <doi:10.1080/00401706.2020.1753581>,
Capezza et al. (2024) <doi:10.1080/00224065.2024.2383674>,
Capezza et al. (2024) <doi:10.1080/00401706.2024.2327346>,
Centofanti et al. (2025) <doi:10.1080/00224065.2024.2430978>,
Capezza et al. (2025) <doi:10.48550/arXiv.2410.20138>.
The package is thoroughly illustrated in the paper of
Capezza et al (2023) <doi:10.1080/00224065.2023.2219012>.
Author: Christian Capezza [cre, aut],
Fabio Centofanti [aut],
Davide Forcina [aut],
Antonio Lepore [aut],
Biagio Palumbo [aut],
Alessandra Menafoglio [ctb],
Simone Vantini [ctb]
Maintainer: Christian Capezza <christian.capezza@unina.it>
This is a re-admission after prior archival of version 1.8.0 dated 2025-12-12
Diff between funcharts versions 1.8.0 dated 2025-12-12 and 1.8.1 dated 2026-01-18
DESCRIPTION | 6 MD5 | 12 NEWS.md | 4 R/00_mfd.R | 4 R/rmfcc.R | 1103 +++++++++++++++++++++++++++++++++++++++++ man/RoAMFEWMA_PhaseI.Rd |only man/RoAMFEWMA_PhaseII.Rd |only man/RoMFCC_PhaseII_casewise.Rd |only man/RoMFCC_PhaseI_casewise.Rd |only 9 files changed, 1120 insertions(+), 9 deletions(-)
Title: Estimate Crown Scorch from Terrestrial LiDAR Scans
Description: Estimates tree crown scorch from terrestrial lidar scans collected with a RIEGL vz400i. The methods follow those described in Cannon et al. (2025, Fire Ecology 21:71, <doi:10.1186/s42408-025-00420-0>).
Author: Jeffery Cannon [aut, cre],
Andrew Whelan [ctb]
Maintainer: Jeffery Cannon <Jeffery.Cannon@jonesctr.org>
Diff between CrownScorchTLS versions 0.1.0 dated 2025-12-14 and 0.1.1 dated 2026-01-18
DESCRIPTION | 6 +++--- MD5 | 17 +++++++++-------- NAMESPACE | 1 + NEWS.md |only R/TreeLS_stemPoints_methods.R | 19 +++++++++++++++++++ README.md | 4 +++- inst/doc/CrownScorchTLS-workflow.Rmd | 3 ++- inst/doc/CrownScorchTLS-workflow.html | 6 +++--- man/stemPoints.Rd | 18 ++++++++++++++++++ vignettes/CrownScorchTLS-workflow.Rmd | 3 ++- 10 files changed, 60 insertions(+), 17 deletions(-)
More information about CrownScorchTLS at CRAN
Permanent link
Title: Classification Measures when Subclasses are Involved
Description: Accuracy metrics are commonly used to assess the discriminating ability of diagnostic tests or biomarkers. Among them, metrics based on the ROC framework are particularly popular. When classification involves subclasses, the package 'CompClassMetrics' includes functions that can provide the point estimate, confidence interval as well as true values if a parametric setting is known. For more details see Nan and Tian (2025) <doi:10.1177/09622802251343600>, Nan and Tian (2023) <doi:10.1002/sim.9908>, Feng and Tian (2020) <doi:10.1177/0962280220938077> and Wang et al (2016) <doi:10.1002/sim.6843>.
Author: Nan Nan [aut, cre]
Maintainer: Nan Nan <nannan@buffalo.edu>
Diff between CompClassMetrics versions 0.1.0 dated 2025-09-03 and 1.0.0 dated 2026-01-18
CompClassMetrics-0.1.0/CompClassMetrics/R/Order_statistics.R |only CompClassMetrics-0.1.0/CompClassMetrics/data/PLCO.rda |only CompClassMetrics-0.1.0/CompClassMetrics/man/AUCofunc.Rd |only CompClassMetrics-0.1.0/CompClassMetrics/man/CVUS.calc.func.Rd |only CompClassMetrics-0.1.0/CompClassMetrics/man/F_min_given_max_partial_gamma_upper.Rd |only CompClassMetrics-0.1.0/CompClassMetrics/man/F_min_given_max_partial_normal_upper.Rd |only CompClassMetrics-0.1.0/CompClassMetrics/man/F_min_max_partial_gamma.Rd |only CompClassMetrics-0.1.0/CompClassMetrics/man/F_min_max_partial_normal.Rd |only CompClassMetrics-0.1.0/CompClassMetrics/man/F_order_r_gamma.Rd |only CompClassMetrics-0.1.0/CompClassMetrics/man/F_order_r_normal.Rd |only CompClassMetrics-0.1.0/CompClassMetrics/man/HUMC_NPCI.Rd |only CompClassMetrics-0.1.0/CompClassMetrics/man/HUMC_fourclass.Rd |only CompClassMetrics-0.1.0/CompClassMetrics/man/HUM_min.Rd |only CompClassMetrics-0.1.0/CompClassMetrics/man/HUM_standard.Rd |only CompClassMetrics-0.1.0/CompClassMetrics/man/PLCO.Rd |only CompClassMetrics-0.1.0/CompClassMetrics/man/ROCC_Surface.Rd |only CompClassMetrics-0.1.0/CompClassMetrics/man/ROCC_curve.Rd |only CompClassMetrics-0.1.0/CompClassMetrics/man/f_order_max_gamma.Rd |only CompClassMetrics-0.1.0/CompClassMetrics/man/f_order_max_normal.Rd |only CompClassMetrics-0.1.0/CompClassMetrics/man/f_order_min_gamma.Rd |only CompClassMetrics-0.1.0/CompClassMetrics/man/f_order_min_normal.Rd |only CompClassMetrics-0.1.0/CompClassMetrics/man/hum.dynamic.Rd |only CompClassMetrics-1.0.0/CompClassMetrics/DESCRIPTION | 8 - CompClassMetrics-1.0.0/CompClassMetrics/MD5 | 57 ++++----- CompClassMetrics-1.0.0/CompClassMetrics/NAMESPACE | 36 ++---- CompClassMetrics-1.0.0/CompClassMetrics/NEWS.md |only CompClassMetrics-1.0.0/CompClassMetrics/R/Empirical_est.R | 16 +- CompClassMetrics-1.0.0/CompClassMetrics/R/Orderstatistics.R |only CompClassMetrics-1.0.0/CompClassMetrics/R/PLCO.R | 2 CompClassMetrics-1.0.0/CompClassMetrics/R/Plots.R | 16 +- CompClassMetrics-1.0.0/CompClassMetrics/R/Plots2.R |only CompClassMetrics-1.0.0/CompClassMetrics/R/True_values.R | 58 ++++------ CompClassMetrics-1.0.0/CompClassMetrics/data/plco.rda |only CompClassMetrics-1.0.0/CompClassMetrics/man/auco_func.Rd |only CompClassMetrics-1.0.0/CompClassMetrics/man/cdf_min_given_max_partial_upper.Rd |only CompClassMetrics-1.0.0/CompClassMetrics/man/cdf_min_max_partial.Rd |only CompClassMetrics-1.0.0/CompClassMetrics/man/cdf_order_r.Rd |only CompClassMetrics-1.0.0/CompClassMetrics/man/cvus_func.Rd |only CompClassMetrics-1.0.0/CompClassMetrics/man/f_order_max.Rd |only CompClassMetrics-1.0.0/CompClassMetrics/man/f_order_min.Rd |only CompClassMetrics-1.0.0/CompClassMetrics/man/get_max_min_permutations.Rd | 2 CompClassMetrics-1.0.0/CompClassMetrics/man/humc_dynamic.Rd |only CompClassMetrics-1.0.0/CompClassMetrics/man/humc_fourclass.Rd |only CompClassMetrics-1.0.0/CompClassMetrics/man/humc_min.Rd |only CompClassMetrics-1.0.0/CompClassMetrics/man/humc_npci.Rd |only CompClassMetrics-1.0.0/CompClassMetrics/man/humc_standard.Rd |only CompClassMetrics-1.0.0/CompClassMetrics/man/plco.Rd |only CompClassMetrics-1.0.0/CompClassMetrics/man/rocc_curve.Rd |only CompClassMetrics-1.0.0/CompClassMetrics/man/rocc_curve_emp.Rd |only CompClassMetrics-1.0.0/CompClassMetrics/man/rocc_surface.Rd |only CompClassMetrics-1.0.0/CompClassMetrics/man/rocc_surface_emp.Rd |only 51 files changed, 94 insertions(+), 101 deletions(-)
More information about CompClassMetrics at CRAN
Permanent link
Title: Communicating with AWS EC2 and ECS using AWS REST APIs
Description: Providing the functions for communicating with Amazon Web Services(AWS)
Elastic Compute Cloud(EC2) and Elastic Container Service(ECS).
The functions will have the prefix 'ecs_' or 'ec2_' depending on the class
of the API. The request will be sent via the REST API and the parameters are
given by the function argument. The credentials can be set via 'aws_set_credentials'.
The EC2 documentation can be found at <https://docs.aws.amazon.com/AWSEC2/latest/APIReference/Welcome.html>
and ECS can be found at <https://docs.aws.amazon.com/AmazonECS/latest/APIReference/Welcome.html>.
Author: Jiefei Wang [aut, cre],
Martin Morgan [aut]
Maintainer: Jiefei Wang <szwjf08@gmail.com>
Diff between aws.ecx versions 1.0.5 dated 2022-01-26 and 1.0.6 dated 2026-01-18
DESCRIPTION | 8 MD5 | 1030 NAMESPACE | 1044 NEWS | 41 R/actions-documentation.R | 50 R/api-generator-utils.R | 84 R/aws-credentials.R | 336 R/aws-rest-APIs.R | 348 R/ec2-actions.R |46565 ++++------ R/ecs-actions.R | 6422 - R/package-settings.R | 124 R/utils.R | 140 R/zzz.R | 24 README.md | 614 build/vignette.rds |binary inst/doc/quick-start-guide.Rmd | 614 inst/doc/quick-start-guide.html | 983 inst/quick-start-guide.raw.Rmd | 404 man/CommonDoc.Rd | 74 man/converter.Rd | 62 man/credentials.Rd | 194 man/ec2_accept_reserved_instances_exchange_quote.Rd | 146 man/ec2_accept_transit_gateway_multicast_domain_associations.Rd | 164 man/ec2_accept_transit_gateway_peering_attachment.Rd | 126 man/ec2_accept_transit_gateway_vpc_attachment.Rd | 122 man/ec2_accept_vpc_endpoint_connections.Rd | 142 man/ec2_accept_vpc_peering_connection.Rd | 124 man/ec2_advertise_byoip_cidr.Rd | 124 man/ec2_allocate_address.Rd | 250 man/ec2_allocate_hosts.Rd | 284 man/ec2_apply_security_groups_to_client_vpn_target_network.Rd | 168 man/ec2_assign_ipv6_addresses.Rd | 146 man/ec2_assign_private_ip_addresses.Rd | 166 man/ec2_associate_address.Rd | 246 man/ec2_associate_client_vpn_target_network.Rd | 160 man/ec2_associate_dhcp_options.Rd | 140 man/ec2_associate_enclave_certificate_iam_role.Rd | 144 man/ec2_associate_iam_instance_profile.Rd | 120 man/ec2_associate_route_table.Rd | 158 man/ec2_associate_subnet_cidr_block.Rd | 120 man/ec2_associate_transit_gateway_multicast_domain.Rd | 162 man/ec2_associate_transit_gateway_route_table.Rd | 144 man/ec2_associate_vpc_cidr_block.Rd | 208 man/ec2_attach_classic_link_vpc.Rd | 160 man/ec2_attach_internet_gateway.Rd | 146 man/ec2_attach_network_interface.Rd | 182 man/ec2_attach_volume.Rd | 160 man/ec2_attach_vpn_gateway.Rd | 140 man/ec2_authorize_client_vpn_ingress.Rd | 232 man/ec2_authorize_security_group_egress.Rd | 254 man/ec2_authorize_security_group_ingress.Rd | 342 man/ec2_bundle_instance.Rd | 156 man/ec2_cancel_bundle_task.Rd | 124 man/ec2_cancel_capacity_reservation.Rd | 122 man/ec2_cancel_conversion_task.Rd | 140 man/ec2_cancel_export_task.Rd | 108 man/ec2_cancel_import_task.Rd | 142 man/ec2_cancel_reserved_instances_listing.Rd | 98 man/ec2_cancel_spot_fleet_requests.Rd | 142 man/ec2_cancel_spot_instance_requests.Rd | 122 man/ec2_confirm_product_instance.Rd | 148 man/ec2_copy_fpga_image.Rd | 198 man/ec2_copy_image.Rd | 320 man/ec2_copy_snapshot.Rd | 362 man/ec2_create_capacity_reservation.Rd | 438 man/ec2_create_carrier_gateway.Rd | 164 man/ec2_create_client_vpn_endpoint.Rd | 460 man/ec2_create_client_vpn_route.Rd | 232 man/ec2_create_customer_gateway.Rd | 222 man/ec2_create_default_subnet.Rd | 130 man/ec2_create_default_vpc.Rd | 104 man/ec2_create_dhcp_options.Rd | 140 man/ec2_create_egress_only_internet_gateway.Rd | 168 man/ec2_create_fleet.Rd | 378 man/ec2_create_flow_logs.Rd | 412 man/ec2_create_fpga_image.Rd | 214 man/ec2_create_image.Rd | 258 man/ec2_create_instance_export_task.Rd | 172 man/ec2_create_internet_gateway.Rd | 122 man/ec2_create_key_pair.Rd | 144 man/ec2_create_launch_template.Rd | 210 man/ec2_create_launch_template_version.Rd | 230 man/ec2_create_local_gateway_route.Rd | 162 man/ec2_create_local_gateway_route_table_vpc_association.Rd | 160 man/ec2_create_managed_prefix_list.Rd | 228 man/ec2_create_nat_gateway.Rd | 198 man/ec2_create_network_acl.Rd | 140 man/ec2_create_network_acl_entry.Rd | 302 man/ec2_create_network_insights_path.Rd | 252 man/ec2_create_network_interface.Rd | 326 man/ec2_create_network_interface_permission.Rd | 174 man/ec2_create_placement_group.Rd | 182 man/ec2_create_reserved_instances_listing.Rd | 162 man/ec2_create_route.Rd | 376 man/ec2_create_route_table.Rd | 140 man/ec2_create_security_group.Rd | 204 man/ec2_create_snapshot.Rd | 204 man/ec2_create_snapshots.Rd | 226 man/ec2_create_spot_datafeed_subscription.Rd | 150 man/ec2_create_subnet.Rd | 260 man/ec2_create_tags.Rd | 150 man/ec2_create_traffic_mirror_filter.Rd | 160 man/ec2_create_traffic_mirror_filter_rule.Rd | 316 man/ec2_create_traffic_mirror_session.Rd | 296 man/ec2_create_traffic_mirror_target.Rd | 200 man/ec2_create_transit_gateway.Rd | 158 man/ec2_create_transit_gateway_connect.Rd | 160 man/ec2_create_transit_gateway_connect_peer.Rd | 228 man/ec2_create_transit_gateway_multicast_domain.Rd | 158 man/ec2_create_transit_gateway_peering_attachment.Rd | 196 man/ec2_create_transit_gateway_prefix_list_reference.Rd | 180 man/ec2_create_transit_gateway_route.Rd | 182 man/ec2_create_transit_gateway_route_table.Rd | 142 man/ec2_create_transit_gateway_vpc_attachment.Rd | 200 man/ec2_create_volume.Rd | 450 man/ec2_create_vpc.Rd | 272 man/ec2_create_vpc_endpoint.Rd | 330 man/ec2_create_vpc_endpoint_connection_notification.Rd | 198 man/ec2_create_vpc_endpoint_service_configuration.Rd | 222 man/ec2_create_vpc_peering_connection.Rd | 206 man/ec2_create_vpn_connection.Rd | 216 man/ec2_create_vpn_connection_route.Rd | 116 man/ec2_create_vpn_gateway.Rd | 186 man/ec2_delete_carrier_gateway.Rd | 122 man/ec2_delete_client_vpn_endpoint.Rd | 126 man/ec2_delete_client_vpn_route.Rd | 170 man/ec2_delete_customer_gateway.Rd | 126 man/ec2_delete_dhcp_options.Rd | 130 man/ec2_delete_egress_only_internet_gateway.Rd | 124 man/ec2_delete_fleets.Rd | 156 man/ec2_delete_flow_logs.Rd | 128 man/ec2_delete_fpga_image.Rd | 124 man/ec2_delete_internet_gateway.Rd | 126 man/ec2_delete_key_pair.Rd | 142 man/ec2_delete_launch_template.Rd | 148 man/ec2_delete_launch_template_versions.Rd | 174 man/ec2_delete_local_gateway_route.Rd | 146 man/ec2_delete_local_gateway_route_table_vpc_association.Rd | 124 man/ec2_delete_managed_prefix_list.Rd | 126 man/ec2_delete_nat_gateway.Rd | 130 man/ec2_delete_network_acl.Rd | 126 man/ec2_delete_network_acl_entry.Rd | 162 man/ec2_delete_network_insights_analysis.Rd | 124 man/ec2_delete_network_insights_path.Rd | 124 man/ec2_delete_network_interface.Rd | 126 man/ec2_delete_network_interface_permission.Rd | 150 man/ec2_delete_placement_group.Rd | 128 man/ec2_delete_queued_reserved_instances.Rd | 126 man/ec2_delete_route.Rd | 182 man/ec2_delete_route_table.Rd | 128 man/ec2_delete_security_group.Rd | 142 man/ec2_delete_snapshot.Rd | 122 man/ec2_delete_spot_datafeed_subscription.Rd | 106 man/ec2_delete_subnet.Rd | 126 man/ec2_delete_tags.Rd | 162 man/ec2_delete_traffic_mirror_filter.Rd | 122 man/ec2_delete_traffic_mirror_filter_rule.Rd | 124 man/ec2_delete_traffic_mirror_session.Rd | 124 man/ec2_delete_traffic_mirror_target.Rd | 122 man/ec2_delete_transit_gateway.Rd | 124 man/ec2_delete_transit_gateway_connect.Rd | 126 man/ec2_delete_transit_gateway_connect_peer.Rd | 124 man/ec2_delete_transit_gateway_multicast_domain.Rd | 124 man/ec2_delete_transit_gateway_peering_attachment.Rd | 124 man/ec2_delete_transit_gateway_prefix_list_reference.Rd | 144 man/ec2_delete_transit_gateway_route.Rd | 144 man/ec2_delete_transit_gateway_route_table.Rd | 128 man/ec2_delete_transit_gateway_vpc_attachment.Rd | 124 man/ec2_delete_volume.Rd | 122 man/ec2_delete_vpc.Rd | 132 man/ec2_delete_vpc_endpoint_connection_notifications.Rd | 126 man/ec2_delete_vpc_endpoint_service_configurations.Rd | 130 man/ec2_delete_vpc_endpoints.Rd | 122 man/ec2_delete_vpc_peering_connection.Rd | 132 man/ec2_delete_vpn_connection.Rd | 122 man/ec2_delete_vpn_connection_route.Rd | 124 man/ec2_delete_vpn_gateway.Rd | 130 man/ec2_deprovision_byoip_cidr.Rd | 124 man/ec2_deregister_image.Rd | 122 man/ec2_deregister_instance_event_notification_attributes.Rd | 126 man/ec2_deregister_transit_gateway_multicast_group_members.Rd | 162 man/ec2_deregister_transit_gateway_multicast_group_sources.Rd | 164 man/ec2_describe_account_attributes.Rd | 122 man/ec2_describe_addresses.Rd | 212 man/ec2_describe_addresses_attribute.Rd | 168 man/ec2_describe_aggregate_id_format.Rd | 104 man/ec2_describe_availability_zones.Rd | 244 man/ec2_describe_bundle_tasks.Rd | 178 man/ec2_describe_byoip_cidrs.Rd | 132 man/ec2_describe_capacity_reservations.Rd | 308 man/ec2_describe_carrier_gateways.Rd | 200 man/ec2_describe_classic_link_instances.Rd | 218 man/ec2_describe_client_vpn_authorization_rules.Rd | 184 man/ec2_describe_client_vpn_connections.Rd | 186 man/ec2_describe_client_vpn_endpoints.Rd | 180 man/ec2_describe_client_vpn_routes.Rd | 184 man/ec2_describe_client_vpn_target_networks.Rd | 204 man/ec2_describe_coip_pools.Rd | 188 man/ec2_describe_conversion_tasks.Rd | 122 man/ec2_describe_customer_gateways.Rd | 184 man/ec2_describe_dhcp_options.Rd | 202 man/ec2_describe_egress_only_internet_gateways.Rd | 192 man/ec2_describe_elastic_gpus.Rd | 198 man/ec2_describe_export_image_tasks.Rd | 172 man/ec2_describe_export_tasks.Rd | 120 man/ec2_describe_fast_snapshot_restores.Rd | 170 man/ec2_describe_fleet_history.Rd | 190 man/ec2_describe_fleet_instances.Rd | 178 man/ec2_describe_fleets.Rd | 198 man/ec2_describe_flow_logs.Rd | 218 man/ec2_describe_fpga_image_attribute.Rd | 140 man/ec2_describe_fpga_images.Rd | 236 man/ec2_describe_host_reservation_offerings.Rd | 212 man/ec2_describe_host_reservations.Rd | 180 man/ec2_describe_hosts.Rd | 188 man/ec2_describe_iam_instance_profile_associations.Rd | 156 man/ec2_describe_id_format.Rd | 116 man/ec2_describe_identity_id_format.Rd | 134 man/ec2_describe_image_attribute.Rd | 150 man/ec2_describe_images.Rd | 314 man/ec2_describe_import_image_tasks.Rd | 170 man/ec2_describe_import_snapshot_tasks.Rd | 168 man/ec2_describe_instance_attribute.Rd | 154 man/ec2_describe_instance_credit_specifications.Rd | 186 man/ec2_describe_instance_event_notification_attributes.Rd | 108 man/ec2_describe_instance_status.Rd | 274 man/ec2_describe_instance_type_offerings.Rd | 186 man/ec2_describe_instance_types.Rd | 356 man/ec2_describe_instances.Rd | 550 man/ec2_describe_internet_gateways.Rd | 208 man/ec2_describe_ipv6_pools.Rd | 190 man/ec2_describe_key_pairs.Rd | 190 man/ec2_describe_launch_template_versions.Rd | 310 man/ec2_describe_launch_templates.Rd | 214 man/ec2_describe_local_gateway_route_table_virtual_interface_group_associations.Rd | 192 man/ec2_describe_local_gateway_route_table_vpc_associations.Rd | 188 man/ec2_describe_local_gateway_route_tables.Rd | 188 man/ec2_describe_local_gateway_virtual_interface_groups.Rd | 184 man/ec2_describe_local_gateway_virtual_interfaces.Rd | 170 man/ec2_describe_local_gateways.Rd | 194 man/ec2_describe_managed_prefix_lists.Rd | 178 man/ec2_describe_moving_addresses.Rd | 194 man/ec2_describe_nat_gateways.Rd | 200 man/ec2_describe_network_acls.Rd | 242 man/ec2_describe_network_insights_analyses.Rd | 238 man/ec2_describe_network_insights_paths.Rd | 184 man/ec2_describe_network_interface_attribute.Rd | 142 man/ec2_describe_network_interface_permissions.Rd | 168 man/ec2_describe_network_interfaces.Rd | 326 man/ec2_describe_placement_groups.Rd | 200 man/ec2_describe_prefix_lists.Rd | 176 man/ec2_describe_principal_id_format.Rd | 166 man/ec2_describe_public_ipv4_pools.Rd | 166 man/ec2_describe_regions.Rd | 178 man/ec2_describe_reserved_instances.Rd | 272 man/ec2_describe_reserved_instances_listings.Rd | 152 man/ec2_describe_reserved_instances_modifications.Rd | 174 man/ec2_describe_reserved_instances_offerings.Rd | 460 man/ec2_describe_route_tables.Rd | 270 man/ec2_describe_scheduled_instance_availability.Rd | 248 man/ec2_describe_scheduled_instances.Rd | 206 man/ec2_describe_security_group_references.Rd | 128 man/ec2_describe_security_groups.Rd | 318 man/ec2_describe_snapshot_attribute.Rd | 140 man/ec2_describe_snapshots.Rd | 282 man/ec2_describe_spot_datafeed_subscription.Rd | 110 man/ec2_describe_spot_fleet_instances.Rd | 154 man/ec2_describe_spot_fleet_request_history.Rd | 190 man/ec2_describe_spot_fleet_requests.Rd | 152 man/ec2_describe_spot_instance_requests.Rd | 326 man/ec2_describe_spot_price_history.Rd | 284 man/ec2_describe_stale_security_groups.Rd | 158 man/ec2_describe_subnets.Rd | 240 man/ec2_describe_tags.Rd | 188 man/ec2_describe_traffic_mirror_filters.Rd | 178 man/ec2_describe_traffic_mirror_sessions.Rd | 202 man/ec2_describe_traffic_mirror_targets.Rd | 190 man/ec2_describe_transit_gateway_attachments.Rd | 214 man/ec2_describe_transit_gateway_connect_peers.Rd | 182 man/ec2_describe_transit_gateway_connects.Rd | 192 man/ec2_describe_transit_gateway_multicast_domains.Rd | 184 man/ec2_describe_transit_gateway_peering_attachments.Rd | 210 man/ec2_describe_transit_gateway_route_tables.Rd | 200 man/ec2_describe_transit_gateway_vpc_attachments.Rd | 190 man/ec2_describe_transit_gateways.Rd | 224 man/ec2_describe_volume_attribute.Rd | 140 man/ec2_describe_volume_status.Rd | 230 man/ec2_describe_volumes.Rd | 256 man/ec2_describe_volumes_modifications.Rd | 204 man/ec2_describe_vpc_attribute.Rd | 142 man/ec2_describe_vpc_classic_link.Rd | 168 man/ec2_describe_vpc_classic_link_dns_support.Rd | 142 man/ec2_describe_vpc_endpoint_connection_notifications.Rd | 190 man/ec2_describe_vpc_endpoint_connections.Rd | 180 man/ec2_describe_vpc_endpoint_service_configurations.Rd | 206 man/ec2_describe_vpc_endpoint_service_permissions.Rd | 188 man/ec2_describe_vpc_endpoint_services.Rd | 200 man/ec2_describe_vpc_endpoints.Rd | 214 man/ec2_describe_vpc_peering_connections.Rd | 230 man/ec2_describe_vpcs.Rd | 240 man/ec2_describe_vpn_connections.Rd | 206 man/ec2_describe_vpn_gateways.Rd | 192 man/ec2_detach_classic_link_vpc.Rd | 146 man/ec2_detach_internet_gateway.Rd | 146 man/ec2_detach_network_interface.Rd | 168 man/ec2_detach_volume.Rd | 188 man/ec2_detach_vpn_gateway.Rd | 140 man/ec2_disable_ebs_encryption_by_default.Rd | 104 man/ec2_disable_fast_snapshot_restores.Rd | 146 man/ec2_disable_transit_gateway_route_table_propagation.Rd | 144 man/ec2_disable_vgw_route_propagation.Rd | 144 man/ec2_disable_vpc_classic_link.Rd | 126 man/ec2_disable_vpc_classic_link_dns_support.Rd | 98 man/ec2_disassociate_address.Rd | 140 man/ec2_disassociate_client_vpn_target_network.Rd | 142 man/ec2_disassociate_enclave_certificate_iam_role.Rd | 154 man/ec2_disassociate_iam_instance_profile.Rd | 98 man/ec2_disassociate_route_table.Rd | 124 man/ec2_disassociate_subnet_cidr_block.Rd | 104 man/ec2_disassociate_transit_gateway_multicast_domain.Rd | 160 man/ec2_disassociate_transit_gateway_route_table.Rd | 142 man/ec2_disassociate_vpc_cidr_block.Rd | 98 man/ec2_enable_ebs_encryption_by_default.Rd | 104 man/ec2_enable_fast_snapshot_restores.Rd | 144 man/ec2_enable_transit_gateway_route_table_propagation.Rd | 144 man/ec2_enable_vgw_route_propagation.Rd | 150 man/ec2_enable_volume_io.Rd | 126 man/ec2_enable_vpc_classic_link.Rd | 138 man/ec2_enable_vpc_classic_link_dns_support.Rd | 98 man/ec2_export_client_vpn_client_certificate_revocation_list.Rd | 124 man/ec2_export_client_vpn_client_configuration.Rd | 132 man/ec2_export_image.Rd | 244 man/ec2_export_transit_gateway_routes.Rd | 200 man/ec2_get_associated_enclave_certificate_iam_roles.Rd | 136 man/ec2_get_associated_ipv6_pool_cidrs.Rd | 150 man/ec2_get_capacity_reservation_usage.Rd | 168 man/ec2_get_coip_pool_usage.Rd | 206 man/ec2_get_console_output.Rd | 144 man/ec2_get_console_screenshot.Rd | 140 man/ec2_get_default_credit_specification.Rd | 122 man/ec2_get_ebs_default_kms_key_id.Rd | 104 man/ec2_get_ebs_encryption_by_default.Rd | 104 man/ec2_get_groups_for_capacity_reservation.Rd | 154 man/ec2_get_host_reservation_purchase_preview.Rd | 118 man/ec2_get_launch_template_data.Rd | 122 man/ec2_get_managed_prefix_list_associations.Rd | 154 man/ec2_get_managed_prefix_list_entries.Rd | 170 man/ec2_get_password_data.Rd | 122 man/ec2_get_reserved_instances_exchange_quote.Rd | 152 man/ec2_get_transit_gateway_attachment_propagations.Rd | 180 man/ec2_get_transit_gateway_multicast_domain_associations.Rd | 190 man/ec2_get_transit_gateway_prefix_list_references.Rd | 202 man/ec2_get_transit_gateway_route_table_associations.Rd | 184 man/ec2_get_transit_gateway_route_table_propagations.Rd | 184 man/ec2_import_client_vpn_client_certificate_revocation_list.Rd | 144 man/ec2_import_image.Rd | 448 man/ec2_import_instance.Rd | 174 man/ec2_import_key_pair.Rd | 160 man/ec2_import_snapshot.Rd | 320 man/ec2_import_volume.Rd | 174 man/ec2_modify_address_attribute.Rd | 142 man/ec2_modify_availability_zone_group.Rd | 148 man/ec2_modify_capacity_reservation.Rd | 246 man/ec2_modify_client_vpn_endpoint.Rd | 350 man/ec2_modify_default_credit_specification.Rd | 144 man/ec2_modify_ebs_default_kms_key_id.Rd | 160 man/ec2_modify_fleet.Rd | 180 man/ec2_modify_fpga_image_attribute.Rd | 272 man/ec2_modify_hosts.Rd | 202 man/ec2_modify_id_format.Rd | 140 man/ec2_modify_identity_id_format.Rd | 162 man/ec2_modify_image_attribute.Rd | 278 man/ec2_modify_instance_attribute.Rd | 458 man/ec2_modify_instance_capacity_reservation_attributes.Rd | 148 man/ec2_modify_instance_credit_specification.Rd | 142 man/ec2_modify_instance_event_start_time.Rd | 162 man/ec2_modify_instance_metadata_options.Rd | 236 man/ec2_modify_instance_placement.Rd | 218 man/ec2_modify_launch_template.Rd | 192 man/ec2_modify_managed_prefix_list.Rd | 194 man/ec2_modify_network_interface_attribute.Rd | 218 man/ec2_modify_reserved_instances.Rd | 136 man/ec2_modify_snapshot_attribute.Rd | 214 man/ec2_modify_spot_fleet_request.Rd | 180 man/ec2_modify_subnet_attribute.Rd | 202 man/ec2_modify_traffic_mirror_filter_network_services.Rd | 160 man/ec2_modify_traffic_mirror_filter_rule.Rd | 316 man/ec2_modify_traffic_mirror_session.Rd | 274 man/ec2_modify_transit_gateway.Rd | 164 man/ec2_modify_transit_gateway_prefix_list_reference.Rd | 180 man/ec2_modify_transit_gateway_vpc_attachment.Rd | 184 man/ec2_modify_volume.Rd | 284 man/ec2_modify_volume_attribute.Rd | 140 man/ec2_modify_vpc_attribute.Rd | 164 man/ec2_modify_vpc_endpoint.Rd | 310 man/ec2_modify_vpc_endpoint_connection_notification.Rd | 164 man/ec2_modify_vpc_endpoint_service_configuration.Rd | 260 man/ec2_modify_vpc_endpoint_service_permissions.Rd | 164 man/ec2_modify_vpc_peering_connection_options.Rd | 158 man/ec2_modify_vpc_tenancy.Rd | 138 man/ec2_modify_vpn_connection.Rd | 178 man/ec2_modify_vpn_connection_options.Rd | 214 man/ec2_modify_vpn_tunnel_certificate.Rd | 142 man/ec2_modify_vpn_tunnel_options.Rd | 166 man/ec2_monitor_instances.Rd | 122 man/ec2_move_address_to_vpc.Rd | 136 man/ec2_provision_byoip_cidr.Rd | 208 man/ec2_purchase_host_reservation.Rd | 214 man/ec2_purchase_reserved_instances_offering.Rd | 182 man/ec2_purchase_scheduled_instances.Rd | 142 man/ec2_reboot_instances.Rd | 122 man/ec2_register_image.Rd | 386 man/ec2_register_instance_event_notification_attributes.Rd | 122 man/ec2_register_transit_gateway_multicast_group_members.Rd | 160 man/ec2_register_transit_gateway_multicast_group_sources.Rd | 160 man/ec2_reject_transit_gateway_multicast_domain_associations.Rd | 164 man/ec2_reject_transit_gateway_peering_attachment.Rd | 124 man/ec2_reject_transit_gateway_vpc_attachment.Rd | 122 man/ec2_reject_vpc_endpoint_connections.Rd | 142 man/ec2_reject_vpc_peering_connection.Rd | 134 man/ec2_release_address.Rd | 174 man/ec2_release_hosts.Rd | 98 man/ec2_replace_iam_instance_profile_association.Rd | 116 man/ec2_replace_network_acl_association.Rd | 142 man/ec2_replace_network_acl_entry.Rd | 294 man/ec2_replace_route.Rd | 382 man/ec2_replace_route_table_association.Rd | 140 man/ec2_replace_transit_gateway_route.Rd | 180 man/ec2_report_instance_status.Rd | 248 man/ec2_request_spot_fleet.Rd | 122 man/ec2_request_spot_instances.Rd | 450 man/ec2_reset_address_attribute.Rd | 142 man/ec2_reset_ebs_default_kms_key_id.Rd | 104 man/ec2_reset_fpga_image_attribute.Rd | 144 man/ec2_reset_image_attribute.Rd | 140 man/ec2_reset_instance_attribute.Rd | 146 man/ec2_reset_network_interface_attribute.Rd | 142 man/ec2_reset_snapshot_attribute.Rd | 142 man/ec2_restore_address_to_classic.Rd | 130 man/ec2_restore_managed_prefix_list_version.Rd | 162 man/ec2_revoke_client_vpn_ingress.Rd | 182 man/ec2_revoke_security_group_egress.Rd | 254 man/ec2_revoke_security_group_ingress.Rd | 306 man/ec2_run_instances.Rd | 1040 man/ec2_run_scheduled_instances.Rd | 182 man/ec2_search_local_gateway_routes.Rd | 170 man/ec2_search_transit_gateway_multicast_groups.Rd | 212 man/ec2_search_transit_gateway_routes.Rd | 208 man/ec2_send_diagnostic_interrupt.Rd | 122 man/ec2_start_instances.Rd | 138 man/ec2_start_network_insights_analysis.Rd | 184 man/ec2_start_vpc_endpoint_service_private_dns_verification.Rd | 122 man/ec2_stop_instances.Rd | 178 man/ec2_terminate_client_vpn_connections.Rd | 166 man/ec2_terminate_instances.Rd | 128 man/ec2_unassign_ipv6_addresses.Rd | 118 man/ec2_unassign_private_ip_addresses.Rd | 122 man/ec2_unmonitor_instances.Rd | 128 man/ec2_update_security_group_rule_descriptions_egress.Rd | 166 man/ec2_update_security_group_rule_descriptions_ingress.Rd | 166 man/ec2_withdraw_byoip_cidr.Rd | 122 man/ecs_create_capacity_provider.Rd | 186 man/ecs_create_cluster.Rd | 300 man/ecs_create_service.Rd | 854 man/ecs_create_task_set.Rd | 448 man/ecs_delete_account_setting.Rd | 140 man/ecs_delete_attributes.Rd | 128 man/ecs_delete_capacity_provider.Rd | 100 man/ecs_delete_cluster.Rd | 98 man/ecs_delete_service.Rd | 142 man/ecs_delete_task_set.Rd | 166 man/ecs_deregister_container_instance.Rd | 170 man/ecs_deregister_task_definition.Rd | 100 man/ecs_describe_capacity_providers.Rd | 166 man/ecs_describe_clusters.Rd | 166 man/ecs_describe_container_instances.Rd | 154 man/ecs_describe_services.Rd | 150 man/ecs_describe_task_definition.Rd | 124 man/ecs_describe_task_sets.Rd | 168 man/ecs_describe_tasks.Rd | 148 man/ecs_discover_poll_endpoint.Rd | 128 man/ecs_list_account_settings.Rd | 194 man/ecs_list_attributes.Rd | 196 man/ecs_list_clusters.Rd | 106 man/ecs_list_container_instances.Rd | 188 man/ecs_list_services.Rd | 164 man/ecs_list_tags_for_resource.Rd | 104 man/ecs_list_task_definition_families.Rd | 160 man/ecs_list_task_definitions.Rd | 190 man/ecs_list_tasks.Rd | 268 man/ecs_put_account_setting.Rd | 162 man/ecs_put_account_setting_default.Rd | 142 man/ecs_put_attributes.Rd | 134 man/ecs_put_cluster_capacity_providers.Rd | 198 man/ecs_register_container_instance.Rd | 304 man/ecs_register_task_definition.Rd | 708 man/ecs_run_task.Rd | 556 man/ecs_start_task.Rd | 380 man/ecs_stop_task.Rd | 146 man/ecs_submit_attachment_state_changes.Rd | 118 man/ecs_submit_container_state_change.Rd | 226 man/ecs_submit_task_state_change.Rd | 246 man/ecs_tag_resource.Rd | 168 man/ecs_untag_resource.Rd | 122 man/ecs_update_capacity_provider.Rd | 120 man/ecs_update_cluster_settings.Rd | 124 man/ecs_update_container_agent.Rd | 122 man/ecs_update_container_instances_state.Rd | 148 man/ecs_update_service.Rd | 428 man/ecs_update_service_primary_task_set.Rd | 152 man/ecs_update_task_set.Rd | 160 man/packageSettings.Rd | 92 tests/testthat.R | 8 tests/testthat/test_ec2.R | 118 tests/testthat/test_ecs.R | 156 vignettes/quick-start-guide.Rmd | 614 516 files changed, 75589 insertions(+), 75750 deletions(-)
Title: Functions for Discordant Kinship Modeling
Description: Functions for discordant kinship modeling (and other sibling-based quasi-experimental designs). Contains data restructuring functions and functions for generating biometrically informed data for kin pairs. See [Garrison and Rodgers, 2016 <doi:10.1016/j.intell.2016.08.008>], [Sims, Trattner, and Garrison, 2024 <doi:10.3389/fpsyg.2024.1430978>] for empirical examples, and [Garrison and colleagues for theoretical work <doi:10.1101/2025.08.25.25334395>].
Author: S. Mason Garrison [aut, cre, cph] ,
Jonathan Trattner [aut] ,
Yoo Ri Hwang [aut],
Cermet Ream [ctb]
Maintainer: S. Mason Garrison <garrissm@wfu.edu>
Diff between discord versions 1.2.4.1 dated 2025-06-10 and 1.3 dated 2026-01-18
discord-1.2.4.1/discord/inst/doc/Power.R |only discord-1.2.4.1/discord/inst/doc/Power.Rmd |only discord-1.2.4.1/discord/inst/doc/Power.html |only discord-1.2.4.1/discord/tests/testthat/test-discord_regression_arguments.R |only discord-1.2.4.1/discord/vignettes/Power.Rmd |only discord-1.3/discord/DESCRIPTION | 22 discord-1.3/discord/MD5 | 97 - discord-1.3/discord/NEWS.md | 12 discord-1.3/discord/R/func_discord_data.R | 15 discord-1.3/discord/R/func_discord_regression.R | 17 discord-1.3/discord/R/func_kinsim.R | 56 discord-1.3/discord/R/helpers_regression.R | 4 discord-1.3/discord/R/helpers_simulation.R | 35 discord-1.3/discord/R/legacy.R | 30 discord-1.3/discord/README.md | 229 ++- discord-1.3/discord/build/partial.rdb |binary discord-1.3/discord/build/vignette.rds |binary discord-1.3/discord/inst/doc/categorical_predictors.R | 4 discord-1.3/discord/inst/doc/categorical_predictors.Rmd | 89 - discord-1.3/discord/inst/doc/categorical_predictors.html | 161 +- discord-1.3/discord/inst/doc/full_data_workflow.R |only discord-1.3/discord/inst/doc/full_data_workflow.Rmd |only discord-1.3/discord/inst/doc/full_data_workflow.html |only discord-1.3/discord/inst/doc/links.R | 66 discord-1.3/discord/inst/doc/links.Rmd | 93 + discord-1.3/discord/inst/doc/links.html | 449 +++++- discord-1.3/discord/inst/doc/plots.R | 359 ++++- discord-1.3/discord/inst/doc/plots.Rmd | 444 +++++- discord-1.3/discord/inst/doc/plots.html | 674 ++++++---- discord-1.3/discord/inst/doc/regression.R | 3 discord-1.3/discord/inst/doc/regression.Rmd | 29 discord-1.3/discord/inst/doc/regression.html | 358 +++-- discord-1.3/discord/man/check_sibling_order_ram_optimized.Rd | 2 discord-1.3/discord/man/discord-package.Rd | 4 discord-1.3/discord/man/discord_between_model.Rd | 4 discord-1.3/discord/man/discord_data.Rd | 6 discord-1.3/discord/man/discord_data_fast.Rd | 4 discord-1.3/discord/man/discord_data_ram_optimized.Rd | 4 discord-1.3/discord/man/discord_regression.Rd | 4 discord-1.3/discord/man/discord_regression_legacy.Rd | 2 discord-1.3/discord/man/figures/hex.png |binary discord-1.3/discord/man/figures/logo.png |binary discord-1.3/discord/man/kinsim.Rd | 3 discord-1.3/discord/man/kinsim_internal.Rd | 8 discord-1.3/discord/tests/testthat/test-discord_regression.R | 287 +--- discord-1.3/discord/tests/testthat/test-discord_regression_estimates.R |only discord-1.3/discord/tests/testthat/test-discord_regression_results.R |only discord-1.3/discord/tests/testthat/test-kinsim.R | 21 discord-1.3/discord/tests/testthat/test-new-legacy.R | 20 discord-1.3/discord/vignettes/categorical_predictors.Rmd | 89 - discord-1.3/discord/vignettes/full_data_workflow.Rmd |only discord-1.3/discord/vignettes/full_data_workflow.docx |only discord-1.3/discord/vignettes/full_data_workflow_revised.docx |only discord-1.3/discord/vignettes/links.Rmd | 93 + discord-1.3/discord/vignettes/plots.Rmd | 444 +++++- discord-1.3/discord/vignettes/regression.Rmd | 29 56 files changed, 3004 insertions(+), 1266 deletions(-)
Title: Dynamic Factor Models
Description: Efficient estimation of Dynamic Factor Models using the Expectation Maximization (EM) algorithm
or Two-Step (2S) estimation, supporting datasets with missing data. Factors are assumed to follow a stationary VAR
process of order p. The estimation options follow advances in the econometric literature: either running the Kalman
Filter and Smoother once with initial values from PCA - 2S estimation as in Doz, Giannone and Reichlin (2011)
<doi:10.1016/j.jeconom.2011.02.012> - or via iterated Kalman Filtering and Smoothing until EM convergence - following
Doz, Giannone and Reichlin (2012) <doi:10.1162/REST_a_00225> - or using the adapted EM algorithm of Banbura and
Modugno (2014) <doi:10.1002/jae.2306>, allowing arbitrary patterns of missing data. The implementation makes heavy
use of the 'Armadillo' 'C++' library and the 'collapse' package, providing for particularly speedy estimation.
A comprehensive set of methods supports interpretation and visualization of the model as [...truncated...]
Author: Sebastian Krantz [aut, cre],
Rytis Bagdziunas [aut],
Santtu Tikka [rev],
Eli Holmes [rev]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>
Diff between dfms versions 0.3.2 dated 2025-09-24 and 0.4.0 dated 2026-01-18
DESCRIPTION | 6 MD5 | 26 +-- NEWS.md | 10 + R/DFM.R | 81 +++++++++- R/EMBM_MQ_idio.R | 299 +++++++++++++++++++++++-------------- R/init_cond.R | 162 ++++++++++++++++++++ R/methods.R | 4 README.md | 2 inst/doc/dynamic_factor_models.pdf |binary inst/doc/introduction.R | 25 ++- inst/doc/introduction.Rmd | 40 ++++ inst/doc/introduction.html | 72 ++++++++ man/DFM.Rd | 20 ++ vignettes/introduction.Rmd | 40 ++++ 14 files changed, 643 insertions(+), 144 deletions(-)
Title: Results Tables to Bridge the Rift Between Epidemiologists and
Their Data
Description: Presentation-ready results tables for epidemiologists in an
automated, reproducible fashion. The user provides the final analytical
dataset and specifies the design of the table, with rows and/or columns
defined by exposure(s), effect modifier(s), and estimands as desired,
allowing to show descriptors and inferential estimates in one table --
bridging the rift between epidemiologists and their data, one table at a
time. See Rothman (2017) <doi:10.1007/s10654-017-0314-3>.
Author: Konrad H. Stopsack [aut, cre, cph]
Maintainer: Konrad H. Stopsack <stopsack@post.harvard.edu>
Diff between rifttable versions 0.7.1 dated 2025-06-06 and 0.7.2 dated 2026-01-18
DESCRIPTION | 8 +++--- MD5 | 36 ++++++++++++++--------------- NEWS.md | 10 ++++++++ R/survdiff_ci.R | 3 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/estimators_binary.html | 6 ++-- inst/doc/estimators_continuous.html | 6 ++-- inst/doc/estimators_survival.html | 6 ++-- inst/doc/faq.html | 23 ++---------------- inst/doc/rifttable.Rmd | 2 - inst/doc/rifttable.html | 13 +++------- inst/doc/table1.Rmd | 2 - inst/doc/table1.html | 20 ++++++---------- tests/testthat/test-missing_data.R | 14 +++++++++-- tests/testthat/test-table1_design.R | 14 +++++++++-- tests/testthat/test-time2.R | 44 ++++++++++++++++++++++++++++++++++++ vignettes/rifttable.Rmd | 2 - vignettes/table1.Rmd | 2 - 19 files changed, 130 insertions(+), 81 deletions(-)
Title: Explicitly Qualifying Namespaces by Automatically Adding 'pkg::'
to Functions
Description: Automatically adding 'pkg::' to a function, i.e. mutate()
becomes dplyr::mutate(). It is up to the user to determine which
packages should be used explicitly, whether to include base R packages
or use the functionality on selected text, a file, or a complete
directory. User friendly logging is provided in the 'RStudio' Markers
pane. Lives in the spirit of 'lintr' and 'styler'. Can also be used
for checking which packages are actually used in a project.
Author: Matthias Braun FKA Nistler [aut, cre]
Maintainer: Matthias Braun FKA Nistler <m_nistler@web.de>
Diff between origin versions 1.2.0 dated 2024-11-24 and 1.2.1 dated 2026-01-18
DESCRIPTION | 18 +++----- MD5 | 68 +++++++++++++++---------------- NEWS.md | 7 +++ R/check_pkg_usage.R | 17 ++++--- R/escape_strings.R | 2 R/exclude_local_functions.R | 38 ++++++++--------- R/fix_html_tokens.R | 7 +-- R/get_parsed_data.R | 8 +++ R/get_project_package.R | 2 R/list_files.R | 4 - R/originize.R | 3 - R/originize_file.R | 9 +--- R/originize_pkg.R | 4 - R/originize_wrap.R | 8 +-- R/print.pkg_usage.R | 4 - R/revert_parse_data.R | 8 +-- R/rmd_utils.R | 10 ++-- R/solve_fun_duplicates.R | 6 +- R/solve_local_duplicates.R | 4 - README.md | 2 build/vignette.rds |binary inst/doc/origin.html | 5 +- inst/testdata/test_script.R | 23 ++++++---- inst/testdata/testscript.csv | 12 ++--- inst/testdata/testscript2.csv | 10 ++-- inst/testdata/testscript_rmd.csv | 10 ++-- man/origin-package.Rd | 4 + tests/testthat/_snaps/check_pkg_usage.md | 5 -- tests/testthat/test-apply_changes.R | 5 -- tests/testthat/test-check_pkg_usage.R | 11 ++--- tests/testthat/test-exclude_functions.R | 4 - tests/testthat/test-originize_dir.R | 12 ++--- tests/testthat/test-originize_wrap.R | 25 ++++------- tests/testthat/test-setdiff_specific.R | 4 + tests/testthat/test-zzz.R | 2 35 files changed, 187 insertions(+), 174 deletions(-)
Title: Grammar Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Geometries: geom_table(), geom_plot() and geom_grob() add insets to
plots using native data coordinates, while geom_table_npc(), geom_plot_npc()
and geom_grob_npc() do the same using "npc" coordinates through new
aesthetics "npcx" and "npcy". Statistics: select observations based on 2D
density. Positions: radial nudging away from a center point and nudging away
from a line or curve; combined stacking and nudging; combined dodging and
nudging.
Author: Pedro J. Aphalo [aut, cre] ,
Kamil Slowikowski [ctb] ,
Michal Krassowski [ctb] ,
Daniel Sabanes Bove [ctb] ,
Stella Banjo [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpp versions 0.5.9 dated 2025-06-28 and 0.6.0 dated 2026-01-18
ggpp-0.5.9/ggpp/inst/doc/nudge-examples.R |only ggpp-0.5.9/ggpp/inst/doc/nudge-examples.Rmd |only ggpp-0.5.9/ggpp/inst/doc/nudge-examples.html |only ggpp-0.5.9/ggpp/tests/testthat/_snaps/geom-table-npc |only ggpp-0.5.9/ggpp/tests/testthat/test-geom-table-npc.R |only ggpp-0.5.9/ggpp/tests/testthat/test-table_themes.R |only ggpp-0.5.9/ggpp/tests/testthat/test-ttheme-constructors.R |only ggpp-0.5.9/ggpp/tests/testthat/test-ttheme_set.R |only ggpp-0.5.9/ggpp/vignettes/nudge-examples.Rmd |only ggpp-0.6.0/ggpp/DESCRIPTION | 28 ggpp-0.6.0/ggpp/MD5 | 614 ++++------ ggpp-0.6.0/ggpp/NAMESPACE | 1 ggpp-0.6.0/ggpp/NEWS.md | 21 ggpp-0.6.0/ggpp/R/annotate.r | 26 ggpp-0.6.0/ggpp/R/geom-grob.R | 25 ggpp-0.6.0/ggpp/R/geom-label-linked.r | 45 ggpp-0.6.0/ggpp/R/geom-label-npc.r | 15 ggpp-0.6.0/ggpp/R/geom-label-pairwise.r | 20 ggpp-0.6.0/ggpp/R/geom-margin-arrow.r | 26 ggpp-0.6.0/ggpp/R/geom-margin-grob.r | 22 ggpp-0.6.0/ggpp/R/geom-margin-point.r | 20 ggpp-0.6.0/ggpp/R/geom-plot.R | 62 - 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Title: Additional Univariate and Multivariate Distributions
Description: Density, distribution function, quantile function
and random generation for a number of univariate
and multivariate distributions. This package implements the
following distributions: Bernoulli, beta-binomial, beta-negative
binomial, beta prime, Bhattacharjee, Birnbaum-Saunders,
bivariate normal, bivariate Poisson, categorical, Dirichlet,
Dirichlet-multinomial, discrete gamma, discrete Laplace,
discrete normal, discrete uniform, discrete Weibull, Frechet,
gamma-Poisson, generalized extreme value, Gompertz,
generalized Pareto, Gumbel, half-Cauchy, half-normal, half-t,
Huber density, inverse chi-squared, inverse-gamma, Kumaraswamy,
Laplace, location-scale t, logarithmic, Lomax, multivariate
hypergeometric, multinomial, negative hypergeometric,
non-standard beta, normal mixture, Poisson mixture, Pareto,
power, reparametrized beta, Rayleigh, shifted Gompertz, Skellam,
slash, triangular, truncated binomial, truncated normal,
truncated Poisson, Tukey lambda, Wald, zero-inflated binomial,
zer [...truncated...]
Author: Tymoteusz Wolodzko [aut],
Sigbert Klinke [cre]
Maintainer: Sigbert Klinke <sigbert@wiwi.hu-berlin.de>
Diff between extraDistr versions 1.10.0.1 dated 2025-12-29 and 1.10.0.2 dated 2026-01-18
DESCRIPTION | 34 +-- MD5 | 16 - NEWS.md | 8 R/bivariate-poisson-distribution.R | 32 +- R/extraDistr-package.R | 1 inst/include/extraDistr_RcppExports.h | 1 man/BivPoiss.Rd | 4 man/extraDistr-package.Rd | 16 - src/RcppExports.cpp | 369 +++++++++++++++++----------------- 9 files changed, 244 insertions(+), 237 deletions(-)
Title: Miscellaneous Functions 'T. Yanagida'
Description: Miscellaneous functions for (1) data handling (e.g., grand-mean and group-mean centering, coding variables and reverse coding items, scale and cluster scores, reading and writing Excel and SPSS files), (2) descriptive statistics (e.g., frequency table, cross tabulation, effect size measures), (3) missing data (e.g., descriptive statistics for missing data, missing data pattern, Little's test of Missing Completely at Random, and auxiliary variable analysis), (4) multilevel data (e.g., multilevel descriptive statistics, within-group and between-group correlation matrix, multilevel confirmatory factor analysis, level-specific fit indices, cross-level measurement equivalence evaluation, multilevel composite reliability, and multilevel R-squared measures), (5) item analysis (e.g., confirmatory factor analysis, coefficient alpha and omega, between-group and longitudinal measurement equivalence evaluation), (6) statistical analysis (e.g., bootstrap confidence intervals, collinearity and resid [...truncated...]
Author: Takuya Yanagida [aut, cre]
Maintainer: Takuya Yanagida <takuya.yanagida@univie.ac.at>
Diff between misty versions 0.7.6 dated 2025-10-27 and 0.8.0 dated 2026-01-18
DESCRIPTION | 8 MD5 | 132 - NAMESPACE | 9 NEWS.md | 50 R/aov.b.R | 6 R/aov.w.R | 6 R/blimp.plot.R | 4 R/blimp.print.R | 2 R/blimp.run.R | 3 R/center.R | 890 ++++-- R/check.collin.R | 38 R/ci.cor.R | 16 R/ci.mean.R | 24 R/ci.prop.R | 8 R/ci.var.R | 24 R/cluster.rwg.R | 10 R/cluster.scores.R | 9 R/coeff.std.R | 2 R/cohens.d.R | 3 R/cor.matrix.R | 10 R/descript.R | 12 R/dominance.manual.R | 3 R/freq.R | 14 R/indirect.R | 15 R/item.alpha.R | 133 - R/item.cfa.R | 8 R/item.invar.R | 6251 +++++++++++++++++++++++++++++++++++------------- R/item.omega.R | 70 R/libraries.R | 4 R/mplus.lca.R | 194 - R/mplus.lca.summa.R | 913 ++++--- R/multilevel.cfa.R | 13 R/multilevel.cor.R | 206 - R/multilevel.descript.R | 7 R/multilevel.fit.R | 24 R/multilevel.icc.R | 140 - R/multilevel.invar.R | 2 R/multilevel.omega.R | 9 R/multilevel.r2.R | 34 R/na.descript.R | 5 R/na.test.R | 2 R/print.misty.object.R | 4102 ++++++++++++++++++------------- R/robust.lmer.R | 2 R/start_message.R | 23 R/summa.R | 14 R/test.levene.R | 6 R/utils.R | 789 +++++- R/write.result.R | 588 +++- man/aov.b.Rd | 4 man/aov.w.Rd | 5 man/blimp.plot.Rd | 4 man/center.Rd | 434 ++- man/ci.cor.Rd | 2 man/dominance.manual.Rd | 3 man/indirect.Rd | 14 man/item.alpha.Rd | 11 man/item.cfa.Rd | 6 man/item.invar.Rd | 462 ++- man/mplus.lca.Rd | 68 man/mplus.lca.summa.Rd | 329 +- man/multilevel.cfa.Rd | 2 man/multilevel.cor.Rd | 41 man/multilevel.icc.Rd | 2 man/multilevel.r2.Rd | 9 man/na.test.Rd | 2 man/robust.lmer.Rd | 2 man/summa.Rd | 3 67 files changed, 11015 insertions(+), 5225 deletions(-)
Title: Flexible Data Simulation Using the Multivariate Normal
Distribution
Description: This R package can be used to generate artificial data conditionally on pre-specified (simulated or user-defined) relationships between the variables and/or observations. Each observation is drawn from a multivariate Normal distribution where the mean vector and covariance matrix reflect the desired relationships. Outputs can be used to evaluate the performances of variable selection, graphical modelling, or clustering approaches by comparing the true and estimated structures (B Bodinier et al (2021) <doi:10.1093/jrsssc/qlad058>).
Author: Barbara Bodinier [aut, cre]
Maintainer: Barbara Bodinier <barbara.bodinier@gmail.com>
Diff between fake versions 1.4.0 dated 2023-04-13 and 1.5.0 dated 2026-01-18
DESCRIPTION | 20 +++++++++------ MD5 | 22 ++++++++--------- NEWS.md | 4 +++ R/simulations.R | 58 +++++++++++++++++---------------------------- build/partial.rdb |binary inst/WORDLIST | 3 ++ man/ExpectedCommunities.Rd | 6 +--- man/HugeAdjacency.Rd | 15 +++-------- man/SimulateAdjacency.Rd | 19 +++++--------- man/SimulateComponents.Rd | 6 +--- man/SimulateCorrelation.Rd | 18 +++++-------- man/SimulateGraphical.Rd | 18 +++++-------- 12 files changed, 81 insertions(+), 108 deletions(-)
Title: Flexible Univariate Count Models Based on Renewal Processes
Description: Flexible univariate count models based on renewal processes. The
models may include covariates and can be specified with familiar formula
syntax as in glm() and package 'flexsurv'. The methodology is described by
Kharrat et all (2019) <doi:10.18637/jss.v090.i13> (included as vignette
'Countr_guide' in the package).
Author: Tarak Kharrat [aut] ,
Georgi N. Boshnakov [aut, cre]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between Countr versions 3.6 dated 2025-12-06 and 3.6.1 dated 2026-01-18
DESCRIPTION | 12 +- MD5 | 48 +++++------ NAMESPACE | 3 NEWS.md | 22 ++++- R/Countr-package.R | 4 R/renewal_cstr.R | 2 R/renewal_methods.R | 1 R/renewal_tools.R | 31 ++++--- build/partial.rdb |binary inst/doc/ComputationalPerformance.pdf |binary inst/doc/Countr_guide.pdf |binary inst/doc/ModelSelectionAndComparison.pdf |binary inst/doc/VarianceCovariance.pdf |binary inst/doc/exampleFertility.pdf |binary inst/doc/exampleFootball.pdf |binary man/frequency_plot.Rd | 17 +++- src/Biv_utils.cpp | 5 - src/built_in_distributions.cpp | 1 src/conv_all.cpp | 55 ++++++------- src/conv_dePril.cpp | 127 +++++++++++++++--------------- src/conv_naive.cpp | 73 ++++++++--------- src/modifiedRenewal.cpp | 129 +++++++++++++++---------------- src/series_hetwei.cpp | 51 ++++++------ src/series_weibull.cpp | 55 ++++++------- src/utils.cpp | 3 25 files changed, 336 insertions(+), 303 deletions(-)
Title: Various Methods for the Two Sample Problem in D>1 Dimensions
Description: The routine twosample_test() in this package runs the
two-sample test using various test statistic for multivariate data.
The user can also run several tests and then find a p value adjusted for simultaneous inference.
The p values are found via permutation or via the parametric bootstrap.
The routine twosample_power() allows the estimation of the power of the tests.
The routine run.studies() allows a user to quickly study the power of a new method and
how it compares to those included in the package.
For details of the methods and references see the included vignettes.
Author: Wolfgang Rolke [aut, cre]
Maintainer: Wolfgang Rolke <wolfgang.rolke@upr.edu>
Diff between MD2sample versions 1.0.0 dated 2025-07-22 and 1.1.0 dated 2026-01-18
DESCRIPTION | 6 +-- MD5 | 32 ++++++++++---------- NEWS.md | 3 + R/case.studies.R | 5 +-- R/chisq2D_test_cont.R | 12 +++++-- R/power_pvals.R | 24 +++++++++++---- R/twosample_power.R | 2 - build/vignette.rds |binary inst/doc/CaseStudies.Rmd | 2 + inst/doc/CaseStudies.html | 73 +++++++++++++++++++++++----------------------- inst/doc/MD2sample.R | 2 - inst/doc/MD2sample.Rmd | 4 +- inst/doc/MD2sample.html | 9 +++-- man/chisq2D_test_cont.Rd | 5 ++- src/gen_sim_data.cpp | 2 - vignettes/CaseStudies.Rmd | 2 + vignettes/MD2sample.Rmd | 4 +- 17 files changed, 109 insertions(+), 78 deletions(-)
Title: FAB Confidence Intervals
Description: Frequentist assisted by Bayes (FAB) confidence interval
construction. See 'Adaptive multigroup confidence intervals with constant
coverage' by Yu and Hoff <DOI:10.1093/biomet/asy009> and
'Exact adaptive confidence intervals for linear regression coefficients'
by Hoff and Yu <DOI:10.1214/18-EJS1517>.
Author: Peter Hoff [aut, cre],
Chaoyu Yu [ctb]
Maintainer: Peter Hoff <peter.hoff@duke.edu>
Diff between fabCI versions 0.2 dated 2021-01-07 and 0.3 dated 2026-01-18
DESCRIPTION | 20 +++++++++++++------- MD5 | 36 ++++++++++++++++++------------------ NEWS.md | 12 ++++++++++-- R/data.R | 2 +- man/ebayes_est.Rd | 9 ++++++--- man/fabregCI.Rd | 10 +++++++--- man/fabtCI.Rd | 1 - man/fabtwzCI.Rd | 3 +-- man/fabtzCI.Rd | 4 +--- man/fabzCI.Rd | 1 - man/hhetmodel.Rd | 1 - man/hhommodel.Rd | 1 - man/multifabCI.Rd | 1 - man/multifabCIhom.Rd | 1 - man/pppaccept.Rd | 1 - man/radon.Rd | 7 ++++--- man/sfabz.Rd | 1 - man/umauregCI.Rd | 1 - man/wfabt.Rd | 1 - 19 files changed, 61 insertions(+), 52 deletions(-)
Title: Semiparametric Factor and Regression Models for Symmetric
Relational Data
Description: Estimation of the parameters in a model for
symmetric relational data (e.g., the above-diagonal part of a
square matrix), using a model-based eigenvalue decomposition
and regression. Missing data is accommodated, and a posterior
mean for missing data is calculated under the assumption that
the data are missing at random. The marginal distribution of
the relational data can be arbitrary, and is fit with an
ordered probit specification. See Hoff (2007) <doi:10.48550/arXiv.0711.1146>.
for details on the model.
Author: Peter Hoff [aut, cre]
Maintainer: Peter Hoff <peter.hoff@duke.edu>
Diff between eigenmodel versions 1.11 dated 2019-05-28 and 1.12 dated 2026-01-18
DESCRIPTION | 18 +++++++++++------- MD5 | 4 ++-- NEWS.md | 12 ++++++++++-- 3 files changed, 23 insertions(+), 11 deletions(-)
Title: Miscellaneous R Functions and Aliases
Description: Provides utility functions for, and drawing on, the 'data.table' package. The package also collates useful miscellaneous functions extending base R not available elsewhere. The name is a portmanteau of 'utils' and the author.
Author: Hugh Parsonage [aut, cre],
Michael Frasco [ctb],
Ben Hamner [ctb]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between hutils versions 1.8.1 dated 2022-04-13 and 2.0.0 dated 2026-01-18
hutils-1.8.1/hutils/tests/testthat/test_1-0-0_if_else.R |only hutils-2.0.0/hutils/DESCRIPTION | 10 hutils-2.0.0/hutils/MD5 | 35 hutils-2.0.0/hutils/NAMESPACE | 2 hutils-2.0.0/hutils/NEWS.md | 362 +- hutils-2.0.0/hutils/R/find_pattern.R | 1 hutils-2.0.0/hutils/R/hutils-package.R | 62 hutils-2.0.0/hutils/R/if_else.R | 5 hutils-2.0.0/hutils/R/replace_pattern_in.R | 22 hutils-2.0.0/hutils/README.md | 3 hutils-2.0.0/hutils/build/vignette.rds |binary hutils-2.0.0/hutils/inst/doc/hutils.R | 464 +-- hutils-2.0.0/hutils/inst/doc/hutils.html | 1392 ++++------ hutils-2.0.0/hutils/man/if_else.Rd | 5 hutils-2.0.0/hutils/tests/testthat/test-backwards-compatibility.R | 16 hutils-2.0.0/hutils/tests/testthat/test_2-0-0_if_else.R |only hutils-2.0.0/hutils/tests/testthat/version-sha1s/v1-0-0.tsv | 1 hutils-2.0.0/hutils/tests/testthat/version-sha1s/v1-2-0.tsv | 2 hutils-2.0.0/hutils/tests/testthat/version-sha1s/v1-3-0.tsv | 2 hutils-2.0.0/hutils/tests/testthat/version-sha1s/v2-0-0.tsv |only 20 files changed, 1163 insertions(+), 1221 deletions(-)
Title: Convert 'sjPlot' HTML-Tables to R 'data.frame'
Description: A small set of helper functions to convert 'sjPlot'
HTML-tables to R data.frame objects / knitr::kable-tables.
Author: Lorenz A. Kapsner [cre, aut, cph]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between sjtable2df versions 0.0.4 dated 2025-04-04 and 0.0.5 dated 2026-01-18
DESCRIPTION | 16 - MD5 | 34 +- NAMESPACE | 1 R/get_html_table.R | 44 +-- R/get_xtab_summary.R | 11 R/mtab2df.R | 140 +++++----- R/xtab2df.R | 62 ++-- R/xtab_utils.R | 10 R/zzz.R | 1 build/vignette.rds |binary inst/doc/sjtable2df_overview.R | 20 - inst/doc/sjtable2df_overview.html | 307 +++++++++++++++-------- inst/doc/sjtable2df_overview.qmd | 26 + man/mtab2df.Rd | 70 ++--- man/xtab2df.Rd | 42 +-- tests/testthat/test-mtab2df.R | 432 ++++++++++++++++----------------- tests/testthat/test-xtab2df.R | 496 ++++++++++++++++++-------------------- vignettes/sjtable2df_overview.qmd | 26 + 18 files changed, 927 insertions(+), 811 deletions(-)
Title: Generalized Factor Model
Description: Generalized factor model is implemented for ultra-high dimensional data with mixed-type variables.
Two algorithms, variational EM and alternate maximization, are designed to implement the generalized factor model,
respectively. The factor matrix and loading matrix together with the number of factors can be well estimated.
This model can be employed in social and behavioral sciences, economy and finance, and genomics,
to extract interpretable nonlinear factors. More details can be referred to
Wei Liu, Huazhen Lin, Shurong Zheng and Jin Liu. (2023) <doi:10.1080/01621459.2021.1999818>.
Author: Wei Liu [aut, cre],
Huazhen Lin [aut],
Shurong Zheng [aut],
Jin Liu [aut],
Jinyu Nie [aut]
Maintainer: Wei Liu <LiuWeideng@gmail.com>
Diff between GFM versions 1.2.1 dated 2023-08-11 and 1.2.2 dated 2026-01-18
DESCRIPTION | 12 - MD5 | 29 +- R/gfm.R | 89 ++++++++ R/vb_gfm.R | 63 +++++- README.md | 22 +- build/vignette.rds |binary inst/doc/GFM.Brain.R | 2 inst/doc/GFM.Brain.html | 232 ++++++++++++---------- inst/doc/GFM.Simu.R | 2 inst/doc/GFM.Simu.html | 453 +++++++++++++++++++++++--------------------- inst/doc/OverGFM_exam.R |only inst/doc/OverGFM_exam.Rmd |only inst/doc/OverGFM_exam.pdf |only inst/doc/RGFM.R | 2 inst/doc/RGFM.html | 167 +++++++++------- src/bgfm.cpp | 1 vignettes/OverGFM_exam.Rmd |only vignettes/OverGFM_exam.html |only 18 files changed, 670 insertions(+), 404 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-10 0.2.0
2017-10-16 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-08 1.2.1
2017-04-03 1.2
2015-06-04 1.1
2014-06-12 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-08 0.9-3
2014-03-11 0.9-2
2013-09-21 0.9-1
2011-02-17 0.9-0
2011-01-27 0.3-8
2009-11-03 0.3-6
2009-02-11 0.3-5
2008-06-26 0.3-4
2006-10-03 0.2-4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-12-18 1.0.1
2017-07-08 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-28 2.0
2015-02-03 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-09-18 1.3
2014-05-19 1.2
2013-07-26 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-25 0.3.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-27 1.0.2
2009-02-25 1.0.1
2005-05-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-27 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-12 0.3-1
2012-12-04 0.2-4
2011-04-06 0.2-3
2008-11-26 0.2-2
2006-12-06 0.2-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-09-08 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-01 2.3.3
2013-08-08 1.1.8-8
2011-11-28 1.0.11-24
2011-11-20 1.0.11-19
Title: Translate Words or Sentences via Online Translators
Description: Useful functions to translate text for multiple languages using online translators.
For example, by translating error messages and descriptive analysis results into a language familiar
to the user, it enables a better understanding of the information, thereby reducing the barriers caused by language.
It offers several helper functions to query gene information to help interpretation of interested genes (e.g., marker genes, differential expression genes),
and provides utilities to translate 'ggplot' graphics. This package is not affiliated with any of the online translators.
The developers do not take responsibility for the invoice it incurs when using this package, especially for exceeding the free quota.
Author: Guangchuang Yu [aut, cre, cph] ,
Guannan Chen [ctb],
Difei Wang [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between fanyi versions 0.0.9 dated 2025-12-17 and 0.1.0 dated 2026-01-18
DESCRIPTION | 6 +++--- MD5 | 14 ++++++++------ NAMESPACE | 1 + NEWS.md | 6 ++++++ R/chat.R |only R/chatglm.r | 50 ++++++++++++++++++++++++++++++++++++++++---------- R/deepseek.r | 21 ++++++++++++++------- R/qwen.r | 48 +++++++++++++++++++++++++----------------------- man/chat_request.Rd |only 9 files changed, 97 insertions(+), 49 deletions(-)
Title: 'C++' Implementations of Functional Enrichment Analysis
Description: Fast implementations of functional enrichment analysis methods using 'C++' via 'Rcpp'.
Currently provides Over-Representation Analysis (ORA) and Gene Set Enrichment Analysis (GSEA).
The multilevel GSEA algorithm is derived from the 'fgsea' package.
Methods are described in Subramanian et al. (2005) <doi:10.1073/pnas.0506580102> and Korotkevich et al. (2021) <doi:10.1101/060012>.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between enrichit versions 0.0.9 dated 2026-01-10 and 0.1.0 dated 2026-01-18
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 9 +++++++++ R/gsea.R | 40 ++++++++++++++++++++++++++++++++++++---- R/ora_gson.R | 42 +++++++++++++++++++++++++++++++++++------- R/utilities.R | 8 ++++---- inst/doc/enrichit.html | 10 +++++----- 7 files changed, 99 insertions(+), 30 deletions(-)
Title: Bayesian Analysis of List Experiments with Prior Information
Description: Estimates Bayesian models of list experiments with informative priors. It includes functionalities to estimate different types of list experiment models with varying prior information. See Lu and Traunmüller (2026) <doi:10.1017/psrm.2025.10084> for examples and details of estimation.
Author: Xiao Lu [aut, cre],
Richard Traunmueller [aut]
Maintainer: Xiao Lu <xiao.lu.research@gmail.com>
Diff between bayeslist versions 0.0.1.5 dated 2025-03-19 and 0.0.1.6 dated 2026-01-18
DESCRIPTION | 8 +-- MD5 | 61 ++++++++++++------------- NEWS.md |only R/bayeslist-package.R | 8 +-- R/bayeslist.R | 21 +++++--- R/plotfun.R | 1 R/printfun.R | 1 README.md | 3 + data/london.rda |binary data/srilanka.RData |binary inst/stan/model_misreport_aux.stan | 2 inst/stan/model_misreport_cmp.stan | 2 inst/stan/model_misreport_doublelist.stan | 2 inst/stan/model_misreport_infonorm.stan | 2 inst/stan/model_misreport_noaux.stan | 10 +--- inst/stan/model_outcome_aux.stan | 2 inst/stan/model_outcome_cmp.stan | 2 inst/stan/model_outcome_doublelist.stan | 2 inst/stan/model_outcome_infonorm.stan | 2 inst/stan/model_outcome_noaux.stan | 12 +--- inst/stan/model_predict_aux.stan | 2 inst/stan/model_predict_aux_linear.stan | 2 inst/stan/model_predict_cmp.stan | 2 inst/stan/model_predict_cmp_linear.stan | 2 inst/stan/model_predict_doublelist.stan | 2 inst/stan/model_predict_doublelist_linear.stan | 2 inst/stan/model_predict_infonorm.stan | 2 inst/stan/model_predict_infonorm_linear.stan | 2 inst/stan/model_predict_noaux.stan | 17 ++---- inst/stan/model_predict_noaux_linear.stan | 13 ++--- man/bayeslist.Rd | 13 +++-- man/srilanka.Rd | 8 +-- 32 files changed, 101 insertions(+), 107 deletions(-)
Title: Nonparametric Estimation and Inference on Dose-Response Curves
Description: A novel integral estimator for estimating the causal effects with continuous treatments (or dose-response curves) and a localized derivative estimator for estimating the derivative effects. The inference on the dose-response curve and its derivative is conducted via nonparametric bootstrap.
The reference paper is Zhang, Chen, and Giessing (2024) <doi:10.48550/arXiv.2405.09003>.
Author: Yikun Zhang [aut, cre] ,
Yen-Chi Chen [aut]
Maintainer: Yikun Zhang <yikunzhang@foxmail.com>
Diff between npDoseResponse versions 0.1 dated 2024-05-28 and 0.2 dated 2026-01-18
npDoseResponse |only 1 file changed
More information about npDoseResponse at CRAN
Permanent link
Title: K's "Don't Repeat Yourself"-Collection
Description: A collection of personal helper functions to avoid redundancy
in the spirit of the "Don't repeat yourself" principle of software
development (<https://en.wikipedia.org/wiki/Don%27t_repeat_yourself>).
Author: Lorenz A. Kapsner [cre, aut, cph]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between kdry versions 0.0.2 dated 2024-03-08 and 0.0.3 dated 2026-01-18
DESCRIPTION | 12 MD5 | 104 +++--- NAMESPACE | 52 +-- R/base_icolnames.R | 44 +- R/base_list_append.R | 64 ++-- R/base_list_update.R | 74 ++-- R/dtr_matrix2df.R | 84 ++--- R/misc_argument_catcher.R | 84 ++--- R/misc_duplicated_by_names.R | 50 +-- R/misc_recursive_copy.R | 136 ++++---- R/misc_subset_options.R | 58 +-- R/mlh_outsample_row_indices.R | 190 ++++++------ R/mlh_reshape.R | 74 ++-- R/mlh_subset.R | 156 +++++----- R/pch_check_available_cores.R | 82 ++--- R/pch_clean_up.R | 54 +-- R/pch_register_parallel.R | 52 +-- R/plt_parallel_coordinates.R | 600 ++++++++++++++++++++------------------- R/rep_distribution_utils.R | 62 ++-- R/rep_frac_pct.R | 114 +++---- R/rep_mean_sd.R | 158 +++++----- R/rep_median_ci.R | 222 +++++++------- R/rep_pval.R | 104 +++--- R/rep_sum_pct.R | 110 +++---- R/sts_normalize.R | 54 +-- R/zzz.R | 6 man/dtr_matrix2df.Rd | 60 +-- man/list.append.Rd | 68 ++-- man/list.update.Rd | 70 ++-- man/misc_argument_catcher.Rd | 60 +-- man/misc_duplicated_by_names.Rd | 54 +-- man/misc_recursive_copy.Rd | 70 ++-- man/misc_subset_options.Rd | 52 +-- man/mlh_outsample_row_indices.Rd | 84 ++--- man/mlh_subset.Rd | 54 +-- man/pch_check_available_cores.Rd | 50 +-- man/pch_clean_up.Rd | 56 +-- man/pch_register_parallel.Rd | 58 +-- man/plt_parallel_coordinates.Rd | 126 ++++---- man/rep_frac_pct.Rd | 94 +++--- man/rep_mean_sd.Rd | 116 +++---- man/rep_median_ci.Rd | 128 ++++---- man/sts_normalize.Rd | 50 +-- tests/testthat/_snaps/rep.md | 16 - tests/testthat/test-base_lists.R | 128 ++++---- tests/testthat/test-dtr.R | 40 +- tests/testthat/test-lints.R | 26 - tests/testthat/test-misc.R | 158 +++++----- tests/testthat/test-mlh.R | 158 ++++------ tests/testthat/test-pch.R | 40 +- tests/testthat/test-plt.R | 16 - tests/testthat/test-rep.R | 174 +++++------ tests/testthat/test-sts.R | 42 +- 53 files changed, 2431 insertions(+), 2417 deletions(-)
Title: Retrieve and Analyze Clinical Trials Data from Public Registers
Description: A system for querying, retrieving and analyzing
protocol- and results-related information on clinical trials from
four public registers, the 'European Union Clinical Trials Register'
('EUCTR', <https://www.clinicaltrialsregister.eu/>),
'ClinicalTrials.gov' (<https://clinicaltrials.gov/> and also
translating queries the retired classic interface), the
'ISRCTN' (<http://www.isrctn.com/>) and the
'European Union Clinical Trials Information System'
('CTIS', <https://euclinicaltrials.eu/>).
Trial information is downloaded, converted and stored in a database
('PostgreSQL', 'SQLite', 'DuckDB' or 'MongoDB'; via package 'nodbi').
Protocols, statistical analysis plans, informed consent sheets and other
documents in registers associated with trials can also be downloaded.
Other functions implement trial concepts canonically across registers,
identify deduplicated records, easily find and extract variables
(fields) of interest even from complex nested data as used by the
re [...truncated...]
Author: Ralf Herold [aut, cre] ,
Marek Kubica [cph] ,
Ivan Bozhanov [cph]
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between ctrdata versions 1.25.1 dated 2025-12-07 and 1.26.0 dated 2026-01-18
DESCRIPTION | 15 LICENSE | 2 MD5 | 80 +-- NAMESPACE | 8 NEWS.md | 14 R/ctrFindActiveSubstanceSynonyms.R | 4 R/ctrLoadQueryIntoDb.R | 23 - R/ctrLoadQueryIntoDbCtgov2.R | 34 + R/ctrLoadQueryIntoDbCtis.R | 22 - R/ctrLoadQueryIntoDbEuctr.R | 50 +- R/ctrLoadQueryIntoDbIsrctn.R | 15 R/ctrRerunQuery.R | 143 +----- R/ctrShowOneTrial.R | 2 R/ctrdata-registers.R | 21 - R/ctrdata-trial-concepts.R | 5 R/dbFindIdsUniqueTrials.R | 27 + R/dbQueryHistory.R | 3 R/f_sampleSize.R | 5 R/f_sponsorType.R | 6 R/util_functions.R | 369 ++++++++---------- README.md | 362 ++++++++--------- build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 6 inst/doc/ctrdata_install.html | 4 inst/doc/ctrdata_summarise.Rmd | 4 inst/doc/ctrdata_summarise.html | 9 inst/tinytest/ctrdata_ctgov.R | 25 + inst/tinytest/ctrdata_ctgov2.R | 8 inst/tinytest/ctrdata_ctis.R | 69 +++ inst/tinytest/ctrdata_euctr.R | 73 +-- inst/tinytest/test_ctrdata_function_activesubstance.R | 2 man/ctrLoadQueryIntoDb.Rd | 23 - man/ctrdata-registers.Rd | 21 - man/ctrdata-trial-concepts.Rd | 5 man/dbFindIdsUniqueTrials.Rd | 3 man/dbQueryHistory.Rd | 3 man/f.sampleSize.Rd | 5 man/figures/README-ctrdata_across_registers.png |binary man/figures/README-ctrdata_results_neuroblastoma.png |binary vignettes/ctrdata_summarise.Rmd | 4 41 files changed, 747 insertions(+), 727 deletions(-)
Title: Easy and Efficient Batch Processing of Regression Models
Description: Easily processes batches of univariate or multivariate
regression models. Returns results in a tidy format and generates
visualization plots for straightforward interpretation (Wang,
Shixiang, et al. (2025) <DOI:10.1002/mdr2.70028>).
Author: Shixiang Wang [aut, cre] ,
Yun Peng [aut] ,
Chenyang Shu [aut]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between bregr versions 1.3.1 dated 2025-12-17 and 1.4.0 dated 2026-01-18
DESCRIPTION | 10 - MD5 | 50 ++++--- NAMESPACE | 3 NEWS.md | 8 + R/02-pipeline.R | 45 ++++-- R/03-accessors.R | 11 - R/04-show.R | 72 +++++----- R/05-polar.R | 10 + R/08-compare.R |only README.md | 57 +++++--- inst/doc/bregr-group-by.html | 6 inst/doc/model-config.html | 30 ++-- inst/doc/quick-analyze-cancer-data.html | 4 inst/doc/save-model-file.html | 12 - inst/doc/supported-models.html | 118 ++++++++--------- man/br_compare_models.Rd |only man/br_show_forest_circle.Rd | 2 man/br_show_forest_comparison.Rd |only man/br_show_risk_network.Rd | 8 - man/bregr-package.Rd | 2 man/figures/README-unnamed-chunk-11-1.png |binary man/figures/README-unnamed-chunk-13-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-8-1.png |binary man/print.breg_comparison.Rd |only tests/testthat/test-compare.R |only tests/testthat/test-roxytest-testexamples-04-show.R | 20 +- tests/testthat/test-roxytest-testexamples-05-polar.R | 14 +- tests/testthat/test-roxytest-testexamples-08-compare.R |only 29 files changed, 278 insertions(+), 204 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-19 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-05-20 2024.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-06-06 1.0.0
2025-05-05 0.1.1
2024-11-06 0.1.0.0
Title: Supporting Functions for Packages Maintained by 'Yihui Xie'
Description: Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
Author: Yihui Xie [aut, cre, cph] ,
Wush Wu [ctb],
Daijiang Li [ctb],
Xianying Tan [ctb],
Salim Brueggemann [ctb] ,
Christophe Dervieux [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xfun versions 0.55 dated 2025-12-16 and 0.56 dated 2026-01-18
DESCRIPTION | 8 +-- LICENSE | 2 MD5 | 40 ++++++++--------- NAMESPACE | 1 R/browser.R | 17 ++++--- R/cache.R | 5 -- R/cran.R | 8 +++ R/github.R | 9 ++- R/io.R | 4 - R/revcheck.R | 111 ++++++++++++++++++++++++------------------------- R/utils.R | 8 --- build/vignette.rds |binary inst/doc/xfun.R | 11 ---- inst/doc/xfun.Rmd | 13 +++-- inst/doc/xfun.html | 32 +++++++------- man/attr2.Rd | 6 -- man/browser_print.Rd | 10 ++-- man/github_releases.Rd | 4 - man/lazy_save.Rd | 4 - man/rev_check.Rd | 92 ++++++++++++++++++++-------------------- vignettes/xfun.Rmd | 13 +++-- 21 files changed, 193 insertions(+), 205 deletions(-)
Title: Alt String Implementation
Description: Provides an extendable, performant and multithreaded 'alt-string' implementation backed by 'C++' vectors and strings.
Author: Travers Ching [aut, cre, cph],
Phillip Hazel [ctb] ,
Zoltan Herczeg [ctb, cph] ,
University of Cambridge [cph] ,
Tilera Corporation [cph] ,
Yann Collet [ctb, cph]
Maintainer: Travers Ching <traversc@gmail.com>
Diff between stringfish versions 0.17.0 dated 2025-07-13 and 0.18.0 dated 2026-01-18
ChangeLog | 4 DESCRIPTION | 12 - MD5 | 24 +- README.md | 81 ++++----- build/vignette.rds |binary configure | 253 +++++++++++++--------------- inst/doc/vignette.R | 18 +- inst/doc/vignette.html | 340 ++++++++++++++++++++------------------ inst/doc/vignette.rmd | 2 inst/extra_tests/benchmark_test.R | 44 ++-- inst/include/sf_internal.h | 19 ++ tests/tests.R | 53 +++-- vignettes/vignette.rmd | 2 13 files changed, 450 insertions(+), 402 deletions(-)
Title: A Model Library for 'nlmixr2'
Description: A model library for 'nlmixr2'. The models include
(and plan to include) pharmacokinetic, pharmacodynamic, and
disease models used in pharmacometrics. Where applicable,
references for each model are included in the meta-data for
each individual model. The package also includes model
composition and modification functions to make model updates
easier.
Author: Richard Hooijmaijers [aut],
Matthew Fidler [aut] ,
Bill Denney [aut, cre] ,
Kiranmayi Vedantham [aut]
Maintainer: Bill Denney <wdenney@humanpredictions.com>
Diff between nlmixr2lib versions 0.3.1 dated 2025-10-22 and 0.3.2 dated 2026-01-18
nlmixr2lib-0.3.1/nlmixr2lib/inst/modeldb.qs |only nlmixr2lib-0.3.1/nlmixr2lib/tests/testthat/test-removeTransit.R |only nlmixr2lib-0.3.2/nlmixr2lib/DESCRIPTION | 16 nlmixr2lib-0.3.2/nlmixr2lib/MD5 | 58 +- nlmixr2lib-0.3.2/nlmixr2lib/NEWS.md | 9 nlmixr2lib-0.3.2/nlmixr2lib/R/addResErr.R | 5 nlmixr2lib-0.3.2/nlmixr2lib/R/modeldb.R | 2 nlmixr2lib-0.3.2/nlmixr2lib/R/modellib.R | 2 nlmixr2lib-0.3.2/nlmixr2lib/R/readModelDb.R | 2 nlmixr2lib-0.3.2/nlmixr2lib/R/updateOncologyXenograftSimeoni2004.R | 2 nlmixr2lib-0.3.2/nlmixr2lib/README.md | 4 nlmixr2lib-0.3.2/nlmixr2lib/build/vignette.rds |binary nlmixr2lib-0.3.2/nlmixr2lib/data/modeldb.rda |binary nlmixr2lib-0.3.2/nlmixr2lib/inst/WORDLIST | 7 nlmixr2lib-0.3.2/nlmixr2lib/inst/doc/Grimm_2023.html | 13 nlmixr2lib-0.3.2/nlmixr2lib/inst/doc/Kyhl_2016_nalmefene.html | 4 nlmixr2lib-0.3.2/nlmixr2lib/inst/doc/Xie_2019_agomelatine.R |only nlmixr2lib-0.3.2/nlmixr2lib/inst/doc/Xie_2019_agomelatine.Rmd |only nlmixr2lib-0.3.2/nlmixr2lib/inst/doc/Xie_2019_agomelatine.html |only nlmixr2lib-0.3.2/nlmixr2lib/inst/doc/list-of-models.html | 96 ++-- nlmixr2lib-0.3.2/nlmixr2lib/inst/modeldb.qs2 |only nlmixr2lib-0.3.2/nlmixr2lib/inst/modeldb/endogenous/igg_kim_2006.R |only nlmixr2lib-0.3.2/nlmixr2lib/inst/modeldb/specificDrugs/Xie_2019_agomelatine.R |only nlmixr2lib-0.3.2/nlmixr2lib/inst/modeldb/therapeuticArea/oncology/tgi_no_sat_expo.R | 15 nlmixr2lib-0.3.2/nlmixr2lib/inst/modeldb/therapeuticArea/oncology/tgi_sat_Gompertz.R |only nlmixr2lib-0.3.2/nlmixr2lib/inst/modeldb/therapeuticArea/oncology/tgi_sat_genLogistic.R |only nlmixr2lib-0.3.2/nlmixr2lib/man/modeldb.Rd | 2 nlmixr2lib-0.3.2/nlmixr2lib/man/updateOncologyXenograftSimeoni2004.Rd | 2 nlmixr2lib-0.3.2/nlmixr2lib/tests/testthat.R | 4 nlmixr2lib-0.3.2/nlmixr2lib/tests/testthat/test-addBaseline.R | 2 nlmixr2lib-0.3.2/nlmixr2lib/tests/testthat/test-addDepot.R | 17 nlmixr2lib-0.3.2/nlmixr2lib/tests/testthat/test-addResErr.R | 67 +++ nlmixr2lib-0.3.2/nlmixr2lib/tests/testthat/test-addTransit.R | 212 +++++++++- nlmixr2lib-0.3.2/nlmixr2lib/tests/testthat/test-addWeibullAbs.R | 2 nlmixr2lib-0.3.2/nlmixr2lib/tests/testthat/test-modellib.R |only nlmixr2lib-0.3.2/nlmixr2lib/vignettes/Xie_2019_agomelatine.Rmd |only 36 files changed, 439 insertions(+), 104 deletions(-)
Title: Multicollinearity Diagnostic Measures
Description: Package computes popular and widely used multicollinearity diagnostic measures \doi{10.17576/jsm-2019-4809-26} and \doi{10.32614/RJ-2016-062}. Package also indicates which regressors may be the reason of collinearity among regressors.
Author: Imdad Ullah Muhammad [aut, cre] ,
Aslam Muhammad [aut, ctb]
Maintainer: Imdad Ullah Muhammad <mimdadasad@gmail.com>
Diff between mctest versions 1.3.1 dated 2020-06-29 and 1.3.2 dated 2026-01-18
DESCRIPTION | 16 ++++++------- MD5 | 17 +++++++------- build |only inst/CITATION | 68 +++++++++++++++++---------------------------------------- inst/NEWS.Rd | 9 +++++++ man/eigp.Rd | 4 +-- man/imcdiag.Rd | 6 ++--- man/mc.plot.Rd | 4 +-- man/mctest.Rd | 4 +-- man/omcdiag.Rd | 6 ++--- 10 files changed, 59 insertions(+), 75 deletions(-)
Title: Furniture for Quantitative Scientists
Description: Contains four main functions (i.e., four pieces of furniture):
table1() which produces a well-formatted table of descriptive statistics common as Table 1
in research articles, tableC() which produces a well-formatted table of correlations,
tableF() which provides frequency counts, and washer() which
is helpful in cleaning up the data. These furniture-themed functions are designed
to simplify common tasks in quantitative analysis. Other data summary and cleaning tools
are also available.
Author: Tyson S. Barrett [aut, cre] ,
Emily Brignone [aut],
Daniel J. Laxman [aut]
Maintainer: Tyson S. Barrett <t.barrett88@gmail.com>
Diff between furniture versions 1.9.14 dated 2023-09-05 and 1.11.0 dated 2026-01-18
DESCRIPTION | 25 +-- MD5 | 52 +++--- NAMESPACE | 10 + NEWS.md | 16 ++ R/Table1.R | 215 ++++++++++++++-------------- R/furniture.R | 73 +++++---- R/long_wide.R | 97 +++++++----- R/table1_flextable.R |only R/table1_gt.R |only R/table1_utils.R | 86 ++++++----- R/tableF.R | 2 R/to_latex2.R | 6 R/utils.R | 111 +++++++++++++- R/washer.R | 2 R/zzz.R | 7 build/vignette.rds |binary inst/CITATION | 2 inst/doc/Furniture.R | 12 - inst/doc/Furniture.html | 307 ++++++++++++++++++++--------------------- inst/doc/Table1.R | 4 inst/doc/Table1.html | 7 man/furniture.Rd | 71 ++++++--- man/long.Rd | 23 +-- man/table1.Rd | 39 ++++- man/table1_flextable.Rd |only man/table1_gt.Rd |only man/wide.Rd | 7 tests/testthat/test_table1.R | 131 +++++++++++++++++ tests/testthat/test_widelong.R | 8 - 29 files changed, 830 insertions(+), 483 deletions(-)
Title: Enrich and Analyze Sovereign-Level Economic Data
Description: Provides a consistent set of functions for enriching and analyzing
sovereign-level economic data. Economists, data scientists, and financial
professionals can use the package to add standardized identifiers,
demographic and macroeconomic indicators, and derived metrics such as
gross domestic product per capita or government expenditure shares.
Author: Christoph Scheuch [aut, cre, cph]
Maintainer: Christoph Scheuch <christoph@tidy-intelligence.com>
Diff between econtools versions 0.1.0 dated 2025-09-05 and 0.1.1 dated 2026-01-18
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- NEWS.md | 4 ++++ R/get.R | 18 +++++++++++++++--- README.md | 13 +++++++++---- man/add_gdp_column.Rd | 2 +- man/add_gov_exp_column.Rd | 2 +- man/add_gov_exp_share_column.Rd | 2 +- man/add_income_level_column.Rd | 2 +- man/add_population_column.Rd | 2 +- man/add_population_density_column.Rd | 2 +- man/add_population_share_column.Rd | 2 +- man/add_poverty_ratio_column.Rd | 2 +- man/econtools-package.Rd | 4 ++-- 14 files changed, 55 insertions(+), 34 deletions(-)
Title: Activity Fragmentation Metrics Extracted from Minute Level
Activity Data
Description: Recent studies haven shown that, on top of total daily active/sedentary volumes, the time
accumulation strategies provide more sensitive information. This package provides functions to extract
commonly used fragmentation metrics to quantify such time accumulation strategies based on minute level
actigraphy-measured activity counts data.
Author: Junrui Di [aut, cre],
John Muschelli [aut],
Vadim zipunnikov [aut]
Maintainer: Junrui Di <dijunrui@gmail.com>
Diff between ActFrag versions 0.1.1 dated 2020-02-11 and 0.1.2 dated 2026-01-18
DESCRIPTION | 14 - MD5 | 31 +- NAMESPACE | 34 +- NEWS.md | 9 R/fragmentation.R | 395 +++++++++++++++---------------- R/fragmentation_long.R | 20 + R/wear_flag.R | 97 +++---- README.md | 42 +-- build/vignette.rds |binary inst/doc/ActFrag.R | 32 +- inst/doc/ActFrag.html | 276 ++++++++++++++------- man/example_activity_data.Rd | 6 man/fragmentation.Rd | 138 +++++----- man/fragmentation_long.Rd | 161 ++++++------ man/wear_flag.Rd | 77 +++--- tests/testthat.R |only tests/testthat/test-long_long_examples.R |only tests/testthat/test-metric.R |only 18 files changed, 740 insertions(+), 592 deletions(-)