Title: Render 'LaTeX' in Plots
Description: High-level functions to render 'LaTeX' fragments in plots,
including as labels and data symbols in 'ggplot2' plots, plus
low-level functions to
author 'LaTeX' fragments (to produce 'LaTeX' documents),
typeset 'LaTeX' documents (to produce 'DVI' files),
read 'DVI' files (to produce "DVI" objects),
and render "DVI" objects.
Author: Paul Murrell [aut, cre]
Maintainer: Paul Murrell <paul@stat.auckland.ac.nz>
Diff between xdvir versions 0.1-3 dated 2025-07-15 and 0.2-0 dated 2026-01-22
DESCRIPTION | 7 ++--- MD5 | 49 +++++++++++++++++++------------------ NAMESPACE | 2 + R/engine.R | 1 R/fontLib.R | 15 +++++++++-- R/fontspec.R | 32 +++++++++++++++++++++--- R/freetype.R | 7 ++++- R/grob.R | 14 +++++++++- R/harfbuzz.R |only R/luatex.R | 12 ++++++--- R/ops.R | 5 ++- R/xetex.R | 4 +-- R/zzz.R | 21 ++++++++++++++-- build/vignette.rds |binary inst/NEWS.Rd | 9 ++++++ inst/doc/xdvir-intro.R | 49 ++++++++++++++++++++++++++++++------- inst/doc/xdvir-intro.Rmd | 53 +++++++++++++++++++++++++++++++++------- inst/doc/xdvir-intro.html | 7 ++--- man/fontspecPackage.Rd | 9 ++++++ man/grid.latex.Rd | 4 ++- src/freetype.c | 60 ++++++++++++++++++++++++++++++++++++++++++---- src/freetype.h | 2 + src/register.c | 1 tests/dpi.R | 7 ++++- vignettes/xdvir-intro.Rmd | 53 +++++++++++++++++++++++++++++++++------- vignettes/xdvir-intro.bib | 2 - 26 files changed, 337 insertions(+), 88 deletions(-)
Title: Pediatric Complex Chronic Conditions
Description: An implementation of the pediatric complex chronic conditions (CCC)
classification system using R and C++.
Author: Peter DeWitt [aut] ,
Tell Bennett [ctb] ,
James Feinstein [aut] ,
Seth Russell [aut, cre]
Maintainer: Seth Russell <seth.russell@cuanschutz.edu>
Diff between pccc versions 1.0.6 dated 2025-05-16 and 1.0.7 dated 2026-01-22
DESCRIPTION | 10 +++--- MD5 | 26 ++++++++--------- NAMESPACE | 4 -- NEWS.md | 4 ++ R/get_codes.R | 12 -------- R/pccc-package.R | 2 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/pccc-example.R | 64 +++++++++++++++++++++---------------------- inst/doc/pccc-example.html | 9 +++--- inst/doc/pccc-icd-codes.html | 9 +++--- inst/doc/pccc-overview.R | 20 ++++++------- inst/doc/pccc-overview.html | 9 +++--- tests/test_get_codes.R | 9 ------ 14 files changed, 79 insertions(+), 99 deletions(-)
Title: Xsimd C++ Header-Only Library Files
Description: This header-only library provides modern, portable C++ wrappers for SIMD
intrinsics and parallelized, optimized math implementations (SSE, AVX, NEON, AVX512).
By placing this library in this package, we offer an efficient distribution system for
Xsimd <https://github.com/xtensor-stack/xsimd> for R packages using CRAN.
Author: Marc A. Suchard [aut, cre],
Andrew J. Holbrook [aut],
Observational Health Data Sciences and Informatics [cph],
Johan Mabille [cph, ctb] ,
Sylvain Corlay [cph, ctb] ,
Alexander J. Lee [cph, ctb]
Maintainer: Marc A. Suchard <msuchard@ucla.edu>
Diff between RcppXsimd versions 7.1.6-1 dated 2025-11-29 and 7.1.6-2 dated 2026-01-22
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- inst/include/xsimd/memory/xsimd_aligned_allocator.hpp | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Create Interactive Gantt Charts with Work Breakdown Structure
Description: Create Primavera-style interactive Gantt charts with Work Breakdown
Structure (WBS) hierarchy and activities. Features include color-coded WBS
items, indented labels, scrollable views for large projects, dynamic date
formatting, and the ability to dim past activities. Built on top of 'plotly'
for interactive visualizations.
Author: Ahmed Aredah [aut, cre]
Maintainer: Ahmed Aredah <Ahmed.Aredah@gmail.com>
Diff between ganttify versions 0.1.8 dated 2025-12-19 and 0.2.1 dated 2026-01-22
DESCRIPTION | 6 MD5 | 16 NAMESPACE | 24 NEWS.md | 236 +- R/Ganttify.R | 4144 ++++++++++++++++++++++++++++------------------------ R/data.R | 106 - README.md | 762 +++++---- man/Ganttify.Rd | 574 +++---- man/test_project.Rd | 130 - 9 files changed, 3260 insertions(+), 2738 deletions(-)
Title: Create Tessellated Hexagon Maps
Description: Create a hexagon tile map display from spatial polygons. Each
polygon is represented by a hexagon tile, placed as close to it's original
centroid as possible, with a focus on maintaining spatial relationship to
a focal point. Developed to aid visualisation and analysis of spatial
distributions across Australia, which can be challenging due to the
concentration of the population on the coast and wide open interior.
Author: Dianne Cook [aut, cre, ths] ,
Stephanie Kobakian [aut] ,
Matt Cowgill [ctb]
Maintainer: Dianne Cook <dicook@monash.edu>
Diff between sugarbag versions 0.1.9 dated 2025-12-06 and 0.1.10 dated 2026-01-22
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/global.R | 3 ++- inst/doc/Tasmania.html | 4 ++-- 5 files changed, 15 insertions(+), 10 deletions(-)
Title: Tidy Population Genetics
Description: We provide a tidy grammar of population genetics, facilitating
the manipulation and analysis of data on biallelic single nucleotide
polymorphisms (SNPs). 'tidypopgen' scales to very large genetic datasets
by storing genotypes on disk, and performing operations on them in
chunks, without ever loading all data in memory. The full
functionalities of the package are described in Carter et al. (2025)
<doi:10.1111/2041-210x.70204>.
Author: Evie Carter [aut],
Eirlys Tysall [aut],
Andrea Manica [aut, cre, cph] ,
Chang Christopher [ctb] ),
Shaun Purcell [ctb] ),
Bengtsson Henrik [ctb] )
Maintainer: Andrea Manica <am315@cam.ac.uk>
Diff between tidypopgen versions 0.4.1 dated 2025-12-20 and 0.4.2 dated 2026-01-22
DESCRIPTION | 6 - MD5 | 23 +++--- NEWS.md | 4 + R/annotate_group_info.R | 4 - R/gt_pca_tidiers.R | 2 R/predict_gt_pca.R | 71 +++++++++++--------- inst/doc/a01_overview.html | 92 +++++++++++++------------- inst/doc/a02_qc.html | 26 +++---- inst/doc/a03_example_clustering_and_dapc.html | 3 inst/doc/tidypopgen.html | 6 - man/predict_gt_pca.Rd | 7 + tests/testthat/Rplots.pdf |only tests/testthat/test_gt_pca.R | 67 ++++++++++++++++++ 13 files changed, 200 insertions(+), 111 deletions(-)
More information about alphavantagepf at CRAN
Permanent link
Title: Bounded Time Series Regression
Description: Simulate, estimate and forecast a wide range of regression
based dynamic models for bounded time series, covering the most
commonly applied models in the literature. The main calculations are
done in FORTRAN, which translates into very fast algorithms.
Author: Taiane Schaedler Prass [aut, cre, com] ,
Guilherme Pumi [ctb, aut] ,
Fabio Mariano Bayer [ctb] ,
Jack Joseph Dongarra [ctb] ),
Cleve Moler [ctb] ),
Gilbert Wright Stewart [ctb] ),
Ciyou Zhu [ctb] ,
Richard H. Byrd [ctb] ,
Jorge Nocedal [ctb] ,
Jose L [...truncated...]
Maintainer: Taiane Schaedler Prass <taianeprass@gmail.com>
Diff between BTSR versions 1.0.0 dated 2025-06-18 and 1.0.1 dated 2026-01-22
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- R/btsr.R | 1 - R/functions_misc.R | 4 ++-- build/partial.rdb |binary inst/NEWS.md | 6 ++++++ man/fit.control.Rd | 2 +- man/print.btsr.Rd | 52 ++++++++++++++++++++++++++-------------------------- man/summary.Rd | 2 +- src/01_distrib.f90 | 24 +++++++++++++++--------- 10 files changed, 65 insertions(+), 54 deletions(-)
Title: Constructing Hierarchical Voronoi Tessellations and Overlay
Heatmaps for Data Analysis
Description: Facilitates building topology preserving maps for data analysis.
Author: Zubin Dowlaty [aut, cre],
Mu Sigma, Inc. [cph]
Maintainer: Zubin Dowlaty <zubin.dowlaty@mu-sigma.com>
Diff between HVT versions 25.2.8 dated 2025-12-18 and 26.1.1 dated 2026-01-22
HVT-25.2.8/HVT/NEWS.md |only HVT-26.1.1/HVT/DESCRIPTION | 8 HVT-26.1.1/HVT/MD5 | 31 +- HVT-26.1.1/HVT/R/clusterPlot.R | 187 ++++++++++++++-- HVT-26.1.1/HVT/R/global.R | 2 HVT-26.1.1/HVT/R/mcmc_plots.R | 37 ++- HVT-26.1.1/HVT/R/msm.R | 15 + HVT-26.1.1/HVT/R/plotAnimatedFlowmap.R | 5 HVT-26.1.1/HVT/R/plotHVT.R | 374 +++++++++++++++++++++++++-------- HVT-26.1.1/HVT/R/scoreHVT.R | 257 +++++++++++++++++++++- HVT-26.1.1/HVT/README.md | 52 +++- HVT-26.1.1/HVT/inst/doc/HVT.Rmd | 21 + HVT-26.1.1/HVT/inst/doc/HVT.html | 46 +++- HVT-26.1.1/HVT/man/msm.Rd | 4 HVT-26.1.1/HVT/man/plotHVT.Rd | 11 HVT-26.1.1/HVT/man/scoreHVT.Rd | 18 + HVT-26.1.1/HVT/vignettes/HVT.Rmd | 21 + 17 files changed, 889 insertions(+), 200 deletions(-)
Title: Tree Guided Machine Learning for Personalized Predictions and
Precision Diagnostics
Description: Generalization of the classification and regression tree (CART) model that partitions subjects into terminal nodes and tailors machine learning model to each terminal node.
Author: Yunro Chung [aut, cre]
Maintainer: Yunro Chung <yunro.chung@asu.edu>
Diff between tgml versions 0.3.0 dated 2025-12-11 and 0.4.0 dated 2026-01-22
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/05b.combML_mse.R | 36 ++++++++++++++++++------------------ R/05c.combML_bs.R | 36 ++++++++++++++++++------------------ R/tgml.R | 2 ++ man/tgml.Rd | 34 ++++++++++++++++++---------------- 6 files changed, 65 insertions(+), 61 deletions(-)
Title: Simulate from ODE-Based Models
Description: Fast simulation from ordinary differential equation
(ODE) based models typically employed in quantitative pharmacology and
systems biology.
Author: Kyle T Baron [aut, cre] ,
Bill Gillespie [ctb],
Charles Margossian [ctb],
Devin Pastoor [ctb],
Bill Denney [ctb] ,
Dilawar Singh [ctb],
Felicien Le Louedec [ctb] ,
Timothy Waterhouse [ctb] ,
Kyle Meyer [ctb],
Metrum Research Group [cph]
Maintainer: Kyle T Baron <kyleb@metrumrg.com>
Diff between mrgsolve versions 1.6.1 dated 2025-08-22 and 1.7.2 dated 2026-01-22
DESCRIPTION | 8 +- MD5 | 40 +++++++------- NAMESPACE | 1 NEWS.md | 38 ++++++++++++++ R/Aaaa.R | 2 R/class_build.R | 4 - R/handle_spec_block.R | 9 +++ R/modspec.R | 1 R/mread.R | 5 + inst/WORDLIST | 2 inst/base/modelheader.h | 2 inst/base/mrgsolv.h | 8 +- inst/include/dataobject.h | 6 +- inst/include/odeproblem.h | 31 +++++++---- inst/project/housemodel.cpp | 2 src/dataobject.cpp | 18 +++++- src/devtran.cpp | 52 +++++++++++++++---- src/housemodel-mread-header.h | 2 src/housemodel-mread-source.cpp | 3 - src/odeproblem.cpp | 108 ++++++++++++++++++++++++++++------------ tests/testthat/test-mread.R | 15 +++++ 21 files changed, 268 insertions(+), 89 deletions(-)
Title: Generalized Boosted Regression Models
Description: An implementation of extensions to Freund and Schapire's AdaBoost
algorithm and Friedman's gradient boosting machine. Includes regression
methods for least squares, absolute loss, t-distribution loss, quantile
regression, logistic, multinomial logistic, Poisson, Cox proportional hazards
partial likelihood, AdaBoost exponential loss, Huberized hinge loss, and
Learning to Rank measures (LambdaMart). Originally developed by Greg Ridgeway.
Newer version available at github.com/gbm-developers/gbm3.
Author: Greg Ridgeway [aut, cre] ,
Daniel Edwards [ctb],
Brian Kriegler [ctb],
Stefan Schroedl [ctb],
Harry Southworth [ctb],
Brandon Greenwell [ctb] ,
Bradley Boehmke [ctb] ,
Jay Cunningham [ctb],
GBM Developers [aut]
Maintainer: Greg Ridgeway <gridge@upenn.edu>
Diff between gbm versions 2.2.2 dated 2024-06-28 and 2.2.3 dated 2026-01-22
DESCRIPTION | 18 ++++++++++-------- MD5 | 13 +++++++------ R/plot.gbm.R | 2 +- README.md | 2 +- build/vignette.rds |binary inst/doc/gbm.pdf |binary inst/tinytest/desktop.ini |only man/plot.gbm.Rd | 2 +- 8 files changed, 20 insertions(+), 17 deletions(-)
Title: Topological Connectivity Analysis for Numeric Data
Description: Description: Implementation of topological data analysis methods based on
graph-theoretic approaches for discovering topological structures in data.
The core algorithm constructs topological spaces from graphs following
Nada et al. (2018) <doi:10.1002/mma.4726> "New types of topological
structures via graphs".
Author: Jose Mauricio Gomez Julian [aut, cre]
Maintainer: Jose Mauricio Gomez Julian <isadore.nabi@pm.me>
Diff between topologyR versions 0.1.1 dated 2025-10-03 and 0.1.2 dated 2026-01-22
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Create and Manage Todolist using 'Todoist.com' API
Description: Allows you to interact with the API of the "Todoist"
platform. 'Todoist' <https://www.todoist.com/> provides an online task
manager service for teams.
Author: Cervan Girard [cre, aut] ,
Vincent Guyader [aut] ,
ThinkR [cph, fnd]
Maintainer: Cervan Girard <cervan@thinkr.fr>
Diff between rtodoist versions 0.1.0 dated 2020-05-14 and 0.2.0 dated 2026-01-22
rtodoist-0.1.0/rtodoist/R/form_presta.R |only rtodoist-0.1.0/rtodoist/man/add_task_in_project.Rd |only rtodoist-0.1.0/rtodoist/man/get_all.Rd |only rtodoist-0.1.0/rtodoist/man/get_id_project.Rd |only rtodoist-0.1.0/rtodoist/man/get_projects.Rd |only rtodoist-0.1.0/rtodoist/man/get_user_id.Rd |only rtodoist-0.1.0/rtodoist/man/get_users.Rd |only rtodoist-0.1.0/rtodoist/man/init_project.Rd |only rtodoist-0.2.0/rtodoist/DESCRIPTION | 49 rtodoist-0.2.0/rtodoist/MD5 | 75 - rtodoist-0.2.0/rtodoist/NAMESPACE | 46 rtodoist-0.2.0/rtodoist/R/all_objects.R | 70 - rtodoist-0.2.0/rtodoist/R/clean_tools.R |only rtodoist-0.2.0/rtodoist/R/open_todoist_website.R | 34 rtodoist-0.2.0/rtodoist/R/projects.R | 67 rtodoist-0.2.0/rtodoist/R/section.R |only rtodoist-0.2.0/rtodoist/R/tasks.R | 449 ++++-- rtodoist-0.2.0/rtodoist/R/todoist-package.R | 1 rtodoist-0.2.0/rtodoist/R/users.R | 200 ++ rtodoist-0.2.0/rtodoist/R/utils-pipe.R | 6 rtodoist-0.2.0/rtodoist/R/utils.R | 32 rtodoist-0.2.0/rtodoist/R/zzz.R | 2 rtodoist-0.2.0/rtodoist/README.md | 87 - rtodoist-0.2.0/rtodoist/build/vignette.rds |binary rtodoist-0.2.0/rtodoist/inst/doc/how_it_works.R | 105 - rtodoist-0.2.0/rtodoist/inst/doc/how_it_works.Rmd | 72 - rtodoist-0.2.0/rtodoist/inst/doc/how_it_works.html | 823 ++++++------ rtodoist-0.2.0/rtodoist/man/add_project.Rd | 4 rtodoist-0.2.0/rtodoist/man/add_responsible_to_task.Rd | 18 rtodoist-0.2.0/rtodoist/man/add_section.Rd |only rtodoist-0.2.0/rtodoist/man/add_tasks_in_project.Rd | 50 rtodoist-0.2.0/rtodoist/man/add_tasks_in_project_from_df.Rd |only rtodoist-0.2.0/rtodoist/man/add_user_in_project.Rd | 11 rtodoist-0.2.0/rtodoist/man/add_users_in_project.Rd | 16 rtodoist-0.2.0/rtodoist/man/call_api.Rd | 10 rtodoist-0.2.0/rtodoist/man/call_api_project_data.Rd |only rtodoist-0.2.0/rtodoist/man/get_all_data.Rd |only rtodoist-0.2.0/rtodoist/man/get_all_projects.Rd |only rtodoist-0.2.0/rtodoist/man/get_all_users.Rd |only rtodoist-0.2.0/rtodoist/man/get_project_id.Rd |only rtodoist-0.2.0/rtodoist/man/get_section_id.Rd |only rtodoist-0.2.0/rtodoist/man/get_tasks.Rd | 2 rtodoist-0.2.0/rtodoist/man/get_tasks_of_project.Rd |only rtodoist-0.2.0/rtodoist/man/get_users_id.Rd |only rtodoist-0.2.0/rtodoist/man/get_users_in_project.Rd |only rtodoist-0.2.0/rtodoist/man/open_todoist_website_profile.Rd | 2 rtodoist-0.2.0/rtodoist/man/pipe.Rd | 9 rtodoist-0.2.0/rtodoist/man/rtodoist-package.Rd | 3 rtodoist-0.2.0/rtodoist/vignettes/how_it_works.Rmd | 72 - 49 files changed, 1463 insertions(+), 852 deletions(-)
Title: Download and Tidy IPC and CH Data
Description: Utilities to access Integrated Food Security Phase Classification
(IPC) and Cadre Harmonisé (CH) food security data. Wrapper functions are
available for all of the 'IPC-CH' Public API (<https://docs.api.ipcinfo.org>)
simplified and advanced endpoints to easily download the data in a clean and
tidy format.
Author: Giulia Martini [aut, cre, cph]
Maintainer: Giulia Martini <giulia.martini@un.org>
Diff between ripc versions 0.3.2 dated 2026-01-10 and 1.0.0 dated 2026-01-22
DESCRIPTION | 9 +- MD5 | 17 ++-- NEWS.md | 4 + R/create_areas_df.R | 172 +++++++++++++++++++++---------------------- R/create_base_df.R | 200 +++++++++++++++++++++++++-------------------------- R/create_groups_df.R | 76 +++++++++---------- R/extract_dates.R | 78 +++++++++---------- R/null_converter.R | 50 ++++++------ R/population_utils.R | 3 tests |only 10 files changed, 309 insertions(+), 300 deletions(-)
Title: AI Coding Agent for 'RStudio'
Description: Provides an 'RStudio' extension with a chat interface for an AI coding agent to help
users with R programming tasks.
Author: Juan Cruz Rodriguez [aut, cre]
Maintainer: Juan Cruz Rodriguez <jcrodriguez@unc.edu.ar>
Diff between myownrobs versions 0.1.0 dated 2025-09-30 and 1.0.0 dated 2026-01-22
myownrobs-0.1.0/myownrobs/R/execute_llm_tools.R |only myownrobs-0.1.0/myownrobs/R/llm_commands.R |only myownrobs-0.1.0/myownrobs/R/myownrobs-package.R |only myownrobs-0.1.0/myownrobs/R/parse_agent_response.R |only myownrobs-0.1.0/myownrobs/R/send_prompt.R |only myownrobs-0.1.0/myownrobs/man/execute_llm_tools.Rd |only myownrobs-0.1.0/myownrobs/man/parse_agent_response.Rd |only myownrobs-0.1.0/myownrobs/man/save_api_key.Rd |only myownrobs-0.1.0/myownrobs/man/send_prompt.Rd |only myownrobs-0.1.0/myownrobs/man/send_prompt_async.Rd |only myownrobs-0.1.0/myownrobs/man/validate_command_args.Rd |only myownrobs-0.1.0/myownrobs/tests/testthat/test-execute_llm_tools.R |only myownrobs-0.1.0/myownrobs/tests/testthat/test-llm_commands.R |only myownrobs-0.1.0/myownrobs/tests/testthat/test-parse_agent_response.R |only myownrobs-0.1.0/myownrobs/tests/testthat/test-send_prompt.R |only myownrobs-1.0.0/myownrobs/DESCRIPTION | 10 myownrobs-1.0.0/myownrobs/MD5 | 118 +++-- myownrobs-1.0.0/myownrobs/NAMESPACE | 29 - myownrobs-1.0.0/myownrobs/R/ai_tool_create_new_file.R | 32 - myownrobs-1.0.0/myownrobs/R/ai_tool_edit_existing_file.R | 36 - myownrobs-1.0.0/myownrobs/R/ai_tool_fetch_url_content.R | 26 - myownrobs-1.0.0/myownrobs/R/ai_tool_file_glob_search.R | 25 - myownrobs-1.0.0/myownrobs/R/ai_tool_grep_search.R | 29 - myownrobs-1.0.0/myownrobs/R/ai_tool_ls_tool.R | 24 - myownrobs-1.0.0/myownrobs/R/ai_tool_read_currently_open_file.R | 21 - myownrobs-1.0.0/myownrobs/R/ai_tool_read_file.R | 27 - myownrobs-1.0.0/myownrobs/R/ai_tool_run_r_command.R | 28 - myownrobs-1.0.0/myownrobs/R/ai_tool_search_and_replace_in_file.R | 61 +- myownrobs-1.0.0/myownrobs/R/ai_tool_search_web.R | 26 - myownrobs-1.0.0/myownrobs/R/config.R | 2 myownrobs-1.0.0/myownrobs/R/configure_provider.R |only myownrobs-1.0.0/myownrobs/R/get_api_key.R | 11 myownrobs-1.0.0/myownrobs/R/get_available_models.R |only myownrobs-1.0.0/myownrobs/R/get_chat_instance.R |only myownrobs-1.0.0/myownrobs/R/get_llm_tools.R |only myownrobs-1.0.0/myownrobs/R/myownrobs.R | 206 +++------- myownrobs-1.0.0/myownrobs/R/settings_module.R | 18 myownrobs-1.0.0/myownrobs/R/turns.R |only myownrobs-1.0.0/myownrobs/R/validate_credentials.R | 72 --- myownrobs-1.0.0/myownrobs/R/validate_policy_acceptance.R | 4 myownrobs-1.0.0/myownrobs/README.md | 63 ++- myownrobs-1.0.0/myownrobs/inst/app/style.css | 2 myownrobs-1.0.0/myownrobs/inst/policy.yaml | 8 myownrobs-1.0.0/myownrobs/man/configure_provider.Rd |only myownrobs-1.0.0/myownrobs/man/content_to_ui.Rd |only myownrobs-1.0.0/myownrobs/man/get_api_key.Rd | 2 myownrobs-1.0.0/myownrobs/man/get_available_models.Rd |only myownrobs-1.0.0/myownrobs/man/get_chat_instance.Rd |only myownrobs-1.0.0/myownrobs/man/get_ellmer_models.Rd |only myownrobs-1.0.0/myownrobs/man/get_llm_tools.Rd |only myownrobs-1.0.0/myownrobs/man/load_turns.Rd |only myownrobs-1.0.0/myownrobs/man/models_deepseek.Rd |only myownrobs-1.0.0/myownrobs/man/myownrobs.Rd | 13 myownrobs-1.0.0/myownrobs/man/myownrobs_server.Rd | 7 myownrobs-1.0.0/myownrobs/man/myownrobs_ui.Rd | 5 myownrobs-1.0.0/myownrobs/man/nice_names.Rd |only myownrobs-1.0.0/myownrobs/man/save_turns.Rd |only myownrobs-1.0.0/myownrobs/man/set_config.Rd | 2 myownrobs-1.0.0/myownrobs/man/turns_to_ui.Rd |only myownrobs-1.0.0/myownrobs/man/validate_credentials.Rd | 7 myownrobs-1.0.0/myownrobs/tests/testthat/test-ai_tool_create_new_file.R | 6 myownrobs-1.0.0/myownrobs/tests/testthat/test-ai_tool_edit_existing_file.R | 8 myownrobs-1.0.0/myownrobs/tests/testthat/test-ai_tool_fetch_url_content.R | 16 myownrobs-1.0.0/myownrobs/tests/testthat/test-ai_tool_file_glob_search.R | 6 myownrobs-1.0.0/myownrobs/tests/testthat/test-ai_tool_grep_search.R | 8 myownrobs-1.0.0/myownrobs/tests/testthat/test-ai_tool_ls_tool.R | 6 myownrobs-1.0.0/myownrobs/tests/testthat/test-ai_tool_read_currently_open_file.R | 4 myownrobs-1.0.0/myownrobs/tests/testthat/test-ai_tool_read_file.R | 6 myownrobs-1.0.0/myownrobs/tests/testthat/test-ai_tool_run_r_command.R | 6 myownrobs-1.0.0/myownrobs/tests/testthat/test-ai_tool_search_and_replace_in_file.R | 55 +- myownrobs-1.0.0/myownrobs/tests/testthat/test-ai_tool_search_web.R | 6 myownrobs-1.0.0/myownrobs/tests/testthat/test-configure_provider.R |only myownrobs-1.0.0/myownrobs/tests/testthat/test-get_api_key.R |only myownrobs-1.0.0/myownrobs/tests/testthat/test-get_available_models.R |only myownrobs-1.0.0/myownrobs/tests/testthat/test-get_chat_instance.R |only myownrobs-1.0.0/myownrobs/tests/testthat/test-get_llm_tools.R |only myownrobs-1.0.0/myownrobs/tests/testthat/test-myownrobs.R |only myownrobs-1.0.0/myownrobs/tests/testthat/test-turns.R |only myownrobs-1.0.0/myownrobs/tests/testthat/test-validate_credentials.R | 109 ----- 79 files changed, 478 insertions(+), 672 deletions(-)
Title: Adverse Event Enrichment Tests
Description: We extend existing gene enrichment tests to perform adverse
event enrichment analysis. Unlike the continuous gene expression data,
adverse event data are counts. Therefore, adverse event data has many zeros
and ties. We propose two enrichment tests. One is a modified Fisher's exact
test based on pre-selected significant adverse events, while the other is
based on a modified Kolmogorov-Smirnov statistic. We add Covariate
adjustment to improve the analysis."Adverse event enrichment tests using
VAERS" Shuoran Li, Lili Zhao (2020) <doi:10.48550/arXiv.2007.02266>.
Author: Shuoran Li [aut],
Hongfan Chen [aut],
Lili Zhao [aut],
Michael Kleinsasser [aut, cre]
Maintainer: Michael Kleinsasser <mkleinsa@umich.edu>
Diff between AEenrich versions 1.1.0 dated 2021-11-01 and 1.1.1 dated 2026-01-22
DESCRIPTION | 10 - MD5 | 23 +-- R/count_cases.R | 351 +++++++++++++++++++++++------------------------- R/data.R | 81 +++++------ R/enrich.R | 275 ++++++++++++++++++------------------- R/odds_ratio.R | 8 - build |only man/AEenrich-package.Rd | 43 +---- man/count_cases.Rd | 2 man/covid1.Rd | 17 +- man/covid2.Rd | 19 +- man/enrich.Rd | 6 man/group.Rd | 13 - 13 files changed, 410 insertions(+), 438 deletions(-)
Title: Shape Constrained Additive Models
Description: Generalized additive models under shape
constraints on the component functions of the linear predictor.
Models can include multiple shape-constrained (univariate
and bivariate) and unconstrained terms. Routines of the
package 'mgcv' are used to set up the model matrix, print,
and plot the results. Multiple smoothing parameter
estimation by the Generalized Cross Validation or similar.
See Pya and Wood (2015) <doi:10.1007/s11222-013-9448-7>
for an overview. A broad selection of shape-constrained
smoothers, linear functionals of smooths with shape constraints,
and Gaussian models with AR1 residuals.
Author: Natalya Pya [aut, cre]
Maintainer: Natalya Pya <nat.pya@gmail.com>
Diff between scam versions 1.2-20 dated 2025-10-14 and 1.2-21 dated 2026-01-22
ChangeLog | 34 -- DESCRIPTION | 10 MD5 | 28 +- NAMESPACE | 30 +- R/emmeans-support.r |only R/plot.r | 17 - R/predict.scam.R | 10 R/scam.r | 45 +-- R/summary.scam.R | 571 ++++++++++++++++++++--------------------- R/uni.smooth.const-with-po.r | 93 +++++- R/vis.scam.r | 2 R/zzz.R |only build/partial.rdb |binary man/linear.functional.terms.Rd | 6 man/scam.Rd | 2 man/scam.emmeans.support.Rd |only man/vcov.scam.Rd |only 17 files changed, 445 insertions(+), 403 deletions(-)
Title: Parametric Time Warping
Description: Parametric Time Warping aligns patterns, i.e., it aims to
put corresponding features at the same locations. The algorithm
searches for an optimal polynomial describing the warping. It
is possible to align one sample to a reference, several samples
to the same reference, or several samples to several
references. One can choose between calculating individual
warpings, or one global warping for a set of samples and one
reference. Two optimization criteria are implemented: RMS (Root
Mean Square error) and WCC (Weighted Cross Correlation). Both
warping of peak profiles and of peak lists are supported. A
vignette for the latter is contained in the inst/doc directory
of the source package - the vignette source can be found on
the package github site. See `citation("ptw")` for more details.
Author: Jan Gerretzen [ctb],
Paul Eilers [aut],
Hans Wouters [ctb],
Tom Bloemberg [aut],
Ron Wehrens [aut, cre]
Maintainer: Ron Wehrens <ron.wehrens@gmail.com>
Diff between ptw versions 1.9-16 dated 2022-01-19 and 1.9-17 dated 2026-01-22
ptw-1.9-16/ptw/build |only ptw-1.9-17/ptw/DESCRIPTION | 11 ++--- ptw-1.9-17/ptw/MD5 | 14 +++--- ptw-1.9-17/ptw/R/ptw-package.R |only ptw-1.9-17/ptw/R/summary.ptw.R | 6 +- ptw-1.9-17/ptw/inst/CITATION | 74 ++++++++++++++++------------------ ptw-1.9-17/ptw/man/mzchannel2pktab.Rd | 4 - ptw-1.9-17/ptw/man/ptw-package.Rd | 50 +++++++++------------- ptw-1.9-17/ptw/man/ptw.Rd | 3 - 9 files changed, 76 insertions(+), 86 deletions(-)
Title: Less Code with More Comprehensive Results
Description: Each function replaces multiple standard R functions. For example,
two function calls, Read() and CountAll(), generate summary statistics for
all variables in the data frame, plus histograms and bar charts. Other
functions provide data aggregation via pivot tables; comprehensive
regression, ANOVA, and t-test; visualizations including integrated
Violin/Box/Scatter plot for a numerical variable, bar chart, histogram,
box plot, density curves, calibrated power curve; reading multiple data
formats with the same call; variable labels; time series with aggregation
and forecasting; color themes; and Trellis (facet) graphics. Also includes
a confirmatory factor analysis of multiple-indicator measurement models,
pedagogical routines for data simulation (e.g., Central Limit Theorem),
generation and rendering of regression instructions for interpretative output,
and both interactive construction of visualizations and interactive
visualizations with plotly.
Author: David W. Gerbing [aut, cre]
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 4.5 dated 2025-12-11 and 4.5.1 dated 2026-01-22
DESCRIPTION | 6 MD5 | 53 - NEWS.md | 57 + R/Chart.R | 135 +++ R/X.R | 117 -- R/XY.R | 271 ++++-- R/dn.main.R | 6 R/dn.plotly.R | 40 R/hier.plotly.R | 397 +++++---- R/param.VBS.R | 2 R/plt.main.R | 105 +- R/plt.plotly.R | 167 +++- R/plt.time.R | 145 +++ R/plt.time_truncate_groups.R |only R/plt.txt.R | 2 R/radar.plotly.R | 18 R/style.R | 2 R/zzz.R | 58 - R/zzz_plotly.R | 101 +- R/zzz_ts.R | 15 data/dataStockPrice.rda |binary inst/doc/intro.Rmd | 2 inst/doc/intro.html | 1775 ++++++++++++++++++++----------------------- man/Chart.Rd | 7 man/Flows.Rd | 20 man/X.Rd | 10 man/XY.Rd | 30 vignettes/intro.Rmd | 2 28 files changed, 1998 insertions(+), 1545 deletions(-)
Title: Help to Fit of a Parametric Distribution to Non-Censored or
Censored Data
Description: Extends the fitdistr() function (of the MASS package) with several functions
to help the fit of a parametric distribution to non-censored or censored data.
Censored data may contain left censored, right censored and interval censored values,
with several lower and upper bounds. In addition to maximum likelihood estimation (MLE),
the package provides moment matching (MME), quantile matching (QME), maximum goodness-of-fit
estimation (MGE) and maximum spacing estimation (MSE) methods (available only for
non-censored data). Weighted versions of MLE, MME, QME and MSE are available. See e.g.
Casella & Berger (2002), Statistical inference, Pacific Grove, for a general introduction
to parametric estimation.
Author: Marie-Laure Delignette-Muller [aut] ,
Christophe Dutang [aut] ,
Regis Pouillot [ctb],
Jean-Baptiste Denis [ctb],
Aurelie Siberchicot [aut, cre]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between fitdistrplus versions 1.2-4 dated 2025-07-03 and 1.2-5 dated 2026-01-22
fitdistrplus-1.2-4/fitdistrplus/tests/t-cvg-algo.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-fitbench.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-getparam.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-init-actuar.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-manageparam.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-mledist-cvg-NelderMead.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-prefit.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-qmedist-cvg-NelderMead.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-startfixarg-overall.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-starting-value-scale-rate.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-startingvalues-fellerpareto-family.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-startingvalues-inv-family.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-startingvalues-invBurr-family.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-startingvalues-invtrgamma-family.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-startingvalues-othercont-family.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-startingvalues-trgamma-family.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-startingvalues-zeromod-family.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-startingvalues-zerotrunc-family.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-startingvalues.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-util-mmedist-vcov.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-util-npmle.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-util-npsurv-mainfunction.R |only fitdistrplus-1.2-4/fitdistrplus/tests/t-util-testdensity.R |only fitdistrplus-1.2-5/fitdistrplus/DESCRIPTION | 6 fitdistrplus-1.2-5/fitdistrplus/MD5 | 149 +- fitdistrplus-1.2-5/fitdistrplus/R/fitdist.R | 16 fitdistrplus-1.2-5/fitdistrplus/build/partial.rdb |binary fitdistrplus-1.2-5/fitdistrplus/build/vignette.rds |binary fitdistrplus-1.2-5/fitdistrplus/inst/doc/FAQ.R | 11 fitdistrplus-1.2-5/fitdistrplus/inst/doc/FAQ.Rmd | 11 fitdistrplus-1.2-5/fitdistrplus/inst/doc/FAQ.html | 389 +++--- fitdistrplus-1.2-5/fitdistrplus/inst/doc/Optimalgo.R | 2 fitdistrplus-1.2-5/fitdistrplus/inst/doc/Optimalgo.Rmd | 2 fitdistrplus-1.2-5/fitdistrplus/inst/doc/Optimalgo.html | 580 +++++----- fitdistrplus-1.2-5/fitdistrplus/inst/doc/fitdistrplus_vignette.R | 2 fitdistrplus-1.2-5/fitdistrplus/inst/doc/fitdistrplus_vignette.Rmd | 2 fitdistrplus-1.2-5/fitdistrplus/inst/doc/fitdistrplus_vignette.html | 51 fitdistrplus-1.2-5/fitdistrplus/inst/doc/starting-values.html | 4 fitdistrplus-1.2-5/fitdistrplus/man/CIcdfplot.Rd | 3 fitdistrplus-1.2-5/fitdistrplus/man/bootdist.Rd | 1 fitdistrplus-1.2-5/fitdistrplus/man/bootdistcens.Rd | 2 fitdistrplus-1.2-5/fitdistrplus/man/descdist.Rd | 3 fitdistrplus-1.2-5/fitdistrplus/man/fitdist.Rd | 27 fitdistrplus-1.2-5/fitdistrplus/man/gofstat.Rd | 2 fitdistrplus-1.2-5/fitdistrplus/man/logLik-plot.Rd | 2 fitdistrplus-1.2-5/fitdistrplus/man/logLik-surface.Rd | 2 fitdistrplus-1.2-5/fitdistrplus/man/mgedist.Rd | 4 fitdistrplus-1.2-5/fitdistrplus/man/mledist.Rd | 5 fitdistrplus-1.2-5/fitdistrplus/man/mmedist.Rd | 4 fitdistrplus-1.2-5/fitdistrplus/man/msedist.Rd | 2 fitdistrplus-1.2-5/fitdistrplus/man/plotdist.Rd | 4 fitdistrplus-1.2-5/fitdistrplus/man/prefit.Rd | 1 fitdistrplus-1.2-5/fitdistrplus/man/qmedist.Rd | 4 fitdistrplus-1.2-5/fitdistrplus/tests/t-CIcdfplot.R | 4 fitdistrplus-1.2-5/fitdistrplus/tests/t-bootdist.R | 6 fitdistrplus-1.2-5/fitdistrplus/tests/t-bootdistcens.R | 3 fitdistrplus-1.2-5/fitdistrplus/tests/t-cdfcomp.R | 4 fitdistrplus-1.2-5/fitdistrplus/tests/t-denscomp.R | 2 fitdistrplus-1.2-5/fitdistrplus/tests/t-descdist.R | 3 fitdistrplus-1.2-5/fitdistrplus/tests/t-fitdist-customoptim.R | 4 fitdistrplus-1.2-5/fitdistrplus/tests/t-fitdist-hessianpb.R | 2 fitdistrplus-1.2-5/fitdistrplus/tests/t-fitdist-test-arguments.R | 10 fitdistrplus-1.2-5/fitdistrplus/tests/t-fitdist.R | 9 fitdistrplus-1.2-5/fitdistrplus/tests/t-fitdistcens.R | 5 fitdistrplus-1.2-5/fitdistrplus/tests/t-gen-max-spacing-estim.R | 2 fitdistrplus-1.2-5/fitdistrplus/tests/t-gofstat.R | 5 fitdistrplus-1.2-5/fitdistrplus/tests/t-llplot.R | 2 fitdistrplus-1.2-5/fitdistrplus/tests/t-lnL-surf.R | 2 fitdistrplus-1.2-5/fitdistrplus/tests/t-mgedist.R | 5 fitdistrplus-1.2-5/fitdistrplus/tests/t-mledist-asymptotic-vcov.R | 2 fitdistrplus-1.2-5/fitdistrplus/tests/t-mledist-nocens.R | 15 fitdistrplus-1.2-5/fitdistrplus/tests/t-mledist-paramsupport.R | 2 fitdistrplus-1.2-5/fitdistrplus/tests/t-mmedist-asymptotic-vcov.R | 2 fitdistrplus-1.2-5/fitdistrplus/tests/t-mmedist.R | 6 fitdistrplus-1.2-5/fitdistrplus/tests/t-msedist.R | 3 fitdistrplus-1.2-5/fitdistrplus/tests/t-parallel.R | 2 fitdistrplus-1.2-5/fitdistrplus/tests/t-plotdist.R | 3 fitdistrplus-1.2-5/fitdistrplus/tests/t-ppcomp.R | 2 fitdistrplus-1.2-5/fitdistrplus/tests/t-qme-discrete.R | 2 fitdistrplus-1.2-5/fitdistrplus/tests/t-qmedist.R | 5 fitdistrplus-1.2-5/fitdistrplus/tests/t-qqcomp.R | 2 fitdistrplus-1.2-5/fitdistrplus/tests/t-quantiledist.R | 1 fitdistrplus-1.2-5/fitdistrplus/tests/t-weird-ppcomp-cens.R | 2 fitdistrplus-1.2-5/fitdistrplus/tests/t-weird-qqcomp-cens.R | 2 fitdistrplus-1.2-5/fitdistrplus/vignettes/FAQ.Rmd | 11 fitdistrplus-1.2-5/fitdistrplus/vignettes/Optimalgo.Rmd | 2 fitdistrplus-1.2-5/fitdistrplus/vignettes/fitdistrplus_vignette.Rmd | 2 87 files changed, 688 insertions(+), 737 deletions(-)
Title: Dose-Response Network Meta-Analysis in a Frequentist Way
Description: A set of functions providing the implementation of the network meta-analysis model with dose-response relationships, predicted values of the fitted model and dose-response plots in a frequentist way.
Author: Maria Petropoulou [aut, cre] ,
Guido Schwarzer [aut]
Maintainer: Maria Petropoulou <m.petropoulou.a@gmail.com>
Diff between netdose versions 0.7-3 dated 2026-01-13 and 0.7-4 dated 2026-01-22
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 10 +++++++++- R/netdose.R | 6 +++--- man/netdose.Rd | 6 +++--- 5 files changed, 23 insertions(+), 15 deletions(-)
Title: Analysis of Korean National Forest Inventory Database
Description: Understanding the current status of forest resources is essential for monitoring changes
in forest ecosystems and generating related statistics. In South Korea, the National Forest
Inventory (NFI) surveys over 4,500 sample plots nationwide every five years and records 70 items,
including forest stand, forest resource, and forest vegetation surveys. Many researchers use NFI
as the primary data for research, such as biomass estimation or analyzing the importance value of
each species over time and space, depending on the research purpose. However, the large volume
of accumulated forest survey data from across the country can make it challenging to manage and
utilize such a vast dataset. To address this issue, we developed an R package that efficiently
handles large-scale NFI data across time and space. The package offers a comprehensive
workflow for NFI data analysis. It starts with data processing, where read_nfi() function
reconstructs NFI data according to the researcher's needs while [...truncated...]
Author: Sinyoung Park [aut, cre] ,
Wonhee Cho [aut, ctb] ,
Inyoo Kim [aut, ctb] ,
Wontaek Lim [aut, ctb] ,
Dongwook W. Ko [aut, ths]
Maintainer: Sinyoung Park <youngsin0306@kookmin.ac.kr>
Diff between knfi versions 1.0.1.9 dated 2024-12-03 and 1.0.2 dated 2026-01-22
DESCRIPTION | 18 ++++++++++-------- MD5 | 44 ++++++++++++++++++++++++-------------------- NAMESPACE | 1 - NEWS.md | 4 ++++ R/biomass_nfi.R | 4 +++- R/cwd_biomass_nfi.R | 3 ++- R/diversity_nfi.R | 6 +++++- R/info_nfi.R | 1 - R/iv_nfi.R | 3 ++- R/read_nfi.R | 4 ++-- R/summary_nfi.R | 3 ++- R/sysdata.rda |binary R/tsvis_nfi.R | 9 +++++---- build/vignette.rds |binary inst/doc/Published.R |only inst/doc/Published.Rmd |only inst/doc/Published.html |only man/biomass_nfi.Rd | 2 +- man/cwd_biomass_nfi.Rd | 2 +- man/diversity_nfi.Rd | 2 +- man/iv_nfi.Rd | 2 +- man/read_nfi.Rd | 4 ++-- man/summary_nfi.Rd | 2 +- man/tsvis_nfi.Rd | 4 ++-- vignettes/Published.Rmd |only 25 files changed, 68 insertions(+), 50 deletions(-)
Title: R Client Package for Circle CI
Description: Tools for interacting with the 'Circle CI' API
(<https://circleci.com/docs/api/v2/>). Besides executing common tasks
such as querying build logs and restarting builds, this package also
helps setting up permissions to deploy from builds.
Author: David Munoz Tord [cre, ctb],
Patrick Schratz [aut] ,
Max Joseph [rev] ,
Sharla Gelfand [rev]
Maintainer: David Munoz Tord <david.munoztord@mailbox.org>
Diff between circle versions 0.7.3 dated 2024-07-31 and 0.7.4 dated 2026-01-22
DESCRIPTION | 14 MD5 | 130 - NAMESPACE | 66 NEWS.md | 21 R/auth.R | 212 +- R/builds.R | 352 +-- R/checkout-key.R | 396 +-- R/circle-package.R | 62 R/circle.R | 152 - R/env-var.R | 268 +- R/format-builds-helpers.R | 316 +-- R/general.R | 380 +-- R/helpers-github.R | 108 - R/use-circle-deploy.R | 138 - README.md | 134 - build/vignette.rds |binary inst/doc/advanced.R |only inst/doc/advanced.Rmd |only inst/doc/advanced.html |only inst/doc/circle.R | 28 inst/doc/circle.Rmd | 308 +-- inst/doc/circle.html | 1011 ++++----- inst/doc/tic.R | 13 inst/doc/tic.Rmd | 275 +- inst/doc/tic.html | 975 ++++----- man/browse_circle_token.Rd | 102 man/builds.Rd | 182 - man/checkout_key.Rd | 220 +- man/circle-package.Rd | 114 - man/circle.Rd | 122 - man/edit_circle_config.Rd | 28 man/enable_repo.Rd | 94 man/env_var.Rd | 166 - man/get_build_artifacts.Rd | 96 man/get_circle_user.Rd | 52 man/github_info.Rd | 62 man/list_projects.Rd | 84 man/new_build.Rd | 102 man/use_circle_deploy.Rd | 98 tests/fixtures/create_checkout_key().yml | 80 tests/fixtures/delete_checkout_key().yml | 166 - tests/fixtures/delete_env_var().yml | 78 tests/fixtures/enable_repo().yml | 78 tests/fixtures/get_build_artifacts().yml | 2662 +++++++++++++------------- tests/fixtures/get_circle_user().yml | 82 tests/fixtures/get_env_vars().yml | 82 tests/fixtures/get_jobs().yml | 2582 ++++++++++++------------- tests/fixtures/has_checkout_key().yml | 86 tests/fixtures/list_projects().yml | 82 tests/fixtures/new_build().yml | 150 - tests/fixtures/retry_workflow().yml | 1856 +++++++++--------- tests/fixtures/s3-print-circle_collection.yml | 1782 ++++++++--------- tests/fixtures/s3-print-circle_job.yml | 2662 +++++++++++++------------- tests/fixtures/s3-print-circle_pipeline.yml | 100 tests/fixtures/s3-print-circle_workflow.yml | 1782 ++++++++--------- tests/fixtures/set_env_var().yml | 76 tests/testthat.R | 8 tests/testthat/helper-circle.R | 30 tests/testthat/test-1-builds.R | 106 - tests/testthat/test-2-print.R | 142 - tests/testthat/test-auth.R | 28 tests/testthat/test-checkout-keys.R | 84 tests/testthat/test-env-vars.R | 98 tests/testthat/test-general.R | 134 - tests/testthat/test-helpers-github.R | 46 vignettes/advanced.Rmd |only vignettes/circle.Rmd | 308 +-- vignettes/tic.Rmd | 275 +- 68 files changed, 11293 insertions(+), 11233 deletions(-)
Title: Download Infectious Disease Data from 'SurvStat' (Robert Koch
Institute)
Description: Provides an interface to the 'SurvStat' web service from the
Robert Koch Institute (<https://tools.rki.de/SurvStat/SurvStatWebService.svc>)
allowing downloads of disease time series stratified
by pathogen type and subtype, age, and geography from notifiable disease
reports in Germany.
Author: Robert Challen [aut, cre] ,
Bristol Vaccine Centre [fnd, cph]
Maintainer: Robert Challen <rob.challen@bristol.ac.uk>
Diff between rsurvstat versions 0.1.2 dated 2026-01-17 and 0.1.3 dated 2026-01-22
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/sysdata.rda |binary data/CountyKey71Map.rda |binary 5 files changed, 12 insertions(+), 7 deletions(-)
Title: Wrapper for 'SUNDIALS' Solving ODE and Sensitivity Problem
Description: Wrapper for widely used 'SUNDIALS' software (SUite of Nonlinear and DIfferential/ALgebraic Equation Solvers) and more precisely to its 'CVODES' solver. It is aiming to solve ordinary differential equations (ODE) and optionally pending forward sensitivity problem. The wrapper is made 'R' friendly by allowing to pass custom parameters to user's callback functions. Such functions can be both written in 'R' and in 'C++' ('RcppArmadillo' flavor). In case of 'C++', performance is greatly improved so this option is highly advisable when performance matters. If provided, Jacobian matrix can be calculated either in dense or sparse format. In the latter case 'rmumps' package is used to solve corresponding linear systems. Root finding and pending event management are optional and can be specified as 'R' or 'C++' functions too. This makes them a very flexible tool for controlling the ODE system during the time course simulation. 'SUNDIALS' library was published in Hindmarsh et al. (2005) <doi:1 [...truncated...]
Author: Serguei Sokol [cre, aut],
Carol S. Woodward [ctb],
Daniel R. Reynolds [ctb],
Alan C. Hindmarsh [ctb],
David J. Gardner [ctb],
Cody J. Balos [ctb],
Radu Serban [ctb],
Scott D. Cohen [ctb],
Peter N. Brown [ctb],
George Byrne [ctb],
Allan G. Taylor [ctb [...truncated...]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between r2sundials versions 7.2.1-3 dated 2025-04-10 and 7.2.1-4 dated 2026-01-22
r2sundials-7.2.1-3/r2sundials/NEWS |only r2sundials-7.2.1-3/r2sundials/R/translate.R |only r2sundials-7.2.1-4/r2sundials/DESCRIPTION | 10 +++++----- r2sundials-7.2.1-4/r2sundials/MD5 | 17 ++++++++--------- r2sundials-7.2.1-4/r2sundials/NEWS.md |only r2sundials-7.2.1-4/r2sundials/R/RcppExports.R | 3 --- r2sundials-7.2.1-4/r2sundials/build/partial.rdb |binary r2sundials-7.2.1-4/r2sundials/inst/COPYRIGHTS | 2 +- r2sundials-7.2.1-4/r2sundials/man/r2cvodes.Rd | 5 ----- r2sundials-7.2.1-4/r2sundials/src/lib/readme.txt | 2 +- r2sundials-7.2.1-4/r2sundials/src/r2sundials.cpp | 3 --- 11 files changed, 15 insertions(+), 27 deletions(-)
Title: Supervised and Unsupervised Self-Organising Maps
Description: Functions to train self-organising maps (SOMs). Also interrogation of the maps and prediction using trained maps are supported. The name of the package refers to Teuvo Kohonen, the inventor of the SOM.
Author: Ron Wehrens [aut, cre],
Johannes Kruisselbrink [aut]
Maintainer: Ron Wehrens <ron.wehrens@gmail.com>
Diff between kohonen versions 3.0.12 dated 2023-06-09 and 3.0.13 dated 2026-01-22
kohonen-3.0.12/kohonen/inst/doc/kohonen-manual_2007.pdf |only kohonen-3.0.13/kohonen/DESCRIPTION | 17 ++++++++-- kohonen-3.0.13/kohonen/MD5 | 13 +++----- kohonen-3.0.13/kohonen/NEWS | 13 +++++++- kohonen-3.0.13/kohonen/R/classvec2classmat.R | 5 ++- kohonen-3.0.13/kohonen/R/plot.kohonen.R | 9 ++++- kohonen-3.0.13/kohonen/R/predict.kohonen.R | 25 ++++++++++------ kohonen-3.0.13/kohonen/build/partial.rdb |binary 8 files changed, 58 insertions(+), 24 deletions(-)
Title: Desparsified Lasso Inference for Time Series
Description: Calculates the desparsified lasso as originally introduced in van de Geer et al. (2014) <doi:10.1214/14-AOS1221>, and provides inference suitable for high-dimensional time series, based on the long run covariance estimator in Adamek et al. (2020) <doi:10.48550/arXiv.2007.10952>. Also estimates high-dimensional local projections by the desparsified lasso, as described in Adamek et al. (2022) <doi:10.48550/arXiv.2209.03218>.
Author: Robert Adamek [cre, aut],
Stephan Smeekes [aut],
Ines Wilms [aut]
Maintainer: Robert Adamek <robertadamek94@gmail.com>
Diff between desla versions 0.3.0 dated 2023-06-29 and 0.3.1 dated 2026-01-22
DESCRIPTION | 9 - MD5 | 52 ++++++++- NEWS.md | 6 + README.md | 1 build/partial.rdb |binary inst/unit_test_reference_files |only inst/unit_tests.R |only src/rcpp_functions.cpp | 216 ++++++++++++++++++++--------------------- 8 files changed, 167 insertions(+), 117 deletions(-)
Title: Causal Graph Interface
Description: Create, query, and modify causal graphs. 'caugi' (Causal Graph
Interface) is a causality-first, high performance graph package that
provides a simple interface to build, structure, and examine causal
relationships.
Author: Frederik Fabricius-Bjerre [aut, cre, cph],
Johan Larsson [aut] ,
Michael Sachs [aut]
Maintainer: Frederik Fabricius-Bjerre <frederik@fabriciusbjerre.dk>
Diff between caugi versions 0.3.1 dated 2025-12-04 and 1.0.0 dated 2026-01-22
caugi-0.3.1/caugi/inst/examples |only caugi-0.3.1/caugi/src/rust/src/graph/dag.rs |only caugi-0.3.1/caugi/src/rust/src/graph/pdag.rs |only caugi-0.3.1/caugi/tools/coding-helpers.R |only caugi-1.0.0/caugi/DESCRIPTION | 25 caugi-1.0.0/caugi/MD5 | 280 caugi-1.0.0/caugi/NAMESPACE | 42 caugi-1.0.0/caugi/NEWS.md | 133 caugi-1.0.0/caugi/R/DSL-parser.R | 44 caugi-1.0.0/caugi/R/aaa-env.R | 22 caugi-1.0.0/caugi/R/adjustment.R | 272 caugi-1.0.0/caugi/R/all-classes.R |only caugi-1.0.0/caugi/R/as_caugi.R | 229 caugi-1.0.0/caugi/R/caugi-package.R | 1 caugi-1.0.0/caugi/R/caugi.R | 171 caugi-1.0.0/caugi/R/caugi_to.R | 56 caugi-1.0.0/caugi/R/edge_operators.R | 4 caugi-1.0.0/caugi/R/extendr-wrappers.R | 44 caugi-1.0.0/caugi/R/format-caugi.R |only caugi-1.0.0/caugi/R/format-dot.R |only caugi-1.0.0/caugi/R/format-graphml.R |only caugi-1.0.0/caugi/R/format-mermaid.R |only caugi-1.0.0/caugi/R/methods.R | 28 caugi-1.0.0/caugi/R/metrics.R | 11 caugi-1.0.0/caugi/R/operations.R | 431 caugi-1.0.0/caugi/R/options.R |only caugi-1.0.0/caugi/R/plot.R |only caugi-1.0.0/caugi/R/queries.R | 573 caugi-1.0.0/caugi/R/registry.R | 37 caugi-1.0.0/caugi/R/simulation.R | 176 caugi-1.0.0/caugi/R/verbs.R | 140 caugi-1.0.0/caugi/R/zzz.R | 1 caugi-1.0.0/caugi/README.md | 42 caugi-1.0.0/caugi/build/partial.rdb |only caugi-1.0.0/caugi/build/vignette.rds |binary caugi-1.0.0/caugi/inst/WORDLIST |only caugi-1.0.0/caugi/inst/doc/get_started.html | 8 caugi-1.0.0/caugi/inst/doc/package_use.html | 4 caugi-1.0.0/caugi/inst/doc/serialization.R |only caugi-1.0.0/caugi/inst/doc/serialization.Rmd |only caugi-1.0.0/caugi/inst/doc/serialization.html |only caugi-1.0.0/caugi/inst/doc/visualization.R |only caugi-1.0.0/caugi/inst/doc/visualization.Rmd |only caugi-1.0.0/caugi/inst/doc/visualization.html |only caugi-1.0.0/caugi/man/add-caugi_plot-caugi_plot.Rd |only caugi-1.0.0/caugi/man/adjustment_set.Rd | 2 caugi-1.0.0/caugi/man/all_adjustment_sets_admg.Rd |only caugi-1.0.0/caugi/man/all_backdoor_sets.Rd | 2 caugi-1.0.0/caugi/man/ancestors.Rd | 10 caugi-1.0.0/caugi/man/anteriors.Rd |only caugi-1.0.0/caugi/man/as_caugi.Rd | 7 caugi-1.0.0/caugi/man/caugi-package.Rd | 2 caugi-1.0.0/caugi/man/caugi.Rd | 10 caugi-1.0.0/caugi/man/caugi_default_options.Rd |only caugi-1.0.0/caugi/man/caugi_deserialize.Rd |only caugi-1.0.0/caugi/man/caugi_dot.Rd |only caugi-1.0.0/caugi/man/caugi_export.Rd |only caugi-1.0.0/caugi/man/caugi_graphml.Rd |only caugi-1.0.0/caugi/man/caugi_layout.Rd |only caugi-1.0.0/caugi/man/caugi_layout_bipartite.Rd |only caugi-1.0.0/caugi/man/caugi_layout_fruchterman_reingold.Rd |only caugi-1.0.0/caugi/man/caugi_layout_kamada_kawai.Rd |only caugi-1.0.0/caugi/man/caugi_layout_sugiyama.Rd |only caugi-1.0.0/caugi/man/caugi_layout_tiered.Rd |only caugi-1.0.0/caugi/man/caugi_mermaid.Rd |only caugi-1.0.0/caugi/man/caugi_options.Rd |only caugi-1.0.0/caugi/man/caugi_plot.Rd |only caugi-1.0.0/caugi/man/caugi_serialize.Rd |only caugi-1.0.0/caugi/man/children.Rd | 14 caugi-1.0.0/caugi/man/condition_marginalize.Rd |only caugi-1.0.0/caugi/man/d_separated.Rd | 2 caugi-1.0.0/caugi/man/descendants.Rd | 10 caugi-1.0.0/caugi/man/districts.Rd |only caugi-1.0.0/caugi/man/divide-caugi_plot-caugi_plot.Rd |only caugi-1.0.0/caugi/man/dot-cg_state.Rd | 13 caugi-1.0.0/caugi/man/dot-edge_type_from_anteriors.Rd |only caugi-1.0.0/caugi/man/dot-get_edges.Rd | 4 caugi-1.0.0/caugi/man/dot-not_m_separated_for_all_subsets.Rd |only caugi-1.0.0/caugi/man/edge_types.Rd | 10 caugi-1.0.0/caugi/man/edges.Rd | 10 caugi-1.0.0/caugi/man/exogenize.Rd |only caugi-1.0.0/caugi/man/exogenous.Rd | 10 caugi-1.0.0/caugi/man/export-classes.Rd |only caugi-1.0.0/caugi/man/figures/README-unnamed-chunk-5-1.png |only caugi-1.0.0/caugi/man/figures/og.png |only caugi-1.0.0/caugi/man/figures/og.svg |only caugi-1.0.0/caugi/man/format-caugi.Rd |only caugi-1.0.0/caugi/man/format-dot.Rd |only caugi-1.0.0/caugi/man/format-graphml.Rd |only 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caugi-1.0.0/caugi/man/parents.Rd | 16 caugi-1.0.0/caugi/man/plot.Rd |only caugi-1.0.0/caugi/man/read_caugi.Rd |only caugi-1.0.0/caugi/man/read_graphml.Rd |only caugi-1.0.0/caugi/man/registry.Rd | 2 caugi-1.0.0/caugi/man/same_nodes.Rd | 10 caugi-1.0.0/caugi/man/simulate_data.Rd |only caugi-1.0.0/caugi/man/skeleton.Rd | 3 caugi-1.0.0/caugi/man/spouses.Rd |only caugi-1.0.0/caugi/man/subgraph.Rd | 10 caugi-1.0.0/caugi/man/to_dot.Rd |only caugi-1.0.0/caugi/man/to_graphml.Rd |only caugi-1.0.0/caugi/man/to_mermaid.Rd |only caugi-1.0.0/caugi/man/topological_sort.Rd |only caugi-1.0.0/caugi/man/write_caugi.Rd |only caugi-1.0.0/caugi/man/write_dot.Rd |only caugi-1.0.0/caugi/man/write_graphml.Rd |only caugi-1.0.0/caugi/man/write_mermaid.Rd |only caugi-1.0.0/caugi/src/rust/Cargo.lock | 257 caugi-1.0.0/caugi/src/rust/Cargo.toml | 8 caugi-1.0.0/caugi/src/rust/src/edges/mod.rs | 2 caugi-1.0.0/caugi/src/rust/src/graph/admg |only caugi-1.0.0/caugi/src/rust/src/graph/ag |only caugi-1.0.0/caugi/src/rust/src/graph/alg.rs | 89 caugi-1.0.0/caugi/src/rust/src/graph/alg/acyclic.rs |only caugi-1.0.0/caugi/src/rust/src/graph/alg/reachability.rs |only caugi-1.0.0/caugi/src/rust/src/graph/alg/subsets.rs |only caugi-1.0.0/caugi/src/rust/src/graph/alg/topo_sort.rs |only caugi-1.0.0/caugi/src/rust/src/graph/alg/traversal.rs |only caugi-1.0.0/caugi/src/rust/src/graph/builder.rs | 61 caugi-1.0.0/caugi/src/rust/src/graph/dag |only caugi-1.0.0/caugi/src/rust/src/graph/error.rs |only caugi-1.0.0/caugi/src/rust/src/graph/graphml.rs |only caugi-1.0.0/caugi/src/rust/src/graph/layout |only caugi-1.0.0/caugi/src/rust/src/graph/metrics.rs | 397 caugi-1.0.0/caugi/src/rust/src/graph/mod.rs | 7 caugi-1.0.0/caugi/src/rust/src/graph/pdag |only caugi-1.0.0/caugi/src/rust/src/graph/serialization.rs |only caugi-1.0.0/caugi/src/rust/src/graph/ug.rs | 13 caugi-1.0.0/caugi/src/rust/src/graph/view.rs | 1163 + caugi-1.0.0/caugi/src/rust/src/lib.rs | 465 caugi-1.0.0/caugi/src/rust/vendor.tar.xz |binary caugi-1.0.0/caugi/tests/testthat/test-DSL-parser.R | 18 caugi-1.0.0/caugi/tests/testthat/test-aaa-env.R | 4 caugi-1.0.0/caugi/tests/testthat/test-adjustment.R | 82 caugi-1.0.0/caugi/tests/testthat/test-admg.R |only caugi-1.0.0/caugi/tests/testthat/test-ag.R |only caugi-1.0.0/caugi/tests/testthat/test-aid.R | 8197 +++++++++-- caugi-1.0.0/caugi/tests/testthat/test-as_caugi.R | 67 caugi-1.0.0/caugi/tests/testthat/test-bipartite-layout.R |only caugi-1.0.0/caugi/tests/testthat/test-caugi_graph.R | 33 caugi-1.0.0/caugi/tests/testthat/test-caugi_to.R | 23 caugi-1.0.0/caugi/tests/testthat/test-edge_operators.R | 9 caugi-1.0.0/caugi/tests/testthat/test-export.R |only caugi-1.0.0/caugi/tests/testthat/test-format-caugi.R |only caugi-1.0.0/caugi/tests/testthat/test-format-dot.R |only caugi-1.0.0/caugi/tests/testthat/test-format-graphml.R |only caugi-1.0.0/caugi/tests/testthat/test-format-mermaid.R |only caugi-1.0.0/caugi/tests/testthat/test-metrics.R | 65 caugi-1.0.0/caugi/tests/testthat/test-operations.R | 403 caugi-1.0.0/caugi/tests/testthat/test-plot-composition.R |only caugi-1.0.0/caugi/tests/testthat/test-plot.R |only caugi-1.0.0/caugi/tests/testthat/test-queries.R | 442 caugi-1.0.0/caugi/tests/testthat/test-simulation.R | 278 caugi-1.0.0/caugi/tests/testthat/test-tiered-layout.R |only caugi-1.0.0/caugi/tests/testthat/test-topological-sort.R |only caugi-1.0.0/caugi/tests/testthat/test-verbs.R | 165 caugi-1.0.0/caugi/tools/msrv.R | 8 caugi-1.0.0/caugi/vignettes/references.bib |only caugi-1.0.0/caugi/vignettes/serialization.Rmd |only caugi-1.0.0/caugi/vignettes/visualization.Rmd |only 183 files changed, 13483 insertions(+), 1863 deletions(-)
More information about vald.extractor at CRAN
Permanent link
Title: Extra Functions for 'gtsummary' Table Styling
Description: Provides additional convenience functions for 'gtsummary'
(Sjoberg et al. (2021) <doi:10.32614/RJ-2021-053>) & 'gt' tables,
including automatic variable labeling from dictionaries, standardized
missing value display, and consistent formatting helpers for streamlined
table styling workflows.
Author: Kyle Grealis [aut, cre] ,
Raymond Balise [ctb] ,
Daniel Maya [ctb]
Maintainer: Kyle Grealis <kyleGrealis@proton.me>
Diff between sumExtras versions 0.2.0 dated 2026-01-19 and 0.3.0 dated 2026-01-22
DESCRIPTION | 16 MD5 | 18 NEWS.md | 14 R/clean_table.R | 13 R/extras.R | 54 inst/doc/labeling.html | 1652 +++++++++++++-------------- inst/doc/styling.html | 2530 +++++++++++++++++++++--------------------- inst/doc/sumExtras-intro.html | 1210 ++++++++++---------- man/extras.Rd | 22 man/sumExtras-package.Rd | 1 10 files changed, 2808 insertions(+), 2722 deletions(-)
Title: Causal Inference in Spatiotemporal Event Data
Description: Implementation of Matched Wake Analysis (mwa) for studying causal relationships in spatiotemporal event data, introduced by Schutte and Donnay (2014) <doi:10.1016/j.polgeo.2014.03.001>.
Author: Sebastian Schutte [aut],
Karsten Donnay [aut, cre]
Maintainer: Karsten Donnay <kdonnay@gmx.net>
Diff between mwa versions 0.5.0 dated 2025-09-29 and 0.5.1 dated 2026-01-22
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 4 ++++ R/mwa.R | 19 +------------------ 4 files changed, 12 insertions(+), 25 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-01-07 1.5.0
2025-09-30 1.4.0
2023-03-21 1.3
2022-09-04 1.2
2021-04-27 1.1
Title: Simulate Survival Data
Description: Simulate survival times from standard parametric survival
distributions (exponential, Weibull, Gompertz), 2-component mixture
distributions, or a user-defined hazard, log hazard, cumulative hazard,
or log cumulative hazard function. Baseline covariates can be included
under a proportional hazards assumption.
Time dependent effects (i.e. non-proportional hazards) can be included by
interacting covariates with linear time or a user-defined function of time.
Clustered event times are also accommodated.
The 2-component mixture distributions can allow for a variety of flexible
baseline hazard functions reflecting those seen in practice.
If the user wishes to provide a user-defined
hazard or log hazard function then this is possible, and the resulting
cumulative hazard function does not need to have a closed-form solution.
For details see the supporting paper <doi:10.18637/jss.v097.i03>.
Note that this package is modelled on the 'survsim' package available in
the 'Stata' software (see [...truncated...]
Author: Sam Brilleman [cre, aut, cph],
Alessandro Gasparini [ctb]
Maintainer: Sam Brilleman <sam.brilleman@gmail.com>
Diff between simsurv versions 1.0.0 dated 2021-01-13 and 1.0.1 dated 2026-01-22
DESCRIPTION | 12 LICENSE | 1348 ++++++++--------- MD5 | 58 NAMESPACE | 8 NEWS.md | 145 - R/brcancer.R | 52 R/simsurv.R | 2422 +++++++++++++++---------------- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 42 inst/doc/simsurv_technical.R | 6 inst/doc/simsurv_technical.Rmd | 574 +++---- inst/doc/simsurv_technical.html | 981 ++++++------ inst/doc/simsurv_usage.R | 474 +++--- inst/doc/simsurv_usage.Rmd | 798 +++++----- inst/doc/simsurv_usage.html | 1369 ++++++++--------- man/simsurv.Rd | 2 tests/testthat.R | 8 tests/testthat/helpers/check_bias.R | 24 tests/testthat/helpers/is_exponential.R | 6 tests/testthat/helpers/is_gompertz.R | 6 tests/testthat/helpers/is_weibull.R | 6 tests/testthat/helpers/recover_betas.R | 12 tests/testthat/helpers/recover_gammas.R | 18 tests/testthat/helpers/recover_lambdas.R | 26 tests/testthat/helpers/recover_params.R | 32 tests/testthat/helpers/sim_run.R | 66 tests/testthat/test_simsurv.R | 156 - vignettes/simsurv_technical.Rmd | 574 +++---- vignettes/simsurv_usage.Rmd | 798 +++++----- 30 files changed, 5012 insertions(+), 5011 deletions(-)
Title: Automatic Forecasting Procedure
Description: Implements a procedure for forecasting time series data based on
an additive model where non-linear trends are fit with yearly, weekly, and
daily seasonality, plus holiday effects. It works best with time series
that have strong seasonal effects and several seasons of historical data.
Prophet is robust to missing data and shifts in the trend, and typically
handles outliers well.
Author: Cuong Duong [cre, aut],
Sean Taylor [aut],
Ben Letham [aut]
Maintainer: Cuong Duong <cuong.duong242@gmail.com>
Diff between prophet versions 1.0 dated 2021-03-30 and 1.1.7 dated 2026-01-22
prophet-1.0/prophet/data |only prophet-1.1.7/prophet/DESCRIPTION | 24 prophet-1.1.7/prophet/MD5 | 59 prophet-1.1.7/prophet/NAMESPACE | 1 prophet-1.1.7/prophet/R/data.R | 8 prophet-1.1.7/prophet/R/diagnostics.R | 59 prophet-1.1.7/prophet/R/plot.R | 4 prophet-1.1.7/prophet/R/prophet.R | 143 prophet-1.1.7/prophet/R/stan_backends.R |only prophet-1.1.7/prophet/R/stanmodels.R | 2 prophet-1.1.7/prophet/R/sysdata.rda |only prophet-1.1.7/prophet/R/utilities.R | 2 prophet-1.1.7/prophet/build/vignette.rds |binary prophet-1.1.7/prophet/inst/doc/quick_start.R | 4 prophet-1.1.7/prophet/inst/doc/quick_start.html | 630 ++- prophet-1.1.7/prophet/inst/stan/prophet.stan | 17 prophet-1.1.7/prophet/man/check_cmdstanr.Rd |only prophet-1.1.7/prophet/man/dot-fit.Rd |only prophet-1.1.7/prophet/man/dot-load_model.Rd |only prophet-1.1.7/prophet/man/dot-sampling.Rd |only prophet-1.1.7/prophet/man/dot-stan_args.Rd |only prophet-1.1.7/prophet/man/dyplot.prophet.Rd | 2 prophet-1.1.7/prophet/man/flat_growth_init.Rd | 2 prophet-1.1.7/prophet/man/generated_holidays.Rd | 9 prophet-1.1.7/prophet/man/get_stan_backend.Rd |only prophet-1.1.7/prophet/man/make_all_seasonality_features.Rd | 2 prophet-1.1.7/prophet/man/prophet.Rd | 28 prophet-1.1.7/prophet/man/setup_dataframe.Rd | 2 prophet-1.1.7/prophet/src/Makevars | 5 prophet-1.1.7/prophet/src/Makevars.win | 5 prophet-1.1.7/prophet/src/RcppExports.cpp | 5 prophet-1.1.7/prophet/src/stanExports_prophet.cc | 34 prophet-1.1.7/prophet/src/stanExports_prophet.h | 2161 +++++++------ prophet-1.1.7/prophet/tests/testthat/test_diagnostics.R | 2 prophet-1.1.7/prophet/tests/testthat/test_prophet.R | 5 35 files changed, 1929 insertions(+), 1286 deletions(-)
Title: Spatial Lag Model Trees
Description: Model-based linear model trees adjusting for spatial correlation using a
simultaneous autoregressive spatial lag, Wagner and Zeileis (2019)
<doi:10.1111/geer.12146>.
Author: Martin Wagner [aut] ,
Achim Zeileis [aut, cre] ,
Roger Bivand [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between lagsarlmtree versions 1.0-1 dated 2019-04-08 and 1.0-2 dated 2026-01-22
lagsarlmtree-1.0-1/lagsarlmtree/NEWS |only lagsarlmtree-1.0-2/lagsarlmtree/DESCRIPTION | 18 ++++++++++-------- lagsarlmtree-1.0-2/lagsarlmtree/MD5 | 14 +++++++------- lagsarlmtree-1.0-2/lagsarlmtree/NEWS.md |only lagsarlmtree-1.0-2/lagsarlmtree/build/partial.rdb |binary lagsarlmtree-1.0-2/lagsarlmtree/data/GrowthNUTS2.rda |binary lagsarlmtree-1.0-2/lagsarlmtree/data/WeightsNUTS2.rda |binary lagsarlmtree-1.0-2/lagsarlmtree/man/WeightsNUTS2.Rd | 7 ++++--- lagsarlmtree-1.0-2/lagsarlmtree/man/lagsarlmtree.Rd | 2 +- 9 files changed, 22 insertions(+), 19 deletions(-)
Title: Local Large Language Model Inference Engine
Description: Enables R users to run large language models locally using 'GGUF' model files
and the 'llama.cpp' inference engine. Provides a complete R interface for loading models,
generating text completions, and streaming responses in real-time. Supports local
inference without requiring cloud APIs or internet connectivity, ensuring complete
data privacy and control. Based on the 'llama.cpp' project by Georgi Gerganov (2023) <https://github.com/ggml-org/llama.cpp>.
Author: Pawan Rama Mali [aut, cre, cph],
Georgi Gerganov [aut, cph] ,
The ggml authors [cph] ,
Jeffrey Quesnelle [ctb, cph] ,
Bowen Peng [ctb, cph] ,
pi6am [ctb] ,
Ivan Yurchenko [ctb] ,
Dirk Eddelbuettel [ctb]
Maintainer: Pawan Rama Mali <prm@outlook.in>
This is a re-admission after prior archival of version 0.1.0 dated 2025-09-22
Diff between edgemodelr versions 0.1.0 dated 2025-09-22 and 0.1.4 dated 2026-01-22
edgemodelr-0.1.0/edgemodelr/src/r_output_redirect.h |only edgemodelr-0.1.4/edgemodelr/DESCRIPTION | 37 edgemodelr-0.1.4/edgemodelr/LICENSE | 2 edgemodelr-0.1.4/edgemodelr/MD5 | 80 edgemodelr-0.1.4/edgemodelr/NAMESPACE | 8 edgemodelr-0.1.4/edgemodelr/R/api.R | 1008 +++++++++- edgemodelr-0.1.4/edgemodelr/R/edgemodelr-package.R | 2 edgemodelr-0.1.4/edgemodelr/R/ollama.R |only edgemodelr-0.1.4/edgemodelr/R/zzz.R | 8 edgemodelr-0.1.4/edgemodelr/cleanup |only edgemodelr-0.1.4/edgemodelr/inst/CITATION |only edgemodelr-0.1.4/edgemodelr/inst/COPYRIGHTS |only edgemodelr-0.1.4/edgemodelr/inst/examples/07_modern_bslib_streaming_chat.R |only edgemodelr-0.1.4/edgemodelr/inst/examples/ollama_integration_example.R |only edgemodelr-0.1.4/edgemodelr/inst/examples/small_model_optimization_example.R |only edgemodelr-0.1.4/edgemodelr/inst/include |only edgemodelr-0.1.4/edgemodelr/man/dot-download_with_curl.Rd |only edgemodelr-0.1.4/edgemodelr/man/dot-download_with_r.Rd |only edgemodelr-0.1.4/edgemodelr/man/dot-download_with_wget.Rd |only edgemodelr-0.1.4/edgemodelr/man/dot-is_valid_gguf_file.Rd |only edgemodelr-0.1.4/edgemodelr/man/dot-robust_download.Rd |only edgemodelr-0.1.4/edgemodelr/man/edge_benchmark.Rd |only edgemodelr-0.1.4/edgemodelr/man/edge_clean_cache.Rd | 4 edgemodelr-0.1.4/edgemodelr/man/edge_download_model.Rd | 80 edgemodelr-0.1.4/edgemodelr/man/edge_download_url.Rd |only edgemodelr-0.1.4/edgemodelr/man/edge_find_gguf_models.Rd |only edgemodelr-0.1.4/edgemodelr/man/edge_find_ollama_models.Rd |only edgemodelr-0.1.4/edgemodelr/man/edge_load_ollama_model.Rd |only edgemodelr-0.1.4/edgemodelr/man/edge_small_model_config.Rd |only edgemodelr-0.1.4/edgemodelr/man/edgemodelr-package.Rd | 6 edgemodelr-0.1.4/edgemodelr/man/test_ollama_model_compatibility.Rd |only edgemodelr-0.1.4/edgemodelr/src/Makevars | 31 edgemodelr-0.1.4/edgemodelr/src/Makevars.win | 86 edgemodelr-0.1.4/edgemodelr/src/RcppExports.cpp | 2 edgemodelr-0.1.4/edgemodelr/src/bindings.cpp | 316 ++- edgemodelr-0.1.4/edgemodelr/src/ggml/ggml-backend-reg.cpp | 149 + edgemodelr-0.1.4/edgemodelr/src/ggml/ggml-cpu/ggml-cpu.c | 20 edgemodelr-0.1.4/edgemodelr/src/ggml/ggml-cpu/ops.h | 10 edgemodelr-0.1.4/edgemodelr/src/ggml/ggml-cpu/unary-ops.cpp | 2 edgemodelr-0.1.4/edgemodelr/src/ggml/ggml-opt.cpp | 2 edgemodelr-0.1.4/edgemodelr/src/ggml/ggml-quants.c | 25 edgemodelr-0.1.4/edgemodelr/src/ggml/ggml.c | 20 edgemodelr-0.1.4/edgemodelr/src/ggml/ggml.h | 7 edgemodelr-0.1.4/edgemodelr/src/llama/llama-grammar.cpp | 2 edgemodelr-0.1.4/edgemodelr/src/llama/llama-impl.cpp | 2 edgemodelr-0.1.4/edgemodelr/src/llama/llama-impl.h | 5 edgemodelr-0.1.4/edgemodelr/src/llama/llama-model.cpp | 2 edgemodelr-0.1.4/edgemodelr/src/llama/llama-quant.cpp | 2 edgemodelr-0.1.4/edgemodelr/src/llama/unicode.cpp | 2 edgemodelr-0.1.4/edgemodelr/tests/testthat/test-e2e-integration.R |only edgemodelr-0.1.4/edgemodelr/tests/testthat/test-model-loading.R | 24 edgemodelr-0.1.4/edgemodelr/tests/testthat/test-small-model-config.R |only edgemodelr-0.1.4/edgemodelr/tests/testthat/test-utility-functions.R |only 53 files changed, 1590 insertions(+), 354 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-18 1.3.0
2017-04-08 1.2.0
2016-09-02 1.1.1
2015-10-29 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-20 1.2.1
2016-11-16 1.2.0
2016-11-08 1.1.0
2016-07-21 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-04 0.1.1
2017-07-08 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-16 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-09 0.15.1
2016-09-06 0.15.0
2016-02-12 0.13.10
2016-02-11 0.13.9
2015-07-29 0.13.7
2015-06-19 0.13.6
2015-03-06 0.13.4
2014-12-17 0.13.2
2014-11-21 0.13.1
2014-07-19 0.12.1
2014-06-25 0.11.0
2014-06-09 0.10.0
2014-05-28 0.9.1
2014-05-19 0.9.0
2014-03-13 0.8.1
2014-02-28 0.8
2014-02-12 0.7
2013-12-06 0.6
2013-11-11 0.5
2013-10-28 0.4
2013-08-13 0.3
2013-08-06 0.2
2013-05-09 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-05 1.0.0
Title: Fitting Multivariate Bidirectional Mendelian Randomization
Networks Using Bayesian Directed Cyclic Graphical Models
Description: Addressing a central challenge encountered in Mendelian randomization (MR) studies, where MR primarily focuses on discerning the effects of individual exposures on specific outcomes and establishes causal links between them. Using a network-based methodology, the intricacy involving interdependent outcomes due to numerous factors has been tackled through this routine. Based on Ni et al. (2018) <doi:10.1214/17-BA1087>, 'MR.RGM' extends to a broader exploration of the causal landscape by leveraging on network structures and involves the construction of causal graphs that capture interactions between response variables and consequently between responses and instrument variables. The resulting Graph visually represents these causal connections, showing directed edges with effect sizes labeled. 'MR.RGM' facilitates the navigation of various data availability scenarios effectively by accommodating three input formats, i.e., individual-level data and two types of summary-level data. The [...truncated...]
Author: Bitan Sarkar [aut, cre],
Yang Ni [aut]
Maintainer: Bitan Sarkar <bitan@tamu.edu>
Diff between MR.RGM versions 0.0.5 dated 2025-09-29 and 0.1.0 dated 2026-01-22
MR.RGM-0.0.5/MR.RGM/src/Generate.cpp |only MR.RGM-0.0.5/MR.RGM/src/code.cpp |only MR.RGM-0.1.0/MR.RGM/DESCRIPTION | 19 MR.RGM-0.1.0/MR.RGM/MD5 | 55 MR.RGM-0.1.0/MR.RGM/NAMESPACE | 1 MR.RGM-0.1.0/MR.RGM/R/Imports.R |only MR.RGM-0.1.0/MR.RGM/R/NetworkMotif.R | 2 MR.RGM-0.1.0/MR.RGM/R/RGM.R | 1371 ++++++++-- MR.RGM-0.1.0/MR.RGM/R/RcppExports.R | 100 MR.RGM-0.1.0/MR.RGM/README.md | 382 +- MR.RGM-0.1.0/MR.RGM/inst |only MR.RGM-0.1.0/MR.RGM/man/NetworkMotif.Rd | 2 MR.RGM-0.1.0/MR.RGM/man/RGM.Rd | 221 - MR.RGM-0.1.0/MR.RGM/man/figures/README-unnamed-chunk-11-1.png |binary MR.RGM-0.1.0/MR.RGM/man/figures/README-unnamed-chunk-11-2.png |binary MR.RGM-0.1.0/MR.RGM/man/figures/README-unnamed-chunk-12-2.png |only MR.RGM-0.1.0/MR.RGM/man/figures/README-unnamed-chunk-14-1.png |only MR.RGM-0.1.0/MR.RGM/man/figures/README-unnamed-chunk-8-1.png |binary MR.RGM-0.1.0/MR.RGM/src/NetworkMotif.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_SpikeSlab_Diag.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_SpikeSlab_Diag_Covariates.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_SpikeSlab_Diag_Star.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_SpikeSlab_Diag_Star_Covariates.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_SpikeSlab_IW.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_SpikeSlab_IW_Covariates.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_SpikeSlab_IW_Star.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_SpikeSlab_IW_Star_Covariates.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_SpikeSlab_SSSL.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_SpikeSlab_SSSL_Covariates.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_SpikeSlab_SSSL_Star.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_SpikeSlab_SSSL_Star_Covariates.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_Threshold_Diag.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_Threshold_Diag_Covariates.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_Threshold_Diag_Star.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_Threshold_Diag_Star_Covariates.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_Threshold_IW.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_Threshold_IW_Covariates.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_Threshold_IW_Star.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_Threshold_IW_Star_Covariates.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_Threshold_SSSL.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_Threshold_SSSL_Covariates.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_Threshold_SSSL_Star.cpp |only MR.RGM-0.1.0/MR.RGM/src/RGM_Threshold_SSSL_Star_Covariates.cpp |only MR.RGM-0.1.0/MR.RGM/src/RcppExports.cpp | 641 ++-- 44 files changed, 2051 insertions(+), 743 deletions(-)
Title: Wavelet System Prediction
Description: The wavelet-based variance transformation method is used for system modelling and prediction. It refines predictor spectral representation using Wavelet Theory, which leads to improved model specifications and prediction accuracy. Details of methodologies used in the package can be found in Jiang, Z., Sharma, A., & Johnson, F. (2020) <doi:10.1029/2019WR026962>, Jiang, Z., Rashid, M. M., Johnson, F., & Sharma, A. (2020) <doi:10.1016/j.envsoft.2020.104907>, and Jiang, Z., Sharma, A., & Johnson, F. (2021) <doi:10.1016/J.JHYDROL.2021.126816>.
Author: Ze Jiang [aut, cre] ,
Md. Mamunur Rashid [aut] ,
Ashish Sharma [aut] ,
Fiona Johnson [aut]
Maintainer: Ze Jiang <ze.jiang@unsw.edu.au>
Diff between WASP versions 1.4.4 dated 2024-07-20 and 1.4.5 dated 2026-01-22
DESCRIPTION | 21 MD5 | 14 build/vignette.rds |binary data/datalist | 22 inst/doc/WASP.R | 1587 ++++++++--------- inst/doc/WASP.Rmd | 9 inst/doc/WASP.html | 4680 ++++++++++++++++++++++++++--------------------------- vignettes/WASP.Rmd | 9 8 files changed, 3172 insertions(+), 3170 deletions(-)
Title: Exploratory Data Analysis for the 'spatstat' Family
Description: Functionality for exploratory data analysis and nonparametric analysis of
spatial data, mainly spatial point patterns,
in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb],
Warick Brown [cph],
Achmad Choiruddin [ctb],
Ya-Mei Chang [ctb],
Jean-Francois Coeurjolly [ctb],
Lucia Cobo Sanchez [ctb, cph],
Ottma [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.explore versions 3.6-0 dated 2025-11-22 and 3.7-0 dated 2026-01-22
DESCRIPTION | 18 +-- MD5 | 178 +++++++++++++++++------------------ NAMESPACE | 2 NEWS | 48 +++++++++ R/FGmultiInhom.R | 20 ++-- R/Fest.R | 6 - R/Gest.R | 7 - R/Gmulti.R | 24 ++-- R/Jest.R | 8 + R/Jinhom.R | 15 +-- R/Jmulti.R | 21 ++-- R/Kinhom.R | 6 - R/Kmulti.R | 27 ++--- R/Kmulti.inhom.R | 16 +-- R/Ksector.R | 6 - R/bw.CvL.R | 2 R/bw.CvL.adaptive.R | 2 R/bw.diggle.R | 2 R/cdftest.R | 2 R/clarkevans.R | 2 R/clusterset.R | 4 R/compileCDF.R | 2 R/exactppm.R | 6 + R/fasp.R | 16 ++- R/hasenvelope.R | 2 R/laslett.R | 2 R/localpcf.R | 2 R/markcorr.R | 194 +++++++++++++++++++++++++-------------- R/metriccontact.R | 6 - R/nncount.R | 2 R/pairs.im.R | 2 R/pcf.R | 6 - R/pcfinhom.R | 6 - R/pcfmulti.R | 14 +- R/pcfmulti.inhom.R | 14 +- R/plot.fasp.R | 145 ++++++++++++++++------------- R/plot.fv.R | 12 +- R/rho2hat.R | 2 R/rhohat.R | 2 R/smoothfun.R | 2 R/spatialcdf.R | 2 R/ssf.R | 2 R/tolcon.R | 2 R/transect.R | 2 inst/doc/packagesizes.txt | 1 inst/info/packagesizes.txt | 1 man/Emark.Rd | 8 + man/Fest.Rd | 6 + man/Finhom.Rd | 6 + man/FmultiInhom.Rd | 8 + man/Gcross.Rd | 7 + man/Gcross.inhom.Rd | 6 + man/Gdot.Rd | 7 + man/Gdot.inhom.Rd | 7 + man/Gest.Rd | 6 + man/Ginhom.Rd | 6 + man/Gmulti.Rd | 6 + man/GmultiInhom.Rd | 8 + man/Jcross.Rd | 6 + man/Jdot.Rd | 6 + man/Jest.Rd | 6 + man/Jinhom.Rd | 6 + man/Jmulti.Rd | 8 + man/Kcross.Rd | 9 + man/Kcross.inhom.Rd | 7 + man/Kdot.Rd | 8 + man/Kdot.inhom.Rd | 7 + man/Kinhom.Rd | 5 - man/Kmark.Rd | 6 + man/Kmulti.inhom.Rd | 6 + man/Ksector.Rd | 6 + man/markconnect.Rd | 6 + man/markcorr.Rd | 56 ++++++++--- man/markcrosscorr.Rd | 15 ++- man/markequal.Rd | 6 + man/markvario.Rd | 6 + man/pcf.ppp.Rd | 6 + man/pcfcross.Rd | 6 + man/pcfcross.inhom.Rd | 6 + man/pcfdot.Rd | 6 + man/pcfdot.inhom.Rd | 6 + man/pcfinhom.Rd | 7 + man/pcfmulti.Rd | 6 + man/plot.fasp.Rd | 7 + man/rectcontact.Rd | 7 + man/spatstat.explore-internal.Rd | 4 man/spatstat.explore-package.Rd | 2 tests/testsEtoF.R | 16 +++ tests/testsGtoJ.R | 2 tests/testsS.R | 45 +++++++++ 90 files changed, 828 insertions(+), 417 deletions(-)
More information about spatstat.explore at CRAN
Permanent link
Title: Radiocarbon Equations
Description: Provides functions for the calibration of radiocarbon dates, as well as options to calculate different radiocarbon-related timescales (cal BP, cal BC/AD, C14 age, F14C, pMC, D14C) and estimating the effects of contamination or local reservoir offsets (Reimer and Reimer 2001 <doi:10.1017/S0033822200038339>). The methods follow long-established recommendations such as Stuiver and Polach (1977) <doi:10.1017/S0033822200003672> and Reimer et al. (2004) <doi:10.1017/S0033822200033154>. This package uses the calibration curves from the data package 'rintcal'.
Author: Maarten Blaauw [aut, cre] ,
Paula Reimer [ctb] ,
Vegard Martinsen [ctb]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between rice versions 1.6.0 dated 2026-01-08 and 1.6.2 dated 2026-01-22
DESCRIPTION | 6 +- MD5 | 26 ++++----- NEWS.md | 8 ++ R/calibrate.R | 6 +- R/marine.R | 140 ++++++++++++++------------------------------------- R/rice.R | 1 README.md | 7 -- build/partial.rdb |binary build/vignette.rds |binary data/shells.rda |binary inst/doc/rice.R | 16 ++++- inst/doc/rice.Rmd | 20 +++++-- inst/doc/rice.html | 144 ++++++++++++++++++++++++++--------------------------- vignettes/rice.Rmd | 20 +++++-- 14 files changed, 186 insertions(+), 208 deletions(-)
Title: (Randomized) Quasi-Random Number Generators
Description: Functionality for generating (randomized) quasi-random numbers in
high dimensions.
Author: Marius Hofert [aut, cre],
Christiane Lemieux [aut]
Maintainer: Marius Hofert <mhofert@hku.hk>
Diff between qrng versions 0.0-10 dated 2024-02-29 and 0.0-11 dated 2026-01-22
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/qrng.R | 2 ++ demo/test_functions.R | 5 +++-- 4 files changed, 12 insertions(+), 9 deletions(-)
Title: Easily Create Presentation-Ready Display Tables
Description: Build display tables from tabular data with an easy-to-use
set of functions. With its progressive approach, we can construct
display tables with a cohesive set of table parts. Table values can be
formatted using any of the included formatting functions. Footnotes
and cell styles can be precisely added through a location targeting
system. The way in which 'gt' handles things for you means that you
don't often have to worry about the fine details.
Author: Richard Iannone [aut, cre] ,
Joe Cheng [aut],
Barret Schloerke [aut] ,
Shannon Haughton [aut],
Ellis Hughes [aut] ,
Alexandra Lauer [aut] ,
Romain Francois [aut],
JooYoung Seo [aut] ,
Ken Brevoort [aut] ,
Olivier Roy [aut],
Posit Software, PBC [cph, [...truncated...]
Maintainer: Richard Iannone <rich@posit.co>
Diff between gt versions 1.2.0 dated 2025-12-16 and 1.3.0 dated 2026-01-22
DESCRIPTION | 16 LICENSE | 2 MD5 | 265 ++++----- NAMESPACE | 2 NEWS.md | 28 R/as_data_frame.R | 2 R/build_data.R | 11 R/cols_add.R | 2 R/cols_align.R | 2 R/cols_align_decimal.R | 2 R/cols_hide.R | 2 R/cols_label.R | 2 R/cols_merge.R | 2 R/cols_move.R | 2 R/cols_units.R | 2 R/cols_width.R | 2 R/compile_scss.R | 22 R/data_color.R | 2 R/datasets.R | 2 R/dt__.R | 2 R/dt_body.R | 11 R/dt_boxhead.R | 2 R/dt_cols_merge.R | 2 R/dt_data.R | 2 R/dt_footnotes.R | 2 R/dt_formats.R | 2 R/dt_groups_rows.R | 2 R/dt_has_built.R | 2 R/dt_heading.R | 2 R/dt_locale.R | 2 R/dt_options.R | 3 R/dt_row_groups.R | 2 R/dt_row_order.R |only R/dt_source_notes.R | 2 R/dt_spanners.R | 2 R/dt_stub_df.R | 101 +++ R/dt_stubhead.R | 2 R/dt_styles.R | 2 R/dt_substitutions.R | 2 R/dt_summary.R | 2 R/dt_summary_cols.R | 2 R/dt_transforms.R | 2 R/export.R | 2 R/extract.R | 6 R/fmt.R | 21 R/fmt_date_time.R | 2 R/fmt_number.R | 21 R/format_data.R | 41 - R/format_vec.R | 4 R/gt-package.R | 2 R/gt.R | 3 R/gt_group.R | 2 R/gt_preview.R | 2 R/gt_split.R | 2 R/gtsave.R | 2 R/helpers.R | 12 R/image.R | 2 R/info_tables.R | 613 ++++++++++++++++++++- R/knitr-utils.R | 4 R/location_methods.R | 2 R/modify_rows.R | 177 ++++++ R/nanoplot.R | 2 R/opts.R | 2 R/print.R | 2 R/quarto.R | 2 R/reexports.R | 2 R/render_as_html.R | 2 R/render_as_i_html.R | 2 R/resolver.R | 12 R/rows_add.R | 4 R/shiny.R | 2 R/substitution.R | 2 R/summary_columns.R | 6 R/summary_rows.R | 2 R/tab_create_modify.R | 12 R/tab_footnote.R | 14 R/tab_info.R | 2 R/tab_options.R | 15 R/tab_remove.R | 2 R/tab_style.R | 25 R/tab_style_body.R | 2 R/text_transform.R | 2 R/topics.R | 2 R/utils.R | 21 R/utils_color_contrast.R | 2 R/utils_environments.R | 2 R/utils_examples.R | 2 R/utils_general_str_formatting.R | 2 R/utils_plots.R | 2 R/utils_render_common.R | 24 R/utils_render_grid.R | 7 R/utils_render_html.R | 54 + R/utils_render_latex.R | 490 ++++++++++++++-- R/utils_render_rtf.R | 22 R/utils_render_xml.R | 2 R/utils_units.R | 2 R/z_utils_render_footnotes.R | 2 R/zzz.R | 3 inst/gt_tables/fa_icons_vec.rds |binary inst/gt_tables/info_conversions.rds |binary inst/gt_tables/info_flags.rds |binary inst/gt_tables/info_google_fonts.rds |binary inst/gt_tables/info_icons.rds |binary inst/gt_tables/info_paletteer.rds |binary man/cells_stub.Rd | 14 man/fmt_currency.Rd | 8 man/fmt_integer.Rd | 8 man/fmt_number.Rd | 8 man/fmt_number_si.Rd | 2 man/fmt_tf.Rd | 8 man/grand_summary_rows.Rd | 1 man/info_currencies.Rd | 1 man/info_date_style.Rd | 1 man/info_flags.Rd | 3 man/info_google_fonts.Rd | 1 man/info_icons.Rd | 3 man/info_locales.Rd | 1 man/info_paletteer.Rd | 1 man/info_tf_style.Rd |only man/info_time_style.Rd | 1 man/info_unit_conversions.Rd | 3 man/row_group_order.Rd | 1 man/row_order.Rd |only man/rows_add.Rd | 3 man/summary_columns.Rd | 5 man/summary_rows.Rd | 1 man/tab_options.Rd | 8 man/vec_fmt_number_si.Rd | 2 tests/testthat/Rplots.pdf |binary tests/testthat/helper-gt_object.R | 4 tests/testthat/test-l_cell_text_alignment.R | 198 ++++++ tests/testthat/test-l_cols_align.R | 35 + tests/testthat/test-l_cols_width.R | 137 ++++ tests/testthat/test-multicolumn_stub_latex.R | 78 ++ tests/testthat/test-multicolumn_stub_na_handling.R | 24 135 files changed, 2272 insertions(+), 486 deletions(-)
Title: Functions to Create Publication-Quality Plots
Description: Contains several plotting functions such as barplots, scatterplots, heatmaps, as well as functions to combine plots and assist in the creation of these plots. These functions will give users great ease of use and customization options in broad use for biomedical applications, as well as general purpose plotting. Each of the functions also provides valid default settings to make plotting data more efficient and producing high quality plots with standard colour schemes simpler. All functions within this package are capable of producing plots that are of the quality to be presented in scientific publications and journals. P'ng et al.; BPG: Seamless, automated and interactive visualization of scientific data; BMC Bioinformatics 2019 <doi:10.1186/s12859-019-2610-2>.
Author: Paul Boutros [aut, cre],
Christine P'ng [ctb],
Jeff Green [ctb],
Stephenie Prokopec [ctb],
Ontario Institute for Cancer Research [cph],
The R Core Team [cph],
The R Foundation [cph],
Robert Gentleman [ctb],
Ross Ihaka [ctb],
Caden Bugh [ctb],
Dan Kni [...truncated...]
Maintainer: Paul Boutros <PBoutros@sbpdiscovery.org>
Diff between BoutrosLab.plotting.general versions 7.1.2 dated 2024-10-04 and 7.1.5 dated 2026-01-22
BoutrosLab.plotting.general-7.1.2/BoutrosLab.plotting.general/NEWS |only BoutrosLab.plotting.general-7.1.5/BoutrosLab.plotting.general/DESCRIPTION | 21 BoutrosLab.plotting.general-7.1.5/BoutrosLab.plotting.general/MD5 | 21 BoutrosLab.plotting.general-7.1.5/BoutrosLab.plotting.general/NEWS.md | 26 BoutrosLab.plotting.general-7.1.5/BoutrosLab.plotting.general/R/create.violinplot.R | 527 +++++----- BoutrosLab.plotting.general-7.1.5/BoutrosLab.plotting.general/R/force.colour.scheme.R | 6 BoutrosLab.plotting.general-7.1.5/BoutrosLab.plotting.general/R/legend.grob.R | 4 BoutrosLab.plotting.general-7.1.5/BoutrosLab.plotting.general/build/vignette.rds |binary BoutrosLab.plotting.general-7.1.5/BoutrosLab.plotting.general/inst/doc/PlottingGuide.pdf |binary BoutrosLab.plotting.general-7.1.5/BoutrosLab.plotting.general/man/create.heatmap.Rd | 2 BoutrosLab.plotting.general-7.1.5/BoutrosLab.plotting.general/man/create.violinplot.Rd | 14 BoutrosLab.plotting.general-7.1.5/BoutrosLab.plotting.general/man/legend.grob.Rd | 2 12 files changed, 343 insertions(+), 280 deletions(-)
More information about BoutrosLab.plotting.general at CRAN
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