Title: Area-to-Area Kriging
Description: Point-scale variogram deconvolution from irregular/regular spatial support according to Goovaerts, P., (2008) <doi: 10.1007/s11004-007-9129-1>; ordinary area-to-area (co)Kriging and area-to-point (co)Kriging.
Author: Maogui Hu [aut, cre],
Yanwei Huang [ctb],
Roger Bivand [ctb]
Maintainer: Maogui Hu <humg@lreis.ac.cn>
Diff between atakrig versions 0.9.8.1 dated 2023-10-09 and 0.9.8.2 dated 2026-01-21
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/ataCoKriging.Rd | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-24 1.1.1
2015-04-30 1.1
2013-03-01 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-01 0.6
2016-11-20 0.5
Title: Strength Training Manual R-Language Functions
Description: Strength training prescription using percent-based approach requires
numerous computations and assumptions. 'STMr' package allow users to estimate
individual reps-max relationships, implement various progression tables, and
create numerous set and rep schemes. The 'STMr' package is originally created as
a tool to help writing Jovanović M. (2020) Strength Training Manual
<ISBN:979-8604459898>.
Author: Mladen Jovanovic [aut, cre]
Maintainer: Mladen Jovanovic <coach.mladen.jovanovic@gmail.com>
Diff between STMr versions 0.1.6 dated 2023-11-02 and 0.1.7 dated 2026-01-21
DESCRIPTION | 8 LICENSE | 2 MD5 | 151 ++++++++------- NAMESPACE | 2 NEWS.md | 13 + R/adj-perc-1RM.R | 3 R/adj-reps.R | 3 R/create-example.R | 4 R/estimate-functions.R | 40 +--- R/estimate-mixed-functions.R | 42 ++-- R/estimate-quantile-functions.R | 42 ++-- R/estimate-rolling.R | 1 R/generate-progression-table.R | 5 R/get-perc-1RM.R | 1 R/get-reps.R | 1 R/plot-progression-table.R | 17 - R/plot-vertical.R | 2 R/progression-table-DI.R | 2 R/progression-table-RIR.R | 28 +- R/progression-table-perc-MR.R | 39 +++ R/progression-table-perc-drop.R | 27 +- R/progression-table-rel-int.R | 2 R/progression-table-variable-DI.R |only R/progression-table-variable-RIR.R |only R/progression-table.R | 6 R/release-S3.R | 1 R/release.R | 1 R/schemes-S3.R | 7 R/schemes.R | 1 R/utils.R | 61 +++++- R/vertical-planning.R | 3 README.md | 293 +++++++++++++++--------------- inst/CITATION | 4 man/adj_perc_1RM.Rd | 3 man/adj_reps.Rd | 3 man/create_example.Rd | 3 man/figures/README-unnamed-chunk-15-1.png |binary man/figures/README-unnamed-chunk-16-1.png |binary man/figures/README-unnamed-chunk-17-1.png |binary man/figures/README-unnamed-chunk-18-1.png |binary man/figures/README-unnamed-chunk-19-1.png |only man/figures/README-unnamed-chunk-23-1.png |only man/figures/README-unnamed-chunk-25-1.png |binary man/figures/README-unnamed-chunk-26-1.png |binary man/figures/README-unnamed-chunk-27-1.png |binary man/figures/README-unnamed-chunk-28-1.png |binary man/figures/README-unnamed-chunk-29-1.png |binary man/figures/README-unnamed-chunk-30-1.png |only man/figures/README-unnamed-chunk-35-1.png |binary man/figures/README-unnamed-chunk-36-1.png |binary man/figures/README-unnamed-chunk-37-1.png |binary man/figures/README-unnamed-chunk-38-1.png |binary man/figures/README-unnamed-chunk-39-1.png |binary man/figures/README-unnamed-chunk-40-1.png |binary man/figures/README-unnamed-chunk-41-1.png |binary man/figures/README-unnamed-chunk-42-1.png |binary man/figures/README-unnamed-chunk-43-1.png |binary man/figures/README-unnamed-chunk-43-2.png |only man/figures/README-unnamed-chunk-43-3.png |only man/figures/README-unnamed-chunk-44-1.png |binary man/figures/README-unnamed-chunk-45-1.png |binary man/figures/README-unnamed-chunk-46-1.png |binary man/figures/README-unnamed-chunk-47-1.png |only man/figures/README-unnamed-chunk-50-1.png |only man/figures/README-unnamed-chunk-53-1.png |only man/figures/README-unnamed-chunk-55-1.png |only man/figures/README-unnamed-chunk-57-1.png |only man/figures/README-unnamed-chunk-59-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-60-1.png |only man/figures/README-unnamed-chunk-62-1.png |binary man/figures/README-unnamed-chunk-64-1.png |binary man/figures/README-unnamed-chunk-65-1.png |binary man/figures/README-unnamed-chunk-66-1.png |binary man/figures/README-unnamed-chunk-67-1.png |binary man/figures/README-unnamed-chunk-68-1.png |binary man/figures/README-unnamed-chunk-69-1.png |binary man/figures/README-unnamed-chunk-70-1.png |binary man/figures/README-unnamed-chunk-71-1.png |binary man/figures/README-unnamed-chunk-72-1.png |binary man/figures/README-unnamed-chunk-73-1.png |only man/plot_progression_table.Rd | 4 man/progression_table.Rd | 155 +++++++++++++++ man/sig_pad.Rd |only 84 files changed, 613 insertions(+), 367 deletions(-)
Title: Extensible Data Structures for Multivariate Analysis
Description: Provides a set of basic and extensible data structures and functions for multivariate analysis, including dimensionality reduction techniques, projection methods, and preprocessing functions. The aim of this package is to offer a flexible and user-friendly framework for multivariate analysis that can be easily extended for custom requirements and specific data analysis tasks.
Author: Bradley Buchsbaum [aut, cre]
Maintainer: Bradley Buchsbaum <brad.buchsbaum@gmail.com>
Diff between multivarious versions 0.3.0 dated 2026-01-21 and 0.3.1 dated 2026-01-21
DESCRIPTION | 6 - MD5 | 24 ++--- NEWS.md | 17 +++ inst/doc/Extending.R | 95 ++++++--------------- inst/doc/Extending.Rmd | 115 ++++++++----------------- inst/doc/Extending.html | 175 +++++++++++++++------------------------ inst/doc/Multiblock.html | 2 inst/doc/Nystrom.html | 4 inst/doc/Partial_Projection.html | 2 inst/doc/PreProcessing.html | 2 inst/doc/SVD_PCA.html | 2 man/cPCAplus.Rd | 8 + vignettes/Extending.Rmd | 115 ++++++++----------------- 13 files changed, 220 insertions(+), 347 deletions(-)
Title: Equal-Area Hex Grids on the 'Snyder' 'ISEA' 'Icosahedron'
Description: Provides functions to build and use equal-area hexagonal discrete
global grids using the 'Snyder' 'ISEA' projection ('Snyder' 1992
<doi:10.3138/27H7-8K88-4882-1752>). Implements the 'ISEA' discrete global grid
system ('Sahr', 'White' and 'Kimerling' 2003 <doi:10.1559/152304003100011090>).
Includes a fast 'C++' core for projection and aperture quantization, and
'sf'/'terra'-compatible R wrappers for grid generation and coordinate assignment.
Output is compatible with 'dggridR' for interoperability.
Author: Gilles Colling [aut, cre, cph]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between hexify versions 0.3.3 dated 2026-01-20 and 0.3.8 dated 2026-01-21
DESCRIPTION | 6 MD5 | 95 - NEWS.md | 43 R/hexify_map.R | 2 R/plot_methods.R | 24 README.md | 196 ++- inst/doc/quickstart.html | 4 inst/doc/visualization.html | 4 inst/doc/workflows.R | 3 inst/doc/workflows.Rmd | 3 inst/doc/workflows.html | 33 man/figures |only man/plot-HexData-missing-method.Rd | 24 src/coordinate_transforms.cpp | 7 src/projection_forward.cpp | 138 ++ tests/testthat-full |only tests/testthat/Rplots.pdf |binary tests/testthat/fixtures |only tests/testthat/generate_cache.R |only tests/testthat/test-aperture-3.R | 500 ++++---- tests/testthat/test-aperture-4.R | 390 +++--- tests/testthat/test-aperture-7.R | 359 +++-- tests/testthat/test-aperture-mixed.R | 645 +++++----- tests/testthat/test-assign.R | 1 tests/testthat/test-cell-id.R | 541 ++++---- tests/testthat/test-classes.R | 847 ++++++------- tests/testthat/test-coercion.R | 261 ++-- tests/testthat/test-constants.R | 1 tests/testthat/test-constructors.R | 305 ++--- tests/testthat/test-conversions.R | 1585 +++++++++++++------------- tests/testthat/test-core.R |only tests/testthat/test-dggrid-compat-functions.R | 289 ++-- tests/testthat/test-dggrid-compat.R | 668 +++++----- tests/testthat/test-grid-helpers.R | 320 ++--- tests/testthat/test-grid-wrappers.R | 3 tests/testthat/test-grid.R | 1 tests/testthat/test-hexify-function.R | 1 tests/testthat/test-hexify-heatmap.R | 641 +++++----- tests/testthat/test-hierarchical-index.R | 241 +-- tests/testthat/test-icosahedron.R | 301 ++-- tests/testthat/test-index-utils.R | 1 tests/testthat/test-index-z3.R | 22 tests/testthat/test-index-z7.R | 1 tests/testthat/test-index-zorder.R | 44 tests/testthat/test-plot-methods.R | 681 +++++------ tests/testthat/test-polygons.R | 4 tests/testthat/test-projection-forward.R | 402 +++--- tests/testthat/test-projection-inverse.R | 730 ++++++----- tests/testthat/test-stats.R | 1 tests/testthat/test-visualization.R | 1520 ++++++++++++------------ vignettes/workflows.Rmd | 3 51 files changed, 6134 insertions(+), 5757 deletions(-)
Title: Computational Test for Conditional Independence
Description: Tool for performing computational testing for conditional independence between variables in a dataset. 'CCI' implements permutation in combination with Monte Carlo Cross-Validation in generating null distributions and test statistics. For more details see Computational Test for Conditional Independence (2024) <doi:10.3390/a17080323>.
Author: Christian Thorjussen [aut, cre] ,
Kristian Hovde Liland [aut]
Maintainer: Christian Thorjussen <christianbern@gmail.com>
Diff between CCI versions 0.3.4 dated 2025-09-11 and 0.3.6 dated 2026-01-21
DESCRIPTION | 19 MD5 | 55 - NAMESPACE | 8 R/CCI.direction.R | 82 +- R/CCI.test.R | 131 ++- R/QQplot.R | 33 R/perm.test.R | 81 +- R/plot.R | 2 R/reports.R | 4 R/test.gen.R | 157 ++-- R/utils.R | 211 +++++ R/wrappers.R | 560 +++++++++++++-- README.md | 524 +++++++------- build |only inst/doc |only man/CCI.test.Rd | 43 + man/QQplot.Rd | 3 man/add_interaction_terms.Rd | 4 man/is_categorical_Z_any.Rd |only man/make_strata_from_categorical_Z.Rd |only man/perm.test.Rd | 58 - man/permute_within_strata.Rd |only man/plot.CCI.Rd | 2 man/test.gen.Rd | 54 + man/unclean_formula.Rd |only man/wrapper_knn.Rd |only man/wrapper_ranger.Rd | 92 +- man/wrapper_svm.Rd | 5 man/wrapper_xgboost.Rd | 7 tests/testthat/dev.R | 1205 +++++++++++++++++++++++++++++++++- vignettes |only 31 files changed, 2692 insertions(+), 648 deletions(-)
Title: Extracts Environmental Data from 'ERDDAP™' Web Services
Description: Contains three functions that access
environmental data from any 'ERDDAP™' data web service. The rxtracto() function extracts
data along a trajectory for a given "radius" around the point. The
rxtracto_3D() function extracts data in a box. The rxtractogon() function
extracts data in a polygon. All of those three function use the 'rerddap' package
to extract the data, and should work with any 'ERDDAP™' server.
There are also two functions, plotBBox() and plotTrack() that use the 'plotdap'
package to simplify the creation of maps of the data.
Author: Roy Mendelssohn [aut, cre],
Marie Auger-Methe [ctb],
Sunny Bak-Hospital [ctb]
Maintainer: Roy Mendelssohn <roy.mendelssohn@noaa.gov>
Diff between rerddapXtracto versions 1.2.3 dated 2025-04-26 and 1.2.4 dated 2026-01-21
rerddapXtracto-1.2.3/rerddapXtracto/R/getFIleCoords.R |only rerddapXtracto-1.2.4/rerddapXtracto/DESCRIPTION | 12 rerddapXtracto-1.2.4/rerddapXtracto/MD5 | 42 - rerddapXtracto-1.2.4/rerddapXtracto/NEWS.md | 12 rerddapXtracto-1.2.4/rerddapXtracto/R/checkBounds.R | 7 rerddapXtracto-1.2.4/rerddapXtracto/R/checkInput.R | 4 rerddapXtracto-1.2.4/rerddapXtracto/R/getFileCoords.R |only rerddapXtracto-1.2.4/rerddapXtracto/R/interp.R | 24 rerddapXtracto-1.2.4/rerddapXtracto/R/plotBBox.R | 1 rerddapXtracto-1.2.4/rerddapXtracto/R/remapCoords.R | 4 rerddapXtracto-1.2.4/rerddapXtracto/R/rxtracto.R | 407 +++++----- rerddapXtracto-1.2.4/rerddapXtracto/R/rxtracto_3D.R | 7 rerddapXtracto-1.2.4/rerddapXtracto/R/rxtractogon.R | 3 rerddapXtracto-1.2.4/rerddapXtracto/R/utils.R | 3 rerddapXtracto-1.2.4/rerddapXtracto/README.md | 2 rerddapXtracto-1.2.4/rerddapXtracto/build/vignette.rds |binary rerddapXtracto-1.2.4/rerddapXtracto/inst/doc/UsingrerddapXtracto.R | 43 - rerddapXtracto-1.2.4/rerddapXtracto/inst/doc/UsingrerddapXtracto.Rmd | 79 + rerddapXtracto-1.2.4/rerddapXtracto/inst/doc/UsingrerddapXtracto.html | 149 ++- rerddapXtracto-1.2.4/rerddapXtracto/man/rxtracto.Rd | 6 rerddapXtracto-1.2.4/rerddapXtracto/man/rxtracto_3D.Rd | 2 rerddapXtracto-1.2.4/rerddapXtracto/man/rxtractogon.Rd | 2 rerddapXtracto-1.2.4/rerddapXtracto/vignettes/UsingrerddapXtracto.Rmd | 79 + 23 files changed, 563 insertions(+), 325 deletions(-)
More information about rerddapXtracto at CRAN
Permanent link
Title: Calculating Bilateral and Multilateral Price Indexes
Description: Preparing a scanner data set for price dynamics calculations (data selecting, data classification, data matching, data filtering). Computing bilateral and multilateral indexes. For details on these methods see: Diewert and Fox (2020)
<doi:10.1080/07350015.2020.1816176>, Białek (2019) <doi:10.2478/jos-2019-0014> or Białek (2020) <doi:10.2478/jos-2020-0037>.
Author: Jacek Bialek [aut, cre]
Maintainer: Jacek Bialek <jacek.bialek@uni.lodz.pl>
Diff between PriceIndices versions 0.2.6 dated 2025-12-12 and 0.2.7 dated 2026-01-21
DESCRIPTION | 6 +- MD5 | 12 ++--- NEWS.md | 6 ++ R/dataRSM.R | 2 R/f_bilateral_indices.R | 100 +++++++++++++++++++++++++++++++++++------------- data/dataRSM.rda |binary man/dataRSM.Rd | 2 7 files changed, 91 insertions(+), 37 deletions(-)
Title: A Rainclouds Geom for 'ggplot2'
Description: The 'geom_rain()' function adds different geoms together using 'ggplot2' to create raincloud plots.
Author: Nicholas Judd [aut, cre] ,
Jordy van Langen [aut] ,
Micah Allen [ctb] ,
Rogier Kievit [aut]
Maintainer: Nicholas Judd <nickkjudd@gmail.com>
Diff between ggrain versions 0.1.0 dated 2025-11-24 and 0.1.1 dated 2026-01-21
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/geom-point-sorted.r | 2 +- R/stat-half-ydensity.R | 1 - build/vignette.rds |binary man/stat_half_ydensity.Rd | 3 --- 7 files changed, 14 insertions(+), 14 deletions(-)
Title: Flexible and Robust Agreement and Reliability Analyses
Description: Reliability and agreement analyses often have limited software support. Therefore, this package was created to make agreement and reliability analyses easier for the average researcher. The functions within this package include simple tests of agreement, agreement analysis for nested and replicate data, and provide robust analyses of reliability. In addition, this package contains a set of functions to help when planning studies looking to assess measurement agreement.
Author: Aaron Caldwell [aut, cre]
Maintainer: Aaron Caldwell <arcaldwell49@gmail.com>
Diff between SimplyAgree versions 0.2.1 dated 2025-02-24 and 0.3.0 dated 2026-01-21
DESCRIPTION | 10 MD5 | 131 +- NAMESPACE | 40 NEWS.md | 13 R/agree_coef.R | 4 R/agree_np.R | 8 R/agreement_limit.R | 8 R/dem_reg.R | 605 +++++++++--- R/deming_power.R |only R/globals.R | 11 R/jmvagree.h.R | 10 R/jmvagreemulti.h.R | 8 R/jmvdeming.b.R | 141 ++ R/jmvdeming.h.R | 6 R/loa_plot_functions.R | 6 R/methods.loa.R | 2 R/methods.loa_mermod.R | 2 R/methods.simple_agree.R | 10 R/methods.simple_eiv.R | 1333 +++++++++++++++++++++++++--- R/methods.simple_reli.R | 2 R/methods.tolerance_delta.R | 4 R/other_functions.R | 40 R/pb_reg.R |only R/power_agree_expected_half.R |only R/power_agreement_assurance.R |only R/power_exact_agreement.R |only R/quantile_funs.R | 4 R/reli_stats.R | 90 + R/simple_plot_functions.R | 178 ++- README.md | 182 ++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/Deming.R | 71 + inst/doc/Deming.Rmd | 209 +++- inst/doc/Deming.html | 480 ++++++++-- inst/doc/agree_tests.R | 44 inst/doc/agree_tests.Rmd | 37 inst/doc/agree_tests.html | 119 -- inst/doc/agreement_analysis.html | 18 inst/doc/power_sample_size_vignette.R |only inst/doc/power_sample_size_vignette.Rmd |only inst/doc/power_sample_size_vignette.html |only inst/doc/reanalysis.html | 9 inst/doc/reliability_analysis.html | 7 man/SimplyAgree-package.Rd | 2 man/agree_assurance.Rd |only man/agree_coef.Rd | 4 man/agree_expected_half.Rd |only man/dem_reg.Rd | 75 + man/deming_power.Rd |only man/deming_sample_size.Rd |only man/figures/logo.png |only man/jmvagree.Rd | 10 man/jmvagreemulti.Rd | 8 man/jmvdeming.Rd | 6 man/joint_test.Rd |only man/loa-methods.Rd | 2 man/loa_mermod-methods.Rd | 2 man/pb_reg.Rd |only man/power_agreement_exact.Rd |only man/simple_agree-methods.Rd | 4 man/simple_eiv-methods.Rd | 117 ++ man/simple_reli-methods.Rd | 2 man/tolerance_delta-methods.Rd | 2 tests/testthat/test-agree_nest.R | 54 - tests/testthat/test-agree_reps.R | 32 tests/testthat/test-dem_reg.R | 400 ++++++++ tests/testthat/test-deming_power.R |only tests/testthat/test-pb_reg.R |only tests/testthat/test-reli_stats.R | 1 tests/testthat/test-simple_eiv_methods.R |only tests/testthat/test_agree_power_functions.R |only tests/testthat/test_agree_test.R | 26 vignettes/Deming.Rmd | 209 +++- vignettes/agree_tests.Rmd | 37 vignettes/power_sample_size_vignette.Rmd |only vignettes/refs.bib | 99 ++ 77 files changed, 3932 insertions(+), 1002 deletions(-)
Title: Estimating Hierarchical Linear Models for Single-Case Designs
Description: Provides a set of tools for estimating hierarchical linear
models and effect sizes based on data from single-case designs.
Functions are provided for calculating standardized mean difference effect sizes that
are directly comparable to standardized mean differences estimated from between-subjects randomized experiments,
as described in Hedges, Pustejovsky, and Shadish (2012) <DOI:10.1002/jrsm.1052>;
Hedges, Pustejovsky, and Shadish (2013) <DOI:10.1002/jrsm.1086>;
Pustejovsky, Hedges, and Shadish (2014) <DOI:10.3102/1076998614547577>;
and Chen, Pustejovsky, Klingbeil, and Van Norman (2023) <DOI:10.1016/j.jsp.2023.02.002>.
Includes an interactive web interface.
Author: James Pustejovsky [aut, cre],
Man Chen [aut],
Bethany Hamilton [aut]
Maintainer: James Pustejovsky <jepusto@gmail.com>
Diff between scdhlm versions 0.7.3 dated 2024-02-25 and 0.7.4 dated 2026-01-21
scdhlm-0.7.3/scdhlm/tests/testthat/Rplots.pdf |only scdhlm-0.7.4/scdhlm/DESCRIPTION | 11 +-- scdhlm-0.7.4/scdhlm/MD5 | 13 +--- scdhlm-0.7.4/scdhlm/NEWS.md | 4 + scdhlm-0.7.4/scdhlm/build/partial.rdb |binary scdhlm-0.7.4/scdhlm/build/vignette.rds |binary scdhlm-0.7.4/scdhlm/inst/doc/Estimating-effect-sizes.R | 2 scdhlm-0.7.4/scdhlm/inst/doc/Estimating-effect-sizes.html | 43 +++++++------- 8 files changed, 39 insertions(+), 34 deletions(-)
Title: 'fxl' Single Case Design Charting Package
Description: The 'fxl' Charting package is used to prepare and design single case design figures that are typically prepared in spreadsheet software. With 'fxl', there is no need to leave the R environment to prepare these works and many of the more unique conventions in single case experimental designs can be performed without the need for physically constructing features of plots (e.g., drawing annotations across plots). Support is provided for various different plotting arrangements (e.g., multiple baseline), annotations (e.g., brackets, arrows), and output formats (e.g., svg, rasters).
Author: Shawn Gilroy [aut, cre, cph]
Maintainer: Shawn Gilroy <sgilroy1@lsu.edu>
Diff between fxl versions 1.7.2 dated 2024-12-20 and 1.7.3 dated 2026-01-21
COPYING | 1352 DESCRIPTION | 12 MD5 | 324 NAMESPACE | 146 R/data.R | 406 R/element-anno-arrows-draw.R | 106 R/element-anno-arrows.R | 122 R/element-anno-brackets-draw.R | 128 R/element-anno-brackets.R | 116 R/element-anno-guide-line-draw.R | 176 R/element-anno-guide-line.R | 86 R/element-anno-rect-draw.R | 82 R/element-anno-rect.R | 72 R/element-axis-x.R | 186 R/element-axis-y.R | 142 R/element-criterion-draw.R | 174 R/element-criterion-line.R | 74 R/element-label-facet-draw.R | 114 R/element-label-facet.R | 110 R/element-label-phase-draw.R | 288 R/element-label-phase.R | 124 R/element-label-title.R | 80 R/element-label-xlabel.R | 98 R/element-label-ylabel.R | 98 R/element-legend-draw.R | 104 R/element-legend.R | 132 R/element-line-cumsum-line-draw.R | 116 R/element-line-cumsum-line.R | 84 R/element-line-draw.R | 140 R/element-line.R | 78 R/element-phasechange-draw.R | 214 R/element-phasechange-multiple.R | 54 R/element-phasechange-single.R | 74 R/element-point-cumsum-point-draw.R | 168 R/element-point-cumsum-point.R | 90 R/element-point-draw.R | 242 R/element-point.R | 112 R/element-support-bar-draw.R | 280 R/element-support-bar.R | 148 R/fxl-debugging.R | 488 R/fxl-map.R | 28 R/fxl-print-semilog.R | 1054 R/fxl-print.R | 1136 R/fxl-save.R | 116 R/fxl-utilities.R | 198 R/fxl.R | 392 README.md | 462 build/vignette.rds |binary demo/00Index | 46 demo/annotatedplot.R | 814 demo/atd_concurrentoperant.R | 320 demo/beezdemandInd.R | 158 demo/challenge_1.R | 602 demo/challenge_2.R | 680 demo/challenge_3.R | 644 demo/challenge_4.R | 1150 demo/changing_criterion.R | 386 demo/cigarettepolicy.R | 388 demo/concurrentplot.R | 498 demo/cumulativeplot.R | 570 demo/faplot.R | 210 demo/faplotintegrity.R | 414 demo/greyed_training.R | 632 demo/multiplebaselineplot.R | 302 demo/reports_academic.R | 386 demo/reports_academic_celeration_classes.R | 564 demo/reports_academic_celeration_classes_local_norms.R | 616 demo/reports_academic_rti.R | 536 demo/run_all_demos.R | 44 demo/run_coverage.R | 56 demo/semilogplot.R | 394 demo/silvermanplot.R | 338 inst/CITATION | 24 inst/doc/fxl.R | 4292 +-- inst/doc/fxl.Rmd | 5092 +-- inst/doc/fxl.html | 4206 +- man/Challenge1Data.Rd | 58 man/Challenge2Data.Rd | 46 man/Challenge4Data.Rd | 58 man/GelinoEtAl2022.Rd | 60 man/Gilroyetal2015.Rd | 54 man/Gilroyetal2019.Rd | 60 man/Gilroyetal2019Tx.Rd | 58 man/Gilroyetal2021.Rd | 56 man/KoffarnusEtAl2011.Rd | 48 man/LozyEtAl2020.Rd | 52 man/SimulatedAcademicFluency.Rd | 50 man/assert_input_type.Rd | 42 man/cnvrt_coords.Rd | 54 man/draw_arrows.Rd | 48 man/draw_bar_support.Rd | 52 man/draw_brackets.Rd | 48 man/draw_cumsum_lines.Rd | 48 man/draw_cumsum_points.Rd | 48 man/draw_guide_line.Rd | 48 man/draw_label_facet.Rd | 48 man/draw_label_phase.Rd | 48 man/draw_legend.Rd | 40 man/draw_lines.Rd | 48 man/draw_points.Rd | 52 man/draw_rect.Rd | 52 man/draw_scr_criterion.Rd | 48 man/draw_scr_plines.Rd | 48 man/figures/dragon-cairo.ps.xml | 8504 ++--- man/figures/like-cairo-mod.ps.xml | 614 man/figures/scorpion-cairo.ps.xml |12826 ++++----- man/figures/skinner-cairo.ps.xml |24178 ++++++++--------- man/figures/star-cairo-mod.ps.xml | 1138 man/isValidAXSCharacter.Rd | 38 man/isValidAestheticMapping.Rd | 38 man/isValidCharacterVector.Rd | 42 man/isValidDataFrame.Rd | 38 man/isValidLogicalVector.Rd | 42 man/isValidNumericVector.Rd | 42 man/print.fxl.Rd | 46 man/print.fxlsemilog.Rd | 46 man/scr_anno_arrows.Rd | 98 man/scr_anno_brackets.Rd | 92 man/scr_anno_guide_line.Rd | 74 man/scr_anno_rect.Rd | 52 man/scr_bar_support.Rd | 104 man/scr_criterion_lines.Rd | 68 man/scr_cumsum_lines.Rd | 56 man/scr_cumsum_points.Rd | 74 man/scr_label_facet.Rd | 86 man/scr_label_phase.Rd | 92 man/scr_legend.Rd | 140 man/scr_lines.Rd | 56 man/scr_plines.Rd | 56 man/scr_plines_mbd.Rd | 48 man/scr_plot.Rd | 140 man/scr_points.Rd | 86 man/scr_save.Rd | 80 man/scr_title.Rd | 60 man/scr_xlabel.Rd | 80 man/scr_xoverride.Rd | 98 man/scr_ylabel.Rd | 80 man/scr_yoverride.Rd | 80 man/var_map.Rd | 34 tests/testthat.R | 10 tests/testthat/Rplots.pdf |binary tests/testthat/test-demo-annotatedplot.R | 742 tests/testthat/test-demo-changingcriterion.R | 626 tests/testthat/test-demo-cigarettepolicy.R | 382 tests/testthat/test-demo-concurrentplot.R | 516 tests/testthat/test-demo-cumulativeplot.R | 536 tests/testthat/test-demo-cumulativeplot_single.R | 192 tests/testthat/test-demo-faplot.R | 156 tests/testthat/test-demo-faplotintegrity.R | 208 tests/testthat/test-demo-faplotintegrity_extra.R | 380 tests/testthat/test-demo-multiplebaseline_greyed.R | 1008 tests/testthat/test-demo-multiplebaselineplot.R | 256 tests/testthat/test-demo-semilogplot.R | 368 tests/testthat/test-demo-semilogplot_multi.R | 528 tests/testthat/test-demo-silvermanplot.R | 302 tests/testthat/test-element-bar.R | 390 tests/testthat/test-element-label-facet.R | 190 tests/testthat/test-element-label-phase.R | 190 tests/testthat/test-element-scr_arrows.R | 462 tests/testthat/test-element-scr_xoverride.R | 1252 tests/testthat/test-element-scr_yoverride.R | 640 tests/testthat/test-fxl.R | 800 vignettes/fxl.Rmd | 5092 +-- 163 files changed, 50463 insertions(+), 50449 deletions(-)
Title: Incorporate Expert Opinion with Parametric Survival Models
Description: Enables users to incorporate expert opinion with parametric survival analysis using a Bayesian or frequentist approach. Expert Opinion can be provided on the survival probabilities at certain time-point(s) or for the difference in mean survival between two treatment arms. Please reference it's use as Cooney, P., White, A. (2023) <doi:10.1177/0272989X221150212>.
Author: Philip Cooney [aut, cre] ,
Arthur White [ths]
Maintainer: Philip Cooney <phcooney@tcd.ie>
Diff between expertsurv versions 1.4.0 dated 2025-02-20 and 1.4.1 dated 2026-01-21
expertsurv-1.4.0/expertsurv/inst/REFERENCES.bib.sav.tmp |only expertsurv-1.4.1/expertsurv/DESCRIPTION | 13 +++++++------ expertsurv-1.4.1/expertsurv/MD5 | 9 ++++----- expertsurv-1.4.1/expertsurv/R/predict.flexsurvreg.R | 2 +- expertsurv-1.4.1/expertsurv/build/partial.rdb |binary expertsurv-1.4.1/expertsurv/inst/NEWS.txt | 11 +++++++++++ 6 files changed, 23 insertions(+), 12 deletions(-)
Title: 'Mangal' Client
Description: An interface to the 'Mangal' database - a collection of ecological networks. This package includes functions to work with the 'Mangal RESTful API' methods (<https://mangal-interactions.github.io/mangal-api/>).
Author: Steve Vissault [aut, ctb] ,
Kevin Cazelles [aut, cre] ,
Gabriel Bergeron [aut, ctb],
Benjamin Mercier [aut, ctb],
Clement Violet [aut, ctb],
Dominique Gravel [aut],
Timothee Poisot [aut],
Thomas Lin Pedersen [rev] ,
Anna Willoughby [rev]
Maintainer: Kevin Cazelles <kevin.cazelles@insileco.io>
This is a re-admission after prior archival of version 2.1.3 dated 2023-03-30
Diff between rmangal versions 2.1.3 dated 2023-03-30 and 2.2.2 dated 2026-01-21
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Title: PWIGLS for Two-Level Multivariate and Multilevel Linear Models
Description: Estimates two-level multilevel linear model and two-level multivariate linear multilevel model with weights following Probability Weighted Iterative Generalised Least Squares approach. For details see Veiga et al.(2014) <doi:10.1111/rssc.12020>.
Author: Alinne Veiga [aut, cre] ,
Joao Messa [aut, trl, com]
Maintainer: Alinne Veiga <alinne.veiga@ibge.gov.br>
Diff between pwlmm versions 1.1.1 dated 2022-06-13 and 1.1.2 dated 2026-01-21
DESCRIPTION | 17 - MD5 | 24 - NAMESPACE | 3 R/RcppExports.R | 24 - R/pwigls2.R | 6 build/vignette.rds |binary demo/Eg_pwigls2.R | 27 -- demo/Eg_wmlmm.R | 37 +- inst/doc/pwlmm.R | 2 inst/doc/pwlmm.Rmd | 19 + inst/doc/pwlmm.html | 682 ++++++++++++++++++++++++++++++++++++++++++---------- tests |only vignettes/pwlmm.Rmd | 19 + 13 files changed, 668 insertions(+), 192 deletions(-)
Title: Estimating Genome-Wide Significance for Whole Genome Sequencing
Studies, Either Single SNP Tests or Region-Based Tests
Description: The correlations and linkage disequilibrium between tests can vary as a function of minor allele frequency thresholds used to filter variants, and also varies with different choices of test statistic for region-based tests. Appropriate genome-wide significance thresholds can be estimated empirically through permutation on only a small proportion of the whole genome.
Author: Changjiang Xu [aut, cre],
Celia M.T. Greenwood [ctb]
Maintainer: Changjiang Xu <changjiang.h.xu@gmail.com>
Diff between GWsignif versions 1.2 dated 2016-09-12 and 1.2.1 dated 2026-01-21
DESCRIPTION | 15 +++++++++------ MD5 | 6 +++--- man/GWsignif-package.Rd | 2 +- man/GWsignif.Rd | 12 ++---------- 4 files changed, 15 insertions(+), 20 deletions(-)
Title: Workflow for Cluster Randomised Trials with Spillover
Description: Design, workflow and statistical analysis of Cluster Randomised Trials of (health) interventions where there may be spillover between the arms (see <https://thomasasmith.github.io/index.html>).
Author: Thomas Smith [aut, cre, cph] ,
Lea Multerer [ctb],
Mariah Silkey [ctb]
Maintainer: Thomas Smith <Thomas-a.Smith@unibas.ch>
Diff between CRTspat versions 1.3.2 dated 2025-01-27 and 1.4.0 dated 2026-01-21
CRTspat-1.3.2/CRTspat/man/figures |only CRTspat-1.3.2/CRTspat/vignettes/example6b.r-2.png |only CRTspat-1.4.0/CRTspat/DESCRIPTION | 15 CRTspat-1.4.0/CRTspat/LICENSE | 4 CRTspat-1.4.0/CRTspat/MD5 | 156 +- CRTspat-1.4.0/CRTspat/NAMESPACE | 118 +- CRTspat-1.4.0/CRTspat/NEWS.md | 53 - CRTspat-1.4.0/CRTspat/R/CRTanalysis_methods.R |only CRTspat-1.4.0/CRTspat/R/CRTsp.R | 682 ++++++------- CRTspat-1.4.0/CRTspat/R/CRTspat-package.R | 40 CRTspat-1.4.0/CRTspat/R/analyseCRT.R | 1095 ++++++--------------- CRTspat-1.4.0/CRTspat/R/designCRT.R | 4 CRTspat-1.4.0/CRTspat/R/plotCRT.R | 71 - CRTspat-1.4.0/CRTspat/R/simulateCRT.R | 7 CRTspat-1.4.0/CRTspat/R/stananalysis.R |only CRTspat-1.4.0/CRTspat/R/surround.R | 13 CRTspat-1.4.0/CRTspat/R/utils.R | 10 CRTspat-1.4.0/CRTspat/README.md | 97 - CRTspat-1.4.0/CRTspat/build/vignette.rds |binary CRTspat-1.4.0/CRTspat/inst/doc/Usecase1.Rmd | 25 CRTspat-1.4.0/CRTspat/inst/doc/Usecase1.html | 30 CRTspat-1.4.0/CRTspat/inst/doc/Usecase10.Rmd |only CRTspat-1.4.0/CRTspat/inst/doc/Usecase10.html |only CRTspat-1.4.0/CRTspat/inst/doc/Usecase2.Rmd | 109 -- CRTspat-1.4.0/CRTspat/inst/doc/Usecase2.html | 88 - CRTspat-1.4.0/CRTspat/inst/doc/Usecase3.Rmd | 4 CRTspat-1.4.0/CRTspat/inst/doc/Usecase3.html | 11 CRTspat-1.4.0/CRTspat/inst/doc/Usecase4.Rmd | 97 - CRTspat-1.4.0/CRTspat/inst/doc/Usecase4.html | 213 +--- CRTspat-1.4.0/CRTspat/inst/doc/Usecase5.Rmd | 262 ++--- CRTspat-1.4.0/CRTspat/inst/doc/Usecase5.html | 309 +++-- CRTspat-1.4.0/CRTspat/inst/doc/Usecase6.Rmd | 64 - CRTspat-1.4.0/CRTspat/inst/doc/Usecase6.html | 60 - CRTspat-1.4.0/CRTspat/inst/doc/Usecase7.Rmd | 3 CRTspat-1.4.0/CRTspat/inst/doc/Usecase7.html | 7 CRTspat-1.4.0/CRTspat/inst/doc/Usecase8.html | 5 CRTspat-1.4.0/CRTspat/man/CRTanalysis.Rd | 308 +++-- CRTspat-1.4.0/CRTspat/man/CRTpower.Rd | 2 CRTspat-1.4.0/CRTspat/man/CRTsp.Rd | 140 +- CRTspat-1.4.0/CRTspat/man/CRTspat-package.Rd | 42 CRTspat-1.4.0/CRTspat/man/aggregateCRT.Rd | 64 - CRTspat-1.4.0/CRTspat/man/coef.CRTanalysis.Rd | 2 CRTspat-1.4.0/CRTspat/man/compute_mesh.Rd | 4 CRTspat-1.4.0/CRTspat/man/fitted.CRTanalysis.Rd | 2 CRTspat-1.4.0/CRTspat/man/latlong_as_xy.Rd | 74 - CRTspat-1.4.0/CRTspat/man/plotCRT.Rd | 264 ++--- CRTspat-1.4.0/CRTspat/man/predict.CRTanalysis.Rd | 2 CRTspat-1.4.0/CRTspat/man/randomizeCRT.Rd | 104 - CRTspat-1.4.0/CRTspat/man/readdata.Rd | 50 CRTspat-1.4.0/CRTspat/man/residuals.CRTanalysis.Rd | 2 CRTspat-1.4.0/CRTspat/man/simulateCRT.Rd | 291 ++--- CRTspat-1.4.0/CRTspat/man/specify_buffer.Rd | 80 - CRTspat-1.4.0/CRTspat/man/specify_clusters.Rd | 140 +- CRTspat-1.4.0/CRTspat/man/summary.CRTanalysis.Rd | 50 CRTspat-1.4.0/CRTspat/tests/testthat.R | 8 CRTspat-1.4.0/CRTspat/tests/testthat/test3.R | 28 CRTspat-1.4.0/CRTspat/tests/testthat/test4_8..R | 98 - CRTspat-1.4.0/CRTspat/tests/testthat/test9.R | 9 CRTspat-1.4.0/CRTspat/tests/testthat/tests1_2.R | 76 - CRTspat-1.4.0/CRTspat/vignettes/Usecase1.Rmd | 25 CRTspat-1.4.0/CRTspat/vignettes/Usecase10.Rmd |only CRTspat-1.4.0/CRTspat/vignettes/Usecase10.Rmd.orig |only CRTspat-1.4.0/CRTspat/vignettes/Usecase11.Rmd.orig | 90 - CRTspat-1.4.0/CRTspat/vignettes/Usecase2.Rmd | 109 -- CRTspat-1.4.0/CRTspat/vignettes/Usecase2.Rmd.orig | 236 ++-- CRTspat-1.4.0/CRTspat/vignettes/Usecase3.Rmd | 4 CRTspat-1.4.0/CRTspat/vignettes/Usecase3.Rmd.orig | 2 CRTspat-1.4.0/CRTspat/vignettes/Usecase4.Rmd | 97 - CRTspat-1.4.0/CRTspat/vignettes/Usecase4.Rmd.orig | 29 CRTspat-1.4.0/CRTspat/vignettes/Usecase5.Rmd | 262 ++--- CRTspat-1.4.0/CRTspat/vignettes/Usecase5.Rmd.orig | 36 CRTspat-1.4.0/CRTspat/vignettes/Usecase6.Rmd | 64 - CRTspat-1.4.0/CRTspat/vignettes/Usecase7.Rmd | 3 CRTspat-1.4.0/CRTspat/vignettes/Usecase7.Rmd.orig | 3 CRTspat-1.4.0/CRTspat/vignettes/Usecase8.Rmd.orig | 326 +++--- CRTspat-1.4.0/CRTspat/vignettes/Usecase9.Rmd.orig | 76 - CRTspat-1.4.0/CRTspat/vignettes/example10e.r-1.png |only CRTspat-1.4.0/CRTspat/vignettes/example10f.r-1.png |only CRTspat-1.4.0/CRTspat/vignettes/example2a.r-2.png |binary CRTspat-1.4.0/CRTspat/vignettes/example3b.r-1.png |binary CRTspat-1.4.0/CRTspat/vignettes/example5b.r-1.png |binary CRTspat-1.4.0/CRTspat/vignettes/example5d.r-1.png |binary CRTspat-1.4.0/CRTspat/vignettes/example6e.r-1.png |binary CRTspat-1.4.0/CRTspat/vignettes/runVignette.R | 2 84 files changed, 3150 insertions(+), 3706 deletions(-)
Title: Stochastic Frontier Analysis
Description: Provides a user-friendly framework for estimating a wide variety of cross-sectional and panel stochastic frontier models. Suitable for a broad range of applications, the implementation offers extensive flexibility in specification and estimation techniques.
Author: David Bernstein [aut, cre] ,
Christopher Parmeter [aut],
Alexander Stead [aut]
Maintainer: David Bernstein <davebernstein1@gmail.com>
This is a re-admission after prior archival of version 1.0-1 dated 2014-01-06
Diff between sfa versions 1.0-1 dated 2014-01-06 and 1.0.4 dated 2026-01-21
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Title: Penalized Linear Mixed Models for Correlated Data
Description: Fits penalized linear mixed models that correct for
unobserved confounding factors. 'plmmr' infers and corrects for the
presence of unobserved confounding effects such as population
stratification and environmental heterogeneity. It then fits a linear
model via penalized maximum likelihood. Originally designed for the
multivariate analysis of single nucleotide polymorphisms (SNPs)
measured in a genome-wide association study (GWAS), 'plmmr' eliminates
the need for subpopulation-specific analyses and post-analysis p-value
adjustments. Functions for the appropriate processing of 'PLINK'
files are also supplied. For examples, see the package homepage.
<https://pbreheny.github.io/plmmr/>.
Author: Tabitha K. Peter [aut] ,
Anna C. Reisetter [aut] ,
Yujing Lu [aut],
Oscar A. Rysavy [aut],
Patrick J. Breheny [aut, cre]
Maintainer: Patrick J. Breheny <patrick-breheny@uiowa.edu>
Diff between plmmr versions 4.2.1 dated 2025-03-03 and 4.2.2 dated 2026-01-21
plmmr-4.2.1/plmmr/R/check_for_file_extension.R |only plmmr-4.2.1/plmmr/man/check_for_file_extension.Rd |only plmmr-4.2.2/plmmr/DESCRIPTION | 30 +-- plmmr-4.2.2/plmmr/MD5 | 155 ++++++++-------- plmmr-4.2.2/plmmr/NEWS.md | 5 plmmr-4.2.2/plmmr/R/add_predictors.R | 25 +- plmmr-4.2.2/plmmr/R/align_ids.R | 22 +- plmmr-4.2.2/plmmr/R/big_cbind.R | 17 - plmmr-4.2.2/plmmr/R/coef-cv-plmm.R | 8 plmmr-4.2.2/plmmr/R/coef-plmm.R | 22 -- plmmr-4.2.2/plmmr/R/construct_variance.R | 27 +- plmmr-4.2.2/plmmr/R/count_constant_features.R | 8 plmmr-4.2.2/plmmr/R/count_cores.R | 6 plmmr-4.2.2/plmmr/R/create_design.R | 18 - plmmr-4.2.2/plmmr/R/create_design_filebacked.R | 114 +++++------- plmmr-4.2.2/plmmr/R/create_design_in_memory.R | 24 +- plmmr-4.2.2/plmmr/R/create_log.R | 5 plmmr-4.2.2/plmmr/R/cv-plmm.R | 203 ++++++++++------------ plmmr-4.2.2/plmmr/R/cvf.R | 109 ++++++----- plmmr-4.2.2/plmmr/R/data.R | 2 plmmr-4.2.2/plmmr/R/eigen_K.R | 21 +- plmmr-4.2.2/plmmr/R/estimate_eta.R | 4 plmmr-4.2.2/plmmr/R/fbm2bm.R | 4 plmmr-4.2.2/plmmr/R/find_example_data.R | 6 plmmr-4.2.2/plmmr/R/get_data.R | 14 - plmmr-4.2.2/plmmr/R/get_hostname.R | 2 plmmr-4.2.2/plmmr/R/impute_snp_data.R | 13 - plmmr-4.2.2/plmmr/R/index_samples.R | 18 - plmmr-4.2.2/plmmr/R/lam_names.R | 4 plmmr-4.2.2/plmmr/R/log_lik.R | 16 - plmmr-4.2.2/plmmr/R/name_and_count_bigsnp.R | 10 - plmmr-4.2.2/plmmr/R/penalties.R | 9 plmmr-4.2.2/plmmr/R/plmm.R | 54 ++--- plmmr-4.2.2/plmmr/R/plmm_checks.R | 75 ++++---- plmmr-4.2.2/plmmr/R/plmm_fit.R | 86 ++++----- plmmr-4.2.2/plmmr/R/plmm_format.R | 4 plmmr-4.2.2/plmmr/R/plmm_prep.R | 44 ++-- plmmr-4.2.2/plmmr/R/plot-cv-plmm.R | 67 +++---- plmmr-4.2.2/plmmr/R/plot-plmm.R | 36 ++- plmmr-4.2.2/plmmr/R/predict-plmm.R | 41 ++-- plmmr-4.2.2/plmmr/R/predict_within_cv.R | 10 - plmmr-4.2.2/plmmr/R/pretty_time.R | 4 plmmr-4.2.2/plmmr/R/print-summary-cv-plmm.R | 17 + plmmr-4.2.2/plmmr/R/print-summary-plmm.R | 16 - plmmr-4.2.2/plmmr/R/process_delim.R | 39 ++-- plmmr-4.2.2/plmmr/R/process_plink.R | 97 +++++----- plmmr-4.2.2/plmmr/R/read_data_files.R | 22 +- plmmr-4.2.2/plmmr/R/read_plink_files.R | 16 - plmmr-4.2.2/plmmr/R/relatedness_mat.R | 31 +-- plmmr-4.2.2/plmmr/R/rotate_filebacked.R | 9 plmmr-4.2.2/plmmr/R/setup_lambda.R | 34 +-- plmmr-4.2.2/plmmr/R/standardize_filebacked.R | 17 + plmmr-4.2.2/plmmr/R/standardize_matrix.R | 46 ++-- plmmr-4.2.2/plmmr/R/subset_bigsnp.R | 6 plmmr-4.2.2/plmmr/R/summary-cv-plmm.R | 18 - plmmr-4.2.2/plmmr/R/summary-plmm.R | 36 +-- plmmr-4.2.2/plmmr/R/untransform.R | 6 plmmr-4.2.2/plmmr/R/untransform_delim.R | 22 -- plmmr-4.2.2/plmmr/R/untransform_in_memory.R | 29 +-- plmmr-4.2.2/plmmr/R/untransform_plink.R | 24 +- plmmr-4.2.2/plmmr/README.md | 20 -- plmmr-4.2.2/plmmr/build/partial.rdb |binary plmmr-4.2.2/plmmr/build/vignette.rds |binary plmmr-4.2.2/plmmr/inst/doc/getting-started.html | 15 - plmmr-4.2.2/plmmr/inst/extdata/penncath_lite.bed |only plmmr-4.2.2/plmmr/man/coef.cv_plmm.Rd | 6 plmmr-4.2.2/plmmr/man/coef.plmm.Rd | 2 plmmr-4.2.2/plmmr/man/create_design_filebacked.Rd | 14 - plmmr-4.2.2/plmmr/man/cv_plmm.Rd | 41 ++-- plmmr-4.2.2/plmmr/man/plmm.Rd | 12 - plmmr-4.2.2/plmmr/man/plmm_fit.Rd | 5 plmmr-4.2.2/plmmr/man/plmmr-package.Rd | 4 plmmr-4.2.2/plmmr/man/predict.plmm.Rd | 2 plmmr-4.2.2/plmmr/man/process_delim.Rd | 2 plmmr-4.2.2/plmmr/man/process_plink.Rd | 16 - plmmr-4.2.2/plmmr/man/rotate_filebacked.Rd | 2 plmmr-4.2.2/plmmr/man/standardize_filebacked.Rd | 3 plmmr-4.2.2/plmmr/man/standardize_in_memory.Rd | 2 plmmr-4.2.2/plmmr/src/big_standardize.cpp | 18 + plmmr-4.2.2/plmmr/src/standardize.cpp | 12 - 80 files changed, 1011 insertions(+), 992 deletions(-)
Title: An Implementation of Z-Curves
Description: An implementation of z-curves - a method for estimating expected discovery
and replicability rates on the bases of test-statistics of published studies. The package
provides functions for fitting the density, EM, and censored EM version (Bartoš & Schimmack, 2022,
<doi:10.15626/MP.2021.2720>; Schimmack & Bartoš, 2023, <doi: 10.1371/journal.pone.0290084>),
as well as the original density z-curve (Brunner & Schimmack, 2020, <doi:10.15626/MP.2018.874>).
Furthermore, the package provides summarizing and plotting functions for the fitted z-curve objects.
See the aforementioned articles for more information about the z-curves, expected discovery
and replicability rates, validation studies, and limitations.
Author: Frantisek Bartos [aut, cre],
Ulrich Schimmack [aut]
Maintainer: Frantisek Bartos <f.bartos96@gmail.com>
Diff between zcurve versions 2.4.5 dated 2025-09-05 and 2.4.6 dated 2026-01-21
DESCRIPTION | 8 - MD5 | 32 ++--- R/RcppExports.R | 16 +- R/main.R | 7 + R/zcurve_EM.R | 10 + R/zcurve_clustered.R | 1 build/partial.rdb |binary man/control_EM.Rd | 3 src/RcppExports.cpp | 36 +++-- src/zcurveEM.cpp | 29 +++- tests/testthat/_snaps/zcurve/z-curve-cens-em-ggplot.svg | 56 ++++---- tests/testthat/_snaps/zcurve/z-curve-clustered-mixed-ggplot-1.svg | 64 +++++----- tests/testthat/_snaps/zcurve/z-curve-clustered-mixed-ggplot-2.svg | 64 +++++----- tests/testthat/_snaps/zcurve/z-curve-em-ggplot.svg | 60 ++++----- tests/testthat/_snaps/zcurve/z-curve-kd2-ggplot.svg | 60 ++++----- tests/testthat/_snaps/zcurve/z-curve-mixed-em-ggplot.svg | 56 ++++---- tests/testthat/test-zcurve.R | 8 - 17 files changed, 274 insertions(+), 236 deletions(-)
Title: Particle Learning of Gaussian Processes
Description: Sequential Monte Carlo (SMC) inference for fully Bayesian
Gaussian process (GP) regression and classification models by
particle learning (PL) following Gramacy & Polson (2011) <doi:10.48550/arXiv.0909.5262>.
The sequential nature of inference
and the active learning (AL) hooks provided facilitate thrifty
sequential design (by entropy) and optimization
(by improvement) for classification and
regression models, respectively.
This package essentially provides a generic
PL interface, and functions (arguments to the interface) which
implement the GP models and AL heuristics. Functions for
a special, linked, regression/classification GP model and
an integrated expected conditional improvement (IECI) statistic
provide for optimization in the presence of unknown constraints.
Separable and isotropic Gaussian, and single-index correlation
functions are supported.
See the examples section of ?plgp and demo(package="plgp")
for an index of demos.
Author: Robert B. Gramacy [aut, cre]
Maintainer: Robert B. Gramacy <rbg@vt.edu>
Diff between plgp versions 1.1-12 dated 2022-10-19 and 1.1-13 dated 2026-01-21
ChangeLog | 9 ++++++++- DESCRIPTION | 18 +++++++++++------- MD5 | 8 ++++---- src/matrix.c | 10 +++++----- src/rhelp.h | 2 +- 5 files changed, 29 insertions(+), 18 deletions(-)
Title: Extensible Data Structures for Multivariate Analysis
Description: Provides a set of basic and extensible data structures and functions for multivariate analysis, including dimensionality reduction techniques, projection methods, and preprocessing functions. The aim of this package is to offer a flexible and user-friendly framework for multivariate analysis that can be easily extended for custom requirements and specific data analysis tasks.
Author: Bradley Buchsbaum [aut, cre]
Maintainer: Bradley Buchsbaum <brad.buchsbaum@gmail.com>
Diff between multivarious versions 0.2.0 dated 2024-03-28 and 0.3.0 dated 2026-01-21
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multivarious-0.3.0/multivarious/R/bi_projector.R | 119 + multivarious-0.3.0/multivarious/R/bi_projector_union.R | 6 multivarious-0.3.0/multivarious/R/bootstrap.R |only multivarious-0.3.0/multivarious/R/cPCA.R |only multivarious-0.3.0/multivarious/R/classifier.R | 1093 ++++++++-- multivarious-0.3.0/multivarious/R/composed_projector.R | 620 ++++- multivarious-0.3.0/multivarious/R/cv.R |only multivarious-0.3.0/multivarious/R/discriminant_projector.R | 441 +++- multivarious-0.3.0/multivarious/R/geneig.R | 815 ++++++- multivarious-0.3.0/multivarious/R/multiblock.R | 460 +++- multivarious-0.3.0/multivarious/R/nystrom_embedding.R | 553 ++++- multivarious-0.3.0/multivarious/R/pca.R | 909 +++++++- multivarious-0.3.0/multivarious/R/plsc.R |only multivarious-0.3.0/multivarious/R/plsc_inference.R |only multivarious-0.3.0/multivarious/R/pre_process.R | 615 ++++- multivarious-0.3.0/multivarious/R/preproc-generics.R |only multivarious-0.3.0/multivarious/R/preproc-utils.R |only multivarious-0.3.0/multivarious/R/projector.R | 403 ++- multivarious-0.3.0/multivarious/R/regress.R | 277 ++ multivarious-0.3.0/multivarious/R/svd.R | 112 - multivarious-0.3.0/multivarious/R/twoway_projector.R | 524 ++++ multivarious-0.3.0/multivarious/R/utils.R | 150 + multivarious-0.3.0/multivarious/README.md | 15 multivarious-0.3.0/multivarious/build/partial.rdb |only multivarious-0.3.0/multivarious/build/vignette.rds |binary multivarious-0.3.0/multivarious/inst/doc/CPCAplus.R |only multivarious-0.3.0/multivarious/inst/doc/CPCAplus.Rmd |only multivarious-0.3.0/multivarious/inst/doc/CPCAplus.html |only multivarious-0.3.0/multivarious/inst/doc/Classifier.R |only multivarious-0.3.0/multivarious/inst/doc/Classifier.Rmd |only multivarious-0.3.0/multivarious/inst/doc/Classifier.html |only multivarious-0.3.0/multivarious/inst/doc/Composing_Projectors.R |only multivarious-0.3.0/multivarious/inst/doc/Composing_Projectors.Rmd |only 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multivarious-0.3.0/multivarious/man/projector.Rd | 11 multivarious-0.3.0/multivarious/man/rank_score.Rd |only multivarious-0.3.0/multivarious/man/reconstruct.Rd | 19 multivarious-0.3.0/multivarious/man/reconstruct.composed_projector.Rd |only multivarious-0.3.0/multivarious/man/reconstruct.pca.Rd |only multivarious-0.3.0/multivarious/man/reconstruct.regress.Rd |only multivarious-0.3.0/multivarious/man/reconstruct_new.Rd |only multivarious-0.3.0/multivarious/man/regress.Rd | 20 multivarious-0.3.0/multivarious/man/reprocess.cross_projector.Rd | 4 multivarious-0.3.0/multivarious/man/reprocess.nystrom_approx.Rd |only multivarious-0.3.0/multivarious/man/rf_classifier.projector.Rd | 34 multivarious-0.3.0/multivarious/man/robust_inv_vTv.Rd |only multivarious-0.3.0/multivarious/man/rotate.Rd | 4 multivarious-0.3.0/multivarious/man/rotate.pca.Rd |only multivarious-0.3.0/multivarious/man/scores.plsc.Rd |only multivarious-0.3.0/multivarious/man/screeplot.Rd |only multivarious-0.3.0/multivarious/man/screeplot.pca.Rd |only multivarious-0.3.0/multivarious/man/std_scores.svd.Rd |only multivarious-0.3.0/multivarious/man/subspace_similarity.Rd |only multivarious-0.3.0/multivarious/man/summary.composed_projector.Rd |only multivarious-0.3.0/multivarious/man/svd_wrapper.Rd | 9 multivarious-0.3.0/multivarious/man/topk.Rd |only multivarious-0.3.0/multivarious/man/transfer.Rd |only multivarious-0.3.0/multivarious/man/transfer.cross_projector.Rd |only multivarious-0.3.0/multivarious/man/transform.Rd |only multivarious-0.3.0/multivarious/man/truncate.composed_projector.Rd |only multivarious-0.3.0/multivarious/man/variables_used.Rd |only multivarious-0.3.0/multivarious/man/vars_for_component.Rd |only multivarious-0.3.0/multivarious/tests/testthat/test-geneig-subspace.R |only multivarious-0.3.0/multivarious/tests/testthat/test_biprojector_union.R |only multivarious-0.3.0/multivarious/tests/testthat/test_bootstrap.R |only multivarious-0.3.0/multivarious/tests/testthat/test_classifier.R | 37 multivarious-0.3.0/multivarious/tests/testthat/test_cpca.R |only multivarious-0.3.0/multivarious/tests/testthat/test_cross_projector.R |only multivarious-0.3.0/multivarious/tests/testthat/test_cv.R |only multivarious-0.3.0/multivarious/tests/testthat/test_discriminant_projector.R |only multivarious-0.3.0/multivarious/tests/testthat/test_geneig.R |only multivarious-0.3.0/multivarious/tests/testthat/test_geneig_methods.R |only multivarious-0.3.0/multivarious/tests/testthat/test_nystrom.R | 194 + multivarious-0.3.0/multivarious/tests/testthat/test_pca.R | 76 multivarious-0.3.0/multivarious/tests/testthat/test_plsc.R |only multivarious-0.3.0/multivarious/tests/testthat/test_preprocess.R | 196 + multivarious-0.3.0/multivarious/tests/testthat/test_projector.R | 99 multivarious-0.3.0/multivarious/tests/testthat/test_reconstruct_new_biprojector.R |only multivarious-0.3.0/multivarious/tests/testthat/test_regress.R | 11 multivarious-0.3.0/multivarious/vignettes/CPCAplus.Rmd |only multivarious-0.3.0/multivarious/vignettes/Classifier.Rmd |only multivarious-0.3.0/multivarious/vignettes/Composing_Projectors.Rmd |only multivarious-0.3.0/multivarious/vignettes/CrossValidation.Rmd |only multivarious-0.3.0/multivarious/vignettes/Extending.Rmd |only multivarious-0.3.0/multivarious/vignettes/Introduction.Rmd | 163 - multivarious-0.3.0/multivarious/vignettes/Multiblock.Rmd |only multivarious-0.3.0/multivarious/vignettes/Nystrom.Rmd |only multivarious-0.3.0/multivarious/vignettes/PLSC.Rmd |only multivarious-0.3.0/multivarious/vignettes/Partial_Projection.Rmd |only multivarious-0.3.0/multivarious/vignettes/PermutationTesting.Rmd |only multivarious-0.3.0/multivarious/vignettes/PreProcessing.Rmd |only multivarious-0.3.0/multivarious/vignettes/Regress.Rmd |only multivarious-0.3.0/multivarious/vignettes/SVD_PCA.Rmd |only multivarious-0.3.0/multivarious/vignettes/albers.css |only 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Title: GWR, Mixed GWR with Spatial Autocorrelation and Multiscale GWR
(Top-Down Scale Approaches)
Description: Provides methods for Geographically Weighted Regression with spatial autocorrelation (Geniaux and Martinetti 2017) <doi:10.1016/j.regsciurbeco.2017.04.001>. Implements Multiscale Geographically Weighted Regression with Top-Down Scale approaches (Geniaux 2026) <doi:10.1007/s10109-025-00481-4>.
Author: Ghislain Geniaux [aut, cre],
Davide Martinetti [aut],
Cesar Martinez [aut]
Maintainer: Ghislain Geniaux <ghislain.geniaux@inrae.fr>
Diff between mgwrsar versions 1.1 dated 2025-02-20 and 1.3.1 dated 2026-01-21
mgwrsar-1.1/mgwrsar/R/ApproxiWv.R |only mgwrsar-1.1/mgwrsar/R/SSR.R |only mgwrsar-1.1/mgwrsar/R/bias_gwrsar.R |only mgwrsar-1.1/mgwrsar/R/built_Vseq.R |only mgwrsar-1.1/mgwrsar/R/dh_AICc.R |only mgwrsar-1.1/mgwrsar/R/fill_DGPTAB.R |only mgwrsar-1.1/mgwrsar/R/golden_search_bandwidth_AICc.R |only mgwrsar-1.1/mgwrsar/R/init_DGPTAB.R |only mgwrsar-1.1/mgwrsar/R/init_param_tds.R |only mgwrsar-1.1/mgwrsar/R/mgwr_stage1.R |only mgwrsar-1.1/mgwrsar/R/modc.R |only mgwrsar-1.1/mgwrsar/R/model_conf.R |only mgwrsar-1.1/mgwrsar/R/pastlm.R |only mgwrsar-1.1/mgwrsar/R/row_prod.R |only mgwrsar-1.1/mgwrsar/R/shepard_smooth_16tg.R |only mgwrsar-1.1/mgwrsar/R/simu.R |only mgwrsar-1.1/mgwrsar/R/stage1_tds_mgwr.R |only mgwrsar-1.1/mgwrsar/R/stage1_tds_mgwr_H.R |only mgwrsar-1.1/mgwrsar/R/stage2_atds_mgwr.R |only mgwrsar-1.1/mgwrsar/R/starting_model_atds_gwr.R |only mgwrsar-1.1/mgwrsar/R/starting_model_tds_mgwr.R |only mgwrsar-1.1/mgwrsar/R/summary_mgwrsar.R |only mgwrsar-1.1/mgwrsar/R/tds_mgwr.R |only mgwrsar-1.1/mgwrsar/inst/doc/GWR-and-Mixed-GWR-with-spatial-autocorrelation.html.asis |only mgwrsar-1.1/mgwrsar/inst/doc/GWR-with-Space-Time-Kernels.html.asis |only mgwrsar-1.1/mgwrsar/inst/doc/Intro_french_data.html.asis |only mgwrsar-1.1/mgwrsar/inst/doc/Multiscale-GWR-using-top-down-scale-approach.html.asis |only mgwrsar-1.1/mgwrsar/inst/doc/Speeding_up_GWR_like_models.html.asis |only mgwrsar-1.1/mgwrsar/man/INST_C.Rd |only mgwrsar-1.1/mgwrsar/man/PhWY_C.Rd |only mgwrsar-1.1/mgwrsar/man/Proj_C.Rd |only mgwrsar-1.1/mgwrsar/man/QRcpp2_C.Rd |only mgwrsar-1.1/mgwrsar/man/Sl_C.Rd |only mgwrsar-1.1/mgwrsar/man/modc.Rd |only mgwrsar-1.1/mgwrsar/man/tds_mgwr.Rd |only mgwrsar-1.1/mgwrsar/vignettes/GWR-and-Mixed-GWR-with-spatial-autocorrelation.html.asis |only mgwrsar-1.1/mgwrsar/vignettes/GWR-with-Space-Time-Kernels.html.asis |only mgwrsar-1.1/mgwrsar/vignettes/Intro_french_data.html.asis |only mgwrsar-1.1/mgwrsar/vignettes/Multiscale-GWR-using-top-down-scale-approach.html.asis |only mgwrsar-1.1/mgwrsar/vignettes/Speeding_up_GWR_like_models.html.asis |only mgwrsar-1.3.1/mgwrsar/DESCRIPTION | 29 mgwrsar-1.3.1/mgwrsar/MD5 | 206 mgwrsar-1.3.1/mgwrsar/NAMESPACE | 64 mgwrsar-1.3.1/mgwrsar/NEWS.md | 48 mgwrsar-1.3.1/mgwrsar/R/AICc.R | 1 mgwrsar-1.3.1/mgwrsar/R/ApproxiW.R | 15 mgwrsar-1.3.1/mgwrsar/R/Beta_extropolation.R |only mgwrsar-1.3.1/mgwrsar/R/GWR.R | 117 mgwrsar-1.3.1/mgwrsar/R/INST_C.R | 14 mgwrsar-1.3.1/mgwrsar/R/MGWR.R | 166 mgwrsar-1.3.1/mgwrsar/R/MGWRSAR.R | 80 mgwrsar-1.3.1/mgwrsar/R/PhWY_C.R | 14 mgwrsar-1.3.1/mgwrsar/R/Proj_C.R | 12 mgwrsar-1.3.1/mgwrsar/R/QRcpp2_C.R | 13 mgwrsar-1.3.1/mgwrsar/R/Sl_C.R | 14 mgwrsar-1.3.1/mgwrsar/R/TDS_MGWR.R |only mgwrsar-1.3.1/mgwrsar/R/aicc_f.R | 5 mgwrsar-1.3.1/mgwrsar/R/assign_control.R | 2 mgwrsar-1.3.1/mgwrsar/R/atds_gwr.R | 81 mgwrsar-1.3.1/mgwrsar/R/cell.quadtree.R |only mgwrsar-1.3.1/mgwrsar/R/cell.quadtree.leaf.R |only mgwrsar-1.3.1/mgwrsar/R/compute_Rk.R |only mgwrsar-1.3.1/mgwrsar/R/compute_ts.R |only 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Title: Full Featured Implementation of Hash Tables/Associative
Arrays/Dictionaries
Description: Implements a data structure similar to hashes in Perl and dictionaries in Python but with a purposefully R flavor. For objects of appreciable size, access using hashes outperforms native named lists and vectors.
Author: Christopher Brown [aut],
John Hughes [cre, ctb]
Maintainer: John Hughes <drjphughesjr@gmail.com>
Diff between hash versions 2.2.6.3 dated 2023-08-19 and 2.2.6.4 dated 2026-01-21
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Grouped Hyper Data Frame
Description: An S3 class 'groupedHyperframe' that inherits from hyper data frame. Batch processes and aggregation of hyper column(s) over a nested grouping structure.
Author: Tingting Zhan [aut, cre] ,
Inna Chervoneva [ctb]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between groupedHyperframe versions 0.3.2 dated 2025-11-25 and 0.3.3 dated 2026-01-21
groupedHyperframe-0.3.2/groupedHyperframe/R/randLabel_test.R |only groupedHyperframe-0.3.2/groupedHyperframe/man/Math.ppp.Rd |only groupedHyperframe-0.3.2/groupedHyperframe/man/foobar.Rd |only groupedHyperframe-0.3.2/groupedHyperframe/man/superimpose.groupedHyperframe.Rd |only groupedHyperframe-0.3.3/groupedHyperframe/DESCRIPTION | 22 groupedHyperframe-0.3.3/groupedHyperframe/MD5 | 93 ++-- groupedHyperframe-0.3.3/groupedHyperframe/NAMESPACE | 83 +++ groupedHyperframe-0.3.3/groupedHyperframe/R/0PACKAGE.R | 3 groupedHyperframe-0.3.3/groupedHyperframe/R/Defunct.R | 77 +-- groupedHyperframe-0.3.3/groupedHyperframe/R/Math.R |only groupedHyperframe-0.3.3/groupedHyperframe/R/Surv.R |only groupedHyperframe-0.3.3/groupedHyperframe/R/aggregate.R | 13 groupedHyperframe-0.3.3/groupedHyperframe/R/aggregate_marks.R | 10 groupedHyperframe-0.3.3/groupedHyperframe/R/append_marks.R | 57 ++ groupedHyperframe-0.3.3/groupedHyperframe/R/as.groupedHyperframe.R | 4 groupedHyperframe-0.3.3/groupedHyperframe/R/attr_.R |only groupedHyperframe-0.3.3/groupedHyperframe/R/data_doc.R | 1 groupedHyperframe-0.3.3/groupedHyperframe/R/fvlist.R | 41 + groupedHyperframe-0.3.3/groupedHyperframe/R/groupedHyperframe.R | 144 +++++- groupedHyperframe-0.3.3/groupedHyperframe/R/kerndens.R | 6 groupedHyperframe-0.3.3/groupedHyperframe/R/lastLegal.R | 1 groupedHyperframe-0.3.3/groupedHyperframe/R/op_hyperframe.R | 12 groupedHyperframe-0.3.3/groupedHyperframe/R/op_ppp.R | 30 - groupedHyperframe-0.3.3/groupedHyperframe/R/op_ppplist.R | 227 +++++----- groupedHyperframe-0.3.3/groupedHyperframe/R/ppp_S3.R | 48 -- groupedHyperframe-0.3.3/groupedHyperframe/R/rlabelRes.R |only groupedHyperframe-0.3.3/groupedHyperframe/R/superimpose.hyperframe.R | 87 --- groupedHyperframe-0.3.3/groupedHyperframe/R/vectorlist.R | 74 ++- groupedHyperframe-0.3.3/groupedHyperframe/R/vignette.R | 87 +++ groupedHyperframe-0.3.3/groupedHyperframe/R/vtrapz.R | 65 +- groupedHyperframe-0.3.3/groupedHyperframe/inst/doc/intro.html | 16 groupedHyperframe-0.3.3/groupedHyperframe/man/append_marks_set.Rd | 6 groupedHyperframe-0.3.3/groupedHyperframe/man/as.list.fvlist.Rd |only groupedHyperframe-0.3.3/groupedHyperframe/man/attr_.Rd |only groupedHyperframe-0.3.3/groupedHyperframe/man/bib.Rd | 2 groupedHyperframe-0.3.3/groupedHyperframe/man/cli_.Rd | 20 groupedHyperframe-0.3.3/groupedHyperframe/man/cumvtrapz.Rd | 4 groupedHyperframe-0.3.3/groupedHyperframe/man/defunct.Rd | 12 groupedHyperframe-0.3.3/groupedHyperframe/man/dot-ns_generic.Rd |only groupedHyperframe-0.3.3/groupedHyperframe/man/global_envelope_test_.Rd |only groupedHyperframe-0.3.3/groupedHyperframe/man/groupGeneric_fvlist.Rd |only groupedHyperframe-0.3.3/groupedHyperframe/man/groupGeneric_ppp.Rd |only groupedHyperframe-0.3.3/groupedHyperframe/man/groupGeneric_ppplist.Rd |only groupedHyperframe-0.3.3/groupedHyperframe/man/groupGeneric_psp.Rd |only groupedHyperframe-0.3.3/groupedHyperframe/man/groupGeneric_tess.Rd |only groupedHyperframe-0.3.3/groupedHyperframe/man/groupedHyperframe-package.Rd | 7 groupedHyperframe-0.3.3/groupedHyperframe/man/is.vectorlist.Rd | 2 groupedHyperframe-0.3.3/groupedHyperframe/man/kerndens.Rd | 4 groupedHyperframe-0.3.3/groupedHyperframe/man/print.cumv.Rd |only groupedHyperframe-0.3.3/groupedHyperframe/man/print.groupedHyperframe.Rd | 3 groupedHyperframe-0.3.3/groupedHyperframe/man/print.summary.groupedHyperframe.Rd |only groupedHyperframe-0.3.3/groupedHyperframe/man/print.vectorlist.Rd |only groupedHyperframe-0.3.3/groupedHyperframe/man/rds2versiondate.Rd |only groupedHyperframe-0.3.3/groupedHyperframe/man/rlabelRes.Rd |only groupedHyperframe-0.3.3/groupedHyperframe/man/sub-.cumv.Rd |only groupedHyperframe-0.3.3/groupedHyperframe/man/summary.Surv.Rd |only groupedHyperframe-0.3.3/groupedHyperframe/man/summary.groupedHyperframe.Rd |only groupedHyperframe-0.3.3/groupedHyperframe/man/superimpose.hyperframe.Rd | 5 groupedHyperframe-0.3.3/groupedHyperframe/man/t.vectorlist.Rd | 2 groupedHyperframe-0.3.3/groupedHyperframe/man/visualize_vtrapz.Rd | 8 60 files changed, 792 insertions(+), 484 deletions(-)
More information about groupedHyperframe at CRAN
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Title: Fitting Finite Mixture of Scale Mixture of Skew-Normal
Distributions
Description: Functions to fit finite mixture of scale mixture of skew-normal (FM-SMSN) distributions, details in Prates, Lachos and Cabral (2013) <doi: 10.18637/jss.v054.i12>, Cabral, Lachos and Prates (2012) <doi:10.1016/j.csda.2011.06.026> and Basso, Lachos, Cabral and Ghosh (2010) <doi:10.1016/j.csda.2009.09.031>.
Author: Marcos Prates [aut, cre, trl] ,
Victor Lachos [aut] ,
Celso Cabral [aut]
Maintainer: Marcos Prates <marcosop@est.ufmg.br>
Diff between mixsmsn versions 1.1-11 dated 2025-04-23 and 1.1-12 dated 2026-01-21
ChangeLog | 4 ++++ DESCRIPTION | 11 ++++++----- MD5 | 6 +++--- R/mix.print.R | 4 ++-- 4 files changed, 15 insertions(+), 10 deletions(-)
Title: Time Series Forecasting Functions
Description: Fundamental time series forecasting models such as autoregressive integrated moving average (ARIMA), exponential smoothing, and simple moving average are included. For ARIMA models, the output follows the traditional parameterisation by Box and Jenkins (1970, ISBN: 0816210942, 9780816210947). Furthermore, there are functions for detailed time series exploration and decomposition, respectively. All data and result visualisations are generated by 'ggplot2' instead of conventional R graphical output. For more details regarding the theoretical background of the models see Hyndman, R.J. and Athanasopoulos, G. (2021) <https://otexts.com/fpp3/>.
Author: Ka Yui Karl Wu [aut, cre]
Maintainer: Ka Yui Karl Wu <karlwuky@suss.edu.sg>
Diff between tsforecast versions 1.2.1 dated 2025-12-19 and 1.3.0 dated 2026-01-21
tsforecast-1.2.1/tsforecast/R/tsforecast_1.2.1.R |only tsforecast-1.3.0/tsforecast/DESCRIPTION | 8 +-- tsforecast-1.3.0/tsforecast/MD5 | 51 +++++++++++----------- tsforecast-1.3.0/tsforecast/NAMESPACE | 11 ++++ tsforecast-1.3.0/tsforecast/R/tsforecast_1.3.0.R |only tsforecast-1.3.0/tsforecast/inst/examples/tsgarch |only tsforecast-1.3.0/tsforecast/inst/examples/tslm |only tsforecast-1.3.0/tsforecast/man/airport.Rd | 2 tsforecast-1.3.0/tsforecast/man/is.outlier.Rd | 2 tsforecast-1.3.0/tsforecast/man/predict.Rd | 8 +++ tsforecast-1.3.0/tsforecast/man/ts-functions.Rd | 2 tsforecast-1.3.0/tsforecast/man/tsacf.Rd | 9 +++ tsforecast-1.3.0/tsforecast/man/tsarima.Rd | 5 +- tsforecast-1.3.0/tsforecast/man/tsboxplot.Rd | 2 tsforecast-1.3.0/tsforecast/man/tsconvert.Rd | 2 tsforecast-1.3.0/tsforecast/man/tsdecomp.Rd | 2 tsforecast-1.3.0/tsforecast/man/tsdiff.Rd | 2 tsforecast-1.3.0/tsforecast/man/tsesm.Rd | 2 tsforecast-1.3.0/tsforecast/man/tsexplore.Rd | 2 tsforecast-1.3.0/tsforecast/man/tsforecast.Rd | 8 +++ tsforecast-1.3.0/tsforecast/man/tshistogram.Rd | 2 tsforecast-1.3.0/tsforecast/man/tslag.Rd | 8 ++- tsforecast-1.3.0/tsforecast/man/tslineplot.Rd | 2 tsforecast-1.3.0/tsforecast/man/tslm.Rd |only tsforecast-1.3.0/tsforecast/man/tsmltest.Rd | 2 tsforecast-1.3.0/tsforecast/man/tsmodeleval.Rd | 2 tsforecast-1.3.0/tsforecast/man/tsmovav.Rd | 2 tsforecast-1.3.0/tsforecast/man/tsqqplot.Rd | 2 tsforecast-1.3.0/tsforecast/man/tsscatterplot.Rd | 2 29 files changed, 88 insertions(+), 52 deletions(-)
Title: Overlap Detection in n-Dimensional Space
Description: Uses support vector machines to identify a perfectly separating hyperplane (linear or curvilinear) between two entities in high-dimensional space. If this plane exists, the entities do not overlap. Applications include overlap detection in morphological, resource or environmental dimensions. More details can be found in: Brown et al. (2020) <doi:10.1111/2041-210X.13363> .
Author: Matilda Brown [aut, cre] ,
Greg Jordan [aut]
Maintainer: Matilda Brown <m.brown2@kew.org>
Diff between hyperoverlap versions 1.1.3 dated 2025-09-23 and 1.1.4 dated 2026-01-21
DESCRIPTION | 8 +- MD5 | 14 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/hyperoverlap-vignette.R | 4 - inst/doc/hyperoverlap-vignette.Rmd | 4 - inst/doc/hyperoverlap-vignette.html | 109 ++++++++++++++++++++++-------------- vignettes/hyperoverlap-vignette.Rmd | 4 - 8 files changed, 84 insertions(+), 59 deletions(-)
Title: Data Management and Analysis of Tests
Description: A system for the management, assessment, and psychometric analysis of data from educational and psychological tests.
Author: Gunter Maris [aut],
Timo Bechger [aut],
Jesse Koops [aut, cre],
Ivailo Partchev [aut]
Maintainer: Jesse Koops <jesse.koops@cito.nl>
Diff between dexter versions 1.7.0 dated 2025-09-26 and 1.7.2 dated 2026-01-21
DESCRIPTION | 8 +-- MD5 | 54 ++++++++++++------------ NEWS.md | 3 + R/misc_anon.R | 1 R/plausible_values.R | 4 - R/plots.R | 6 ++ R/profile_analysis.R | 10 ++-- R/progress.R | 7 ++- R/resp_data.R | 2 R/standards.R | 4 - R/suf_stats.R | 7 ++- R/theta_functions.R | 6 +- R/tia.R | 9 ++-- build/vignette.rds |binary inst/doc/DIF_vignette.html | 10 ++-- inst/doc/Equating.html | 18 ++++---- inst/doc/Plausible_Values.html | 16 +++---- inst/doc/Test_Individual_differences.html | 14 +++--- inst/doc/dexter.html | 66 +++++++++++++++--------------- inst/doc/profile-plots.html | 20 ++++----- man/information.Rd | 6 +- man/plausible_values.Rd | 4 - man/plot.enorm.Rd | 3 - man/profile_plot.Rd | 4 + man/profiles.Rd | 10 ++-- man/standards_3dc.Rd | 2 man/standards_db.Rd | 2 man/tia_tables.Rd | 3 - 28 files changed, 163 insertions(+), 136 deletions(-)
Title: Optimal Pairing and Matching via Linear Assignment
Description: Solves optimal pairing and matching problems using linear assignment
algorithms. Provides implementations of the Hungarian method (Kuhn 1955)
<doi:10.1002/nav.3800020109>, Jonker-Volgenant shortest path algorithm
(Jonker and Volgenant 1987) <doi:10.1007/BF02278710>, Auction algorithm
(Bertsekas 1988) <doi:10.1007/BF02186476>, cost-scaling
(Goldberg and Kennedy 1995) <doi:10.1007/BF01585996>, scaling algorithms
(Gabow and Tarjan 1989) <doi:10.1137/0218069>, push-relabel (Goldberg and
Tarjan 1988) <doi:10.1145/48014.61051>, and Sinkhorn entropy-regularized
transport (Cuturi 2013) <doi:10.48550/arxiv.1306.0895>. Designed for
matching plots, sites, samples, or any pairwise optimization problem.
Supports rectangular matrices, forbidden assignments, data frame inputs,
batch solving, k-best solutions, and pixel-level image morphing for
visualization. Includes automatic preprocessing with variable health
checks, multiple scaling methods (standardized, [...truncated...]
Author: Gilles Colling [aut, cre, cph]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between couplr versions 1.0.8 dated 2026-01-21 and 1.0.10 dated 2026-01-21
DESCRIPTION | 6 - MD5 | 48 +++++----- inst/doc/algorithms.R | 24 ++--- inst/doc/algorithms.Rmd | 54 +++++------ inst/doc/algorithms.html | 72 +++++++-------- inst/doc/comparison.R | 2 inst/doc/comparison.Rmd | 30 +++--- inst/doc/comparison.html | 144 +++++++++++++++--------------- inst/doc/getting-started.R | 2 inst/doc/getting-started.Rmd | 2 inst/doc/getting-started.html | 6 - inst/doc/matching-workflows.Rmd | 16 +-- inst/doc/matching-workflows.html | 32 +++--- inst/doc/pixel-morphing.Rmd | 172 ++++++++++++++++++------------------ inst/doc/pixel-morphing.html | 174 ++++++++++++++++++------------------- inst/doc/troubleshooting.Rmd | 2 inst/doc/troubleshooting.html | 8 - src/solvers/solve_auction.cpp | 50 ++++++++-- src/solvers/solve_auction_rcpp.cpp | 27 ++++- vignettes/algorithms.Rmd | 54 +++++------ vignettes/comparison.Rmd | 30 +++--- vignettes/getting-started.Rmd | 2 vignettes/matching-workflows.Rmd | 16 +-- vignettes/pixel-morphing.Rmd | 172 ++++++++++++++++++------------------ vignettes/troubleshooting.Rmd | 2 25 files changed, 595 insertions(+), 552 deletions(-)
Title: OLS, Moderated, Logistic, and Count Regressions Made Simple
Description: Provides SPSS- and SAS-like output for least squares multiple regression,
logistic regression, and count variable regressions. Detailed output is also provided for
OLS moderated regression, interaction plots, and Johnson-Neyman
regions of significance. The output includes standardized
coefficients, partial and semi-partial correlations, collinearity diagnostics,
plots of residuals, and detailed information about simple slopes for interactions.
The output for some functions includes Bayes Factors and, if requested,
regression coefficients from Bayesian Markov Chain Monte Carlo analyses.
There are numerous options for model plots.
The REGIONS_OF_SIGNIFICANCE function also provides
Johnson-Neyman regions of significance and plots of interactions for both lm
and lme models. There is also a function for partial and semipartial
correlations and a function for conducting Cohen's
set correlation analyses.
Author: Brian P. O'Connor [aut, cre]
Maintainer: Brian P. O'Connor <brian.oconnor@ubc.ca>
Diff between SIMPLE.REGRESSION versions 0.2.8 dated 2025-11-19 and 0.3.1 dated 2026-01-21
DESCRIPTION | 8 MD5 | 66 - NAMESPACE | 4 R/COUNT_REGRESSION.R | 477 +++++-------- R/LOGISTIC_REGRESSION.R | 347 +++------ R/MODERATED_REGRESSION.R | 1163 +++++++++++++------------------- R/OLS_REGRESSION.R | 532 +-------------- R/PLOT_MODEL.R | 175 +--- R/REGIONS_OF_SIGNIFICANCE.R | 29 R/utilities_boc.R | 1269 ++++++++++++++++++++++++++++-------- data/data_Halvorson_2022_pois.rda |binary data/data_Kremelburg_2011.rda |binary data/data_Meyers_2013.rda |binary man/COUNT_REGRESSION.Rd | 79 +- man/LOGISTIC_REGRESSION.Rd | 61 + man/MODERATED_REGRESSION.Rd | 70 + man/OLS_REGRESSION.Rd | 84 +- man/PARTIAL_COR.Rd | 9 man/PLOT_MODEL.Rd | 23 man/REGIONS_OF_SIGNIFICANCE.Rd | 8 man/SET_CORRELATION.Rd | 9 man/SIMPLE.REGRESSION-package.Rd | 11 man/data_Bauer_Curran_2005.Rd | 1 man/data_Cohen_Aiken_West_2003_9.Rd | 3 man/data_DeLeo_2013.Rd | 6 man/data_Halvorson_2022_log.Rd | 5 man/data_Halvorson_2022_pois.Rd | 6 man/data_Huitema_2011.Rd | 2 man/data_Kremelburg_2011.Rd | 13 man/data_Meyers_2013.Rd | 1 man/data_OConnor_Dvorak_2001.Rd | 3 man/data_Orme_2009_2.Rd | 4 man/data_Orme_2009_5.Rd | 9 man/data_Pituch_Stevens_2016.Rd | 1 34 files changed, 2260 insertions(+), 2218 deletions(-)
More information about SIMPLE.REGRESSION at CRAN
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Title: Reading, Quality Control and Preprocessing of MBA (Multiplex
Bead Assay) Data
Description: Speeds up the process of loading raw data from MBA (Multiplex Bead Assay) examinations, performs quality control checks, and automatically normalises the data, preparing it for more advanced, downstream tasks. The main objective of the package is to create a simple environment for a user, who does not necessarily have experience with R language. The package is developed within the project 'PvSTATEM', which is an international project aiming for malaria elimination.
Author: Jakub Grzywaczewski [aut, cre],
Tymoteusz Kwiecinski [aut] ,
Mateusz Nizwantowski [aut],
Przemyslaw Biecek [ths] ,
Nuno Sepulveda [ths]
Maintainer: Jakub Grzywaczewski <jakubzgrzywaczewski@gmail.com>
Diff between SerolyzeR versions 1.3.1 dated 2025-10-21 and 1.4.0 dated 2026-01-21
SerolyzeR-1.3.1/SerolyzeR/inst/img/overview.png |only SerolyzeR-1.4.0/SerolyzeR/DESCRIPTION | 9 - SerolyzeR-1.4.0/SerolyzeR/MD5 | 65 ++++--- SerolyzeR-1.4.0/SerolyzeR/NAMESPACE | 1 SerolyzeR-1.4.0/SerolyzeR/R/classes-plate_builder.R | 78 ++++++-- SerolyzeR-1.4.0/SerolyzeR/R/config.R | 4 SerolyzeR-1.4.0/SerolyzeR/R/generate_report.R | 1 SerolyzeR-1.4.0/SerolyzeR/R/helpers.R | 67 +++++++ SerolyzeR-1.4.0/SerolyzeR/R/parser-bioplex.R |only SerolyzeR-1.4.0/SerolyzeR/R/parser.R | 55 +++++- SerolyzeR-1.4.0/SerolyzeR/R/plots-plate.R | 2 SerolyzeR-1.4.0/SerolyzeR/R/plots-standard_curve.R | 32 ++- SerolyzeR-1.4.0/SerolyzeR/R/process-dir.R | 8 SerolyzeR-1.4.0/SerolyzeR/R/process-file.R | 2 SerolyzeR-1.4.0/SerolyzeR/R/process-plate.R | 2 SerolyzeR-1.4.0/SerolyzeR/build/partial.rdb |binary SerolyzeR-1.4.0/SerolyzeR/inst/doc/example_script.Rmd | 2 SerolyzeR-1.4.0/SerolyzeR/inst/doc/example_script.html | 50 ++--- SerolyzeR-1.4.0/SerolyzeR/inst/extdata/synthetic_bioplex.xlsx |only SerolyzeR-1.4.0/SerolyzeR/inst/extdata/synthetic_bioplex_layout.xlsx |only SerolyzeR-1.4.0/SerolyzeR/inst/img/EU.jpg |binary SerolyzeR-1.4.0/SerolyzeR/inst/templates/levey_jennings_report_template.Rmd | 87 +++++++--- SerolyzeR-1.4.0/SerolyzeR/inst/templates/plate_report_template.Rmd | 58 +++--- SerolyzeR-1.4.0/SerolyzeR/man/extract_header_information.Rd |only SerolyzeR-1.4.0/SerolyzeR/man/get_header_end_idx.Rd |only SerolyzeR-1.4.0/SerolyzeR/man/handle_datetime.Rd | 4 SerolyzeR-1.4.0/SerolyzeR/man/move_legend_to_separate_plot.Rd |only SerolyzeR-1.4.0/SerolyzeR/man/plot_standard_curve_stacked.Rd | 8 SerolyzeR-1.4.0/SerolyzeR/man/process_dir.Rd | 4 SerolyzeR-1.4.0/SerolyzeR/man/process_file.Rd | 2 SerolyzeR-1.4.0/SerolyzeR/man/read_bioplex_format.Rd |only SerolyzeR-1.4.0/SerolyzeR/man/read_luminex_data.Rd | 4 SerolyzeR-1.4.0/SerolyzeR/man/save_csv.Rd |only SerolyzeR-1.4.0/SerolyzeR/man/translate_sample_names_to_sample_types.Rd | 4 SerolyzeR-1.4.0/SerolyzeR/tests/testthat/test-integration.R | 12 + SerolyzeR-1.4.0/SerolyzeR/tests/testthat/test-plate_builder.R | 50 +++++ SerolyzeR-1.4.0/SerolyzeR/tests/testthat/test-process-dir.R | 2 SerolyzeR-1.4.0/SerolyzeR/vignettes/example_script.Rmd | 2 38 files changed, 455 insertions(+), 160 deletions(-)
Title: Working with Ethiopian Dates
Description: A robust and efficient solution for working with Ethiopian dates. It can seamlessly convert to and from Gregorian dates.
It is designed to be compatible with the 'tidyverse' data workflow, including plotting with 'ggplot2'.
It ensures lightning-fast computations by integrating high-performance 'C++' code through 'Rcpp' package.
Author: Gutama Girja Urago [aut, cre, cph]
Maintainer: Gutama Girja Urago <girjagutama@gmail.com>
Diff between ethiodate versions 0.3.0 dated 2025-12-19 and 0.3.1 dated 2026-01-21
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/Ops-date.R | 8 ++++---- README.md | 2 +- inst/doc/parsing.html | 10 +++++----- tests/testthat/test-Ops.R | 2 +- 7 files changed, 26 insertions(+), 22 deletions(-)
Title: Miscellaneous Helper Functions for B. Bischl
Description: Miscellaneous helper functions for and from B. Bischl and
some other guys, mainly for package development.
Author: Bernd Bischl [aut, cre],
Michel Lang [aut],
Jakob Bossek [aut],
Daniel Horn [aut],
Jakob Richter [aut],
Dirk Surmann [aut]
Maintainer: Bernd Bischl <bernd_bischl@gmx.net>
Diff between BBmisc versions 1.13 dated 2022-09-29 and 1.13.1 dated 2026-01-21
DESCRIPTION | 8 MD5 | 353 +++++++++++++++++----------------- NEWS.md |only R/FileCache.R | 3 R/addClasses.R | 5 R/argsAsNamedList.R | 3 R/asMatrix.R | 5 R/asQuoted.R | 3 R/binPack.R | 3 R/btwn.R | 5 R/catf.R | 3 R/checkArg.R | 8 R/checkListElementClass.R | 3 R/chunk.R | 3 R/clipString.R | 5 R/coalesce.R | 2 R/collapse.R | 3 R/collapsef.R | 3 R/computeMode.R | 3 R/convertDataFrameCols.R | 5 R/convertInteger.R | 6 R/convertListOfRowsToDataFrame.R | 2 R/convertMatrixType.R | 3 R/convertRowsToList.R | 3 R/convertToShortString.R | 2 R/dapply.R | 3 R/directory.R | 6 R/do.call2.R | 3 R/dropNamed.R | 5 R/ensureVector.R | 3 R/explode.R | 3 R/extractSubList.R | 5 R/factor.R | 3 R/filterNull.R | 5 R/getAttributeNames.R | 6 R/getClass1.R | 5 R/getFirstLast.R | 5 R/getMaxColIndex.R | 3 R/getMaxIndex.R | 3 R/getOperatingSystem.R | 5 R/getRelativePath.R | 3 R/getUnixTime.R | 3 R/getUsedFactorLevels.R | 3 R/hasAttributes.R | 5 R/insert.R | 3 R/isExpensiveExampleOk.R | 3 R/isFALSE.R | 5 R/isProperlyNamed.R | 3 R/isScalarNA.R | 3 R/isScalarValue.R | 3 R/isSubset.R | 5 R/isSuperset.R | 5 R/isValidName.R | 5 R/is_error.R | 3 R/itostr.R | 3 R/lib.R | 3 R/load2.R | 5 R/lsort.R | 5 R/makeDataFrame.R | 5 R/makeProgressBar.R | 2 R/makeS3Obj.R | 3 R/makeSimpleFileLogger.R | 3 R/mapValues.R | 2 R/messagef.R | 3 R/namedList.R | 2 R/names2.R | 3 R/nin.R | 5 R/normalize.R | 2 R/optimizeSubInts.R | 2 R/printHead.R | 3 R/printStrToChar.R | 5 R/printToChar.R | 5 R/rangeVal.R | 3 R/requirePackages.R | 2 R/rowLapply.R | 3 R/save2.R | 3 R/seq.R | 3 R/setAttribute.R | 5 R/setClasses.R | 5 R/setRowColNames.R | 5 R/setValue.R | 3 R/sortByCol.R | 5 R/splitPath.R | 3 R/splitTime.R | 3 R/stopf.R | 3 R/strrepeat.R | 5 R/suppressAll.R | 5 R/symdiff.R | 5 R/system3.R | 3 R/toRangeStr.R | 5 R/vapply.R | 2 R/warningf.R | 3 R/which.first.R | 5 R/zzz_deprecated.R | 5 man/addClasses.Rd | 4 man/argsAsNamedList.Rd | 2 man/asMatrixCols.Rd | 4 man/asQuoted.Rd | 2 man/binPack.Rd | 2 man/btwn.Rd | 4 man/cFactor.Rd | 2 man/catf.Rd | 2 man/checkArg.Rd | 2 man/checkListElementClass.Rd | 2 man/chunk.Rd | 2 man/clipString.Rd | 4 man/coalesce.Rd | 2 man/collapse.Rd | 2 man/collapsef.Rd | 5 man/computeMode.Rd | 2 man/convertDataFrameCols.Rd | 4 man/convertInteger.Rd | 2 man/convertIntegers.Rd | 2 man/convertListOfRowsToDataFrame.Rd | 2 man/convertMatrixType.Rd | 2 man/convertRowsToList.Rd | 2 man/convertToShortString.Rd | 2 man/dapply.Rd | 2 man/deprecated.Rd | 2 man/do.call2.Rd | 2 man/dropNamed.Rd | 4 man/ensureVector.Rd | 2 man/explode.Rd | 2 man/extractSubList.Rd | 4 man/filterNull.Rd | 2 man/getAttributeNames.Rd | 6 man/getClass1.Rd | 4 man/getFirst.Rd | 4 man/getMaxIndex.Rd | 2 man/getMaxIndexOfRows.Rd | 2 man/getOperatingSystem.Rd | 4 man/getUnixTime.Rd | 2 man/getUsedFactorLevels.Rd | 2 man/hasAttributes.Rd | 4 man/insert.Rd | 2 man/isExpensiveExampleOk.Rd | 2 man/isFALSE.Rd | 4 man/isScalarNA.Rd | 2 man/isSubset.Rd | 4 man/isSuperset.Rd | 4 man/isValidName.Rd | 2 man/lib.Rd | 2 man/load2.Rd | 4 man/lsort.Rd | 4 man/makeDataFrame.Rd | 4 man/makeFileCache.Rd | 2 man/makeProgressBar.Rd | 2 man/makeS3Obj.Rd | 2 man/makeSimpleFileLogger.Rd | 2 man/messagef.Rd | 2 man/namedList.Rd | 2 man/names2.Rd | 2 man/nin.Rd | 4 man/normalize.Rd | 2 man/optimizeSubInts.Rd | 2 man/printHead.Rd | 2 man/printStrToChar.Rd | 4 man/printToChar.Rd | 4 man/rangeVal.Rd | 2 man/requirePackages.Rd | 2 man/rowLapply.Rd | 2 man/save2.Rd | 2 man/seq_row.Rd | 2 man/setAttribute.Rd | 4 man/setClasses.Rd | 4 man/setRowNames.Rd | 4 man/setValue.Rd | 2 man/sortByCol.Rd | 4 man/splitTime.Rd | 2 man/stopf.Rd | 2 man/strrepeat.Rd | 2 man/suppressAll.Rd | 2 man/symdiff.Rd | 4 man/system3.Rd | 2 man/toRangeStr.Rd | 4 man/warningf.Rd | 2 man/which.first.Rd | 4 tests/testthat/test_requirePackages.R | 1 178 files changed, 536 insertions(+), 394 deletions(-)
Title: Log Execution of Scripts
Description: Logging of scripts suitable for clinical trials using
'Quarto' to create nice human readable logs. 'whirl' enables
execution of scripts in batch, while simultaneously creating logs for
the execution of each script, and providing an overview summary log of
the entire batch execution.
Author: Aksel Thomsen [aut, cre],
Lovemore Gakava [aut],
Cervan Girard [aut],
Kristian Troejelsgaard [aut],
Steffen Falgreen Larsen [aut],
Vladimir Obucina [aut],
Michael Svingel [aut],
Skander Mulder [aut],
Oliver Lundsgaard [aut],
Novo Nordisk A/S [cph]
Maintainer: Aksel Thomsen <oath@novonordisk.com>
Diff between whirl versions 0.3.1 dated 2025-08-25 and 0.3.2 dated 2026-01-21
DESCRIPTION | 12 MD5 | 56 NEWS.md | 7 R/log.R | 34 R/mdformats.R | 2 R/renv.R | 2 R/run.R | 9 R/whirl-options.R | 6 R/whirl_r_session.R | 107 - build/vignette.rds |binary inst/documents/dummy.qmd | 19 inst/documents/log.qmd | 39 inst/documents/python.qmd | 5 inst/examples/prg1_log.html |only inst/examples/success_log.html |only man/run.Rd | 5 man/whirl-options-params.Rd | 2 man/whirl-options.Rd | 10 tests/testthat/scripts/error_log.html | 2042 ++++++---------------- tests/testthat/scripts/py_dependencies_log.html | 2206 +++++++----------------- tests/testthat/scripts/py_error_log.html | 2073 ++++++---------------- tests/testthat/scripts/py_success_log.html | 2067 ++++++---------------- tests/testthat/scripts/py_warning_log.html | 2069 ++++++---------------- tests/testthat/scripts/success_log.html | 2037 ++++++---------------- tests/testthat/scripts/warning_log.html | 2051 ++++++---------------- tests/testthat/test-examples.R | 1 tests/testthat/test-mdformats.R | 4 tests/testthat/test-python.R | 13 tests/testthat/test-run.R | 17 tests/testthat/test-whirl_r_session.R | 6 30 files changed, 4473 insertions(+), 10428 deletions(-)
Title: Rocket-Fast Clinical Research Reporting
Description: Description of the tables, both grouped and not grouped, with some associated data management actions,
such as sorting the terms of the variables and deleting terms with zero numbers.
Author: USMR CHU de Bordeaux [aut, cre],
Valentine Renaudeau [aut],
Marion Kret [aut],
Matisse Decilap [aut],
Sahardid Mohamed Houssein [aut],
Thomas Ferte [aut]
Maintainer: USMR CHU de Bordeaux <astreinte.usmr@chu-bordeaux.fr>
Diff between RastaRocket versions 1.0.0 dated 2025-11-20 and 1.0.1 dated 2026-01-21
RastaRocket-1.0.0/RastaRocket/R/ordonner_var_qualitatives_function.R |only RastaRocket-1.0.0/RastaRocket/man/ordonner_variables_qualitatives.Rd |only RastaRocket-1.0.1/RastaRocket/DESCRIPTION | 6 RastaRocket-1.0.1/RastaRocket/MD5 | 30 RastaRocket-1.0.1/RastaRocket/NAMESPACE | 1 RastaRocket-1.0.1/RastaRocket/NEWS.md | 23 RastaRocket-1.0.1/RastaRocket/R/ajouter_label_ndm_function.R | 45 - RastaRocket-1.0.1/RastaRocket/R/desc_var_function.R | 28 RastaRocket-1.0.1/RastaRocket/R/prepare_table.R | 38 RastaRocket-1.0.1/RastaRocket/README.md | 18 RastaRocket-1.0.1/RastaRocket/inst/doc/DescribeAE.html | 446 +++++----- RastaRocket-1.0.1/RastaRocket/inst/doc/RastaRocketVignette.Rmd | 4 RastaRocket-1.0.1/RastaRocket/inst/doc/RastaRocketVignette.html | 7 RastaRocket-1.0.1/RastaRocket/inst/doc/SetupProject.html | 4 RastaRocket-1.0.1/RastaRocket/man/desc_var.Rd | 2 RastaRocket-1.0.1/RastaRocket/man/prepare_table.Rd | 2 RastaRocket-1.0.1/RastaRocket/vignettes/RastaRocketVignette.Rmd | 4 17 files changed, 344 insertions(+), 314 deletions(-)
Title: An Implementation of Rapid Assessment Method for Older People
Description: An implementation of the Rapid Assessment Method for Older People
or RAM-OP <https://www.helpage.org/resource/rapid-assessment-method-for-older-people-ramop-manual/>.
It provides various functions that allow the user to design and plan the
assessment and analyse the collected data. RAM-OP provides accurate and
reliable estimates of the needs of older people.
Author: Mark Myatt [aut, cph] ,
Ernest Guevarra [aut, cre, cph] ,
Pascale Fritsch [aut],
Katja Siling [aut],
HelpAge International [cph],
Elrha [fnd]
Maintainer: Ernest Guevarra <ernest@guevarra.io>
Diff between oldr versions 0.2.3 dated 2025-01-24 and 0.2.4 dated 2026-01-21
DESCRIPTION | 16 MD5 | 44 NAMESPACE | 4 NEWS.md | 9 R/00-oldr.R | 6 R/01-opIndicators.R | 2 R/05-merge_op.R | 11 R/08-report.R | 49 README.md | 82 - build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 inst/WORDLIST | 6 inst/doc/oldr.html | 97 + inst/doc/ram_op_workflow.html | 2264 ++++++++++++++++++++++------------------ man/create_op.Rd | 2 man/merge_op.Rd | 6 man/oldr.Rd | 2 man/report_op_docx.Rd | 10 man/report_op_html.Rd | 10 man/report_op_odt.Rd | 10 man/report_op_pdf.Rd | 4 tests/testthat/test-10-report.R | 36 23 files changed, 1545 insertions(+), 1129 deletions(-)
Title: Generalised Linear Mixed Models in R
Description: Specification, analysis, simulation, and fitting of generalised linear mixed models.
Includes Markov Chain Monte Carlo Maximum likelihood model fitting for a range of models,
non-linear fixed effect specifications, a wide range of flexible covariance functions that can be combined arbitrarily,
robust and bias-corrected standard error estimation, power calculation, data simulation, and more.
Author: Sam Watson [aut, cre]
Maintainer: Sam Watson <S.I.Watson@bham.ac.uk>
Diff between glmmrBase versions 1.1.0 dated 2025-09-29 and 1.2.0 dated 2026-01-21
glmmrBase-1.1.0/glmmrBase/inst/include/glmmr/optim/lbfgs |only glmmrBase-1.1.0/glmmrBase/inst/include/glmmr/optim/lbfgs.h |only glmmrBase-1.1.0/glmmrBase/inst/include/glmmr/optim/lbfgsb.h |only glmmrBase-1.2.0/glmmrBase/DESCRIPTION | 16 glmmrBase-1.2.0/glmmrBase/MD5 | 68 glmmrBase-1.2.0/glmmrBase/R/Betadist.R | 13 glmmrBase-1.2.0/glmmrBase/R/R6Model.R | 641 ++--- glmmrBase-1.2.0/glmmrBase/R/R6covariance.R | 34 glmmrBase-1.2.0/glmmrBase/R/RcppExports.R | 128 - glmmrBase-1.2.0/glmmrBase/README.md |only glmmrBase-1.2.0/glmmrBase/build/partial.rdb |binary glmmrBase-1.2.0/glmmrBase/inst/include/glmmr.h | 36 glmmrBase-1.2.0/glmmrBase/inst/include/glmmr/algo.h | 14 glmmrBase-1.2.0/glmmrBase/inst/include/glmmr/ar1covariance.hpp |only glmmrBase-1.2.0/glmmrBase/inst/include/glmmr/covariance.hpp | 824 ++---- glmmrBase-1.2.0/glmmrBase/inst/include/glmmr/family.hpp | 11 glmmrBase-1.2.0/glmmrBase/inst/include/glmmr/general.h | 27 glmmrBase-1.2.0/glmmrBase/inst/include/glmmr/hsgpcovariance.hpp | 185 - glmmrBase-1.2.0/glmmrBase/inst/include/glmmr/interpreter.h | 91 glmmrBase-1.2.0/glmmrBase/inst/include/glmmr/maths.h | 643 +++-- glmmrBase-1.2.0/glmmrBase/inst/include/glmmr/matrixw.hpp | 23 glmmrBase-1.2.0/glmmrBase/inst/include/glmmr/model.hpp | 277 +- glmmrBase-1.2.0/glmmrBase/inst/include/glmmr/modelbits.hpp | 82 glmmrBase-1.2.0/glmmrBase/inst/include/glmmr/modelmatrix.hpp | 801 ++---- glmmrBase-1.2.0/glmmrBase/inst/include/glmmr/modelmcmc.hpp | 239 - glmmrBase-1.2.0/glmmrBase/inst/include/glmmr/modeloptim.hpp | 1278 ++++------ glmmrBase-1.2.0/glmmrBase/inst/include/glmmr/nngpcovariance.hpp | 241 - glmmrBase-1.2.0/glmmrBase/inst/include/glmmr/optim/optim.h | 703 ----- glmmrBase-1.2.0/glmmrBase/inst/include/glmmr/randomeffects.hpp | 101 glmmrBase-1.2.0/glmmrBase/man/Covariance.Rd | 5 glmmrBase-1.2.0/glmmrBase/man/Model.Rd | 294 +- glmmrBase-1.2.0/glmmrBase/man/exponential.Rd |only glmmrBase-1.2.0/glmmrBase/src/RcppExports.cpp | 432 +-- glmmrBase-1.2.0/glmmrBase/src/model_module.cpp | 603 ++-- 34 files changed, 3534 insertions(+), 4276 deletions(-)
Title: 'vcd' Extensions and Additions
Description: Provides additional data sets, methods and documentation to complement the 'vcd' package for Visualizing Categorical Data
and the 'gnm' package for Generalized Nonlinear Models.
In particular, 'vcdExtra' extends mosaic, assoc and sieve plots from 'vcd' to handle 'glm()' and 'gnm()' models and
adds a 3D version in 'mosaic3d'. Additionally, methods are provided for comparing and visualizing lists of
'glm' and 'loglm' objects. This package is now a support package for the book, "Discrete Data Analysis with R" by
Michael Friendly and David Meyer.
Author: Michael Friendly [aut, cre] ,
David Meyer [ctb],
Achim Zeileis [ctb] ,
Duncan Murdoch [ctb],
Heather Turner [ctb] ,
David Firth [ctb],
Daniel Sabanes Bove [ctb],
Matt Kumar [ctb],
Shuguang Sun [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between vcdExtra versions 0.8.7 dated 2025-12-11 and 0.9.0 dated 2026-01-21
DESCRIPTION | 49 ++++++++++++----------- MD5 | 57 ++++++++++++++------------- NAMESPACE | 3 + NEWS.md | 14 ++++++ R/data.R | 4 - R/datasets.R | 86 +++++++++++++++++++++++++---------------- R/loglin-utilities.R | 36 +++-------------- R/woolf_test.R |only build/vignette.rds |binary inst/doc/a1-creating.html | 9 ++-- inst/doc/a2-tests.html | 23 ++++++---- inst/doc/a3-loglinear.html | 9 ++-- inst/doc/a4-mosaics.html | 9 ++-- inst/doc/a5-demo-housing.html | 9 ++-- inst/doc/a6-mobility.html | 9 ++-- inst/doc/a7-continuous.html | 13 +++--- inst/doc/datasets.html | 9 ++-- inst/doc/tidyCats.Rmd | 18 +++++--- inst/doc/tidyCats.html | 35 ++++++++++------ man/CMHtest.Rd | 1 man/Depends.Rd | 2 man/GKgamma.Rd | 1 man/HLtest.Rd | 1 man/WorkerSat.Rd | 2 man/datasets.Rd | 27 +++++++----- man/figures |only man/loglin-utilities.Rd | 36 +++-------------- man/woolf_test.Rd |only man/zero.test.Rd | 3 - vignettes/fig/tidyCat-logo.png |only vignettes/tidyCats.Rmd | 18 +++++--- 31 files changed, 264 insertions(+), 219 deletions(-)
Title: NHDPlus Tools
Description: Tools for traversing and working with National Hydrography Dataset Plus (NHDPlus) data. All methods implemented in 'nhdplusTools' are available in the NHDPlus documentation available from the US Environmental Protection Agency <https://www.epa.gov/waterdata/basic-information>.
Author: David Blodgett [aut, cre] ,
Mike Johnson [aut] ,
Marc Weber [ctb] ,
Josh Erickson [ctb],
Lauren Koenig [ctb]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between nhdplusTools versions 1.4.1 dated 2025-12-05 and 1.4.2 dated 2026-01-21
DESCRIPTION | 6 MD5 | 75 +- NAMESPACE | 1 NEWS.md | 5 R/calc_network.R | 124 ++- R/discover_nhdplus.R | 141 ++-- R/get_nhdplus.R | 5 R/get_nhdplushr.R | 698 +++++++++++----------- R/get_nldi.R | 4 R/get_oaproc.R | 8 R/oafeat_tools.R | 53 + R/plot_nhdplus.R | 3 R/run_plus_attributes.R | 5 R/subset_nhdplus.R | 5 inst/doc/get_3dhp_data.html | 5 inst/doc/get_data_overview.R | 2 inst/doc/get_data_overview.Rmd | 686 ++++++++++----------- inst/doc/get_data_overview.html | 69 -- inst/doc/indexing.html | 16 inst/doc/nhdplusTools.html | 197 ++---- inst/doc/nhdplushr.html | 30 inst/doc/plot_nhdplus.html | 19 inst/extdata/3dhp_yahara_flowlines.R |only man/add_plus_network_attributes.Rd | 2 man/calculate_arbolate_sum.Rd | 2 man/calculate_total_drainage_area.Rd | 2 man/discover_nhdplus_id.Rd | 16 man/get_nhdplus.Rd | 4 man/get_split_catchment.Rd | 8 man/query_usgs_oafeat.Rd | 1 tests/testthat/test_00_plot_integration_nhdplus.R | 1 tests/testthat/test_02_subset.R | 4 tests/testthat/test_02_subset_extras.R | 370 +++++------ tests/testthat/test_calc_network.R | 211 +++--- tests/testthat/test_geoconnex.R | 2 tests/testthat/test_get_codes.R | 258 ++++---- tests/testthat/test_get_path.R | 311 ++++----- tests/testthat/test_run_plus_attributes.R | 8 vignettes/get_data_overview.Rmd | 686 ++++++++++----------- 39 files changed, 2050 insertions(+), 1993 deletions(-)
Title: Wavelet Methods for Analysing Locally Stationary Time Series
Description: Fitting models for, and simulation of, trend locally stationary
wavelet (TLSW) time series models, which take account of time-varying
trend and dependence structure in a univariate time series. The TLSW model,
and its estimation, is described in McGonigle, Killick and Nunes (2022a)
<doi:10.1111/jtsa.12643>, (2022b) <doi:10.1214/22-EJS2044>. Further information regarding the use of the package, along with detailed examples, can be found in McGonigle, Killick and Nunes (2025) <doi:10.18637/jss.v115.i10>. New users will
likely want to start with the TLSW function.
Author: Euan T. McGonigle [aut, cre],
Rebecca Killick [aut],
Matthew Nunes [aut]
Maintainer: Euan T. McGonigle <e.t.mcgonigle@soton.ac.uk>
Diff between TrendLSW versions 1.0.4 dated 2025-11-24 and 1.0.6 dated 2026-01-21
TrendLSW-1.0.4/TrendLSW/data/celegensbio.RData |only TrendLSW-1.0.4/TrendLSW/man/celegensbio.Rd |only TrendLSW-1.0.6/TrendLSW/DESCRIPTION | 8 ++++---- TrendLSW-1.0.6/TrendLSW/MD5 | 17 +++++++++-------- TrendLSW-1.0.6/TrendLSW/NEWS.md | 8 ++++++++ TrendLSW-1.0.6/TrendLSW/R/TLSW.R | 3 +++ TrendLSW-1.0.6/TrendLSW/R/TLSWlacf.R | 4 ++++ TrendLSW-1.0.6/TrendLSW/data/celegansbio.RData |only TrendLSW-1.0.6/TrendLSW/inst |only TrendLSW-1.0.6/TrendLSW/man/TLSW.Rd | 3 +++ TrendLSW-1.0.6/TrendLSW/man/TLSWlacf.Rd | 3 +++ TrendLSW-1.0.6/TrendLSW/man/celegansbio.Rd |only 12 files changed, 34 insertions(+), 12 deletions(-)
Title: Tidy Complex 'JSON'
Description: Turn complex 'JSON' data into tidy data frames.
Author: Jeremy Stanley [aut],
Cole Arendt [aut, cre]
Maintainer: Cole Arendt <cole@benetist.com>
This is a re-admission after prior archival of version 0.3.2 dated 2023-01-06
Diff between tidyjson versions 0.3.2 dated 2023-01-06 and 0.3.3.1 dated 2026-01-21
tidyjson-0.3.2/tidyjson/man/as_tibble.Rd |only tidyjson-0.3.2/tidyjson/man/bind_rows.Rd |only tidyjson-0.3.2/tidyjson/man/filter.Rd |only tidyjson-0.3.2/tidyjson/man/pipe.Rd |only tidyjson-0.3.3.1/tidyjson/DESCRIPTION | 12 tidyjson-0.3.3.1/tidyjson/MD5 | 35 tidyjson-0.3.3.1/tidyjson/NAMESPACE | 3 tidyjson-0.3.3.1/tidyjson/NEWS.md | 7 tidyjson-0.3.3.1/tidyjson/R/json_schema.R | 2 tidyjson-0.3.3.1/tidyjson/R/tbl_json.R | 3 tidyjson-0.3.3.1/tidyjson/R/tidyjson-package.R | 3 tidyjson-0.3.3.1/tidyjson/R/utils.R | 27 tidyjson-0.3.3.1/tidyjson/README.md | 215 +- tidyjson-0.3.3.1/tidyjson/build/vignette.rds |binary tidyjson-0.3.3.1/tidyjson/inst/doc/introduction-to-tidyjson.R | 12 tidyjson-0.3.3.1/tidyjson/inst/doc/introduction-to-tidyjson.html | 392 ++--- tidyjson-0.3.3.1/tidyjson/inst/doc/visualizing-json.R | 10 tidyjson-0.3.3.1/tidyjson/inst/doc/visualizing-json.html | 774 +++++----- tidyjson-0.3.3.1/tidyjson/man/json_schema.Rd | 2 tidyjson-0.3.3.1/tidyjson/man/reexports.Rd |only tidyjson-0.3.3.1/tidyjson/man/tidyjson.Rd | 1 21 files changed, 797 insertions(+), 701 deletions(-)
Title: Single-Source Capture-Recapture Models
Description: Implementation of single-source capture-recapture methods for population size estimation using zero-truncated, zero-one truncated and zero-truncated one-inflated Poisson, Geometric and Negative Binomial regression as well as Zelterman's and Chao's regression. Package includes point and interval estimators for the population size with variances estimated using analytical or bootstrap method. Details can be found in: van der Heijden et all. (2003) <doi:10.1191/1471082X03st057oa>, Böhning and van der Heijden (2019) <doi:10.1214/18-AOAS1232>, Böhning et al. (2020) Capture-Recapture Methods for the Social and Medical Sciences or Böhning and Friedl (2021) <doi:10.1007/s10260-021-00556-8>.
Author: Piotr Chlebicki [aut, ctb] ,
Maciej Beresewicz [aut, cre]
Maintainer: Maciej Beresewicz <maciej.beresewicz@ue.poznan.pl>
Diff between singleRcapture versions 0.2.3 dated 2025-02-13 and 1.0.0 dated 2026-01-21
DESCRIPTION | 14 MD5 | 36 - NEWS.md | 293 +++++----- R/documentationFiles.R | 8 R/oiztgeom.R | 275 +++------ R/oiztnegbin.R | 669 +++++++++++----------- R/oiztpoisson.R | 272 ++++----- R/ztoigeom.R | 275 +++++---- R/ztoinegbin.R | 669 ++++++++++------------ R/ztoipoisson.R | 272 ++++----- README.md | 22 build/singleRcapture.pdf |binary build/stage23.rdb |binary inst/CITATION |only inst/doc/singleRcapture.Rmd | 207 +++---- inst/doc/singleRcapture.html | 1024 +++++++++++++++++------------------ inst/tinytest/test_inflated_hurdle.R | 124 ++-- man/figures/logo.png |only man/singleRmodels.Rd | 8 vignettes/singleRcapture.Rmd | 207 +++---- 20 files changed, 2203 insertions(+), 2172 deletions(-)
More information about singleRcapture at CRAN
Permanent link
Title: Modules for 'ShinyItemAnalysis'
Description: Package including additional modules for interactive
'ShinyItemAnalysis' application for the psychometric analysis of
educational tests, psychological assessments, health-related and other
types of multi-item measurements, or ratings from multiple raters.
Author: Patricia Martinkova [aut, cre] ,
Jan Netik [aut] ,
Adela Hladka [aut]
Maintainer: Patricia Martinkova <martinkova@cs.cas.cz>
Diff between SIAmodules versions 0.1.2 dated 2025-03-28 and 0.1.3 dated 2026-01-21
DESCRIPTION | 29 +- MD5 | 26 +- NAMESPACE | 2 NEWS.md | 13 + R/SIAmodules-package.R | 1 R/read_me.R | 6 R/sm_cat.R | 535 ++++++++++++++++++++++++++++++---------------- R/sm_dif_c.R | 14 - R/sm_irr.R | 28 +- README.md | 4 inst/CITATION |only inst/sc/restr_range.R | 4 man/SIAmodules-package.Rd | 2 man/figures/logo.svg |only man/sm_cat_internal.Rd | 8 15 files changed, 426 insertions(+), 246 deletions(-)
Title: Run the 'Open-WBO' MaxSAT Solver
Description: Provides a wrapper for running the bundled 'Open-WBO' Maximum Satisfiability
(MaxSAT) solver (<https://github.com/sat-group/open-wbo>).
Users can pass command-line arguments to the solver and capture its output
as a character string or file.
Author: Matthias Ollech [aut, cre],
Ruben Martins, Vasco Manquinho, Ines Lynce [cph]
Maintainer: Matthias Ollech <ollech@gmx.com>
Diff between Rwbo versions 0.1.1 dated 2026-01-16 and 0.1.2 dated 2026-01-21
Rwbo-0.1.1/Rwbo/src/open_wbo/Makefile.in |only Rwbo-0.1.1/Rwbo/src/open_wbo/configure |only Rwbo-0.1.2/Rwbo/DESCRIPTION | 6 +- Rwbo-0.1.2/Rwbo/LICENCE.note | 8 +-- Rwbo-0.1.2/Rwbo/MD5 | 23 ++++------ Rwbo-0.1.2/Rwbo/NEWS.md | 6 ++ Rwbo-0.1.2/Rwbo/src/Makevars | 13 +++-- Rwbo-0.1.2/Rwbo/src/Makevars.win | 13 +---- Rwbo-0.1.2/Rwbo/src/open_wbo/Main.cc | 2 Rwbo-0.1.2/Rwbo/src/open_wbo/Makefile |only Rwbo-0.1.2/Rwbo/src/open_wbo/MaxSAT_Partition.h | 8 --- Rwbo-0.1.2/Rwbo/src/open_wbo/solvers/glucose4.1/parallel/Main.cc | 2 Rwbo-0.1.2/Rwbo/src/open_wbo/solvers/glucose4.1/simp/Main.cc | 2 Rwbo-0.1.2/Rwbo/src/open_wbo/solvers/glucose4.1/utils/System.h | 3 - 14 files changed, 40 insertions(+), 46 deletions(-)
Title: 'shiny' Applications for Statistical and Psychometric Analysis
Description: Toolbox with 'shiny' applications for widely used psychometric
methods. Those methods include following analysis: Item analysis, item response theory calibration, principal component analysis,
confirmatory factor analysis - structural equation modeling, generating simulated data.
References:
Chalmers (2012, <doi:10.18637/jss.v048.i06>);
Revelle (2022, <https://CRAN.R-project.org/package=psych Version = 2.2.9.>);
Rosseel (2012, <doi:10.18637/jss.v048.i02>);
Magis & Raiche (2012, <doi:10.18637/jss.v048.i08>);
Magis & Barrada (2017, <doi:10.18637/jss.v076.c01>).
Author: Celal Deha Dogan [aut] ,
Eren Can Aybek [aut, cre] ,
Sumeyra Soysal [ctb]
Maintainer: Eren Can Aybek <erencan@aybek.net>
This is a re-admission after prior archival of version 0.4 dated 2023-09-24
Diff between RSP versions 0.4 dated 2023-09-24 and 0.5 dated 2026-01-21
DESCRIPTION | 17 +++++++------ MD5 | 30 ++++++++++++------------ R/04-cfa.R | 22 +++++++++-------- R/05-dataSim.R | 6 ++-- R/07-internal.R | 2 - build/vignette.rds |binary inst/doc/INTRO_RSP.R | 42 +++++++++++++++++----------------- inst/doc/INTRO_RSP.html | 1 tests/testthat/test-01-itemAnalysis.R | 5 ++-- tests/testthat/test-02-irt.R | 5 ++-- tests/testthat/test-03-pca.R | 5 ++-- tests/testthat/test-04-cfa.R | 5 ++-- tests/testthat/test-05-dataSim.R | 5 ++-- tests/testthat/test-06-fa.R | 5 ++-- tests/testthat/test-07-internal.R | 5 ++-- tests/testthat/test-zzz.R | 11 +++++++- 16 files changed, 92 insertions(+), 74 deletions(-)
Title: Regression Models and Utilities for Repeated Measures and Panel
Data
Description: Provides an object type and associated tools for storing and
wrangling panel data. Implements several methods for creating regression
models that take advantage of the unique aspects of
panel data. Among other capabilities, automates the "within-between"
(also known as "between-within" and "hybrid") panel regression specification
that combines the desirable aspects of both fixed effects and random effects
econometric models and fits them as multilevel models
(Allison, 2009 <doi:10.4135/9781412993869.d33>;
Bell & Jones, 2015 <doi:10.1017/psrm.2014.7>). These models can also be
estimated via generalized estimating equations
(GEE; McNeish, 2019 <doi:10.1080/00273171.2019.1602504>) and Bayesian
estimation is (optionally) supported via 'Stan'.
Supports estimation of asymmetric effects models via first differences
(Allison, 2019 <doi:10.1177/2378023119826441>) as well as a generalized
linear model extension thereof using GEE.
Author: Jacob A. Long [aut, cre]
Maintainer: Jacob A. Long <jacob.long@sc.edu>
This is a re-admission after prior archival of version 0.7.8 dated 2023-08-22
Diff between panelr versions 0.7.8 dated 2023-08-22 and 1.0.0 dated 2026-01-21
DESCRIPTION | 25 MD5 | 101 +- NAMESPACE | 42 NEWS.md | 63 + R/asym_gee.R | 2 R/balance_panel.R |only R/basis_utils.R |only R/model_frame.R | 168 +-- R/panel_data.R | 95 + R/reconstruct.R | 57 - R/reshapers.R | 166 +-- R/utils.R | 464 +++++++-- R/vctrs-panel_data.R |only R/wb_data_prep.R | 216 +++- R/wb_formula.R |only R/wb_gee.R | 10 R/wb_lmer.R | 44 R/wb_stan.R | 39 R/wb_utils.R | 1775 +++++++++++++++++++----------------- R/zzz.R |only README.md | 526 +++++----- build/vignette.rds |binary inst/doc/reshape.html | 136 +- inst/doc/wbm.R | 9 inst/doc/wbm.Rmd | 31 inst/doc/wbm.html | 236 ++-- man/InteractionConfig.Rd |only man/WBFormula.Rd |only man/WBFormula_from_parser.Rd |only man/as_parser_list.Rd |only man/balance_panel.Rd |only man/basis_function_registry.Rd |only man/basis_utils.Rd |only man/bt.Rd |only man/bt_if_needed.Rd |only man/build_panel_data.Rd |only man/detect_matrix_terms.Rd |only man/evaluate_basis_term.Rd |only man/expand_basis_columns.Rd |only man/expand_matrix_terms_in_data.Rd |only man/extract_basis_variable.Rd |only man/extract_fn_name.Rd |only man/extract_ranef_vars.Rd |only man/generate_basis_colnames.Rd |only man/get_interactions.WBFormula.Rd |only man/get_meanvar.Rd |only man/has_gaps.Rd |only man/has_interactions.Rd |only man/is_known_basis_fn.Rd |only man/is_matrix_term.Rd |only man/is_panel_sorted.Rd |only man/is_varying_term.Rd |only man/is_within_model.Rd |only man/make_interaction_config.Rd |only man/nobs.wbm.Rd | 4 man/panel_data-vctrs.Rd |only man/predict.wbgee.Rd | 6 man/predict.wbm.Rd | 33 man/print.WBFormula.Rd |only man/process_matrix_term.Rd |only man/reconstruct_basis_call.Rd |only man/scan_gaps.Rd |only man/should_demean_ints.Rd |only man/un_bt.Rd |only man/update_pf_for_matrix_terms.Rd |only man/use_old_style_ints.Rd |only man/wbm.Rd | 17 tests/testthat/test-balance_panel.R |only tests/testthat/test-utils.R | 16 tests/testthat/test-vctrs.R |only tests/testthat/test_splines.R |only tests/testthat/test_wbgee.R | 25 tests/testthat/test_wbm.R | 116 ++ vignettes/wbm.Rmd | 31 74 files changed, 2725 insertions(+), 1728 deletions(-)
Title: Bayesian Package for Network Changepoint Analysis
Description: Network changepoint analysis for undirected network data. The package implements a hidden Markov network change point model (Park and Sohn (2020)). Functions for break number detection using the approximate marginal likelihood and WAIC are also provided. This version includes performance optimizations with vectorized MCMC operations and modern ggplot2-based visualizations with colorblind-friendly palettes.
Author: Jong Hee Park [aut, cre],
Yunkyu Sohn [aut]
Maintainer: Jong Hee Park <jongheepark@snu.ac.kr>
Diff between NetworkChange versions 0.8 dated 2022-03-04 and 1.0.0 dated 2026-01-21
DESCRIPTION | 37 +++--- MD5 | 73 ++++++------ NAMESPACE | 27 +++- R/NetworkChange-package.r | 9 - R/NetworkChange.r | 20 +-- R/NetworkChangeRobust.r | 2 R/NetworkStatic.R | 2 R/ULUstateSample.r | 223 ++++++++++++++++++------------------- R/Utils.R | 135 +++++++++++++++++++++- R/drawpostanalysis.R | 52 ++++---- R/globals.R |only R/multiplot.R | 43 +++---- R/plotContour.R | 12 + R/plotU.R | 73 +++++------- R/plotV.R | 69 ++++++----- R/plotnetarray.R | 39 +++--- R/updateU.R | 40 ++++-- R/updateUm.R | 44 +++++-- R/updateV.R | 53 ++++++-- R/updateVm.R | 62 ++++++---- man/NetworkChange.Rd | 2 man/NetworkChangeRobust.Rd | 2 man/NetworkStatic.Rd | 2 man/ULUstateSample.Rd | 3 man/ULUstateSample.mpfr.Rd | 3 man/combineVm.Rd |only man/drawPostAnalysis.Rd | 3 man/figures/package-overview.png |only man/multiplot.Rd | 10 - man/plotContour.Rd | 7 - man/plotU.Rd | 3 man/plotV.Rd | 11 + man/plotnetarray.Rd | 4 man/scale_color_networkchange.Rd |only man/scale_color_networkchange_c.Rd |only man/scale_fill_networkchange.Rd |only man/theme_networkchange.Rd |only man/updateU.Rd | 3 man/updateUm.Rd | 3 man/updateV.Rd | 3 man/updateVm.Rd | 3 41 files changed, 669 insertions(+), 408 deletions(-)
Title: Measuring Ecosystem Multi-Functionality and Its Decomposition
Description: Provide simple functions to (i) compute a class of
multi-functionality measures for a single ecosystem for given
function weights, (ii) decompose gamma multi-functionality
for pairs of ecosystems and K ecosystems (K can be greater than 2)
into a within-ecosystem component (alpha multi-functionality)
and an among-ecosystem component (beta multi-functionality).
In each case, the correlation between functions can be corrected for.
Based on biodiversity and ecosystem function data, this software
also facilitates graphics for assessing biodiversity-ecosystem
functioning relationships across scales.
Author: Anne Chao [aut, cre],
Chun-Yu Liu [ctb],
KaiHsiang Hu [ctb]
Maintainer: Anne Chao <chao@stat.nthu.edu.tw>
Diff between MF.beta4 versions 1.1.1 dated 2024-12-08 and 1.1.2 dated 2026-01-21
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS | 4 ++++ R/Mainfun.R | 9 +++++---- build/vignette.rds |binary inst/doc/Introduction.pdf |binary 6 files changed, 17 insertions(+), 12 deletions(-)
Title: Material Management
Description: A set of functions, classes and methods for performing ABC and ABC/XYZ analyses, identifying overperforming, underperforming and constantly performing items, and plotting, analyzing as well as predicting the temporal development of items.
Author: Leon Binder [cre, aut],
Bernhard Bauer [aut],
Michael Scholz [aut]
Maintainer: Leon Binder <leon.binder@th-deg.de>
Diff between matman versions 1.1.3 dated 2021-12-13 and 1.1.4 dated 2026-01-21
DESCRIPTION | 8 - MD5 | 42 ++++---- NAMESPACE | 1 NEWS.md | 3 R/ABCXYZanalysis.R | 2 man/ABCXYZData-class.Rd | 84 ++++++++--------- man/Amount.Rd | 60 ++++++------ man/Forecast-class.Rd | 92 +++++++++---------- man/Stocks.Rd | 52 +++++----- man/computeOverperformer.Rd | 138 ++++++++++++++-------------- man/computeUnderperformer.Rd | 138 ++++++++++++++-------------- man/detectTimeVariations.Rd | 114 +++++++++++------------ man/expandData.Rd | 130 +++++++++++++------------- man/matmanDemo.Rd | 42 ++++---- man/plot-ABCXYZData-ANY-method.Rd | 136 ++++++++++++++-------------- man/plotValueSeries.Rd | 134 +++++++++++++-------------- man/predictValue.Rd | 184 +++++++++++++++++++------------------- man/show-ABCXYZData-method.Rd | 74 +++++++-------- man/show-Forecast-method.Rd | 74 +++++++-------- man/summary-ABCXYZData-method.Rd | 100 ++++++++++---------- man/summary-Forecast-method.Rd | 78 ++++++++-------- man/summary.Rd | 80 ++++++++-------- 22 files changed, 885 insertions(+), 881 deletions(-)
Title: Post-Estimation Utilities for 'lavaan' Fitted Models
Description: Companion toolbox for structural equation models fitted with 'lavaan'. Provides post-estimation diagnostics and graphics that operate directly on a fitted object using its estimates and covariance, and refits auxiliary models when needed. The package relies on 'lavaan' (Rosseel, 2012) <doi:10.18637/jss.v048.i02>.
Author: Giuseppe Corbelli [aut, cre]
Maintainer: Giuseppe Corbelli <giuseppe.corbelli@uninettunouniversity.net>
Diff between lavinteract versions 0.3.4 dated 2025-11-13 and 0.3.5 dated 2026-01-21
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 7 ++++++- inst/CITATION | 4 ++-- 4 files changed, 14 insertions(+), 9 deletions(-)
Title: Create Hexagon Sticker in R
Description: Helper functions for creating reproducible hexagon sticker purely in R.
Author: Guangchuang Yu [aut, cre],
Laurent Gatto [ctb],
Johannes Rainer [ctb],
Sebastian Gibb [ctb],
Robert Corty [ctb],
Thomas Neitmann [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between hexSticker versions 0.5.0 dated 2025-09-18 and 0.5.1 dated 2026-01-21
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 5 +++++ R/sticker.R | 6 +++--- 4 files changed, 14 insertions(+), 9 deletions(-)
Title: Handle Air Quality Data from the European Environment Agency
Data Portal
Description: This software downloads and manages air quality data from the European Environmental Agency (EEA) dataflow (<https://www.eea.europa.eu/data-and-maps/data/aqereporting-9>).
See the web page <https://eeadmz1-downloads-webapp.azurewebsites.net/> for details on the EEA's Air Quality Download Service.
The package allows dynamically mapping the stations, summarising and time aggregating the measurements and building spatial interpolation maps.
See the web page <https://www.eea.europa.eu/en> for further information on EEA activities and history.
Further details, as well as, an extended vignette of the main functions included in the package, are available at the GitHub web page dedicated to the project.
Author: Paolo Maranzano [aut, cre, cph] ,
Riccardo Borgoni [aut, cph] ,
Samir Doghmi [aut, cph],
Agostino Tassan Mazzocco [aut, cph]
Maintainer: Paolo Maranzano <pmaranzano.ricercastatistica@gmail.com>
This is a re-admission after prior archival of version 1.0.1 dated 2025-03-20
Diff between EEAaq versions 1.0.1 dated 2025-03-20 and 1.0.2 dated 2026-01-21
DESCRIPTION | 26 ++-- MD5 | 55 ++++---- R/EEAaq_export.R | 8 - R/EEAaq_get_data.R | 277 ++++++++++++++++---------------------------- R/EEAaq_get_stations.R | 3 R/EEAaq_idw_map.R | 45 +++---- R/EEAaq_import.R | 5 R/EEAaq_map_stations.R | 135 +++++++-------------- R/EEAaq_summary.R | 17 +- R/EEAaq_time_aggregate.R | 14 -- R/data.R | 1 R/get_LAU.R | 2 R/get_NUTS.R | 1 R/get_pollutant.R | 6 R/get_stations.R | 56 ++++---- R/globals.R | 13 +- R/handle_dates.R | 13 +- R/is_EEAaq_df.R | 5 build |only inst |only man/EEAaq_export.Rd | 7 - man/EEAaq_get_data.Rd | 5 man/EEAaq_idw_map.Rd | 29 +--- man/EEAaq_import.Rd | 5 man/EEAaq_map_stations.Rd | 29 ++-- man/EEAaq_summary.Rd | 17 -- man/EEAaq_time_aggregate.Rd | 14 -- man/is_EEAaq_df.Rd | 5 vignettes |only 29 files changed, 340 insertions(+), 453 deletions(-)
Title: Distributional Random Forests
Description: An implementation of distributional random forests as introduced in Cevid & Michel & Naf & Meinshausen & Buhlmann (2022) <doi:10.48550/arXiv.2005.14458>.
Author: Jeffrey Naf [cre],
Loris Michel [aut],
Domagoj Cevid [aut]
Maintainer: Jeffrey Naf <jeffrey.naf@unige.ch>
Diff between drf versions 1.2.0 dated 2025-12-08 and 1.3.0 dated 2026-01-21
DESCRIPTION | 8 MD5 | 24 +- R/RcppExports.R | 4 R/analysis_tools.R | 58 ++++- R/drf.R | 19 + R/predict.R | 176 +++++++++++------- man/drf.Rd | 20 +- man/get_sample_weights.Rd | 31 ++- man/predict.drf.Rd | 105 ++++++++++ src/AnalysisToolsBindings.cpp | 108 ++++++++++- src/RcppExports.cpp | 17 + src/src/prediction/collector/SampleWeightComputer.cpp | 13 + src/src/prediction/collector/SampleWeightComputer.h | 4 13 files changed, 477 insertions(+), 110 deletions(-)
Title: Supplements the 'gtsummary' Package for Pharmaceutical Reporting
Description: Tables summarizing clinical trial results are often complex
and require detailed tailoring prior to submission to a health
authority. The 'crane' package supplements the functionality of the
'gtsummary' package for creating these often highly bespoke tables in
the pharmaceutical industry.
Author: Daniel D. Sjoberg [aut] ,
Emily de la Rua [aut] ,
Davide Garolini [aut] ,
Abinaya Yogasekaram [ctb] ,
Joe Zhu [cre] ,
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between crane versions 0.3.0 dated 2025-12-06 and 0.3.1 dated 2026-01-21
DESCRIPTION | 47 ++++--- MD5 | 40 ++++-- NAMESPACE | 138 +++++++++++++--------- NEWS.md | 12 + R/annotate_gg_km.R |only R/as_ggplot.R |only R/crane-package.R | 49 ++++--- R/forest.R |only R/get_cox_pairwise_df.R |only R/gg_km.R |only R/gg_km_utils.R |only R/tbl_null_report.R | 61 ++++----- R/tbl_roche_subgroups.R |only README.md | 116 +++++++++--------- inst/WORDLIST | 57 +++++---- man/annotate_gg_km.Rd |only man/as_ggplot.Rd |only man/crane-package.Rd | 9 - man/df2gg.Rd |only man/extract_plot_data.Rd |only man/g_forest.Rd |only man/get_cox_pairwise_df.Rd |only man/gg_forest_plot.Rd |only man/gg_km.Rd |only man/h_tbl_median_surv.Rd |only man/h_xticks.Rd |only man/tbl_roche_subgroups.Rd |only tests/testthat/test-add_blank_rows.R | 210 +++++++++++++++++----------------- tests/testthat/test-forestplot.R |only tests/testthat/test-gg_km.R |only tests/testthat/test-tbl_null_report.R | 30 ++-- 31 files changed, 427 insertions(+), 342 deletions(-)
Title: Optimal Pairing and Matching via Linear Assignment
Description: Solves optimal pairing and matching problems using linear assignment
algorithms. Provides implementations of the Hungarian method (Kuhn 1955)
<doi:10.1002/nav.3800020109>, Jonker-Volgenant shortest path algorithm
(Jonker and Volgenant 1987) <doi:10.1007/BF02278710>, Auction algorithm
(Bertsekas 1988) <doi:10.1007/BF02186476>, cost-scaling
(Goldberg and Kennedy 1995) <doi:10.1007/BF01585996>, scaling algorithms
(Gabow and Tarjan 1989) <doi:10.1137/0218069>, push-relabel (Goldberg and
Tarjan 1988) <doi:10.1145/48014.61051>, and Sinkhorn entropy-regularized
transport (Cuturi 2013) <doi:10.48550/arxiv.1306.0895>. Designed for
matching plots, sites, samples, or any pairwise optimization problem.
Supports rectangular matrices, forbidden assignments, data frame inputs,
batch solving, k-best solutions, and pixel-level image morphing for
visualization. Includes automatic preprocessing with variable health
checks, multiple scaling methods (standardized, [...truncated...]
Author: Gilles Colling [aut, cre, cph]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between couplr versions 1.0.6 dated 2026-01-20 and 1.0.8 dated 2026-01-21
DESCRIPTION | 6 MD5 | 54 - NEWS.md | 14 R/matching_diagnostics.R | 6 R/matching_parallel.R | 12 R/matching_preprocessing.R | 4 inst/CITATION | 2 inst/doc/algorithms.Rmd | 49 + inst/doc/algorithms.html | 227 ++++---- inst/doc/comparison.R | 4 inst/doc/comparison.Rmd | 55 + inst/doc/comparison.html | 207 ++++--- inst/doc/getting-started.Rmd | 883 ++++++++++++++++---------------- inst/doc/getting-started.html | 44 - inst/doc/matching-workflows.R | 6 inst/doc/matching-workflows.Rmd | 119 ++++ inst/doc/matching-workflows.html | 413 ++++++++------ inst/doc/pixel-morphing.Rmd | 56 ++ inst/doc/pixel-morphing.html | 304 +++++------ inst/doc/troubleshooting.Rmd | 8 inst/doc/troubleshooting.html | 41 - src/gabow_tarjan/utils_gabow_tarjan.cpp | 11 vignettes/algorithms.Rmd | 49 + vignettes/comparison.Rmd | 55 + vignettes/getting-started.Rmd | 883 ++++++++++++++++---------------- vignettes/matching-workflows.Rmd | 119 ++++ vignettes/pixel-morphing.Rmd | 56 ++ vignettes/troubleshooting.Rmd | 8 28 files changed, 2174 insertions(+), 1521 deletions(-)
Title: Functions to Fit Cell Volume Distributions and Thereby Estimate
Cell Growth Rates and Division Times
Description: Implements a methodology for using cell volume
distributions to estimate cell growth rates and division times
that is described in the paper, "Cell Volume Distributions
Reveal Cell Growth Rates and Division Times", by Michael
Halter, John T. Elliott, Joseph B. Hubbard, Alessandro Tona
and Anne L. Plant, which appeared in the Journal of Theoretical
Biology. In order to reproduce the analysis used to obtain
Table 1 in the paper, execute the command
"example(fitVolDist)".
Author: Katharine M. Mullen [aut, cre],
Michael Halter [aut],
John Lu [aut],
Nathan Dodder [aut]
Maintainer: Katharine M. Mullen <katharine.mullen@stat.ucla.edu>
Diff between cellVolumeDist versions 1.4 dated 2022-04-24 and 1.5 dated 2026-01-21
DESCRIPTION | 36 ++++++++++++++++++++++-------- MD5 | 6 ++--- man/A10_vSMC_volume_data.Rd | 52 ++++++++++++++++++++++---------------------- man/NIH3T3_volume_data.Rd | 18 +++++++-------- 4 files changed, 64 insertions(+), 48 deletions(-)
More information about cellVolumeDist at CRAN
Permanent link
Title: Random Generation Functionality for the 'spatstat' Family
Description: Functionality for random generation of spatial data in the 'spatstat' family of packages.
Generates random spatial patterns of points according to many simple rules (complete spatial randomness,
Poisson, binomial, random grid, systematic, cell), randomised alteration of patterns
(thinning, random shift, jittering), simulated realisations of random point processes including
simple sequential inhibition, Matern inhibition models, Neyman-Scott cluster processes
(using direct, Brix-Kendall, or hybrid algorithms),
log-Gaussian Cox processes, product shot noise cluster processes
and Gibbs point processes (using Metropolis-Hastings birth-death-shift algorithm,
alternating Gibbs sampler, or coupling-from-the-past perfect simulation).
Also generates random spatial patterns of line segments,
random tessellations, and random images (random noise, random mosaics).
Excludes random generation on a linear network,
which is covered by the separate package 'spatstat.linnet'.
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Tilman Davies [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb, cph],
David Bryant [ctb, cph],
Ya-Mei Chang [ctb, cph],
Ute Hahn [ctb],
Abdollah Jalilian [ctb],
Dominic Sc [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.random versions 3.4-3 dated 2025-11-21 and 3.4-4 dated 2026-01-21
spatstat.random-3.4-3/spatstat.random/R/pkgRandomFields.R |only spatstat.random-3.4-4/spatstat.random/DESCRIPTION | 18 +++---- spatstat.random-3.4-4/spatstat.random/MD5 | 24 +++++----- spatstat.random-3.4-4/spatstat.random/NAMESPACE | 3 - spatstat.random-3.4-4/spatstat.random/NEWS | 12 +++++ spatstat.random-3.4-4/spatstat.random/R/kraever.R |only spatstat.random-3.4-4/spatstat.random/R/randomseg.R | 4 + spatstat.random-3.4-4/spatstat.random/inst/doc/packagesizes.txt | 1 spatstat.random-3.4-4/spatstat.random/inst/info/packagesizes.txt | 1 spatstat.random-3.4-4/spatstat.random/man/rMaternI.Rd | 8 ++- spatstat.random-3.4-4/spatstat.random/man/rMaternII.Rd | 9 ++- spatstat.random-3.4-4/spatstat.random/man/rjitter.psp.Rd | 3 - spatstat.random-3.4-4/spatstat.random/man/spatstat.random-internal.Rd | 8 --- spatstat.random-3.4-4/spatstat.random/man/spatstat.random-package.Rd | 8 ++- 14 files changed, 60 insertions(+), 39 deletions(-)
More information about spatstat.random at CRAN
Permanent link
Title: Embed 'SWI'-'Prolog'
Description: Interface to 'SWI'-'Prolog', <https://www.swi-prolog.org/>. This package is normally not loaded directly, please refer to package 'rolog' instead. The purpose of this package is to provide the 'Prolog' runtime on systems that do not have a software installation of 'SWI'-'Prolog'.
Author: Matthias Gondan [aut, com, cre] ,
Jan Wielemaker [ctb, cph] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
Diff between rswipl versions 10.1.1 dated 2026-01-08 and 10.1.1.1 dated 2026-01-21
rswipl-10.1.1.1/rswipl/DESCRIPTION | 8 rswipl-10.1.1.1/rswipl/MD5 | 181 ++--- rswipl-10.1.1.1/rswipl/NEWS.md | 4 rswipl-10.1.1.1/rswipl/src/swipl-devel/boot/tabling.pl | 4 rswipl-10.1.1.1/rswipl/src/swipl-devel/boot/toplevel.pl | 3 rswipl-10.1.1.1/rswipl/src/swipl-devel/library/check_installation.pl | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/library/prolog_deps.pl | 63 + rswipl-10.1.1.1/rswipl/src/swipl-devel/packages/cpp/test_cpp.cpp | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/packages/xpce/cmake/XPCESources.cmake | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/packages/xpce/man/reference/class/graphical.doc |binary rswipl-10.1.1.1/rswipl/src/swipl-devel/packages/xpce/prolog/lib/emacs/emacs.pl | 3 rswipl-10.1.1.1/rswipl/src/swipl-devel/packages/xpce/prolog/lib/emacs/fundamental_mode.pl | 3 rswipl-10.1.1.1/rswipl/src/swipl-devel/packages/xpce/prolog/lib/emacs/markdown_mode.pl |only rswipl-10.1.1.1/rswipl/src/swipl-devel/packages/xpce/prolog/lib/emacs/prolog_mode.pl | 9 rswipl-10.1.1.1/rswipl/src/swipl-devel/packages/xpce/prolog/lib/man/v_manual.pl | 9 rswipl-10.1.1.1/rswipl/src/swipl-devel/packages/xpce/prolog/lib/swi/pce_profile.pl | 8 rswipl-10.1.1.1/rswipl/src/swipl-devel/packages/xpce/src/ker/error.c | 48 - rswipl-10.1.1.1/rswipl/src/swipl-devel/packages/xpce/src/sdl/sdldraw.c | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/packages/xpce/src/txt/terminal.c | 19 rswipl-10.1.1.1/rswipl/src/swipl-devel/scripts/configure | 3 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/CMakeLists.txt | 32 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/SWI-Prolog.h | 4 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/minizip/unzip.c | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/minizip/unzip.h | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/minizip/zip.c | 16 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/minizip/zip.h | 10 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/mkvmi.c | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/os/dtoa.c | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/os/pl-file.c | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/os/pl-files.c | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/os/pl-fmt.c | 30 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/os/pl-fmt.h | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/os/pl-glob.c | 7 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/os/pl-os.c | 11 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/os/pl-stream.c | 4 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/os/pl-tai.c | 24 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-alloc.c | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-alloc.h | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-arith.c | 4 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-arith.h | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-comp.c | 328 +++++----- rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-comp.h | 14 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-cont.c | 6 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-copyterm.c | 36 - rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-copyterm.h | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-debug.c | 8 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-debug.h | 1 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-dict.c | 111 +-- rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-dict.h | 6 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-error.c | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-error.h | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-event.c | 57 - rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-event.h | 17 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-fli.c | 12 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-funct.c | 3 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-gc.c | 62 + rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-gc.h | 14 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-global.h | 4 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-gmp.c | 22 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-incl.h | 99 ++- rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-index.c | 30 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-init.c | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-prims.c | 244 +++---- rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-prims.h | 22 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-pro.c | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-proc.c | 27 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-proc.h | 4 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-prof.c | 44 - rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-prof.h | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-qlf.c | 54 - rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-read.c | 17 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-rec.c | 30 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-segstack.h | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-setup.c | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-srcfile.c | 22 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-srcfile.h | 8 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-supervisor.c | 6 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-tabling.c | 42 - rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-tabling.h | 6 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-termhash.c | 9 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-thread.c | 6 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-trace.c | 38 - rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-trie.c | 4 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-variant.c | 30 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-vmi.c | 6 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-wam.c | 45 - rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-wam.h | 4 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-write.c | 7 rswipl-10.1.1.1/rswipl/src/swipl-devel/src/pl-zip.c | 2 rswipl-10.1.1.1/rswipl/src/swipl-devel/tests/core/test_format.pl | 26 rswipl-10.1.1/rswipl/inst/swipl |only rswipl-10.1.1/rswipl/src/swipl-devel/packages/clib/process.c.rej |only rswipl-10.1.1/rswipl/src/swipl-devel/packages/cpp/test_cpp.cpp.rej |only rswipl-10.1.1/rswipl/src/swipl-devel/packages/cpp/test_cpp.pl.rej |only 94 files changed, 1115 insertions(+), 969 deletions(-)
Title: Plot Raster Map Tiles from Open Street Map and Other Sources
Description: Download and plot Open Street Map <https://www.openstreetmap.org/>,
Bing Maps <https://www.bing.com/maps> and other tiled map sources. Use to create
basemaps quickly and add hillshade to vector-based maps.
Author: Dewey Dunnington [aut, cre] ,
Timothee Giraud [ctb]
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between rosm versions 0.3.0 dated 2023-08-27 and 0.3.1 dated 2026-01-21
DESCRIPTION | 11 ++++++----- MD5 | 10 +++++----- NEWS.md | 7 +++++++ R/url.R | 2 +- man/osm_url_spec.Rd | 2 +- tests/testthat/test-deprecated.R | 8 +++++++- 6 files changed, 27 insertions(+), 13 deletions(-)
Title: An Interface to the Nexus Class Library
Description: An interface to the Nexus Class Library which allows parsing
of NEXUS, Newick and other phylogenetic tree file formats. It provides
elements of the file that can be used to build phylogenetic objects
such as ape's 'phylo' or phylobase's 'phylo4(d)'. This functionality
is demonstrated with 'read_newick_phylo()' and 'read_nexus_phylo()'.
Author: Francois Michonneau [aut, cre] ,
Ben Bolker [aut] ,
Mark Holder [aut] ,
Paul Lewis [aut] ,
Brian O'Meara [aut]
Maintainer: Francois Michonneau <francois.michonneau@gmail.com>
Diff between rncl versions 0.8.8 dated 2025-12-08 and 0.8.9 dated 2026-01-21
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ README.md | 17 +---------------- build/partial.rdb |binary src/ncl/nxscharactersblock.h | 13 +++++++------ src/nxscharactersblock.cpp | 23 +++++++++++------------ 7 files changed, 32 insertions(+), 43 deletions(-)
Title: Read 'Bibtex' Files and Convert Between Bibliography Formats
Description: Read and write 'Bibtex' files. Convert between bibliography
formats, including 'Bibtex', 'Biblatex', 'PubMed', 'Endnote', and
'Bibentry'. Includes a port of the 'bibutils' utilities by Chris
Putnam <https://sourceforge.net/projects/bibutils/>. Supports all
bibliography formats and character encodings implemented in
'bibutils'.
Author: Georgi N. Boshnakov [aut, cre] ),
Chris Putman [aut] ,
Richard Mathar [ctb] ,
Johannes Wilm [ctb] ,
R Core Team [ctb]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between rbibutils versions 2.4 dated 2025-11-07 and 2.4.1 dated 2026-01-21
rbibutils-2.4.1/rbibutils/DESCRIPTION | 19 ++-- rbibutils-2.4.1/rbibutils/MD5 | 47 +++++----- rbibutils-2.4.1/rbibutils/NAMESPACE | 5 - rbibutils-2.4.1/rbibutils/NEWS.md | 17 +++ rbibutils-2.4.1/rbibutils/R/bib.R | 44 ++++----- rbibutils-2.4.1/rbibutils/R/bibentry.R | 47 +++++++++- rbibutils-2.4.1/rbibutils/build/partial.rdb |binary rbibutils-2.4.1/rbibutils/inst/REFERENCES.bib | 8 + rbibutils-2.4.1/rbibutils/inst/doc/rbibutils.Rnw | 2 rbibutils-2.4.1/rbibutils/inst/doc/rbibutils.pdf |binary rbibutils-2.4.1/rbibutils/man/bibstyle_JSSextra.Rd |only rbibutils-2.4.1/rbibutils/src/name.c | 28 +++++ rbibutils-2.4.1/rbibutils/tests/testthat/test-https.R | 6 - rbibutils-2.4.1/rbibutils/tests/testthat/xampl2biblatex.rds |binary rbibutils-2.4.1/rbibutils/tests/testthat/xampl2biblatex.rds_sav4 |only rbibutils-2.4.1/rbibutils/tests/testthat/xampl_1.rds |binary rbibutils-2.4.1/rbibutils/tests/testthat/xampl_1.rds_sav4 |only rbibutils-2.4.1/rbibutils/tests/testthat/xampl_bbl2bib.rds |binary rbibutils-2.4.1/rbibutils/tests/testthat/xampl_bbl2bib.rds_sav4 |only rbibutils-2.4.1/rbibutils/tests/testthat/xampl_bib2ads.rds |binary rbibutils-2.4.1/rbibutils/tests/testthat/xampl_bib2ads.rds_sav4 |only rbibutils-2.4.1/rbibutils/tests/testthat/xampl_bib2end.rds |binary rbibutils-2.4.1/rbibutils/tests/testthat/xampl_bib2end.rds_sav4 |only rbibutils-2.4.1/rbibutils/tests/testthat/xampl_bib2isi.rds |binary rbibutils-2.4.1/rbibutils/tests/testthat/xampl_bib2isi.rds_sav4 |only rbibutils-2.4.1/rbibutils/tests/testthat/xampl_isi2bib.rds |binary rbibutils-2.4.1/rbibutils/tests/testthat/xampl_isi2bib.rds_sav4 |only rbibutils-2.4.1/rbibutils/vignettes/rbibutils.Rnw | 2 rbibutils-2.4/rbibutils/man/register_JSSextra.Rd |only 29 files changed, 162 insertions(+), 63 deletions(-)
Title: Functions to Make Surveys Processing Easier
Description: Set of functions to make the processing and analysis of
surveys easier : interactive shiny apps and addins for data recoding,
contingency tables, dataset metadata handling, and several convenience
functions.
Author: Julien Barnier [aut, cre],
Francois Briatte [aut],
Joseph Larmarange [aut]
Maintainer: Julien Barnier <julien.barnier@cnrs.fr>
Diff between questionr versions 0.8.1 dated 2025-06-10 and 0.8.2 dated 2026-01-21
DESCRIPTION | 6 - MD5 | 10 +-- NEWS.md | 4 + build/vignette.rds |binary inst/doc/recoding_addins.html | 4 - tests/testthat/test_tables.R | 127 +++++++++++++++++++++++++++++++----------- 6 files changed, 110 insertions(+), 41 deletions(-)
Title: Identify Characteristics of Patients in the OMOP Common Data
Model
Description: Identify the characteristics of patients in data mapped to the
Observational Medical Outcomes Partnership (OMOP) common data model.
Author: Marti Catala [aut, cre] ,
Yuchen Guo [aut] ,
Mike Du [aut] ,
Kim Lopez-Guell [aut] ,
Edward Burn [aut] ,
Nuria Mercade-Besora [aut] ,
Xintong Li [ctb] ,
Xihang Chen [ctb]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between PatientProfiles versions 1.4.4 dated 2025-10-29 and 1.4.5 dated 2026-01-21
DESCRIPTION | 8 MD5 | 40 +- NEWS.md | 13 R/addDemographics.R | 3 R/addDemographicsQuery.R | 3 R/checks.R | 120 ++++++- R/formats.R | 16 - R/summariseResult.R | 518 +++++++++++++++++----------------- R/sysdata.rda |binary inst/doc/cohort-intersect.html | 90 ++--- inst/doc/concept-intersect.html | 92 +++--- inst/doc/demographics.html | 234 +++++++-------- inst/doc/summarise.html | 244 ++++++++++------ inst/doc/table-intersect.html | 92 +++--- man/addInObservation.Rd | 3 man/addInObservationQuery.Rd | 3 man/summariseResult.Rd | 21 + man/variableTypes.Rd | 8 tests/testthat/test-checks.R | 4 tests/testthat/test-format.R | 29 - tests/testthat/test-summariseResult.R | 329 +++++++++++++++++++-- 21 files changed, 1155 insertions(+), 715 deletions(-)
More information about PatientProfiles at CRAN
Permanent link
Title: Convenient Access to NYC Open Data API Endpoints
Description: Provides a unified set of helper functions to access datasets
from the NYC Open Data platform <https://opendata.cityofnewyork.us/>.
Functions return results as tidy tibbles and support optional filtering,
sorting, and row limits via the Socrata API. The package includes endpoints
for 311 service requests, DOB job applications, juvenile justice metrics,
school safety, environmental data, event permitting, and additional
citywide datasets.
Author: Christian Martinez [aut, cre]
Maintainer: Christian Martinez <c.martinez0@outlook.com>
Diff between nycOpenData versions 0.1.3 dated 2026-01-09 and 0.1.4 dated 2026-01-21
DESCRIPTION | 8 - MD5 | 149 ++++++++++----------- NEWS.md | 13 + R/nyc_311.R | 68 +++++++-- R/nyc_any_dataset.R | 21 +- R/nyc_borough_community_report.R | 25 +-- R/nyc_cause_of_death.R | 25 +-- R/nyc_city_record.R | 25 +-- R/nyc_civil_service_list.R | 25 +-- R/nyc_daily_attendance_2018_2019.R | 26 +-- R/nyc_detention_admissions.R | 25 +-- R/nyc_dhs_daily_report.R | 30 ++-- R/nyc_dob_job_applications.R | 25 +-- R/nyc_dob_permit_issuance.R | 25 +-- R/nyc_domestic_violence_annual_report.R | 26 +-- R/nyc_dop_Juvenile_cases.R | 25 +-- R/nyc_dop_juvenile_rearrest_rate.R | 25 +-- R/nyc_film_permits.R | 29 ++-- R/nyc_for_hire_vehicles.R | 25 +-- R/nyc_homeless_drop_in_centers.R | 25 +-- R/nyc_homeless_population_by_year.R | 25 +-- R/nyc_medallion_drivers_active.R | 32 ++-- R/nyc_medallion_drivers_authorized.R | 28 ++- R/nyc_motor_vehicle_collisions_crashes.R | 25 +-- R/nyc_museum_locations.R | 26 +-- R/nyc_nypd_hate_crimes.R | 25 +-- R/nyc_open_parking_camera_violations.R | 26 +-- R/nyc_period_attendance_reporting.R | 26 +-- R/nyc_permit_events_historic.R | 30 +--- R/nyc_pets_in_shelters.R | 25 +-- R/nyc_restaurant_inspection_results.R | 25 +-- R/nyc_runaway_and_homeless_youth_daily_census.R | 25 +-- R/nyc_school_discharge.R | 25 +-- R/nyc_school_discharge_report_2013_2015.R | 29 ++-- R/nyc_street_hail_livery_active.R | 28 ++- R/nyc_tlc_new_driver_app_status.R | 25 +-- R/nyc_tree_census_2015.R | 25 +-- R/nyc_urban_park_animal_condition.R | 24 +-- R/nyc_violent_disruptive_school_incidents.R | 25 +-- R/utils_request.R |only man/nyc_311.Rd | 19 +- man/nyc_any_dataset.Rd | 18 +- man/nyc_borough_community_report.Rd | 20 +- man/nyc_cause_of_death.Rd | 20 +- man/nyc_city_record.Rd | 20 +- man/nyc_civil_service_list.Rd | 20 +- man/nyc_daily_attendance_2018_2019.Rd | 24 ++- man/nyc_detention_admissions.Rd | 20 +- man/nyc_dhs_daily_report.Rd | 23 ++- man/nyc_dob_job_applications.Rd | 19 +- man/nyc_dob_permit_issuance.Rd | 20 +- man/nyc_domestic_violence_annual_report.Rd | 24 ++- man/nyc_dop_Juvenile_cases.Rd | 20 +- man/nyc_dop_juvenile_rearrest_rate.Rd | 24 ++- man/nyc_film_permits.Rd | 23 ++- man/nyc_for_hire_vehicles.Rd | 20 +- man/nyc_homeless_drop_in_centers.Rd | 20 +- man/nyc_homeless_population_by_year.Rd | 24 ++- man/nyc_medallion_drivers_active.Rd | 26 ++- man/nyc_medallion_drivers_authorized.Rd | 27 ++- man/nyc_motor_vehicle_collisions_crashes.Rd | 24 ++- man/nyc_museum_locations.Rd | 20 +- man/nyc_nypd_hate_crimes.Rd | 20 +- man/nyc_open_parking_camera_violations.Rd | 24 ++- man/nyc_period_attendance_reporting.Rd | 24 ++- man/nyc_permit_events_historic.Rd | 24 +-- man/nyc_pets_in_shelters.Rd | 20 +- man/nyc_restaurant_inspection_results.Rd | 24 ++- man/nyc_runaway_and_homeless_youth_daily_census.Rd | 24 ++- man/nyc_school_discharge.Rd | 20 +- man/nyc_school_discharge_report_2013_2015.Rd | 27 ++- man/nyc_street_hail_livery_active.Rd | 26 ++- man/nyc_tlc_new_driver_app_status.Rd | 24 ++- man/nyc_tree_census_2015.Rd | 20 +- man/nyc_urban_park_animal_condition.Rd | 24 ++- man/nyc_violent_disruptive_school_incidents.Rd | 24 ++- 76 files changed, 1183 insertions(+), 761 deletions(-)
Title: Multivariate (Dynamic) Generalized Additive Models
Description: Fit Bayesian Dynamic Generalized Additive Models to multivariate observations. Users can build nonlinear State-Space models that can incorporate semiparametric effects in observation and process components, using a wide range of observation families. Estimation is performed using Markov Chain Monte Carlo with Hamiltonian Monte Carlo in the software 'Stan'. References: Clark & Wells (2023) <doi:10.1111/2041-210X.13974>.
Author: Nicholas J Clark [aut, cre] ,
KANK Karunarathna [ctb] ,
Sarah Heaps [ctb] ,
Scott Pease [ctb] ,
Matthijs Hollanders [ctb]
Maintainer: Nicholas J Clark <nicholas.j.clark1214@gmail.com>
Diff between mvgam versions 1.1.593 dated 2025-09-05 and 1.1.594 dated 2026-01-21
DESCRIPTION | 8 MD5 | 252 ++-- NEWS.md | 3 R/as.data.frame.mvgam.R | 2 R/backends.R | 2080 ++++++++++++++++++------------------ R/conditional_effects.R | 2 R/dynamic.R | 334 ++--- R/ensemble.R | 464 ++++---- R/evaluate_mvgams.R | 34 R/families.R | 2 R/fevd.mvgam.R | 346 ++--- R/forecast.mvgam.R | 2 R/get_mvgam_priors.R | 2 R/gratia_methods.R | 2 R/hindcast.mvgam.R | 2 R/how_to_cite.R | 2 R/index-mvgam.R | 544 ++++----- R/irf.mvgam.R | 2 R/jsdgam.R | 12 R/lfo_cv.mvgam.R | 894 +++++++-------- R/logLik.mvgam.R | 2 R/loo.mvgam.R | 2 R/lv_correlations.R | 248 ++-- R/mcmc_plot.mvgam.R | 2 R/monotonic.R | 2 R/mvgam.R | 10 R/mvgam_diagnostics.R | 2 R/mvgam_trend_types.R | 10 R/ordinate.jsdgam.R | 666 +++++------ R/pairs.mvgam.R | 2 R/plot.mvgam.R | 696 ++++++------ R/plot_mvgam_factors.R | 316 ++--- R/plot_mvgam_fc.R | 1976 +++++++++++++++++----------------- R/plot_mvgam_resids.R | 504 ++++---- R/plot_mvgam_trend.R | 846 +++++++------- R/posterior_epred.mvgam.R | 8 R/ppc.mvgam.R | 6 R/predict.mvgam.R | 2 R/residual_cor.R | 649 +++++------ R/residuals.mvgam.R | 2 R/score.mvgam_forecast.R | 2 R/stability.R | 596 +++++----- R/stan_utils.R | 2 R/summary.mvgam.R | 8 R/tidier_methods.R | 1053 +++++++++--------- R/update.mvgam.R | 2 README.md | 24 inst/doc/data_in_mvgam.R | 81 - inst/doc/data_in_mvgam.Rmd | 872 +++++++-------- inst/doc/data_in_mvgam.html | 201 +-- inst/doc/forecast_evaluation.R | 59 - inst/doc/forecast_evaluation.html | 446 +++---- inst/doc/mvgam_overview.R | 114 - inst/doc/mvgam_overview.html | 591 +++++----- inst/doc/nmixtures.R | 58 - inst/doc/nmixtures.html | 187 +-- inst/doc/shared_states.R | 51 inst/doc/shared_states.Rmd | 2 inst/doc/shared_states.html | 265 ++-- inst/doc/time_varying_effects.R | 72 - inst/doc/time_varying_effects.Rmd | 2 inst/doc/time_varying_effects.html | 327 ++--- inst/doc/trend_formulas.R | 98 - inst/doc/trend_formulas.Rmd | 2 inst/doc/trend_formulas.html | 426 +++---- man/RW.Rd | 2 man/ZMVN.Rd | 6 man/augment.mvgam.Rd | 2 man/code.Rd | 2 man/conditional_effects.mvgam.Rd | 2 man/dynamic.Rd | 2 man/ensemble.mvgam_forecast.Rd | 2 man/evaluate_mvgams.Rd | 34 man/fevd.mvgam.Rd | 2 man/fitted.mvgam.Rd | 2 man/forecast.mvgam.Rd | 2 man/get_mvgam_priors.Rd | 2 man/gratia_mvgam_enhancements.Rd | 2 man/hindcast.mvgam.Rd | 2 man/how_to_cite.mvgam.Rd | 2 man/index-mvgam.Rd | 2 man/irf.mvgam.Rd | 2 man/jsdgam.Rd | 8 man/lfo_cv.mvgam.Rd | 2 man/logLik.mvgam.Rd | 2 man/loo.mvgam.Rd | 2 man/lv_correlations.Rd | 6 man/mcmc_plot.mvgam.Rd | 2 man/monotonic.Rd | 2 man/mvgam.Rd | 6 man/mvgam_diagnostics.Rd | 2 man/mvgam_draws.Rd | 2 man/mvgam_families.Rd | 2 man/mvgam_use_cases.Rd | 114 - man/ordinate.jsdgam.Rd | 2 man/pairs.mvgam.Rd | 2 man/piecewise_trends.Rd | 2 man/plot.mvgam.Rd | 2 man/plot_mvgam_factors.Rd | 2 man/plot_mvgam_forecasts.Rd | 2 man/plot_mvgam_resids.Rd | 2 man/plot_mvgam_trend.Rd | 2 man/posterior_epred.mvgam.Rd | 2 man/posterior_linpred.mvgam.Rd | 2 man/posterior_predict.mvgam.Rd | 2 man/pp_check.mvgam.Rd | 2 man/ppc.mvgam.Rd | 2 man/predict.mvgam.Rd | 2 man/residual_cor.jsdgam.Rd | 9 man/residuals.mvgam.Rd | 2 man/score.mvgam_forecast.Rd | 2 man/stability.mvgam.Rd | 2 man/summary.mvgam.Rd | 2 man/update.mvgam.Rd | 2 tests/testthat/test-RW.R | 964 ++++++++-------- tests/testthat/test-binomial.R | 10 tests/testthat/test-dynamic.R | 406 +++---- tests/testthat/test-gp.R | 976 ++++++++-------- tests/testthat/test-jsdgam.R | 22 tests/testthat/test-mvgam-methods.R | 2 tests/testthat/test-mvgam.R | 32 tests/testthat/test-mvgam_priors.R | 10 tests/testthat/test-offset.R | 6 vignettes/data_in_mvgam.Rmd | 872 +++++++-------- vignettes/shared_states.Rmd | 2 vignettes/time_varying_effects.Rmd | 2 vignettes/trend_formulas.Rmd | 2 127 files changed, 9979 insertions(+), 10075 deletions(-)
Title: Easily Apply Formats to Data
Description: Contains a set of functions that can be used to apply
formats to data frames or vectors. The package aims to provide
functionality similar to that of SAS® formats. Formats are assigned to
the format attribute on data frame columns. Then when the fdata()
function is called, a new data frame is created with the column data
formatted as specified. The package also contains a value() function
to create a user-defined format, similar to a SAS® user-defined format.
Author: David Bosak [aut, cre],
Chen Ling [aut]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between fmtr versions 1.7.0 dated 2025-11-26 and 1.7.1 dated 2026-01-21
DESCRIPTION | 9 +- MD5 | 26 +++--- NEWS.md | 5 + R/fapply.R | 169 +++++++++++++++++++++++++++++++++++++++-- R/fmtr.R | 22 +++++ R/timewd.R |only inst/doc/fmtr-convenience.html | 4 inst/doc/fmtr-fapply.html | 4 inst/doc/fmtr-fapply2.html | 4 inst/doc/fmtr-fcat.html | 4 inst/doc/fmtr-fdata.html | 4 inst/doc/fmtr-helpers.html | 4 man/FormattingStrings.Rd | 24 +++++ man/fapply.Rd | 84 ++++++++++++++++++++ tests/testthat/test-timewd.R |only 15 files changed, 329 insertions(+), 34 deletions(-)
Title: High Performance Container Data Types
Description: Provides high performance container data types such
as queues, stacks, deques, dicts and ordered dicts. Benchmarks
<https://randy3k.github.io/collections/articles/benchmark.html> have
shown that these containers are asymptotically more efficient than
those offered by other packages.
Author: Randy Lai [aut, cre],
Andrea Mazzoleni [cph] ,
Yann Collet [cph]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between collections versions 0.3.9 dated 2025-08-18 and 0.3.10 dated 2026-01-21
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- src/deque.c | 2 +- src/xxh.c | 36 +++++++++++++++++++++++++++++++++--- 4 files changed, 41 insertions(+), 11 deletions(-)
Title: Efficient Phylogenetics on Large Trees
Description: Efficient phylogenetic analyses on massive phylogenies comprising up to millions of tips. Functions include pruning, rerooting, calculation of most-recent common ancestors, calculating distances from the tree root and calculating pairwise distances. Calculation of phylogenetic signal and mean trait depth (trait conservatism), ancestral state reconstruction and hidden character prediction of discrete characters, simulating and fitting models of trait evolution, fitting and simulating diversification models, dating trees, comparing trees, and reading/writing trees in Newick format. Citation: Louca, Stilianos and Doebeli, Michael (2017) <doi:10.1093/bioinformatics/btx701>.
Author: Stilianos Louca [aut, cre, cph]
Maintainer: Stilianos Louca <louca.research@gmail.com>
Diff between castor versions 1.8.4 dated 2025-08-24 and 1.8.5 dated 2026-01-21
DESCRIPTION | 8 - MD5 | 42 +++--- NAMESPACE | 1 R/RcppExports.R | 8 - R/auxiliary_routines.R | 111 ++++++++++++---- R/expanded_tree_from_jplace.r | 18 ++ R/get_ancestral_nodes.R | 8 - R/get_subtree_with_tips.R | 6 R/hsp_binomial.R | 22 +-- R/hsp_mk_model.R | 29 ++-- R/hsp_naive.R |only R/plot_tree_radial.R | 251 +++++++++++++++++++++++++++++++----- R/read_fastq.R | 25 ++- man/expanded_tree_from_jplace.Rd | 25 +++ man/get_ancestral_nodes.Rd | 18 ++ man/hsp_binomial.Rd | 4 man/hsp_empirical_probabilities.Rd | 12 + man/hsp_max_parsimony.Rd | 2 man/hsp_mk_model.Rd | 3 man/hsp_naive.Rd |only man/plot_tree_radial.Rd | 111 +++++++++++----- src/RcppExports.cpp | 27 ++- src/phylogenetics_cpp_routines.cpp | 253 ++++++++++++++++++++++++++----------- 23 files changed, 729 insertions(+), 255 deletions(-)
Title: Blocked Weighted Bootstrap
Description: The blocked weighted bootstrap (BBW) is an estimation technique
for use with data from two-stage cluster sampled surveys in which either
prior weighting (e.g. population-proportional sampling or PPS as used in
Standardized Monitoring and Assessment of Relief and Transitions or SMART
surveys) or posterior weighting (e.g. as used in rapid assessment method or
RAM and simple spatial sampling method or S3M surveys) is implemented. See
Cameron et al (2008) <doi:10.1162/rest.90.3.414> for application of
bootstrap to cluster samples. See Aaron et al (2016)
<doi:10.1371/journal.pone.0163176> and Aaron et al (2016)
<doi:10.1371/journal.pone.0162462> for application of the blocked weighted
bootstrap to estimate indicators from two-stage cluster sampled surveys.
Author: Mark Myatt [aut, cph] ,
Ernest Guevarra [aut, cre, cph]
Maintainer: Ernest Guevarra <ernestgmd@gmail.com>
Diff between bbw versions 0.3.0 dated 2025-01-16 and 0.3.1 dated 2026-01-21
DESCRIPTION | 18 - MD5 | 26 - NEWS.md | 5 README.md | 88 +++-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 6 inst/WORDLIST | 4 inst/doc/bbw-estimation.html | 643 +++++++++++++++++++++++++------------------ inst/doc/bbw-parallel.html | 531 +++++++++++++++++------------------ inst/doc/bbw.Rmd | 4 inst/doc/bbw.html | 114 +++++-- man/bbw.Rd | 2 vignettes/bbw.Rmd | 4 14 files changed, 817 insertions(+), 628 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') Driver Manager
Description: Provides a developer-facing interface to 'Arrow' Database
Connectivity ('ADBC') for the purposes of driver development, driver
testing, and building high-level database interfaces for users. 'ADBC'
<https://arrow.apache.org/adbc/> is an API standard for database access
libraries that uses 'Arrow' for result sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcdrivermanager versions 0.21.0 dated 2025-11-20 and 0.22.0 dated 2026-01-21
DESCRIPTION | 6 MD5 | 25 +- R/helpers.R | 12 + man/read_adbc.Rd | 8 src/c/driver/postgresql/connection.cc | 35 +++ src/c/driver/postgresql/result_helper.cc | 10 - src/c/driver/sqlite/sqlite.cc | 8 src/c/driver/sqlite/statement_reader.c | 9 src/c/driver_manager/adbc_driver_manager.cc | 234 ++++++++++++++++++------- src/c/driver_manager/entrypoint.c |only src/c/validation/adbc_validation.cc | 11 - src/c/validation/adbc_validation_connection.cc | 2 src/c/validation/adbc_validation_statement.cc | 28 +- src/c/validation/adbc_validation_util.h | 17 + 14 files changed, 298 insertions(+), 107 deletions(-)
More information about adbcdrivermanager at CRAN
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Title: Publication-Ready Descriptive, Bivariate, Regression,
Correlation and Diagnostic Accuracy Tools for Medical and
Dental Data
Description: The 'dentomedical' package provides a comprehensive suite of tools for
medical and dental research. It includes automated descriptive statistics,
bivariate analysis with intelligent test selection, logistic regression,
and diagnostic accuracy assessment. All functions generate publication-ready tables using 'flextable', ensuring reproducibility and
clarity suitable for manuscripts, reports, and clinical research workflows.
Author: Umar Hussain [aut, cre],
Nikolaos Pandis [aut]
Maintainer: Umar Hussain <drumarhussain@gmail.com>
Diff between dentomedical versions 0.1.3 dated 2025-12-04 and 0.2.0 dated 2026-01-21
dentomedical-0.1.3/dentomedical/man/norm_sum.Rd |only dentomedical-0.2.0/dentomedical/DESCRIPTION | 26 - dentomedical-0.2.0/dentomedical/LICENSE | 4 dentomedical-0.2.0/dentomedical/MD5 | 41 + dentomedical-0.2.0/dentomedical/NAMESPACE | 44 + dentomedical-0.2.0/dentomedical/R/category.R |only dentomedical-0.2.0/dentomedical/R/correlation.R |only dentomedical-0.2.0/dentomedical/R/global.R |only dentomedical-0.2.0/dentomedical/R/impute_missing.R |only dentomedical-0.2.0/dentomedical/R/linear_regression.R | 230 +++++---- dentomedical-0.2.0/dentomedical/R/logistic_regression.R | 133 +++-- dentomedical-0.2.0/dentomedical/R/normality.R | 6 dentomedical-0.2.0/dentomedical/R/post_hoc.R |only dentomedical-0.2.0/dentomedical/R/recode_function.R |only dentomedical-0.2.0/dentomedical/R/stratified.R |only dentomedical-0.2.0/dentomedical/R/sum_crosstab.R |only dentomedical-0.2.0/dentomedical/R/sum_stat.R | 365 +++++++++------ dentomedical-0.2.0/dentomedical/R/sum_stat_p.R | 102 +--- dentomedical-0.2.0/dentomedical/man/category.Rd |only dentomedical-0.2.0/dentomedical/man/impute_missing.Rd |only dentomedical-0.2.0/dentomedical/man/linreg.Rd | 35 - dentomedical-0.2.0/dentomedical/man/logreg.Rd | 21 dentomedical-0.2.0/dentomedical/man/recode_data.Rd |only dentomedical-0.2.0/dentomedical/man/sum_cor.Rd |only dentomedical-0.2.0/dentomedical/man/sum_crosstab.Rd |only dentomedical-0.2.0/dentomedical/man/sum_norm.Rd |only dentomedical-0.2.0/dentomedical/man/sum_posthoc.Rd |only dentomedical-0.2.0/dentomedical/man/sum_stat.Rd | 46 + dentomedical-0.2.0/dentomedical/man/sum_stat_p.Rd | 67 +- dentomedical-0.2.0/dentomedical/man/sum_stat_p_strata.Rd |only 30 files changed, 681 insertions(+), 439 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') 'PostgreSQL' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'PostgreSQL' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcpostgresql versions 0.21.0 dated 2025-11-19 and 0.22.0 dated 2026-01-21
DESCRIPTION | 6 MD5 | 36 ++- R/adbcpostgresql-package.R | 3 man/adbcpostgresql.Rd | 3 src/arrow-adbc |only src/c/driver/postgresql/connection.cc | 40 +++- src/c/driver/postgresql/database.cc | 5 src/c/driver/postgresql/postgresql.cc | 5 src/c/driver/postgresql/result_helper.cc | 15 + src/c/driver/postgresql/result_reader.cc | 5 src/c/driver/postgresql/statement.cc | 5 src/c/driver/sqlite/sqlite.cc | 8 src/c/driver/sqlite/statement_reader.c | 9 src/c/driver_manager/adbc_driver_manager.cc | 234 ++++++++++++++++++------- src/c/driver_manager/entrypoint.c |only src/c/validation/adbc_validation.cc | 11 - src/c/validation/adbc_validation_connection.cc | 2 src/c/validation/adbc_validation_statement.cc | 28 +- src/c/validation/adbc_validation_util.h | 17 + tests/testthat/test-adbcpostgres-package.R | 24 ++ 20 files changed, 347 insertions(+), 109 deletions(-)
More information about adbcpostgresql at CRAN
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