Title: Toolbox for Model Building and Forecasting
Description: Implements functions and instruments for regression model building and its
application to forecasting. The main scope of the package is in variables selection
and models specification for cases of time series data. This includes promotional
modelling, selection between different dynamic regressions with non-standard
distributions of errors, selection based on cross validation, solutions to the fat
regression model problem and more. Models developed in the package are tailored
specifically for forecasting purposes. So as a results there are several methods
that allow producing forecasts from these models and visualising them.
Author: Ivan Svetunkov [aut, cre] ,
Yves R. Sagaert [ctb]
Maintainer: Ivan Svetunkov <ivan@svetunkov.com>
Diff between greybox versions 2.0.6 dated 2025-09-03 and 2.0.7 dated 2026-01-19
DESCRIPTION | 10 +- MD5 | 24 +++--- NAMESPACE | 3 NEWS | 11 ++ R/coefbootstrap.R | 31 +++++++ R/error-measures.R | 50 +++++++++--- R/methods.R | 56 +++++++++++++- inst/doc/alm.html | 70 ++++++++--------- inst/doc/greybox.html | 171 +++++++++++++++++++++---------------------- inst/doc/maUsingGreybox.html | 14 +-- inst/doc/ro.html | 16 ++-- man/error-measures.Rd | 8 +- man/measures.Rd | 1 13 files changed, 294 insertions(+), 171 deletions(-)
Title: Make 'ggplot2' Graphics Interactive
Description: Create interactive 'ggplot2' graphics using 'htmlwidgets'.
Author: David Gohel [aut, cre],
Panagiotis Skintzos [aut],
Mike Bostock [cph] ,
Speros Kokenes [cph] ,
Eric Shull [cph] ,
Lee Thomason [cph] ,
Vladimir Agafonkin [cph] ,
Eric Book [ctb]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between ggiraph versions 0.9.2 dated 2025-10-07 and 0.9.3 dated 2026-01-19
DESCRIPTION | 6 MD5 | 53 ++++--- NEWS.md | 29 ++++ R/facet_interactive.R | 6 R/fonts.R | 10 + R/geom_quasirandom_interactive.R | 1 R/geom_ribbon_interactive.R | 12 + R/girafe.R | 26 +++ R/girafe_options.R | 141 ++++++++++++++------- R/ipar.R | 23 ++- R/tracers.R | 4 R/utils_data.r | 6 README.md | 99 +++++++++----- build/vignette.rds |binary inst/examples/rmd/flexdashboard/flexdashboard.html |only inst/htmlwidgets/girafe.js | 2 inst/tinytest/test-girafe.R | 2 inst/tinytest/test-girafe_options.R | 6 inst/tinytest/test-tracers.R | 2 inst/tinytest/test-trailing-comma.R | 2 man/geom_quasirandom_interactive.Rd | 5 man/geom_text_interactive.Rd | 9 - man/girafe.Rd | 21 ++- man/guide_bins_interactive.Rd | 1 man/opts_selection.Rd | 7 - src/Makevars | 1 src/Makevars.ucrt | 3 src/Makevars.win | 3 28 files changed, 322 insertions(+), 158 deletions(-)
Title: Philippine Tropical Cyclones Data
Description: The Philippines frequently experiences tropical cyclones (called
'bagyo' in the Filipino language) because of its geographical position.
These cyclones typically bring heavy rainfall, leading to widespread
flooding, as well as strong winds that cause significant damage to human
life, crops, and property. Data on cyclones are collected and curated by the
Philippine Atmospheric, Geophysical, and Astronomical Services
Administration or 'PAGASA' and made available through its website
<https://bagong.pagasa.dost.gov.ph/tropical-cyclone/publications/annual-report>.
This package contains Philippine tropical cyclones data in a
machine-readable format. It is hoped that this data package provides an
interesting and unique dataset for data exploration and visualisation.
Author: Ernest Guevarra [aut, cre, cph]
Maintainer: Ernest Guevarra <ernest@guevarra.io>
Diff between bagyo versions 0.1.1 dated 2024-04-18 and 0.2.0 dated 2026-01-19
DESCRIPTION | 14 +-- MD5 | 37 +++++---- NEWS.md | 11 ++ R/bagyo.R | 2 R/utils.R |only README.md | 84 +++++++++++++++------- build/vignette.rds |binary data/bagyo.rda |binary inst/CITATION | 4 - inst/WORDLIST | 5 + inst/doc/bagyo.Rmd | 4 - inst/doc/bagyo.html | 6 - inst/doc/visualisation.R | 33 +++++--- inst/doc/visualisation.Rmd | 33 +++++--- inst/doc/visualisation.html | 133 +++++++++++++++++------------------ man/bagyo.Rd | 2 man/figures/README-barplot-1.png |binary man/figures/README-scatterplot-1.png |binary vignettes/bagyo.Rmd | 4 - vignettes/visualisation.Rmd | 33 +++++--- 20 files changed, 233 insertions(+), 172 deletions(-)
Title: Read 'Anki' Flashcard Databases
Description: Read and analyze Anki flashcard collection databases. Provides
functions to access notes, cards, and review logs from 'Anki' 'SQLite'
database with a tidy interface.
Author: Christos Longros [aut, cre]
Maintainer: Christos Longros <chris.longros@gmail.com>
Diff between ankiR versions 0.1.0 dated 2026-01-16 and 0.2.0 dated 2026-01-19
DESCRIPTION | 12 ++++----- MD5 | 10 ++++--- NAMESPACE | 3 ++ R/collection.R | 60 +++++++++++++++++++++++++++++++++++++++++++++ README.md | 37 +++++++++++++++------------ man/anki_cards_fsrs.Rd |only man/fsrs_retrievability.Rd |only 7 files changed, 96 insertions(+), 26 deletions(-)
Title: Threshold Sweep Extensions for Qualitative Comparative Analysis
Description: Provides threshold sweep methods for Qualitative Comparative
Analysis (QCA). Implements Condition Threshold Sweep-Single (CTS-S),
Condition Threshold Sweep-Multiple (CTS-M), Outcome Threshold Sweep (OTS),
and Dual Threshold Sweep (DTS) for systematic exploration of threshold
calibration effects on crisp-set QCA results. These methods extend
traditional robustness approaches by treating threshold variation as an
exploratory tool for discovering causal structures. Built on top of the
'QCA' package by Dusa (2019) <doi:10.1007/978-3-319-75668-4>, with function
arguments following 'QCA' conventions. Based on set-theoretic methods by
Ragin (2008) <doi:10.7208/chicago/9780226702797.001.0001> and established
robustness protocols by Rubinson et al. (2019)
<doi:10.1177/00491241211036158>.
Author: Yuki Toyoda [aut, cre],
Japan Society for the Promotion of Science [fnd]
Maintainer: Yuki Toyoda <yuki.toyoda.ds@hosei.ac.jp>
Diff between TSQCA versions 1.1.0 dated 2026-01-17 and 1.2.0 dated 2026-01-19
DESCRIPTION | 6 MD5 | 40 NAMESPACE | 1 NEWS.md | 69 + R/TSQCA-package.R | 457 +++--- R/tsqca_config_chart.R | 2444 ++++++++++++++++++------------------ R/tsqca_core.R | 41 R/tsqca_report.R | 166 +- README.md | 33 inst/doc/TSQCA_Reproducible_EN.Rmd | 2 inst/doc/TSQCA_Reproducible_EN.html | 9 inst/doc/TSQCA_Tutorial_EN.R | 43 inst/doc/TSQCA_Tutorial_EN.Rmd | 70 + inst/doc/TSQCA_Tutorial_EN.html | 151 +- man/extract_solution_list.Rd | 4 man/generate_report.Rd | 6 man/get_n_solutions.Rd | 4 man/write_full_report.Rd | 3 man/write_simple_report.Rd | 3 vignettes/TSQCA_Reproducible_EN.Rmd | 2 vignettes/TSQCA_Tutorial_EN.Rmd | 70 + 21 files changed, 2056 insertions(+), 1568 deletions(-)
Title: Tools to Process Point Clouds Derived from Terrestrial Laser
Scanning
Description: A set of tools to process and calculate
metrics on point clouds derived from terrestrial LiDAR
(Light Detection and Ranging; TLS). Its creation is based on key
aspects of the TLS application in forestry and ecology.
Currently, the main routines are based on filtering, neighboring
features of points, voxelization, canopy structure,
and the creation of artificial stands. It is written using
data.table and C++ language and in most of the functions it is
possible to use parallel processing to speed-up the routines.
Author: J. Antonio Guzman Q. [cre, aut, ths, cph] ,
Ronny Hernandez [aut] ,
Arturo Sanchez-Azofeifa [dgs, sad]
Maintainer: J. Antonio Guzman Q. <antguz06@gmail.com>
This is a re-admission after prior archival of version 0.2.5.6 dated 2022-12-20
Diff between rTLS versions 0.2.5.6 dated 2022-12-20 and 0.2.6.1 dated 2026-01-19
rTLS-0.2.5.6/rTLS/tests/testthat/Rplots.pdf |only rTLS-0.2.6.1/rTLS/DESCRIPTION | 39 - rTLS-0.2.6.1/rTLS/MD5 | 52 - rTLS-0.2.6.1/rTLS/NAMESPACE | 21 rTLS-0.2.6.1/rTLS/NEWS.md | 4 rTLS-0.2.6.1/rTLS/R/artificial_stand.R | 378 +++++++------- rTLS-0.2.6.1/rTLS/R/canopy_structure.R | 22 rTLS-0.2.6.1/rTLS/R/cartesian_to_polar.R | 2 rTLS-0.2.6.1/rTLS/R/plot_voxels.R | 2 rTLS-0.2.6.1/rTLS/R/rTLS-package.R | 4 rTLS-0.2.6.1/rTLS/R/tree_metrics.R | 45 - rTLS-0.2.6.1/rTLS/README.md | 4 rTLS-0.2.6.1/rTLS/build/vignette.rds |binary rTLS-0.2.6.1/rTLS/inst/CITATION | 21 rTLS-0.2.6.1/rTLS/inst/WORDLIST |only rTLS-0.2.6.1/rTLS/inst/doc/Artificial-stands.R | 2 rTLS-0.2.6.1/rTLS/inst/doc/Artificial-stands.html | 76 +- rTLS-0.2.6.1/rTLS/inst/doc/tree-metrics.R | 2 rTLS-0.2.6.1/rTLS/inst/doc/tree-metrics.html | 18 rTLS-0.2.6.1/rTLS/inst/doc/voxels-fractals.R | 2 rTLS-0.2.6.1/rTLS/inst/doc/voxels-fractals.html | 36 - rTLS-0.2.6.1/rTLS/man/artificial_stand.Rd | 2 rTLS-0.2.6.1/rTLS/man/canopy_structure.Rd | 2 rTLS-0.2.6.1/rTLS/man/plot_voxels.Rd | 2 rTLS-0.2.6.1/rTLS/src/Makevars | 3 rTLS-0.2.6.1/rTLS/src/Makevars.win | 5 rTLS-0.2.6.1/rTLS/src/line_AABB_rcpp.cpp | 121 ++-- rTLS-0.2.6.1/rTLS/tests/testthat/test-geometry_features.R | 31 - 28 files changed, 477 insertions(+), 419 deletions(-)
Title: Read, Write and Edit 'xlsx' Files
Description: Simplifies the creation of 'xlsx' files by
providing a high level interface to writing, styling and editing
worksheets.
Author: Jordan Mark Barbone [aut] ,
Jan Marvin Garbuszus [aut, cre],
Olivier Roy [ctb],
openxlsx authors [cph] ,
Arseny Kapoulkine [ctb, cph]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>
Diff between openxlsx2 versions 1.23 dated 2026-01-16 and 1.23.1 dated 2026-01-19
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 10 ++++++++++ R/wb_styles.R | 23 ++++++++++++++++++----- src/helper_functions.cpp | 1 + src/openxlsx2.h | 2 +- tests/testthat/test-helper-functions.R | 4 ++++ tests/testthat/test-wb_styles.R | 16 ++++++++++++++++ 8 files changed, 60 insertions(+), 16 deletions(-)
Title: Interface allowing R to use OpenCL
Description: This package provides an interface to OpenCL, allowing R to leverage computing power of GPUs and other HPC accelerator devices.
Author: Simon Urbanek [aut, cre, cph] ,
Aaron Puchert [aut]
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between OpenCL versions 0.2-10 dated 2023-12-22 and 0.2-11 dated 2026-01-19
DESCRIPTION | 14 +++++++++----- INSTALL | 14 ++++---------- MD5 | 10 +++++----- NEWS | 14 +++++++++++++- src/buffer.c | 14 ++++++++++++-- src/ocl.c | 15 +++++++++++++-- 6 files changed, 56 insertions(+), 25 deletions(-)
Title: Geospatial Data and Maps for New South Wales, Australia
Description: Geospatial data for creating maps of New South Wales (NSW),
Australia, and some helpers to work with common problems like normalising
postcodes. Registers its data with 'cartographer'.
Author: Carl Suster [aut, cre] ,
Western Sydney Local Health District, NSW Health [cph]
Maintainer: Carl Suster <carl.suster@sydney.edu.au>
Diff between nswgeo versions 0.5.0 dated 2024-12-17 and 0.5.1 dated 2026-01-19
DESCRIPTION | 22 ++++++++++++---------- LICENSE | 4 ++-- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/utils.R | 2 +- README.md | 4 ++-- man/figures/README-cartographer-1.png |binary man/nswgeo-package.Rd | 4 ++-- 8 files changed, 30 insertions(+), 24 deletions(-)
Title: Download and Process Public Domain Works from Project Gutenberg
Description: Download and process public domain works in the Project
Gutenberg collection <https://www.gutenberg.org/>. Includes metadata
for all Project Gutenberg works, so that they can be searched and
retrieved.
Author: Jordan Bradford [aut, cre] ,
Jon Harmon [aut] ,
Myfanwy Johnston [aut],
David Robinson [aut, cph]
Maintainer: Jordan Bradford <jrdnbradford@gmail.com>
Diff between gutenbergr versions 0.4.0 dated 2026-01-12 and 0.4.1 dated 2026-01-19
DESCRIPTION | 8 - MD5 | 25 ++- NEWS.md | 8 + R/gutenberg_mirrors.R | 94 ++++++++++++-- R/zzz.R | 7 - README.md | 11 - man/figures |only man/gutenberg_get_all_mirrors.Rd | 5 man/gutenbergr-package.Rd | 2 tests/testthat/helper-integration-tests.R | 2 tests/testthat/helper-mocks.R | 26 ++++ tests/testthat/test-gutenberg_download.R | 14 -- tests/testthat/test-gutenberg_mirrors.R | 192 +++++++++++++++++------------- tests/testthat/test-zzz.R | 56 -------- 14 files changed, 260 insertions(+), 190 deletions(-)
Title: Data for "Forecasting: Principles and Practice" (2nd Edition)
Description: All data sets required for the examples and exercises
in the book "Forecasting: principles and practice" (2nd ed, 2018)
by Rob J Hyndman and George Athanasopoulos <https://otexts.com/fpp2/>.
All packages required to run the examples are also loaded.
Author: Rob Hyndman [aut, cre, cph],
RStudio [cph]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between fpp2 versions 2.5 dated 2023-02-19 and 2.5.1 dated 2026-01-19
DESCRIPTION | 15 +++++++-------- MD5 | 31 ++++++++++++++++--------------- NEWS.md | 3 +++ R/attach.R | 9 +++++++-- R/conflicts.R | 16 ++++++++++++---- R/data.R | 16 ++++++++-------- README.md | 18 +++++++++--------- man/calls.Rd | 2 +- man/departures.Rd | 2 +- man/figures |only man/fpp2-package.Rd | 8 +++++--- man/gasoline.Rd | 2 +- man/goog.Rd | 2 +- man/hyndsight.Rd | 2 +- man/marathon.Rd | 2 +- man/melsyd.Rd | 2 +- man/uschange.Rd | 2 +- 17 files changed, 75 insertions(+), 57 deletions(-)
Title: Analysis of Overdispersed Data using S3 Methods
Description: Provides functions to analyse overdispersed counts or proportions. These functions should be considered as complements to more sophisticated methods such as generalized estimating equations (GEE) or generalized linear mixed effect models (GLMM). aods3 is an S3 re-implementation of the deprecated S4 package aod.
Author: Matthieu Lesnoff [aut],
Renaud Lancelot [aut],
Aurelie Siberchicot [ctb, cre]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between aods3 versions 0.5 dated 2024-11-06 and 0.6 dated 2026-01-19
aods3-0.5/aods3/NEWS |only aods3-0.6/aods3/DESCRIPTION | 11 ++++++----- aods3-0.6/aods3/MD5 | 4 ++-- aods3-0.6/aods3/inst |only 4 files changed, 8 insertions(+), 7 deletions(-)
Title: Smartly Create Maps from R Objects
Description: Preview spatial data as 'leaflet' maps with minimal
effort. smartmap is optimized for interactive use and distinguishes itself
from similar packages because it does not need real spatial ('sp' or 'sf')
objects an input; instead, it tries to automatically coerce everything that
looks like spatial data to sf objects or leaflet maps. It - for example -
supports direct mapping of: a vector containing a single coordinate pair,
a two column matrix, a data.frame with longitude and latitude columns, or
the path or URL to a (possibly compressed) 'shapefile'.
Author: Stefan Fleck [aut, cre]
Maintainer: Stefan Fleck <stefan.b.fleck@gmail.com>
Diff between smartmap versions 0.1.1 dated 2020-07-02 and 0.2.0 dated 2026-01-19
DESCRIPTION | 17 LICENSE | 4 MD5 | 50 - NAMESPACE | 59 - NEWS.md | 15 R/coord_matrix.R | 624 +++++++------- R/smap.R | 464 +++++------ R/smart_as_sf.R | 350 ++++---- R/smartmap-package.R | 58 - R/utils-sfmisc.R | 1552 +++++++++++++++++++------------------ R/utils.R | 36 README.md | 114 +- build |only inst/WORDLIST | 16 inst/doc |only man/as_coord_matrix.Rd | 126 +-- man/smap.Rd | 220 ++--- man/smart_as_sf.Rd | 100 +- man/smartmap-package.Rd | 45 - man/st_as_sf.Rd | 46 - man/st_as_sfc.Rd | 46 - man/unsf.Rd |only tests/testthat.R | 8 tests/testthat/test_coord_matrix.R | 144 +-- tests/testthat/test_smap.R | 209 ++-- tests/testthat/test_smart_as_sf.R | 73 - vignettes |only 27 files changed, 2244 insertions(+), 2132 deletions(-)
Title: SA Counterparty Credit Risk under CRR2
Description: Computes the Exposure-At-Default based on the standardized approach
of CRR2 (SA-CCR). The simplified version of SA-CCR has been included, as well as the OEM methodology.
Multiple trade types of all the five major asset classes are being supported including the Other Exposure and, given the inheritance-
based structure of the application, the addition of further trade types
is straightforward. The application returns a list of trees per Counterparty and CSA after
automatically separating the trades based on the Counterparty, the CSAs, the hedging sets, the
netting sets and the risk factors. The basis and volatility transactions are
also identified and treated in specific hedging sets whereby the corresponding
penalty factors are applied. All the examples appearing on the
regulatory papers (both for the margined and the unmargined workflow) have been
implemented including the latest CRR2 developments.
Author: Tasos Grivas [aut, cre]
Maintainer: Tasos Grivas <info@openriskcalculator.com>
Diff between SACCR versions 3.3 dated 2025-05-13 and 3.4 dated 2026-01-19
DESCRIPTION | 11 ++++++----- MD5 | 8 +++++--- NAMESPACE | 1 + R/ExampleFXHedge.R |only man/CalcPFE.Rd | 2 +- man/ExampleFXHedge.Rd |only 6 files changed, 13 insertions(+), 9 deletions(-)
Title: 'Shiny' Applications for the R Package 'Luminescence'
Description: A collection of 'shiny' applications for the R package
'Luminescence'. These mainly, but not exclusively, include applications for
plotting chronometric data from e.g. luminescence or radiocarbon dating. It
further provides access to bootstraps tooltip and popover functionality and
contains the 'jscolor.js' library with a custom 'shiny' output binding.
Author: Christoph Burow [aut, cre] ,
Urs Tilmann Wolpert [aut],
Sebastian Kreutzer [aut] ,
Marco Colombo [aut] ,
R Luminescence Package Team [ctb],
Jan Odvarko [cph] ,
AnalytixWare [cph] ,
RStudio [cph]
Maintainer: Christoph Burow <christoph.burow@gmx.net>
Diff between RLumShiny versions 0.2.6 dated 2025-12-19 and 0.2.7 dated 2026-01-19
DESCRIPTION | 8 ++-- MD5 | 60 +++++++++++++++++----------------- NEWS.md | 11 ++++++ R/helpers-server.R | 8 +++- R/helpers-ui.R | 6 +++ inst/shiny/KDE/server.R | 6 +-- inst/shiny/abanico/server.R | 6 +-- inst/shiny/abanico/ui.R | 8 ++-- inst/shiny/aliquotsize/server.R | 2 - inst/shiny/cosmicdose/server.R | 2 - inst/shiny/doserecovery/server.R | 6 +-- inst/shiny/doserecovery/ui.R | 8 ++-- inst/shiny/doseresponsecurve/server.R | 4 +- inst/shiny/fading/server.R | 6 +-- inst/shiny/fastratio/server.R | 4 +- inst/shiny/fastratio/ui.R | 4 +- inst/shiny/finitemixture/server.R | 4 +- inst/shiny/histogram/server.R | 4 +- inst/shiny/histogram/ui.R | 4 +- inst/shiny/huntley2006/server.R | 4 +- inst/shiny/irsarRF/server.R | 2 - inst/shiny/lmcurve/server.R | 6 +-- inst/shiny/portableOSL/server.R | 2 - inst/shiny/portableOSL/ui.R | 4 +- inst/shiny/radialplot/server.R | 6 +-- inst/shiny/radialplot/ui.R | 8 ++-- inst/shiny/sarCWOSL/server.R | 19 ++++++---- inst/shiny/surfaceexposure/server.R | 2 - inst/shiny/surfaceexposure/ui.R | 4 +- inst/shiny/transformCW/server.R | 4 +- inst/shiny/transformCW/ui.R | 4 +- 31 files changed, 127 insertions(+), 99 deletions(-)
Title: Find the Pole of Inaccessibility (Visual Center) of a Polygon
Description: A wrapper around the C++ library 'polylabel' from 'Mapbox',
providing an efficient routine for finding the approximate pole of
inaccessibility of a polygon, which usually serves as an excellent candidate
for labeling of a polygon.
Author: Johan Larsson [aut, cre] ,
Kent Johnson [ctb],
Mapbox [cph]
Maintainer: Johan Larsson <johanlarsson@outlook.com>
Diff between polylabelr versions 0.3.0 dated 2024-11-19 and 1.0.0 dated 2026-01-19
DESCRIPTION | 11 ++--- MD5 | 14 +++--- NEWS.md | 29 ++++++++------ build/partial.rdb |binary inst/include/mapbox/variant.hpp | 10 ++++ tests/spelling.R | 9 +++- tests/testthat/helper_point_in_polygon.R | 11 +++-- tests/testthat/test-poi-sf.R | 63 ++++++++++++++++++++++++++++++- 8 files changed, 116 insertions(+), 31 deletions(-)
Title: 'Matrix-Based Flexible Project Planning'
Description: Matrix-Based Flexible Project Planning. This package models, plans, and schedules flexible, such as agile, extreme, and hybrid project plans. The package contains project planning, scheduling, and risk assessment functions. Kosztyan (2022) <doi:10.1016/j.softx.2022.100973>.
Author: Zsolt T. Kosztyan [aut, cre],
Aamir Sagir [aut]
Maintainer: Zsolt T. Kosztyan <kosztyan.zsolt@gtk.uni-pannon.hu>
Diff between mfpp versions 0.0.8 dated 2024-12-04 and 0.0.9 dated 2026-01-19
DESCRIPTION | 6 +++--- MD5 | 6 +++--- data/Batselier.rda |binary inst/NEWS | 4 ++++ 4 files changed, 10 insertions(+), 6 deletions(-)
Title: Maximum Entropy Bootstrap for Time Series
Description: Maximum entropy density based dependent data bootstrap.
An algorithm is provided to create a population of time series (ensemble)
without assuming stationarity. The reference paper (Vinod, H.D., 2004
<DOI:10.1016/j.jempfin.2003.06.002>) explains how the algorithm satisfies
the ergodic theorem and the central limit theorem.
Author: Hrishikesh D. Vinod [aut],
Javier Lopez-de-Lacalle [aut],
Fred Viole [aut, cre]
Maintainer: Fred Viole <ovvo.open.source@gmail.com>
Diff between meboot versions 1.4-9.5 dated 2026-01-10 and 1.5 dated 2026-01-19
DESCRIPTION | 12 +-- MD5 | 10 +- NAMESPACE | 1 R/mebootSpear.R | 131 ++++++++++++++---------------------- inst/doc/Toy_Example_Exposition.pdf |binary inst/doc/meboot.pdf |binary 6 files changed, 63 insertions(+), 91 deletions(-)
Title: Fast Data Aggregation, Modification, and Filtering with Pipes
and 'data.table'
Description: Provides pipe-style interface for 'data.table'. Package preserves all 'data.table' features without
significant impact on performance. 'let' and 'take' functions are simplified interfaces for most common data
manipulation tasks. For example, you can write 'take(mtcars, mean(mpg), by = am)' for aggregation or
'let(mtcars, hp_wt = hp/wt, hp_wt_mpg = hp_wt/mpg)' for modification. Use 'take_if/let_if' for conditional
aggregation/modification. Additionally there are some conveniences such as automatic 'data.frame'
conversion to 'data.table'.
Author: Gregory Demin [aut, cre]
Maintainer: Gregory Demin <gdemin@gmail.com>
Diff between maditr versions 0.8.6 dated 2025-08-30 and 0.8.7 dated 2026-01-19
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS | 4 ++++ R/coalesce.R | 3 ++- build/vignette.rds |binary man/coalesce.Rd | 4 +++- man/reexports.Rd | 2 +- 7 files changed, 21 insertions(+), 14 deletions(-)
Title: Leave One Out Kernel Density Estimates for Outlier Detection
Description: Outlier detection using leave-one-out kernel density estimates and
extreme value theory. The bandwidth for kernel density estimates is computed
using persistent homology, a technique in topological data analysis. Using
peak-over-threshold method, a generalized Pareto distribution is fitted to
the log of leave-one-out kde values to identify outliers.
Author: Sevvandi Kandanaarachchi [aut, cre] ,
Rob Hyndman [aut] ,
Chris Fraley [ctb]
Maintainer: Sevvandi Kandanaarachchi <sevvandik@gmail.com>
Diff between lookout versions 0.1.4 dated 2022-10-13 and 2.0.0 dated 2026-01-19
DESCRIPTION | 28 ++-- MD5 | 41 +++--- NAMESPACE | 2 NEWS.md |only R/autoplot_lookout.R | 41 +++--- R/autoplot_persistence.R | 32 +++-- R/bandwidth.R |only R/lookout_ts.R | 28 ++-- R/lookoutliers.R | 194 +++++++++++++++++++------------ R/mvscale.R |only R/outlier_persistence.R | 85 +++++++++---- R/print.R | 3 R/utils.R | 16 -- README.md | 31 +++- man/autoplot.lookoutliers.Rd | 14 +- man/autoplot.persistingoutliers.Rd | 4 man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary man/find_tda_bw.Rd |only man/lookout-package.Rd | 2 man/lookout.Rd | 64 ++++++++-- man/lookout_ts.Rd | 14 +- man/mvscale.Rd |only man/persisting_outliers.Rd | 38 +++--- 24 files changed, 395 insertions(+), 242 deletions(-)
Title: Exponential Integral and Incomplete Gamma Function
Description: The exponential integrals E_1(x), E_2(x), E_n(x) and
Ei(x), and the incomplete gamma function G(a, x) defined for
negative values of its first argument. The package also gives easy
access to the underlying C routines through an API; see the package
vignette for details. A test package included in sub-directory
example_API provides an implementation. C routines derived from the
GNU Scientific Library <https://www.gnu.org/software/gsl/>.
Author: Vincent Goulet [cre, aut],
Gerard Jungman [aut] ,
Brian Gough [aut] ,
Jeffrey A. Ryan [aut] ,
Robert Gentleman [aut] ,
Ross Ihaka [aut] ,
R Core Team [aut] ,
R Foundation [aut]
Maintainer: Vincent Goulet <vincent.goulet@act.ulaval.ca>
Diff between expint versions 0.1-9 dated 2025-11-08 and 0.2-0 dated 2026-01-19
DESCRIPTION | 12 ++-- MD5 | 32 ++++++------- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 2 inst/NEWS.Rd | 12 ++++ inst/doc/expint.R | 10 ++-- inst/doc/expint.Rnw | 96 ++++++++++++++++++++------------------- inst/doc/expint.pdf |binary po/expint.pot | 22 ++++----- po/fr.po | 22 ++++----- src/expint.c | 6 +- src/gamma_inc.c | 118 +++++-------------------------------------------- tests/gammainc-tests.R | 10 ++++ vignettes/Makefile | 2 vignettes/expint.Rnw | 96 ++++++++++++++++++++------------------- vignettes/expint.bib | 10 ++-- 17 files changed, 193 insertions(+), 257 deletions(-)
Title: Data Set for the 'benchmarkme' Package
Description: Crowd sourced benchmarks from running the 'benchmarkme'
package.
Author: Colin Gillespie [aut, cre]
Maintainer: Colin Gillespie <csgillespie@gmail.com>
Diff between benchmarkmeData versions 1.0.4 dated 2020-04-23 and 2.0.0 dated 2026-01-19
DESCRIPTION | 26 ++-- MD5 | 31 ++--- NAMESPACE | 1 NEWS.md | 9 + R/benchmarkme_data-package.R | 10 - R/datatable.R | 22 ++- R/get_benchmarks.R | 14 +- R/make_data_set.R | 52 ++++++--- R/move_files.R | 11 + R/nice_palette.R | 14 +- R/plot_past.R | 102 +++++++++++------- R/select_results.R | 40 +++---- inst/shinyapps_io/dashboard.Rmd | 221 ++++++++++++++++++++++++++-------------- inst/shinyapps_io/functions.R | 59 +++++++--- man/benchmarkmeData-package.Rd | 21 +-- man/benchmarkmeData.Rd |only man/select_results.Rd | 2 17 files changed, 400 insertions(+), 235 deletions(-)
More information about benchmarkmeData at CRAN
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Title: Bayesian Cure Rate Modeling for Time-to-Event Data
Description: A fully Bayesian approach in order to estimate a general family of cure rate models under the presence of covariates, see Papastamoulis and Milienos (2024) <doi:10.1007/s11749-024-00942-w> and Papastamoulis and Milienos (2024b) <doi:10.48550/arXiv.2409.10221>. The promotion time can be modelled (a) parametrically using typical distributional assumptions for time to event data (including the Weibull, Exponential, Gompertz, log-Logistic distributions), or (b) semiparametrically using finite mixtures of distributions. In both cases, user-defined families of distributions are allowed under some specific requirements. Posterior inference is carried out by constructing a Metropolis-coupled Markov chain Monte Carlo (MCMC) sampler, which combines Gibbs sampling for the latent cure indicators and Metropolis-Hastings steps with Langevin diffusion dynamics for parameter updates. The main MCMC algorithm is embedded within a parallel tempering scheme by considering heated versions of th [...truncated...]
Author: Panagiotis Papastamoulis [aut, cre] ,
Fotios Milienos [aut]
Maintainer: Panagiotis Papastamoulis <papapast@yahoo.gr>
Diff between bayesCureRateModel versions 1.5 dated 2025-10-31 and 1.6 dated 2026-01-19
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- build/partial.rdb |binary inst/CITATION | 6 +++--- man/Surv.Rd | 6 +++--- 5 files changed, 14 insertions(+), 14 deletions(-)
More information about bayesCureRateModel at CRAN
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Title: Bayesian Additive Regression Trees
Description: An advanced implementation of Bayesian Additive Regression Trees with expanded features for data analysis and visualization.
Author: Adam Kapelner [aut, cre] ,
Justin Bleich [aut]
Maintainer: Adam Kapelner <kapelner@qc.cuny.edu>
Diff between bartMachine versions 1.4 dated 2026-01-17 and 1.4.1 dated 2026-01-19
CHANGELOG | 3 ++ DESCRIPTION | 17 ++++++------ MD5 | 39 ++++++++++++++-------------- R/bartMachine.R | 4 +- R/bart_package_f_tests.R | 2 - R/bart_package_plots.R | 6 ++-- R/bart_package_predicts.R | 2 - R/bart_package_variable_selection.R | 4 +- R/zzz.R | 49 ++++++++++++++++++++++++++++-------- build/partial.rdb |only inst/doc/bartMachine.pdf |binary man/bartMachine-package.Rd | 2 - man/bartMachine.Rd | 2 - man/bartMachineCV.Rd | 2 - man/calc_prediction_intervals.Rd | 2 - man/cov_importance_test.Rd | 2 - man/interaction_investigator.Rd | 2 - man/investigate_var_importance.Rd | 2 - man/pd_plot.Rd | 2 - man/var_selection_by_permute.Rd | 2 - man/var_selection_by_permute_cv.Rd | 2 - 21 files changed, 90 insertions(+), 56 deletions(-)
Title: An Interface to the 'AutoNavi Maps' API Geocoding Services
Description: Getting and parsing data of location geocode/reverse-geocode and administrative regions from 'AutoNavi Maps'<https://lbs.amap.com/api/webservice/summary> API.
Author: Han Chen [aut, cre],
Wanyanhan Jiang [ctb]
Maintainer: Han Chen <chenhan28@gmail.com>
Diff between amapGeocode versions 0.6.0 dated 2021-04-19 and 0.9.0 dated 2026-01-19
amapGeocode-0.6.0/amapGeocode/R/utils-pipe.R |only amapGeocode-0.6.0/amapGeocode/man/convertCoord.individual.Rd |only amapGeocode-0.6.0/amapGeocode/man/getAdmin.individual.Rd |only amapGeocode-0.6.0/amapGeocode/man/getCoord.individual.Rd |only amapGeocode-0.6.0/amapGeocode/man/getLocation.individual.Rd |only amapGeocode-0.6.0/amapGeocode/man/pipe.Rd |only amapGeocode-0.9.0/amapGeocode/DESCRIPTION | 19 amapGeocode-0.9.0/amapGeocode/MD5 | 90 - amapGeocode-0.9.0/amapGeocode/NAMESPACE | 31 amapGeocode-0.9.0/amapGeocode/NEWS.md | 26 amapGeocode-0.9.0/amapGeocode/R/amapGeocode-package.R |only amapGeocode-0.9.0/amapGeocode/R/amap_http.R |only amapGeocode-0.9.0/amapGeocode/R/convertCoord.R | 395 ++--- amapGeocode-0.9.0/amapGeocode/R/getAdmin.R | 588 +++---- amapGeocode-0.9.0/amapGeocode/R/getCoord.R | 647 ++++---- amapGeocode-0.9.0/amapGeocode/R/getLocation.R | 781 +++++----- amapGeocode-0.9.0/amapGeocode/R/helpers.R | 8 amapGeocode-0.9.0/amapGeocode/README.md | 644 +++----- amapGeocode-0.9.0/amapGeocode/build/vignette.rds |binary amapGeocode-0.9.0/amapGeocode/inst/doc/Introduction_to_amapGeocode.R | 12 amapGeocode-0.9.0/amapGeocode/inst/doc/Introduction_to_amapGeocode.Rmd | 26 amapGeocode-0.9.0/amapGeocode/inst/doc/Introduction_to_amapGeocode.html | 716 ++++++--- amapGeocode-0.9.0/amapGeocode/man/amapGeocode-package.Rd |only amapGeocode-0.9.0/amapGeocode/man/amap_config.Rd |only amapGeocode-0.9.0/amapGeocode/man/amap_sign.Rd |only amapGeocode-0.9.0/amapGeocode/man/convertCoord.Rd | 135 - amapGeocode-0.9.0/amapGeocode/man/extractAdmin.Rd | 81 - amapGeocode-0.9.0/amapGeocode/man/extractConvertCoord.Rd | 70 amapGeocode-0.9.0/amapGeocode/man/extractCoord.Rd | 33 amapGeocode-0.9.0/amapGeocode/man/extractLocation.Rd | 75 amapGeocode-0.9.0/amapGeocode/man/getAdmin.Rd | 194 +- amapGeocode-0.9.0/amapGeocode/man/getCoord.Rd | 174 +- amapGeocode-0.9.0/amapGeocode/man/getLocation.Rd | 221 +- amapGeocode-0.9.0/amapGeocode/man/with_amap_signature.Rd |only amapGeocode-0.9.0/amapGeocode/tests/fixtures |only amapGeocode-0.9.0/amapGeocode/tests/testthat/fixtures |only amapGeocode-0.9.0/amapGeocode/tests/testthat/helper-vcr.R |only amapGeocode-0.9.0/amapGeocode/tests/testthat/test_convertCoord.R | 35 amapGeocode-0.9.0/amapGeocode/tests/testthat/test_getAdmin.R | 53 amapGeocode-0.9.0/amapGeocode/tests/testthat/test_getCoord.R | 114 - amapGeocode-0.9.0/amapGeocode/tests/testthat/test_getLocation.R | 81 - amapGeocode-0.9.0/amapGeocode/tests/testthat/test_signature.R |only amapGeocode-0.9.0/amapGeocode/vignettes/Introduction_to_amapGeocode.Rmd | 26 43 files changed, 2747 insertions(+), 2528 deletions(-)
Title: An 'Shiny' App for Exploring scRNA-seq Data Processed in
'Seurat'
Description: A simple, one-command package which runs an interactive dashboard capable of common visualizations for single cell RNA-seq. 'SeuratExplorer' requires a processed 'Seurat' object, which is saved as 'rds' or 'qs2' file.
Author: Yongchao Zhang [aut, cre]
Maintainer: Yongchao Zhang <zhangyongchao@nibs.ac.cn>
Diff between SeuratExplorer versions 0.1.0 dated 2025-03-13 and 0.1.2 dated 2026-01-19
SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/DEGs-1.jpg |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/DEGs-2.jpg |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/DEGs-3.jpg |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/Dimplot-splited.jpg |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/Dotplot-1.jpg |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/Featureplot-split.jpg |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/Heatmap-1.jpg |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/Ridgeplot-2.jpg |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/Ridgeplot-3.jpg |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/Vlnplot-1.jpg |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/Vlnplot-2.jpg |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/averagedheatmap.png |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/cellratio-1.jpg |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/cellratio-2.jpg |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/dimplot.jpg |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/dotplot-splited-1.jpg |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/featureplot-1-with-label.jpg |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/featureplot-1.jpg |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/loading-after.jpg |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/loading-before.jpg |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/ridgeplot-1.jpg |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/vlnplot-splited-1.jpg |only SeuratExplorer-0.1.0/SeuratExplorer/inst/extdata/www/vlnplot-splited-2.jpg |only SeuratExplorer-0.1.2/SeuratExplorer/DESCRIPTION | 24 SeuratExplorer-0.1.2/SeuratExplorer/MD5 | 67 SeuratExplorer-0.1.2/SeuratExplorer/NAMESPACE | 8 SeuratExplorer-0.1.2/SeuratExplorer/R/functions.R | 580 +-- SeuratExplorer-0.1.2/SeuratExplorer/R/launch.R | 17 SeuratExplorer-0.1.2/SeuratExplorer/R/server.R | 1886 +++++++--- SeuratExplorer-0.1.2/SeuratExplorer/R/ui.R | 226 - SeuratExplorer-0.1.2/SeuratExplorer/README.md | 512 ++ SeuratExplorer-0.1.2/SeuratExplorer/inst/extdata/www/CellRatio-Splited.png |only SeuratExplorer-0.1.2/SeuratExplorer/inst/extdata/www/CellRatio.png |only SeuratExplorer-0.1.2/SeuratExplorer/inst/extdata/www/DEGs-1.png |only SeuratExplorer-0.1.2/SeuratExplorer/inst/extdata/www/DEGs-2.png |only SeuratExplorer-0.1.2/SeuratExplorer/inst/extdata/www/Dimplot-splited.png |only SeuratExplorer-0.1.2/SeuratExplorer/inst/extdata/www/DotPlot-Splited.png |only SeuratExplorer-0.1.2/SeuratExplorer/inst/extdata/www/DotPlot.png |only SeuratExplorer-0.1.2/SeuratExplorer/inst/extdata/www/Featureplot-splited.png |only SeuratExplorer-0.1.2/SeuratExplorer/inst/extdata/www/Featureplot.png |only SeuratExplorer-0.1.2/SeuratExplorer/inst/extdata/www/Heatmap-CellLevel.png |only SeuratExplorer-0.1.2/SeuratExplorer/inst/extdata/www/Heatmap-GroupLevel-2.png |only SeuratExplorer-0.1.2/SeuratExplorer/inst/extdata/www/Heatmap-GroupLevel.png |only SeuratExplorer-0.1.2/SeuratExplorer/inst/extdata/www/RidgePlot.png |only SeuratExplorer-0.1.2/SeuratExplorer/inst/extdata/www/ViolinPlot-Stack.png |only SeuratExplorer-0.1.2/SeuratExplorer/inst/extdata/www/ViolinPlot-splited-Stack.png |only SeuratExplorer-0.1.2/SeuratExplorer/inst/extdata/www/ViolinPlot-splited.png |only SeuratExplorer-0.1.2/SeuratExplorer/inst/extdata/www/ViolinPlot.png |only SeuratExplorer-0.1.2/SeuratExplorer/inst/extdata/www/upload-data.png |only SeuratExplorer-0.1.2/SeuratExplorer/man/cellRatioPlot.Rd | 3 SeuratExplorer-0.1.2/SeuratExplorer/man/getColors.Rd | 2 SeuratExplorer-0.1.2/SeuratExplorer/man/get_counts_matrix.Rd |only SeuratExplorer-0.1.2/SeuratExplorer/man/get_data_matrix.Rd |only SeuratExplorer-0.1.2/SeuratExplorer/man/join_layers_if_needed.Rd |only SeuratExplorer-0.1.2/SeuratExplorer/man/launchSeuratExplorer.Rd | 13 SeuratExplorer-0.1.2/SeuratExplorer/man/prepare_gene_annotations.Rd |only SeuratExplorer-0.1.2/SeuratExplorer/man/top_genes.Rd | 6 57 files changed, 2502 insertions(+), 842 deletions(-)
More information about SeuratExplorer at CRAN
Permanent link