Title: Semi-Automatic Reporting of Ordinary Surveys
Description: Offers a systematic way for conditional reporting of figures and tables for many
(and bivariate combinations of) variables, typically from survey data.
Contains interactive 'ggiraph'-based
(<https://CRAN.R-project.org/package=ggiraph>) plotting functions and
data frame-based summary tables (bivariate significance tests,
frequencies/proportions, unique open ended responses, etc) with
many arguments for customization, and extensions possible. Uses a global
options() system for neatly reducing redundant code.
Also contains tools for immediate saving of objects and returning a hashed link to the object,
useful for creating download links to high resolution images upon rendering in 'Quarto'.
Suitable for highly customized reports, primarily intended for survey
research.
Author: Stephan Daus [aut, cre, cph] ,
Julia Silge [ctb] ,
David Robinson [ctb] ,
Nordic Institute for The Studies of Innovation, Research and Education
[fnd],
Kristiania University College [fnd]
Maintainer: Stephan Daus <stephus.daus@gmail.com>
Diff between saros versions 1.6.0 dated 2025-11-10 and 1.6.1 dated 2026-01-27
DESCRIPTION | 6 MD5 | 66 ++- NEWS.md | 20 + R/crosstable.data.frame.R | 5 R/crosstable.survey.R | 4 R/crowd_plots_as_tabset.R | 7 R/get_common_levels.R | 10 R/girafe.R | 2 R/global_settings.R | 6 R/keep_cols.R | 9 R/make_content.cat_plot_html.R | 2 R/make_content.int_plot_html.R | 14 R/makeme.R | 10 R/makeme_helpers.R | 143 +++++++- R/n_rng.R | 19 + R/summarize_cat_cat_data.R | 18 - R/txt_from_cat_mesos_plots.R | 161 +++++++-- R/validate_makeme_options.R | 2 build/vignette.rds |binary inst/doc/for_chapter_author.html | 48 ++ inst/doc/for_chapter_author.qmd | 2 inst/doc/for_developers.html | 2 inst/doc/for_readers.html | 2 inst/doc/saros_name.html | 2 man/auto_detect_makeme_type.Rd |only man/global_settings_reset.Rd | 4 man/makeme.Rd | 13 man/normalize_makeme_arguments.Rd | 6 man/txt_from_cat_mesos_plots.Rd | 6 tests/testthat/_snaps/makeme-int-plot-html-snapshots/int-plot-html-with-crowd.svg | 50 +- tests/testthat/test-crowd_plots_as_tabset.R | 25 + tests/testthat/test-makeme-auto-type-detection.R |only tests/testthat/test-txt_from_cat_mesos_plots.R | 167 ++++++++++ tests/testthat/test-utils-global_settings.R | 9 vignettes/for_chapter_author.qmd | 2 35 files changed, 673 insertions(+), 169 deletions(-)
Title: Thin Wrapper for Mapping Library 'AMap'('Gaode')
Description: Build and control interactive 2D and 3D maps with 'R/Shiny'. Lean set of powerful commands wrapping native calls to 'AMap' <https://lbs.amap.com/api/jsapi-v2/summary/>.
Deliver rich mapping functionality with minimal overhead.
Author: Larry Helgason [aut, cre, cph]
Maintainer: Larry Helgason <larry@helgasoft.com>
Diff between amapro versions 0.1.3 dated 2023-05-11 and 0.1.4 dated 2026-01-27
DESCRIPTION | 16 +- MD5 | 32 ++-- NEWS.md | 12 + R/amapro.R | 13 + README.md | 4 build/vignette.rds |binary demo/am.shiny.R | 336 +++++++++++++++++++++++---------------------- inst/doc/info.R | 2 inst/doc/info.Rmd | 20 +- inst/doc/info.html | 40 +++-- inst/figures/demo.txt | 2 inst/htmlwidgets/amapro.js | 127 ++++++++++++----- inst/js/amap.js | 6 inst/js/loca.js | 41 ----- man/Introduction.Rd | 28 ++- man/am.cmd.Rd | 13 + vignettes/info.Rmd | 20 +- 17 files changed, 399 insertions(+), 313 deletions(-)
Title: Stochastic Tree Ensembles (XBART and BART) for Supervised
Learning and Causal Inference
Description: Flexible stochastic tree ensemble software.
Robust implementations of Bayesian Additive Regression Trees (BART)
Chipman, George, McCulloch (2010) <doi:10.1214/09-AOAS285>
for supervised learning and Bayesian Causal Forests (BCF)
Hahn, Murray, Carvalho (2020) <doi:10.1214/19-BA1195>
for causal inference. Enables model serialization and parallel sampling
and provides a low-level interface for custom stochastic forest samplers.
Author: Drew Herren [aut, cre] ,
Richard Hahn [aut],
Jared Murray [aut],
Carlos Carvalho [aut],
Jingyu He [aut],
Pedro Lima [ctb],
stochtree contributors [cph],
Eigen contributors [cph] ,
xgboost contributors [cph] ,
treelite contributors [cph] ,
Microsoft C [...truncated...]
Maintainer: Drew Herren <drewherrenopensource@gmail.com>
Diff between stochtree versions 0.2.1 dated 2025-12-11 and 0.3.0 dated 2026-01-27
stochtree-0.2.1/stochtree/man/expand_dims_1d.Rd |only stochtree-0.2.1/stochtree/man/expand_dims_2d.Rd |only stochtree-0.2.1/stochtree/man/expand_dims_2d_diag.Rd |only stochtree-0.3.0/stochtree/DESCRIPTION | 6 stochtree-0.3.0/stochtree/MD5 | 223 +-- stochtree-0.3.0/stochtree/NAMESPACE | 12 stochtree-0.3.0/stochtree/NEWS.md | 13 stochtree-0.3.0/stochtree/R/bart.R | 447 +++++++ stochtree-0.3.0/stochtree/R/bcf.R | 590 +++++++++- stochtree-0.3.0/stochtree/R/calibration.R | 6 stochtree-0.3.0/stochtree/R/config.R | 30 stochtree-0.3.0/stochtree/R/data.R | 41 stochtree-0.3.0/stochtree/R/forest.R | 45 stochtree-0.3.0/stochtree/R/generics.R | 25 stochtree-0.3.0/stochtree/R/kernel.R | 12 stochtree-0.3.0/stochtree/R/model.R | 33 stochtree-0.3.0/stochtree/R/posterior_transformation.R | 20 stochtree-0.3.0/stochtree/R/random_effects.R | 69 + stochtree-0.3.0/stochtree/R/serialization.R | 75 + stochtree-0.3.0/stochtree/R/utils.R | 22 stochtree-0.3.0/stochtree/R/variance.R | 12 stochtree-0.3.0/stochtree/configure | 18 stochtree-0.3.0/stochtree/configure.ac | 2 stochtree-0.3.0/stochtree/configure.win | 7 stochtree-0.3.0/stochtree/man/CppJson.Rd | 8 stochtree-0.3.0/stochtree/man/CppRNG.Rd | 7 stochtree-0.3.0/stochtree/man/Forest.Rd | 8 stochtree-0.3.0/stochtree/man/ForestDataset.Rd | 7 stochtree-0.3.0/stochtree/man/ForestModel.Rd | 10 stochtree-0.3.0/stochtree/man/ForestModelConfig.Rd | 9 stochtree-0.3.0/stochtree/man/ForestSamples.Rd | 8 stochtree-0.3.0/stochtree/man/GlobalModelConfig.Rd | 9 stochtree-0.3.0/stochtree/man/Outcome.Rd | 7 stochtree-0.3.0/stochtree/man/RandomEffectSamples.Rd | 13 stochtree-0.3.0/stochtree/man/RandomEffectsDataset.Rd | 9 stochtree-0.3.0/stochtree/man/RandomEffectsModel.Rd | 7 stochtree-0.3.0/stochtree/man/RandomEffectsTracker.Rd | 13 stochtree-0.3.0/stochtree/man/bart.Rd | 2 stochtree-0.3.0/stochtree/man/bcf.Rd | 2 stochtree-0.3.0/stochtree/man/calibrateInverseGammaErrorVariance.Rd | 8 stochtree-0.3.0/stochtree/man/computeForestLeafIndices.Rd | 2 stochtree-0.3.0/stochtree/man/computeForestLeafVariances.Rd | 6 stochtree-0.3.0/stochtree/man/computeForestMaxLeafIndex.Rd | 2 stochtree-0.3.0/stochtree/man/compute_bart_posterior_interval.Rd | 2 stochtree-0.3.0/stochtree/man/compute_bcf_posterior_interval.Rd | 2 stochtree-0.3.0/stochtree/man/compute_contrast_bart_model.Rd | 5 stochtree-0.3.0/stochtree/man/compute_contrast_bcf_model.Rd | 2 stochtree-0.3.0/stochtree/man/convertPreprocessorToJson.Rd | 2 stochtree-0.3.0/stochtree/man/createBARTModelFromCombinedJson.Rd | 3 stochtree-0.3.0/stochtree/man/createBARTModelFromCombinedJsonString.Rd | 3 stochtree-0.3.0/stochtree/man/createBARTModelFromJson.Rd | 3 stochtree-0.3.0/stochtree/man/createBARTModelFromJsonFile.Rd | 3 stochtree-0.3.0/stochtree/man/createBARTModelFromJsonString.Rd | 3 stochtree-0.3.0/stochtree/man/createBCFModelFromCombinedJson.Rd | 3 stochtree-0.3.0/stochtree/man/createBCFModelFromCombinedJsonString.Rd | 3 stochtree-0.3.0/stochtree/man/createBCFModelFromJson.Rd | 3 stochtree-0.3.0/stochtree/man/createBCFModelFromJsonFile.Rd | 3 stochtree-0.3.0/stochtree/man/createBCFModelFromJsonString.Rd | 3 stochtree-0.3.0/stochtree/man/createCppJson.Rd | 6 stochtree-0.3.0/stochtree/man/createCppJsonFile.Rd | 6 stochtree-0.3.0/stochtree/man/createCppJsonString.Rd | 6 stochtree-0.3.0/stochtree/man/createCppRNG.Rd | 2 stochtree-0.3.0/stochtree/man/createForest.Rd | 6 stochtree-0.3.0/stochtree/man/createForestDataset.Rd | 6 stochtree-0.3.0/stochtree/man/createForestModel.Rd | 6 stochtree-0.3.0/stochtree/man/createForestModelConfig.Rd | 6 stochtree-0.3.0/stochtree/man/createForestSamples.Rd | 6 stochtree-0.3.0/stochtree/man/createGlobalModelConfig.Rd | 6 stochtree-0.3.0/stochtree/man/createOutcome.Rd | 6 stochtree-0.3.0/stochtree/man/createPreprocessorFromJson.Rd | 2 stochtree-0.3.0/stochtree/man/createPreprocessorFromJsonString.Rd | 2 stochtree-0.3.0/stochtree/man/createRandomEffectSamples.Rd | 6 stochtree-0.3.0/stochtree/man/createRandomEffectsDataset.Rd | 6 stochtree-0.3.0/stochtree/man/createRandomEffectsModel.Rd | 6 stochtree-0.3.0/stochtree/man/createRandomEffectsTracker.Rd | 6 stochtree-0.3.0/stochtree/man/extract_parameter.Rd |only stochtree-0.3.0/stochtree/man/extract_parameter.bartmodel.Rd |only stochtree-0.3.0/stochtree/man/extract_parameter.bcfmodel.Rd |only stochtree-0.3.0/stochtree/man/getRandomEffectSamples.Rd | 2 stochtree-0.3.0/stochtree/man/getRandomEffectSamples.bartmodel.Rd | 2 stochtree-0.3.0/stochtree/man/getRandomEffectSamples.bcfmodel.Rd | 2 stochtree-0.3.0/stochtree/man/loadForestContainerCombinedJson.Rd | 6 stochtree-0.3.0/stochtree/man/loadForestContainerCombinedJsonString.Rd | 6 stochtree-0.3.0/stochtree/man/loadForestContainerJson.Rd | 6 stochtree-0.3.0/stochtree/man/loadRandomEffectSamplesCombinedJson.Rd | 6 stochtree-0.3.0/stochtree/man/loadRandomEffectSamplesCombinedJsonString.Rd | 6 stochtree-0.3.0/stochtree/man/loadRandomEffectSamplesJson.Rd | 6 stochtree-0.3.0/stochtree/man/loadScalarJson.Rd | 6 stochtree-0.3.0/stochtree/man/loadVectorJson.Rd | 6 stochtree-0.3.0/stochtree/man/plot.bartmodel.Rd |only stochtree-0.3.0/stochtree/man/plot.bcfmodel.Rd |only stochtree-0.3.0/stochtree/man/predict.bartmodel.Rd | 2 stochtree-0.3.0/stochtree/man/predict.bcfmodel.Rd | 2 stochtree-0.3.0/stochtree/man/preprocessPredictionData.Rd | 2 stochtree-0.3.0/stochtree/man/preprocessTrainData.Rd | 2 stochtree-0.3.0/stochtree/man/print.bartmodel.Rd |only stochtree-0.3.0/stochtree/man/print.bcfmodel.Rd |only stochtree-0.3.0/stochtree/man/resetActiveForest.Rd | 7 stochtree-0.3.0/stochtree/man/resetForestModel.Rd | 6 stochtree-0.3.0/stochtree/man/resetRandomEffectsModel.Rd | 6 stochtree-0.3.0/stochtree/man/resetRandomEffectsTracker.Rd | 6 stochtree-0.3.0/stochtree/man/rootResetRandomEffectsModel.Rd | 6 stochtree-0.3.0/stochtree/man/rootResetRandomEffectsTracker.Rd | 6 stochtree-0.3.0/stochtree/man/sampleGlobalErrorVarianceOneIteration.Rd | 6 stochtree-0.3.0/stochtree/man/sampleLeafVarianceOneIteration.Rd | 6 stochtree-0.3.0/stochtree/man/sample_bart_posterior_predictive.Rd | 2 stochtree-0.3.0/stochtree/man/sample_bcf_posterior_predictive.Rd | 2 stochtree-0.3.0/stochtree/man/sample_without_replacement.Rd | 6 stochtree-0.3.0/stochtree/man/saveBARTModelToJson.Rd | 2 stochtree-0.3.0/stochtree/man/saveBARTModelToJsonFile.Rd | 2 stochtree-0.3.0/stochtree/man/saveBARTModelToJsonString.Rd | 2 stochtree-0.3.0/stochtree/man/saveBCFModelToJson.Rd | 2 stochtree-0.3.0/stochtree/man/saveBCFModelToJsonFile.Rd | 2 stochtree-0.3.0/stochtree/man/saveBCFModelToJsonString.Rd | 2 stochtree-0.3.0/stochtree/man/savePreprocessorToJsonString.Rd | 2 stochtree-0.3.0/stochtree/man/summary.bartmodel.Rd |only stochtree-0.3.0/stochtree/man/summary.bcfmodel.Rd |only stochtree-0.3.0/stochtree/tests/testthat/test-random-effects.R |only stochtree-0.3.0/stochtree/tests/testthat/test-utils.R | 54 119 files changed, 1826 insertions(+), 341 deletions(-)
Title: National Information Platforms for Nutrition Anthropometric Data
Toolkit
Description: An implementation of the National Information Platforms for
Nutrition or NiPN's analytic methods for assessing quality of anthropometric
datasets that include measurements of weight, height or length, middle upper
arm circumference, sex and age. The focus is on anthropometric status but
many of the presented methods could be applied to other variables.
Author: Mark Myatt [aut] ,
Ernest Guevarra [aut, cre]
Maintainer: Ernest Guevarra <ernest@guevarra.io>
Diff between nipnTK versions 0.2.0 dated 2024-04-06 and 0.2.2 dated 2026-01-27
DESCRIPTION | 17 +++++++----- MD5 | 44 +++++++++++++++---------------- NEWS.md | 16 +++++------ R/ageChildren.R | 3 +- R/ageHeaping.R | 3 +- R/ageRatioTest.R | 3 +- R/data.R | 2 - R/digitPreference.R | 3 +- R/fullTable.R | 3 +- R/greensIndex.R | 3 +- R/national.SMART.R | 3 +- R/outliersMD.R | 3 +- R/outliersUV.R | 3 +- R/sexRatioTest.R | 3 +- R/skewKurt.R | 3 +- README.md | 71 +++++++++++++++++++++++++++++++++++++-------------- build/vignette.rds |binary inst/CITATION | 4 +- inst/WORDLIST | 15 +++------- inst/doc/nipnTK.html | 2 - man/as.ex02.Rd | 2 - man/figures/logo.png |binary tests/testthat.R | 8 +++++ 23 files changed, 132 insertions(+), 82 deletions(-)
Title: Procedures Based on Item Response Theory Models for the
Development of Short Test Forms
Description: Implement different Item Response Theory (IRT) based procedures for the development
of static short test forms (STFs) from a test. Two main procedures are considered (Epifania, Anselmi & Robusto, 2022 <doi:10.1007/978-3-031-27781-8_7>).
The procedures differ in how the most informative items are selected for the inclusion in the STF, either by considering their item information functions without any reference to any specific latent trait level (benchmark procedure) or by considering their information
with respect to specific latent trait levels, denoted as theta targets (theta target procedure).
Three methods are implemented for the definition of the theta targets: (i) as the midpoints of equal intervals on the latent trait,
(ii) as the centroids of the clusters obtained by clustering the latent trait,
and (iii) as user-defined values. Importantly, the number of theta targets defines the number of items included in the STF.
For further details on the procedure, please refer t [...truncated...]
Author: Ottavia M. Epifania [aut, cre] ,
Pasquale Anselmi [ctb],
Egidio Robusto [ctb],
Livio Finos [ctb]
Maintainer: Ottavia M. Epifania <ottavia.epifania@unitn.it>
Diff between shortIRT versions 0.1.4 dated 2025-09-08 and 1.0.0 dated 2026-01-27
shortIRT-0.1.4/shortIRT/R/bp.R |only shortIRT-0.1.4/shortIRT/R/change_names.R |only shortIRT-0.1.4/shortIRT/R/cut_borders.R |only shortIRT-0.1.4/shortIRT/R/diff_theta.R |only shortIRT-0.1.4/shortIRT/R/eip.R |only shortIRT-0.1.4/shortIRT/R/plot_difference.R |only shortIRT-0.1.4/shortIRT/R/plot_tif.R |only shortIRT-0.1.4/shortIRT/R/uip.R |only shortIRT-0.1.4/shortIRT/man/change_names.Rd |only shortIRT-0.1.4/shortIRT/man/cut_borders.Rd |only shortIRT-0.1.4/shortIRT/man/diff_theta.Rd |only shortIRT-0.1.4/shortIRT/man/eip.Rd |only shortIRT-0.1.4/shortIRT/man/plot_difference.Rd |only shortIRT-0.1.4/shortIRT/man/plot_tif.Rd |only shortIRT-0.1.4/shortIRT/man/uip.Rd |only shortIRT-0.1.4/shortIRT/tests/testthat/test-bp.R |only shortIRT-0.1.4/shortIRT/tests/testthat/test-change_names.R |only shortIRT-0.1.4/shortIRT/tests/testthat/test-diff_theta.R |only shortIRT-0.1.4/shortIRT/tests/testthat/test-eip.R |only shortIRT-0.1.4/shortIRT/tests/testthat/test-uip.R |only shortIRT-1.0.0/shortIRT/DESCRIPTION | 38 ++-- shortIRT-1.0.0/shortIRT/MD5 | 64 ++++--- shortIRT-1.0.0/shortIRT/NAMESPACE | 28 ++- shortIRT-1.0.0/shortIRT/NEWS.md | 6 shortIRT-1.0.0/shortIRT/R/IRT.R |only shortIRT-1.0.0/shortIRT/R/bench.R |only shortIRT-1.0.0/shortIRT/R/define_targets.R |only shortIRT-1.0.0/shortIRT/R/irt_estimate.R |only shortIRT-1.0.0/shortIRT/R/item_info.R |only shortIRT-1.0.0/shortIRT/R/plot.bench.R |only shortIRT-1.0.0/shortIRT/R/plot.iifs.R |only shortIRT-1.0.0/shortIRT/R/plot.theta_target.R |only shortIRT-1.0.0/shortIRT/R/plot.tif.R |only shortIRT-1.0.0/shortIRT/R/summary.bench.R |only shortIRT-1.0.0/shortIRT/R/summary.theta_target.R |only shortIRT-1.0.0/shortIRT/R/theta_target.R |only shortIRT-1.0.0/shortIRT/README.md | 97 ----------- shortIRT-1.0.0/shortIRT/man/IRT.Rd |only shortIRT-1.0.0/shortIRT/man/bench.Rd | 85 +++++---- shortIRT-1.0.0/shortIRT/man/define_targets.Rd |only shortIRT-1.0.0/shortIRT/man/i_info.Rd |only shortIRT-1.0.0/shortIRT/man/irt_estimate.Rd |only shortIRT-1.0.0/shortIRT/man/item_info.Rd |only shortIRT-1.0.0/shortIRT/man/logLik_theta.Rd |only shortIRT-1.0.0/shortIRT/man/mpirt.Rd |only shortIRT-1.0.0/shortIRT/man/obsirt.Rd |only shortIRT-1.0.0/shortIRT/man/plot.bench.Rd |only shortIRT-1.0.0/shortIRT/man/plot.iifs.Rd |only shortIRT-1.0.0/shortIRT/man/plot.theta_target.Rd |only shortIRT-1.0.0/shortIRT/man/plot.tif.Rd |only shortIRT-1.0.0/shortIRT/man/summary.bench.Rd |only shortIRT-1.0.0/shortIRT/man/summary.theta_target.Rd |only shortIRT-1.0.0/shortIRT/man/theta_target.Rd |only shortIRT-1.0.0/shortIRT/man/tif.Rd |only shortIRT-1.0.0/shortIRT/tests/testthat/test-IRT.R |only shortIRT-1.0.0/shortIRT/tests/testthat/test-bench.R |only shortIRT-1.0.0/shortIRT/tests/testthat/test-define_targets.R |only shortIRT-1.0.0/shortIRT/tests/testthat/test-irt_estimate.R |only shortIRT-1.0.0/shortIRT/tests/testthat/test-item_info.R |only shortIRT-1.0.0/shortIRT/tests/testthat/test-theta_target.R |only 60 files changed, 134 insertions(+), 184 deletions(-)
Title: Organic Mass Spectrometry
Description: Organic/biological mass spectrometry data analysis.
Author: Nathan Dodder [cre, aut, cph],
Katharine Mullen [ctb]
Maintainer: Nathan Dodder <ndodder@sdsu.edu>
Diff between OrgMassSpecR versions 0.5-3 dated 2017-08-13 and 0.5-4 dated 2026-01-27
DESCRIPTION | 14 LICENSE | 2 MD5 | 26 - build/vignette.rds |binary data/example.sequence.rda |binary inst/NEWS.Rd | 8 inst/doc/OrgMassSpecR-examples.R | 22 inst/doc/OrgMassSpecR-examples.html | 804 ++++++++++++++++++++++-------------- man/Digest.Rd | 2 man/FragmentPeptide.Rd | 4 man/IsotopicDistribution.Rd | 2 man/IsotopicDistributionHDX.Rd | 2 man/IsotopicDistributionN.Rd | 2 man/MonoisotopicMass.Rd | 3 14 files changed, 551 insertions(+), 340 deletions(-)
Title: Toolkit for Analysis of Genomic Data
Description: A toolkit for analysis of genomic data. The 'misha' package
implements an efficient data structure for storing genomic data, and
provides a set of functions for data extraction, manipulation and
analysis. Some of the 2D genome algorithms were described in Yaffe and Tanay
(2011) <doi:10.1038/ng.947>.
Author: Misha Hoichman [aut],
Aviezer Lifshitz [aut, cre],
Eitan Yaffe [aut],
Amos Tanay [aut],
Weizmann Institute of Science [cph]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>
Diff between misha versions 5.3.2 dated 2025-12-14 and 5.4.0 dated 2026-01-27
misha-5.3.2/misha/tests/testthat/test-db-cache-updates.R |only misha-5.4.0/misha/DESCRIPTION | 10 misha-5.4.0/misha/MD5 | 191 ++-- misha-5.4.0/misha/NAMESPACE | 26 misha-5.4.0/misha/NEWS.md | 44 misha-5.4.0/misha/R/compute-analysis.R | 48 - misha-5.4.0/misha/R/compute-core.R | 181 +++- misha-5.4.0/misha/R/compute-distribution.R | 85 - misha-5.4.0/misha/R/compute-utils.R | 39 misha-5.4.0/misha/R/config-defaults.R |only misha-5.4.0/misha/R/dataset.R |only misha-5.4.0/misha/R/db-cache.R | 410 ++++++++- misha-5.4.0/misha/R/db-dir.R | 3 misha-5.4.0/misha/R/db-management.R | 323 ++++++- misha-5.4.0/misha/R/db-root.R | 178 +++ misha-5.4.0/misha/R/intervals-bigset.R | 8 misha-5.4.0/misha/R/intervals-iterator.R | 41 misha-5.4.0/misha/R/intervals-load-save.R | 12 misha-5.4.0/misha/R/intervals-management.R | 145 ++- misha-5.4.0/misha/R/intervals-operations.R | 71 + misha-5.4.0/misha/R/misha-package.R | 27 misha-5.4.0/misha/R/sequence.R | 57 + misha-5.4.0/misha/R/synth.R |only misha-5.4.0/misha/R/track-2d.R | 37 misha-5.4.0/misha/R/track-array.R | 8 misha-5.4.0/misha/R/track-create.R | 43 misha-5.4.0/misha/R/track-import.R | 21 misha-5.4.0/misha/R/track-liftover.R | 9 misha-5.4.0/misha/R/track-management.R | 326 +++++++ misha-5.4.0/misha/R/track-modify.R | 16 misha-5.4.0/misha/R/utils.R | 9 misha-5.4.0/misha/R/vtrack.R | 361 ++++---- misha-5.4.0/misha/inst/WORDLIST | 20 misha-5.4.0/misha/inst/doc/Manual.R | 152 +++ misha-5.4.0/misha/inst/doc/Manual.Rmd | 250 +++++ misha-5.4.0/misha/inst/doc/Manual.html | 362 ++++++-- misha-5.4.0/misha/man/dot-misha.Rd | 2 misha-5.4.0/misha/man/gcor.Rd |only misha-5.4.0/misha/man/gdataset.example_path.Rd |only misha-5.4.0/misha/man/gdataset.info.Rd |only misha-5.4.0/misha/man/gdataset.load.Rd |only misha-5.4.0/misha/man/gdataset.ls.Rd |only misha-5.4.0/misha/man/gdataset.save.Rd |only misha-5.4.0/misha/man/gdataset.unload.Rd |only misha-5.4.0/misha/man/gdb.create_linked.Rd |only misha-5.4.0/misha/man/gdir.cd.Rd | 1 misha-5.4.0/misha/man/gdist.Rd | 10 misha-5.4.0/misha/man/gintervals.dataset.Rd |only misha-5.4.0/misha/man/gintervals.dbs.Rd |only misha-5.4.0/misha/man/gintervals.ls.Rd | 9 misha-5.4.0/misha/man/gintervals.normalize.Rd | 25 misha-5.4.0/misha/man/gintervals.rm.Rd | 8 misha-5.4.0/misha/man/giterator.intervals.Rd | 24 misha-5.4.0/misha/man/gseq.kmer.dist.Rd |only misha-5.4.0/misha/man/gsynth.bin_map.Rd |only misha-5.4.0/misha/man/gsynth.load.Rd |only misha-5.4.0/misha/man/gsynth.random.Rd |only misha-5.4.0/misha/man/gsynth.replace_kmer.Rd |only misha-5.4.0/misha/man/gsynth.sample.Rd |only misha-5.4.0/misha/man/gsynth.save.Rd |only misha-5.4.0/misha/man/gsynth.train.Rd |only misha-5.4.0/misha/man/gtrack.2d.create.Rd | 5 misha-5.4.0/misha/man/gtrack.copy.Rd |only misha-5.4.0/misha/man/gtrack.create.Rd | 5 misha-5.4.0/misha/man/gtrack.create_sparse.Rd | 5 misha-5.4.0/misha/man/gtrack.dataset.Rd |only misha-5.4.0/misha/man/gtrack.dbs.Rd |only misha-5.4.0/misha/man/gtrack.import.Rd | 5 misha-5.4.0/misha/man/gtrack.ls.Rd | 9 misha-5.4.0/misha/man/gtrack.mv.Rd |only misha-5.4.0/misha/man/gtrack.rm.Rd | 5 misha-5.4.0/misha/man/misha-package.Rd | 23 misha-5.4.0/misha/man/print.gsynth.model.Rd |only misha-5.4.0/misha/src/ConfigurationDefaults.h |only misha-5.4.0/misha/src/ConfigurationManager.cpp | 62 - misha-5.4.0/misha/src/ConfigurationManager.h | 5 misha-5.4.0/misha/src/GIntervals.cpp | 116 +- misha-5.4.0/misha/src/GTrackLiftover.cpp | 35 misha-5.4.0/misha/src/GenomeIntervalUtils.cpp | 59 - misha-5.4.0/misha/src/GenomeIteratorIntervals.cpp | 92 +- misha-5.4.0/misha/src/GenomeKmerDist.cpp |only misha-5.4.0/misha/src/GenomeSynthReplace.cpp |only misha-5.4.0/misha/src/GenomeSynthSample.cpp |only misha-5.4.0/misha/src/GenomeSynthTrain.cpp |only misha-5.4.0/misha/src/GenomeTrackApply.cpp | 4 misha-5.4.0/misha/src/GenomeTrackBinnedTransform.cpp | 6 misha-5.4.0/misha/src/GenomeTrackCor.cpp |only misha-5.4.0/misha/src/GenomeTrackExtract.cpp | 147 ++- misha-5.4.0/misha/src/GenomeTrackFixedBin.cpp | 54 + misha-5.4.0/misha/src/GenomeTrackFixedBin.h | 5 misha-5.4.0/misha/src/GenomeTrackQuantiles.cpp | 25 misha-5.4.0/misha/src/GenomeTrackScreener.cpp | 146 ++- misha-5.4.0/misha/src/GenomeTrackSparse.cpp | 59 + misha-5.4.0/misha/src/MaskUtils.h |only misha-5.4.0/misha/src/StratifiedMarkovModel.cpp |only misha-5.4.0/misha/src/StratifiedMarkovModel.h |only misha-5.4.0/misha/src/TrackExpressionIntervalRelativeBinIterator.cpp |only misha-5.4.0/misha/src/TrackExpressionIntervalRelativeBinIterator.h |only misha-5.4.0/misha/src/TrackExpressionVars.cpp | 51 - misha-5.4.0/misha/src/TrackExpressionVars.h | 6 misha-5.4.0/misha/src/misha-init.cpp | 24 misha-5.4.0/misha/src/rdbinterval.cpp | 80 + misha-5.4.0/misha/src/rdbinterval.h | 12 misha-5.4.0/misha/src/rdbutils.cpp | 54 + misha-5.4.0/misha/tests/testthat/helper-test_db.R | 28 misha-5.4.0/misha/tests/testthat/test-dataset.R |only misha-5.4.0/misha/tests/testthat/test-gcor.R |only misha-5.4.0/misha/tests/testthat/test-gdist.R | 33 misha-5.4.0/misha/tests/testthat/test-gintervals-2d-indexed.R | 2 misha-5.4.0/misha/tests/testthat/test-gintervals.normalize.R | 192 ++++ misha-5.4.0/misha/tests/testthat/test-giterator.intervals-relative.R |only misha-5.4.0/misha/tests/testthat/test-gsynth-parallel-helper.R |only misha-5.4.0/misha/tests/testthat/test-gsynth.R |only misha-5.4.0/misha/tests/testthat/test-gtrack-format-conversion.R | 3 misha-5.4.0/misha/tests/testthat/test-gtrack-multicontig.R | 3 misha-5.4.0/misha/tests/testthat/test-gtrack.liftover-sparse-overlap-merge.R |only misha-5.4.0/misha/tests/testthat/test-multi-db.R |only misha-5.4.0/misha/tests/testthat/test-sequence.R | 451 ++++++++++ misha-5.4.0/misha/vignettes/Manual.Rmd | 250 +++++ 119 files changed, 4653 insertions(+), 1000 deletions(-)
Title: Guarded Resampling Workflows for Safe and Automated Machine
Learning in R
Description: Provides a guarded resampling workflow for training and evaluating machine-learning models.
When the guarded resampling path is used, preprocessing and model fitting are re-estimated within
each resampling split to reduce leakage risk. Supports multiple resampling schemes, integrates
with established engines in the 'tidymodels' ecosystem, and aims to improve evaluation reliability by
coordinating preprocessing, fitting, and evaluation within supported workflows. Offers a lightweight
AutoML-style workflow by automating model training, resampling, and tuning across multiple algorithms,
while keeping evaluation design explicit and user-controlled.
Author: Selcuk Korkmaz [aut, cre] ,
Dincer Goksuluk [aut] ,
Eda Karaismailoglu [aut]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between fastml versions 0.7.6 dated 2026-01-10 and 0.7.7 dated 2026-01-27
fastml-0.7.6/fastml/man/fastml_guard_detect_full_analysis.Rd |only fastml-0.7.6/fastml/tests/testthat/Rplots.pdf |only fastml-0.7.7/fastml/DESCRIPTION | 27 fastml-0.7.7/fastml/MD5 | 150 - fastml-0.7.7/fastml/NAMESPACE | 28 fastml-0.7.7/fastml/NEWS.md | 31 fastml-0.7.7/fastml/R/counterfactual_explain.R | 22 fastml-0.7.7/fastml/R/defaults_registry.R |only fastml-0.7.7/fastml/R/engine_helpers.R | 159 + fastml-0.7.7/fastml/R/evaluate_models.R | 40 fastml-0.7.7/fastml/R/explain_ale.R | 57 fastml-0.7.7/fastml/R/explain_dalex.R | 332 ++ fastml-0.7.7/fastml/R/explain_lime.R | 87 fastml-0.7.7/fastml/R/explain_stability.R |only fastml-0.7.7/fastml/R/explainer_helpers.R | 106 fastml-0.7.7/fastml/R/fastexplain.R | 49 fastml-0.7.7/fastml/R/fastexplore.R | 2 fastml-0.7.7/fastml/R/fastml.R | 711 ++++- fastml-0.7.7/fastml/R/interaction_strength.R | 40 fastml-0.7.7/fastml/R/model_selection_helpers.R | 160 - fastml-0.7.7/fastml/R/parallel_utils.R |only fastml-0.7.7/fastml/R/params_helpers.R | 76 fastml-0.7.7/fastml/R/plot.fastml.R | 82 fastml-0.7.7/fastml/R/plot_ice.R | 174 + fastml-0.7.7/fastml/R/predict.fastml.R | 18 fastml-0.7.7/fastml/R/process_model.R | 683 ++++- fastml-0.7.7/fastml/R/process_model_helpers.R | 854 +++++++ fastml-0.7.7/fastml/R/resampling_guard.R | 222 + fastml-0.7.7/fastml/R/sanitize.R | 4 fastml-0.7.7/fastml/R/security_guards.R | 3 fastml-0.7.7/fastml/R/summary.fastml.R | 299 ++ fastml-0.7.7/fastml/R/surrogate_tree.R | 40 fastml-0.7.7/fastml/R/survival_utils.R | 103 fastml-0.7.7/fastml/R/train_models.R | 1199 ++++++++-- fastml-0.7.7/fastml/R/tuning_config.R |only fastml-0.7.7/fastml/R/zzz_globals.R | 25 fastml-0.7.7/fastml/README.md | 16 fastml-0.7.7/fastml/man/compare_defaults.Rd |only fastml-0.7.7/fastml/man/compute_ibrier.Rd | 18 fastml-0.7.7/fastml/man/counterfactual_explain.Rd | 4 fastml-0.7.7/fastml/man/defaults_registry.Rd |only fastml-0.7.7/fastml/man/dot-fastml_warned_defaults.Rd |only fastml-0.7.7/fastml/man/estimate_tuning_time.Rd |only fastml-0.7.7/fastml/man/explain_ale.Rd | 4 fastml-0.7.7/fastml/man/explain_dalex.Rd | 8 fastml-0.7.7/fastml/man/explain_lime.Rd | 21 fastml-0.7.7/fastml/man/explain_stability.Rd |only fastml-0.7.7/fastml/man/fastexplain.Rd | 25 fastml-0.7.7/fastml/man/fastml.Rd | 155 + fastml-0.7.7/fastml/man/fastml_compute_holdout_results.Rd | 22 fastml-0.7.7/fastml/man/fastml_guard_validate_indices.Rd |only fastml-0.7.7/fastml/man/fastml_prepare_explainer_inputs.Rd | 7 fastml-0.7.7/fastml/man/flatten_and_rename_models.Rd | 10 fastml-0.7.7/fastml/man/format_default_override_warning.Rd |only fastml-0.7.7/fastml/man/get_best_model_idx.Rd | 14 fastml-0.7.7/fastml/man/get_best_workflows.Rd | 10 fastml-0.7.7/fastml/man/get_default_differences.Rd |only fastml-0.7.7/fastml/man/get_default_params_with_warnings.Rd |only fastml-0.7.7/fastml/man/get_expanded_tune_params.Rd |only fastml-0.7.7/fastml/man/get_parsnip_default_engine.Rd |only fastml-0.7.7/fastml/man/get_parsnip_default_params.Rd |only fastml-0.7.7/fastml/man/get_tuning_complexity.Rd |only fastml-0.7.7/fastml/man/get_tuning_params_for_complexity.Rd |only fastml-0.7.7/fastml/man/interaction_strength.Rd | 4 fastml-0.7.7/fastml/man/plot.fastml_stability.Rd |only fastml-0.7.7/fastml/man/plot_ice.Rd | 8 fastml-0.7.7/fastml/man/print.fastml_stability.Rd |only fastml-0.7.7/fastml/man/print_default_differences.Rd |only fastml-0.7.7/fastml/man/print_tuning_presets.Rd |only fastml-0.7.7/fastml/man/process_model.Rd | 24 fastml-0.7.7/fastml/man/recommend_tuning_config.Rd |only fastml-0.7.7/fastml/man/reset_default_warnings.Rd |only fastml-0.7.7/fastml/man/resolve_positive_class.Rd |only fastml-0.7.7/fastml/man/surrogate_tree.Rd | 4 fastml-0.7.7/fastml/man/train_models.Rd | 57 fastml-0.7.7/fastml/man/tuning_config.Rd |only fastml-0.7.7/fastml/man/validate_defaults_registry.Rd |only fastml-0.7.7/fastml/man/warn_default_override.Rd |only fastml-0.7.7/fastml/tests/testthat/test-custom-metric-holdout.R | 1 fastml-0.7.7/fastml/tests/testthat/test-defaults-registry.R |only fastml-0.7.7/fastml/tests/testthat/test-fastexplain.R | 6 fastml-0.7.7/fastml/tests/testthat/test-fastexplore.R |only fastml-0.7.7/fastml/tests/testthat/test-fastml-edge-cases.R |only fastml-0.7.7/fastml/tests/testthat/test-fastml-workflows.R | 4 fastml-0.7.7/fastml/tests/testthat/test-fastml.R | 206 - fastml-0.7.7/fastml/tests/testthat/test-interaction-strength.R |only fastml-0.7.7/fastml/tests/testthat/test-plot-ice.R |only fastml-0.7.7/fastml/tests/testthat/test-plot.R |only fastml-0.7.7/fastml/tests/testthat/test-predict.R |only fastml-0.7.7/fastml/tests/testthat/test-resampling-guard.R |only fastml-0.7.7/fastml/tests/testthat/test-resampling.R | 351 +- fastml-0.7.7/fastml/tests/testthat/test-roc-auc.R |only fastml-0.7.7/fastml/tests/testthat/test-sanitize.R |only fastml-0.7.7/fastml/tests/testthat/test-save-load-model.R |only fastml-0.7.7/fastml/tests/testthat/test-summary.R |only fastml-0.7.7/fastml/tests/testthat/test-surrogate-tree.R |only fastml-0.7.7/fastml/tests/testthat/test-survival.R | 15 fastml-0.7.7/fastml/tests/testthat/test-utility-functions.R |only 98 files changed, 5641 insertions(+), 1136 deletions(-)
Title: Complete Stochastic Modelling Solution
Description: Makes univariate, multivariate, or random fields simulations precise and simple. Just select the desired time series or random fields’ properties and it will do the rest. CoSMoS is based on the framework described in Papalexiou (2018, <doi:10.1016/j.advwatres.2018.02.013>), extended for random fields in Papalexiou and Serinaldi (2020, <doi:10.1029/2019WR026331>), and further advanced in Papalexiou et al. (2021, <doi:10.1029/2020WR029466>) to allow fine-scale space-time simulation of storms (or even cyclone-mimicking fields).
Author: Simon Michael Papalexiou [aut],
Francesco Serinaldi [aut],
Filip Strnad [aut],
Yannis Markonis [aut],
Kevin Shook [ctb, cre]
Maintainer: Kevin Shook <kshook@kshook.ca>
Diff between CoSMoS versions 2.1.1 dated 2025-08-23 and 2.1.2 dated 2026-01-27
DESCRIPTION | 14 +++---- MD5 | 8 ++-- inst/doc/vignette.Rmd | 2 - inst/doc/vignette.html | 91 ++++++++++++++++++++++++------------------------- vignettes/vignette.Rmd | 2 - 5 files changed, 59 insertions(+), 58 deletions(-)
More information about rjd3tramoseats at CRAN
Permanent link
Title: Well-Known Locations in R
Description: Makes it easy to find global administrative boundaries from
countries to cities using readable, 'chainable' R syntax. Fetches geometries
from Overture Maps Foundation data. Ported from <https://github.com/wherobots/wkls>.
Author: Ted Banken [aut, cre]
Maintainer: Ted Banken <tedbanken@gmail.com>
Diff between wklsr versions 0.2.5 dated 2026-01-19 and 0.2.6 dated 2026-01-27
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/core.R | 31 +++++++++++++++++++++++++------ 3 files changed, 30 insertions(+), 11 deletions(-)
More information about GeometricMorphometricsMix at CRAN
Permanent link
Title: Flexible Non-Linear Least Square Model Fitting
Description: Provides tools for flexible non-linear least squares model fitting using general-purpose optimization techniques. The package supports a variety of optimization algorithms, including those provided by the 'optimx' package, making it suitable for handling complex non-linear models. Features include parallel processing support via the 'future' and 'foreach' packages, comprehensive model diagnostics, and visualization capabilities. Implements methods described in Nash and Varadhan (2011, <doi:10.18637/jss.v043.i09>).
Author: Johan Aparicio [cre, aut],
Jeffrey Endelman [aut],
University of Wisconsin Madison [cph]
Maintainer: Johan Aparicio <aparicioarce@wisc.edu>
Diff between flexFitR versions 1.2.1 dated 2025-11-04 and 1.2.2 dated 2026-01-27
flexFitR-1.2.1/flexFitR/man/fn_lin_pl_lin2.Rd |only flexFitR-1.2.2/flexFitR/DESCRIPTION | 6 flexFitR-1.2.2/flexFitR/MD5 | 30 +-- flexFitR-1.2.2/flexFitR/NAMESPACE | 4 flexFitR-1.2.2/flexFitR/NEWS.md | 6 flexFitR-1.2.2/flexFitR/R/13_inverse_predict.R | 30 +++ flexFitR-1.2.2/flexFitR/R/14_tangent.R | 12 + flexFitR-1.2.2/flexFitR/R/99_growth_curves.R | 151 ++++++++++++++++- flexFitR-1.2.2/flexFitR/inst/doc/canopy-model.html | 2 flexFitR-1.2.2/flexFitR/inst/doc/how_to_start.html | 8 flexFitR-1.2.2/flexFitR/inst/doc/maturity-model.R | 2 flexFitR-1.2.2/flexFitR/inst/doc/maturity-model.Rmd | 2 flexFitR-1.2.2/flexFitR/inst/doc/maturity-model.html | 50 ++--- flexFitR-1.2.2/flexFitR/inst/doc/predicted_values.html | 4 flexFitR-1.2.2/flexFitR/man/fn_lll.Rd |only flexFitR-1.2.2/flexFitR/man/fn_lpl.Rd |only flexFitR-1.2.2/flexFitR/man/fn_qpl.Rd |only flexFitR-1.2.2/flexFitR/vignettes/maturity-model.Rmd | 2 18 files changed, 247 insertions(+), 62 deletions(-)
Title: Bivariate Automatic Analysis
Description: Simplify bivariate and regression analyses by automating
result generation, including summary tables, statistical tests, and
customizable graphs. It supports tests for continuous and dichotomous
data, as well as stepwise regression for linear, logistic, and Firth
penalized logistic models. While not a substitute for tailored
analysis, 'BiVariAn' accelerates workflows and is expanding features
like multilingual interpretations of results.The methods for selecting
significant statistical tests, as well as the predictor selection in
prediction functions, can be referenced in the works of Marc Kery
(2003) <doi:10.1890/0012-9623(2003)84[92:NORDIG]2.0.CO;2> and Rainer
Puhr (2017) <doi:10.1002/sim.7273>.
Author: Jose Andres Flores-Garcia [cre, aut, cph] ,
Antonio Augusto Gordillo-Moscoso [aut] ,
Jhoselin Marian Castro-Rodriguez [aut]
Maintainer: Jose Andres Flores-Garcia <andres.flores@uaslp.mx>
Diff between BiVariAn versions 1.0.2 dated 2025-09-16 and 1.0.3 dated 2026-01-27
DESCRIPTION | 8 MD5 | 80 ++-- NEWS.md | 18 - R/auto_pie_categ.R | 4 R/import-standalone-purrr.R | 482 +++++++++++++-------------- README.md | 4 build/partial.rdb |binary build/vignette.rds |binary inst/doc/bivarian-description.html | 4 man/BiVariAn-package.Rd | 62 +-- man/auto_bar_categ.Rd | 126 +++---- man/auto_bar_cont.Rd | 122 +++--- man/auto_bp_cont.Rd | 106 ++--- man/auto_corr_cont.Rd | 106 ++--- man/auto_dens_cont.Rd | 140 +++---- man/auto_pie_categ.Rd | 112 +++--- man/auto_shapiro_raw.Rd | 50 +- man/auto_viol_cont.Rd | 110 +++--- man/continuous_2g.Rd | 98 ++--- man/continuous_2g_pair.Rd | 104 ++--- man/continuous_corr_test.Rd | 134 +++---- man/continuous_multg.Rd | 58 +-- man/dichotomous_2k_2sid.Rd | 112 +++--- man/encode_factors.Rd | 82 ++-- man/figures/lifecycle-deprecated.svg | 42 +- man/figures/lifecycle-experimental.svg | 42 +- man/figures/lifecycle-stable.svg | 58 +-- man/figures/lifecycle-superseded.svg | 42 +- man/logistf_summary.Rd | 74 ++-- man/ss_multreg.Rd | 78 ++-- man/step_bw_firth.Rd | 144 ++++---- man/step_bw_p.Rd | 122 +++--- man/theme_serene.Rd | 102 ++--- man/theme_serene_void.Rd | 104 ++--- tests/testthat/_snaps/auto_shapiro_raw.md | 16 tests/testthat/_snaps/continuous_2g.md | 42 +- tests/testthat/_snaps/continuous_2g_pair.md | 18 - tests/testthat/_snaps/dichotomous_2k_2sid.md | 56 +-- tests/testthat/_snaps/ss_multreg.md | 24 - tests/testthat/_snaps/step_bw_firth.md | 10 tests/testthat/test-auto_bp_cont_wlabels.R | 6 41 files changed, 1554 insertions(+), 1548 deletions(-)
Title: Multivariate Probability Distributions, Statistical Divergence
Description: Multivariate generalized Gaussian distribution,
Multivariate Cauchy distribution,
Multivariate t distribution.
Distance between two distributions (see N. Bouhlel and A. Dziri (2019): <doi:10.1109/LSP.2019.2915000>,
N. Bouhlel and D. Rousseau (2022): <doi:10.3390/e24060838>,
N. Bouhlel and D. Rousseau (2023): <doi:10.1109/LSP.2023.3324594>).
Manipulation of these multivariate probability distributions.
This package replaces 'mggd', 'mcauchyd' and 'mstudentd'.
Author: Pierre Santagostini [aut, cre],
Nizar Bouhlel [aut]
Maintainer: Pierre Santagostini <pierre.santagostini@institut-agro.fr>
Diff between multvardiv versions 1.0.11 dated 2025-06-12 and 1.0.14 dated 2026-01-27
DESCRIPTION | 9 +++++---- MD5 | 13 +++++++------ NEWS.md |only R/diststudent.R | 23 ++++++++++++++++++++++- R/dmtd.R | 30 +++++++++++++++++++----------- build/partial.rdb |binary man/diststudent.Rd | 21 +++++++++++++++++++-- man/dmtd.Rd | 16 +++++++++++----- 8 files changed, 83 insertions(+), 29 deletions(-)
Title: Concordance Correlation Coefficient for Repeated (and
Non-Repeated) Measures
Description: Estimates the Concordance Correlation Coefficient to assess agreement. The scenarios considered are non-repeated measures, non-longitudinal repeated measures (replicates) and longitudinal repeated measures. It also includes the estimation of the one-way intraclass correlation coefficient also known as reliability index. The estimation approaches implemented are variance components and U-statistics approaches. Description of methods can be found in Fleiss (1986) <doi:10.1002/9781118032923> and Carrasco et al. (2013) <doi:10.1016/j.cmpb.2012.09.002>.
Author: Josep Lluis Carrasco [aut, cre],
Gonzalo Peon Pena [aut]
Maintainer: Josep Lluis Carrasco <jlcarrasco@ub.edu>
Diff between cccrm versions 3.0.5 dated 2025-05-07 and 3.0.6 dated 2026-01-27
DESCRIPTION | 10 - MD5 | 6 R/cccUst.R | 416 ++++++++++++++++++++++++++++++++++++------------------ build/partial.rdb |binary 4 files changed, 288 insertions(+), 144 deletions(-)
Title: NA-Aware Defaults for Common R Functions
Description: Provides drop-in replacements for common R functions (mean(), sum(), sd(), min(), etc.) that default to 'na.rm = TRUE' and issue warnings when missing values are removed. It handles some special cases. The table() default is set to 'useNA = ifany'.
Author: Ulrich Atz [aut, cre, cph]
Maintainer: Ulrich Atz <ulrich.atz@unibocconi.it>
Diff between tidyna versions 0.1.2 dated 2026-01-08 and 0.4.0 dated 2026-01-27
DESCRIPTION | 12 +- LICENSE | 2 MD5 | 44 ++++--- NAMESPACE | 3 NEWS.md |only R/aaa-utils.R | 29 +++- R/extrema.R | 214 +++++++++++++++++++++++++++++++----- R/logical.R | 8 + R/row.R | 62 ++++++++-- R/summary.R | 8 + R/tidyna-package.R | 5 R/zzz.R | 32 +++-- README.md | 64 +++++++--- man/extrema-functions.Rd | 38 +++++- man/figures |only man/logical-functions.Rd | 11 + man/row-functions.Rd | 15 +- man/summary-functions.Rd | 23 ++- man/tidyna-package.Rd | 2 tests/testthat/_problems |only tests/testthat/test-all-na-option.R |only tests/testthat/test-extrema.R | 207 ++++++++++++++++++++++++++++++++++ tests/testthat/test-row.R | 10 + 23 files changed, 660 insertions(+), 129 deletions(-)
Title: B-Spline Interpolation and Regression
Description: Build and use B-splines for interpolation and regression.
In case of regression, equality constraints as well as monotonicity
and/or positivity of B-spline weights can be imposed. Moreover,
knot positions can be on regular grid or be part of
optimized parameters too (in addition to the spline weights).
For this end, 'bspline' is able to calculate
Jacobian of basis vectors as function of knot positions. User is provided with
functions calculating spline values at arbitrary points. These
functions can be differentiated and integrated to obtain B-splines calculating
derivatives/integrals at any point. B-splines of this package can
simultaneously operate on a series of curves sharing the same set of
knots. 'bspline' is written with concern about computing
performance that's why the basis and Jacobian calculation is implemented in C++.
The rest is implemented in R but without notable impact on computing speed.
Author: Serguei Sokol [aut, cre]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between bspline versions 2.5.0 dated 2025-05-16 and 2.5.1 dated 2026-01-27
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ inst/unitTests/runit.bspline.R | 4 ++-- 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Credible Visualization for Two-Dimensional Projections of Data
Description: Projections are common dimensionality reduction methods, which represent high-dimensional data in a two-dimensional space. However, when restricting the output space to two dimensions, which results in a two dimensional scatter plot (projection) of the data, low dimensional similarities do not represent high dimensional distances coercively [Thrun, 2018] <DOI: 10.1007/978-3-658-20540-9>. This could lead to a misleading interpretation of the underlying structures [Thrun, 2018]. By means of the 3D topographic map the generalized Umatrix is able to depict errors of these two-dimensional scatter plots. The package is derived from the book of Thrun, M.C.: "Projection Based Clustering through Self-Organization and Swarm Intelligence" (2018) <DOI:10.1007/978-3-658-20540-9> and the main algorithm called simplified self-organizing map for dimensionality reduction methods is published in Thrun, M.C. and Ultsch, A.: "Uncovering High-dimensional Structures of Projections from Dimension [...truncated...]
Author: Quirin Stier [aut, cre] ,
Michael Thrun [aut, cph] ,
The Khronos Group Inc. [cph]
Maintainer: Quirin Stier <Quirin_Stier@gmx.de>
Diff between GeneralizedUmatrixGPU versions 0.1.10 dated 2026-01-14 and 0.1.14 dated 2026-01-27
GeneralizedUmatrixGPU-0.1.10/GeneralizedUmatrixGPU/src/Makevars.win |only GeneralizedUmatrixGPU-0.1.14/GeneralizedUmatrixGPU/DESCRIPTION | 15 +++--- GeneralizedUmatrixGPU-0.1.14/GeneralizedUmatrixGPU/MD5 | 17 +++---- GeneralizedUmatrixGPU-0.1.14/GeneralizedUmatrixGPU/R/GeneralizedUmatrixGPU.R | 16 ++++++ GeneralizedUmatrixGPU-0.1.14/GeneralizedUmatrixGPU/build/partial.rdb |binary GeneralizedUmatrixGPU-0.1.14/GeneralizedUmatrixGPU/cleanup |only GeneralizedUmatrixGPU-0.1.14/GeneralizedUmatrixGPU/cleanup.win |only GeneralizedUmatrixGPU-0.1.14/GeneralizedUmatrixGPU/configure | 24 ++++++---- GeneralizedUmatrixGPU-0.1.14/GeneralizedUmatrixGPU/configure.win | 3 - GeneralizedUmatrixGPU-0.1.14/GeneralizedUmatrixGPU/man/GeneralizedUmatrixGPU-package.Rd | 14 +++-- GeneralizedUmatrixGPU-0.1.14/GeneralizedUmatrixGPU/man/GeneralizedUmatrixGPU.Rd | 13 +---- 11 files changed, 62 insertions(+), 40 deletions(-)
More information about GeneralizedUmatrixGPU at CRAN
Permanent link
Title: Micro-Macro Analysis for Social Networks
Description: Estimates micro effects on macro structures (MEMS) and average micro mediated effects (AMME).
URL: <https://github.com/sduxbury/netmediate>.
BugReports: <https://github.com/sduxbury/netmediate/issues>.
Robins, Garry, Phillipa Pattison, and Jodie Woolcock (2005) <doi:10.1086/427322>.
Snijders, Tom A. B., and Christian E. G. Steglich (2015) <doi:10.1177/0049124113494573>.
Imai, Kosuke, Luke Keele, and Dustin Tingley (2010) <doi:10.1037/a0020761>.
Duxbury, Scott (2023) <doi:10.1177/00811750231209040>.
Duxbury, Scott (2024) <doi:10.1177/00811750231220950>.
Author: Scott Duxbury [aut, cre, cph],
Xin Zhao [ctb]
Maintainer: Scott Duxbury <duxbury@email.unc.edu>
Diff between netmediate versions 1.1.0 dated 2025-04-27 and 1.1.1 dated 2026-01-27
DESCRIPTION | 6 +++--- MD5 | 28 ++++++++++++++-------------- NEWS | 3 ++- R/MEMS_ergm_nonparam.R | 3 +++ R/MEMS_ergm_param.R | 7 +++++++ R/MEMS_glm_nonparam.R | 4 ++++ R/MEMS_glm_param.R | 4 ++++ R/MEMS_pooled_saom.R | 4 ++++ R/MEMS_rem_param.R | 4 ++++ R/MEMS_saom.R | 4 ++++ R/compare_MEMS.R | 3 ++- man/AMME.Rd | 2 +- man/MEMS.Rd | 2 +- man/compare_MEMS.Rd | 7 ++----- man/mediate_MEMS.Rd | 8 +++----- 15 files changed, 58 insertions(+), 31 deletions(-)
Title: Isotonic Boosting Classification Rules
Description: In classification problems a monotone relation between some
predictors and the classes may be assumed. In this package 'isoboost'
we propose new boosting algorithms, based on LogitBoost, that
incorporate this isotonicity information, yielding more accurate
and easily interpretable rules.
Author: David Conde [aut, cre],
Miguel A. Fernandez [aut],
Cristina Rueda [aut],
Bonifacio Salvador [aut]
Maintainer: David Conde <daconrio@gmail.com>
Diff between isoboost versions 1.0.1 dated 2021-05-01 and 1.0.2 dated 2026-01-27
DESCRIPTION | 14 - MD5 | 16 +- NAMESPACE | 3 R/amilb.R | 368 ++++++++++++++++++++++++------------------------ R/asilb.R | 132 ++++++++--------- R/checks.R | 32 ++-- R/csilb.R | 156 ++++++++++---------- inst/CITATION | 16 +- man/isoboost-package.Rd | 6 9 files changed, 372 insertions(+), 371 deletions(-)
Title: Variable Selection for Generalized Linear Mixed Models by
L1-Penalized Estimation
Description: A variable selection approach for generalized linear mixed models by L1-penalized estimation is provided,
see Groll and Tutz (2014) <doi:10.1007/s11222-012-9359-z>.
See also Groll and Tutz (2017) <doi:10.1007/s10985-016-9359-y> for discrete survival models including heterogeneity.
Author: Andreas Groll [aut, cre, cph]
Maintainer: Andreas Groll <groll@statistik.tu-dortmund.de>
Diff between glmmLasso versions 1.6.3 dated 2023-08-23 and 1.6.4 dated 2026-01-27
DESCRIPTION | 17 +++++++++++------ MD5 | 2 +- 2 files changed, 12 insertions(+), 7 deletions(-)
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in Migueles and colleagues (JMPB 2019), and van Hees and colleagues (JApplPhysiol 2014; PLoSONE 2015). The package has been developed and tested for binary data from 'GENEActiv' <https://activinsights.com/>, binary (.gt3x) and .csv-export data from 'Actigraph' <https://theactigraph.com> devices, and binary (.cwa) and .csv-export data from 'Axivity' <https://axivity.com>. These devices are currently widely used in research on human daily physical activity. Further, the package can handle accelerometer data file from any other sensor brand providing that the data is stored in csv format. Also the package allows for external function embedding.
Author: Vincent T van Hees [aut, cre],
Jairo H Migueles [aut] ,
Severine Sabia [ctb],
Matthew R Patterson [ctb],
Zhou Fang [ctb],
Joe Heywood [ctb],
Joan Capdevila Pujol [ctb],
Lena Kushleyeva [ctb],
Mathilde Chen [ctb],
Manasa Yerramalla [ctb],
Patrick Bos [...truncated...]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>
Diff between GGIR versions 3.3-0 dated 2025-09-15 and 3.3-4 dated 2026-01-27
DESCRIPTION | 8 MD5 | 90 ++--- NAMESPACE | 2 NEWS.md | 38 ++ R/GGIR.R | 1 R/HASIB.R | 12 R/HASPT.R | 4 R/check_params.R | 12 R/detectEventBouts.R | 21 - R/g.analyse.perday.R | 9 R/g.analyse.perfile.R | 2 R/g.inspectfile.R | 2 R/g.loadlog.R | 5 R/g.part1.R | 30 + R/g.part2.R | 78 +++- R/g.part3.R | 35 +- R/g.part3_correct_guider.R | 3 R/g.part4.R | 16 R/g.part5.R | 37 +- R/g.part6.R | 35 +- R/g.readaccfile.R | 19 + R/g.report.part2.R | 115 +------ R/g.sib.det.R | 3 R/inspect_binFile_brand.R | 2 R/load_params.R | 5 R/splitRecords.R | 2 build/vignette.rds |binary inst/doc/CutPoints.Rmd | 4 inst/doc/CutPoints.html | 4 inst/doc/GGIRParameters.Rmd | 1 inst/doc/GGIRParameters.html | 474 +++++++++++++++-------------- inst/doc/GGIRoutput.Rmd | 13 inst/doc/GGIRoutput.html | 50 +-- inst/doc/StepCadenceAnalysis.Rmd |only inst/doc/StepCadenceAnalysis.html |only man/GGIR-package.Rd | 4 man/GGIR.Rd | 40 ++ man/g.report.part2.Rd | 5 tests/testthat/test_HASIB.R | 4 tests/testthat/test_chainof5parts.R | 10 tests/testthat/test_detectEventBouts.R | 2 tests/testthat/test_greadaccfile.R | 99 +++--- tests/testthat/test_load_check_params.R | 4 tests/testthat/test_skipAndLogFileErrors.R |only vignettes/CutPoints.Rmd | 4 vignettes/GGIRParameters.Rmd | 1 vignettes/GGIRoutput.Rmd | 13 vignettes/StepCadenceAnalysis.Rmd |only 48 files changed, 764 insertions(+), 554 deletions(-)
Title: Orchestrate Geospatial (Meta)Data Management Workflows and
Manage FAIR Services
Description: An engine to facilitate the orchestration and execution of metadata-driven data management workflows, in compliance with 'FAIR'
(Findable, Accessible, Interoperable and Reusable) data management principles. By means of a pivot metadata model, relying on the 'DublinCore' standard (<https://dublincore.org/>),
a unique source of metadata can be used to operate multiple and inter-connected data management actions. Users can also customise their own workflows by creating specific actions
but the library comes with a set of native actions targeting common geographic information and data management, in particular actions oriented to the publication on the web of metadata
and data resources to provide standard discovery and access services. At first, default actions of the library were meant to focus on providing turn-key actions for geospatial (meta)data:
1) by creating manage geospatial (meta)data complying with 'ISO/TC211' (<https://committee.iso.org/home/tc211>) and 'OGC' (< [...truncated...]
Author: Emmanuel Blondel [aut, cre, cph] ,
Julien, Barde [aut] ,
Wilfried Heintz [aut] ,
Alexandre Bennici [ctb],
Sylvain Poulain [ctb],
Bastien Grasset [ctb],
Mathias Rouan [ctb],
Emilie Lerigoleur [ctb],
Yvan Le Bras [ctb],
Jeroen Ooms [ctb]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between geoflow versions 1.1.0 dated 2025-12-12 and 1.2.0 dated 2026-01-27
DESCRIPTION | 18 ++--- MD5 | 27 +++---- NAMESPACE | 1 NEWS.md | 9 ++ R/geoflow_data.R | 8 ++ R/geoflow_entity.R | 81 +++++++++++++++-------- R/geoflow_utils.R | 26 +++++++ R/geoflow_vocabulary.R | 60 +++++++++++++---- README.md | 6 - inst/actions/geonapi_publish_iso_19139.R | 9 ++ inst/actions/geosapi_publish_ogc_services.R | 12 +++ inst/metadata/dictionary/dictionary_handler_df.R | 2 man/bbox_to_sf.Rd |only man/geoflow_data.Rd | 2 man/geoflow_vocabulary.Rd | 6 + 15 files changed, 202 insertions(+), 65 deletions(-)
Title: Geolocalização De Endereços Brasileiros (Geocoding Brazilian
Addresses)
Description: Método simples e eficiente de geolocalizar dados no Brasil. O
pacote é baseado em conjuntos de dados espaciais abertos de endereços
brasileiros, utilizando como fonte principal o Cadastro Nacional de Endereços
para Fins Estatísticos (CNEFE). O CNEFE é publicado pelo Instituto Brasileiro
de Geografia e Estatística (IBGE), órgão oficial de estatísticas e geografia
do Brasil. (A simple and efficient method for geolocating data in Brazil. The
package is based on open spatial datasets of Brazilian addresses, primarily
using the Cadastro Nacional de Endereços para Fins Estatísticos (CNEFE),
published by the Instituto Brasileiro de Geografia e Estatística (IBGE),
Brazil's official statistics and geography agency.)
Author: Rafael H. M. Pereira [aut, cre] ,
Daniel Herszenhut [aut] ,
Gabriel Garcia de Almeida [aut] ,
Arthur Bazolli [ctb],
Pedro Milreu Cunha [ctb],
ITpS - Instituto Todos pela Saude [fnd],
Ipea - Instituto de Pesquisa Economica Aplicada [cph, fnd]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between geocodebr versions 0.6.0 dated 2026-01-23 and 0.6.1 dated 2026-01-27
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 25 +++++++++++++++++-------- R/cache.R | 2 +- inst/doc/geocode.html | 10 +++++----- inst/doc/geocode_reverso.html | 4 ++-- inst/doc/geocodebr.html | 22 +++++++++++----------- man/geocode.Rd | 4 ++-- tests/tests_rafa/benchmark_20k.R | 1 + tests/tests_rafa/benchmark_reg_adm.R | 13 +++++++++---- tests/testthat/_snaps/definir_campos.md | 16 ++++++++-------- tests/testthat/_snaps/message.md | 14 +++++++------- 12 files changed, 77 insertions(+), 62 deletions(-)
Title: Continuous Time Structural Equation Modelling
Description: Hierarchical continuous (and discrete) time state space modelling, for linear
and nonlinear systems measured by continuous variables, with limited support for
binary data. The subject specific dynamic system is modelled as a stochastic
differential equation (SDE) or difference equation, measurement models are typically multivariate normal factor models.
Linear mixed effects SDE's estimated via maximum likelihood and optimization are the default.
Nonlinearities, (state dependent parameters) and random effects on all parameters
are possible, using either max likelihood / max a posteriori optimization
(with optional importance sampling) or Stan's Hamiltonian Monte Carlo sampling.
See <https://github.com/cdriveraus/ctsem/raw/master/vignettes/hierarchicalmanual.pdf>
for details. See <https://osf.io/preprints/psyarxiv/4q9ex_v2> for a detailed tutorial.
Priors may be used. For the conceptual overview of the hierarchical Bayesian
linear SDE approach,
see <https://www.research [...truncated...]
Author: Charles Driver [aut, cre, cph],
Manuel Voelkle [aut, cph],
Han Oud [aut, cph],
Trustees of Columbia University [cph]
Maintainer: Charles Driver <charles.driver2@uzh.ch>
Diff between ctsem versions 3.10.5 dated 2026-01-20 and 3.10.6 dated 2026-01-27
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/ctCheckFit.R | 29 ++++++++++++++++------------- R/ctKalman.R | 2 +- R/ctStanPlotPost.R | 2 +- R/ctStanPostPredict.R | 7 +++---- R/ctSummarise.R | 2 +- R/stanoptimis.R | 1 + inst/doc/hierarchicalmanual.pdf |binary 9 files changed, 35 insertions(+), 32 deletions(-)
Title: Model Based Clustering for Mixed Data
Description: Model-based clustering of mixed data (i.e. data which consist of
continuous, binary, ordinal or nominal variables) using a parsimonious
mixture of latent Gaussian variable models.
Author: Damien McParland [aut, cre],
Isobel Claire Gormley [aut]
Maintainer: Damien McParland <clustmd.maintainers@gmail.com>
This is a re-admission after prior archival of version 1.2.1 dated 2017-05-08
Diff between clustMD versions 1.2.1 dated 2017-05-08 and 1.2.2 dated 2026-01-27
DESCRIPTION | 13 ++++--- MD5 | 34 ++++++++++---------- NAMESPACE | 1 R/WelcomeMessage.R | 2 - R/clustMD_InternalFunctions.R | 71 ++++++++++++++++++------------------------ R/clustMD_UserFunctions.R | 33 +++++-------------- R/clustMD_UtilityFunctions.R | 2 - man/Byar.Rd | 6 ++- man/E.step.Rd | 21 +++++++++++- man/M.step.Rd | 17 ++++++++-- man/ObsLogLikelihood.Rd | 19 ++++++++++- man/clustMD-package.Rd | 1 man/clustMD.Rd | 18 ++++++++-- man/clustMDparallel.Rd | 19 +++++++++-- man/clustMDparcoord.Rd | 12 +++++-- man/dtmvnom.Rd | 2 - man/z.moments.Rd | 18 +++++++++- man/z.moments_diag.Rd | 17 ++++++++-- 18 files changed, 194 insertions(+), 112 deletions(-)
Title: Compute and Summarize Core Forest Metrics from Field Data
Description: A suite of open-source R functions designed to produce standard
metrics for forest management and ecology from forest inventory data. The
overarching goal is to minimize potential inconsistencies introduced by the
algorithms used to compute and summarize core forest metrics. Learn more
about the purpose of the package and the specific algorithms used in the
package at <https://github.com/kearutherford/BerkeleyForestsAnalytics>.
Author: Kea Rutherford [aut, cre],
John Battles [aut],
Danny Foster [aut],
The Regents of the University of California [cph]
Maintainer: Kea Rutherford <krutherford@berkeley.edu>
Diff between BerkeleyForestsAnalytics versions 2.0.4 dated 2025-01-10 and 3.0.0 dated 2026-01-27
DESCRIPTION | 8 MD5 | 34 NEWS.md | 4 R/data.R | 9836 ++++++++++++++++----------------- R/nsvb_formatting.R | 428 - R/nsvb_tree_bio.R | 6 R/sysdata.rda |binary README.md | 816 +- data/nsvb_demo.rda |binary inst/CITATION | 16 inst/doc/BerkeleyForestsAnalytics.R | 16 inst/doc/BerkeleyForestsAnalytics.Rmd | 1032 +-- inst/doc/BerkeleyForestsAnalytics.html | 3 man/BiomassNSVB.Rd | 9 man/nsvb_demo.Rd | 2 tests/testthat/test-biomass_NSVB.R | 204 tests/testthat/test-validate_NSVB.R | 219 vignettes/BerkeleyForestsAnalytics.Rmd | 1032 +-- 18 files changed, 6897 insertions(+), 6768 deletions(-)
More information about BerkeleyForestsAnalytics at CRAN
Permanent link
Title: Calculate Surface/Image Texture Indexes
Description: Methods for the computation of surface/image texture indices using a geostatistical based approach (Trevisani et al. (2023) <doi:10.1016/j.catena.2023.106927> and Trevisani and Guth (2025) <doi:10.3390/rs17233864>). It provides various functions for the computation of surface texture indices (e.g., omnidirectional roughness and roughness anisotropy), including the ones based on the robust MAD estimator. The kernels included in the software permit also to calculate the surface/image texture indices directly from the input surface (i.e., without de-trending) using increments of order 2 and of order 4. It also provides the new radial roughness index (RRI), representing the improvement of the popular topographic roughness index (TRI). The framework can be easily extended with ad-hoc surface/image texture indices.
Author: Sebastiano Trevisani [aut, cre] ,
Ilich Alexander [ctb] ,
Zakharko Taras [ctb]
Maintainer: Sebastiano Trevisani <strevisani@iuav.it>
Diff between SurfRough versions 0.0.1.1 dated 2025-03-19 and 0.0.1.2 dated 2026-01-27
DESCRIPTION | 18 - MD5 | 67 +++-- NAMESPACE | 12 NEWS |only R/GeostTextureLibrarySharedRoxy.R | 481 +++++++++++++++++++++++++++++++++----- R/RcppExports.R | 20 + R/data.R | 87 ++++++ build |only data/basicKernels.RData |binary inst/tinytest/test_SurfRough.R | 24 + man/CalcMeans.Rd | 2 man/Madscan.Rd | 16 - man/MadscanL.Rd |only man/Meanscan.Rd | 8 man/RRI.Rd | 20 - man/RRIK3.Rd | 12 man/RRIMax.Rd | 10 man/RRIMin.Rd | 10 man/RRIcore.Rd |only man/RRIk4.Rd |only man/TRIbi.Rd |only man/Trik2.Rd | 9 man/Trik2.SpatRaster.Rd | 7 man/Trik2.numeric.Rd | 7 man/circularDispersionGV.Rd | 2 man/circularDispersionNV.Rd | 2 man/iqrST.Rd |only man/k05ck2.Rd | 5 man/k1c.Rd | 3 man/k1ck2.Rd | 5 man/k1ck4.Rd |only man/k2c.Rd | 3 man/k2ck2.Rd | 5 man/k4c.Rd | 5 man/k6c.Rd | 5 man/k8c.Rd | 5 man/stdST.Rd |only src/RcppExports.cpp | 70 +++++ src/rri.cpp | 167 +++++++++++++ 39 files changed, 920 insertions(+), 167 deletions(-)
Title: Building and Estimating Structural Equation Models
Description: A powerful, easy to use syntax for specifying and estimating complex
Structural Equation Models. Models can be estimated using Partial
Least Squares Path Modeling or Covariance-Based Structural Equation
Modeling or covariance based Confirmatory Factor Analysis (Ray, Danks, and Valdez 2021 <doi:10.2139/ssrn.3900621>).
Author: Soumya Ray [aut, ths],
Nicholas Patrick Danks [aut, cre],
Andre Calero Valdez [aut],
Juan Manuel Velasquez Estrada [ctb],
James Uanhoro [ctb],
Johannes Nakayama [ctb],
Lilian Koyan [ctb],
Laura Burbach [ctb],
Arturo Heynar Cano Bejar [ctb],
Susanne A [...truncated...]
Maintainer: Nicholas Patrick Danks <nicholasdanks@hotmail.com>
Diff between seminr versions 2.3.7 dated 2025-09-03 and 2.4.0 dated 2026-01-27
seminr-2.3.7/seminr/demo/seminr-primer-chap2.R |only seminr-2.3.7/seminr/demo/seminr-primer-chap3.R |only seminr-2.3.7/seminr/demo/seminr-primer-chap4.R |only seminr-2.3.7/seminr/demo/seminr-primer-chap5.R |only seminr-2.3.7/seminr/demo/seminr-primer-chap6.R |only seminr-2.3.7/seminr/demo/seminr-primer-chap7.R |only seminr-2.3.7/seminr/demo/seminr-primer-chap8.R |only seminr-2.3.7/seminr/man/seminr_theme_old.Rd |only seminr-2.4.0/seminr/DESCRIPTION | 8 - seminr-2.4.0/seminr/MD5 | 52 ++++----- seminr-2.4.0/seminr/NAMESPACE | 3 seminr-2.4.0/seminr/R/data.R | 13 -- seminr-2.4.0/seminr/R/evaluate_measurement_model.R | 6 - seminr-2.4.0/seminr/R/library.R | 23 ++++ seminr-2.4.0/seminr/R/plot_results.R | 4 seminr-2.4.0/seminr/R/report_paths_and_intervals.R | 56 +++++++++- seminr-2.4.0/seminr/R/report_summary.R | 10 - seminr-2.4.0/seminr/R/specify_constructs.R | 4 seminr-2.4.0/seminr/R/theme_defaults.R | 2 seminr-2.4.0/seminr/data/corp_rep_data.rda |binary seminr-2.4.0/seminr/demo/00Index | 7 - seminr-2.4.0/seminr/inst/doc/SEMinR.Rmd | 2 seminr-2.4.0/seminr/inst/doc/SEMinR.html | 42 +++---- seminr-2.4.0/seminr/man/corp_rep_data.Rd | 11 - seminr-2.4.0/seminr/man/corp_rep_data2.Rd | 2 seminr-2.4.0/seminr/man/mode_plsc.Rd |only seminr-2.4.0/seminr/man/seminr_theme_academic.Rd |only seminr-2.4.0/seminr/tests/fixtures/V_3_6_0/boot_report_htmt.csv | 14 +- seminr-2.4.0/seminr/tests/testthat/test-consistent-interactions.R | 2 seminr-2.4.0/seminr/tests/testthat/test-plot-utils.R | 40 +++---- seminr-2.4.0/seminr/tests/testthat/test-summary.R | 8 - seminr-2.4.0/seminr/vignettes/SEMinR.Rmd | 2 32 files changed, 177 insertions(+), 134 deletions(-)
Title: Kriging Models using the 'libKriging' Library
Description: Interface to 'libKriging' 'C++' library <https://github.com/libKriging> that should
provide most standard Kriging / Gaussian process regression features
(like in 'DiceKriging', 'kergp' or 'RobustGaSP' packages).
'libKriging' relies on Armadillo linear algebra library (Apache 2 license) by Conrad Sanderson,
'lbfgsb_cpp' is a 'C++' port around by Pascal Have of 'lbfgsb' library (BSD-3 license) by
Ciyou Zhu, Richard Byrd, Jorge Nocedal and Jose Luis Morales used for hyperparameters optimization.
Author: Yann Richet [aut, cre] ,
Pascal Have [aut],
Yves Deville [aut],
Conrad Sanderson [ctb],
Ciyou Zhu [ctb],
Richard Byrd [ctb],
Jorge Nocedal [ctb],
Jose Luis Morales [ctb],
Mike Smith [ctb]
Maintainer: Yann Richet <yann.richet@asnr.fr>
This is a re-admission after prior archival of version 0.9-2.3 dated 2025-10-17
Diff between rlibkriging versions 0.9-2.3 dated 2025-10-17 and 0.9-3 dated 2026-01-27
rlibkriging-0.9-2.3/rlibkriging/src/libK/armadillo/cmake_aux/Modules/ARMA_FindSuperLU5.cmake |only rlibkriging-0.9-2.3/rlibkriging/src/libK/armadillo/include/armadillo_bits/cond_rel_bones.hpp |only rlibkriging-0.9-2.3/rlibkriging/src/libK/armadillo/include/armadillo_bits/cond_rel_meat.hpp |only rlibkriging-0.9-2.3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_eps.hpp |only rlibkriging-0.9-2.3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_shift.hpp |only rlibkriging-0.9-2.3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_misc_bones.hpp |only rlibkriging-0.9-2.3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_misc_meat.hpp |only rlibkriging-0.9-2.3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_shift_bones.hpp |only rlibkriging-0.9-2.3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_shift_meat.hpp |only rlibkriging-0.9-2.3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_shift_bones.hpp |only rlibkriging-0.9-2.3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_shift_meat.hpp |only rlibkriging-0.9-2.3/rlibkriging/src/libK/src/lib/CacheFunction.cpp |only rlibkriging-0.9-2.3/rlibkriging/src/libK/src/lib/include/libKriging/CacheFunction.hpp |only rlibkriging-0.9-2.3/rlibkriging/src/libK/src/lib/include/libKriging/utils/cache_details.hpp |only rlibkriging-0.9-2.3/rlibkriging/src/libK/src/lib/include/libKriging/utils/custom_hash_function.hpp |only rlibkriging-0.9-2.3/rlibkriging/src/libK/tests |only rlibkriging-0.9-3/rlibkriging/DESCRIPTION | 14 rlibkriging-0.9-3/rlibkriging/MD5 | 1645 ++++------ rlibkriging-0.9-3/rlibkriging/R/KrigingClass.R | 2 rlibkriging-0.9-3/rlibkriging/R/NoiseKrigingClass.R | 2 rlibkriging-0.9-3/rlibkriging/R/NuggetKrigingClass.R | 2 rlibkriging-0.9-3/rlibkriging/R/RcppExports.R | 24 rlibkriging-0.9-3/rlibkriging/README.md | 13 rlibkriging-0.9-3/rlibkriging/cleanup | 26 rlibkriging-0.9-3/rlibkriging/cleanup.win | 26 rlibkriging-0.9-3/rlibkriging/configure | 20 rlibkriging-0.9-3/rlibkriging/configure.win | 4 rlibkriging-0.9-3/rlibkriging/man/load.Kriging.Rd | 1 rlibkriging-0.9-3/rlibkriging/man/load.NoiseKriging.Rd | 1 rlibkriging-0.9-3/rlibkriging/man/load.NuggetKriging.Rd | 1 rlibkriging-0.9-3/rlibkriging/man/save.Kriging.Rd | 1 rlibkriging-0.9-3/rlibkriging/man/save.NoiseKriging.Rd | 1 rlibkriging-0.9-3/rlibkriging/man/save.NuggetKriging.Rd | 1 rlibkriging-0.9-3/rlibkriging/src/Makevars | 9 rlibkriging-0.9-3/rlibkriging/src/Makevars.win | 5 rlibkriging-0.9-3/rlibkriging/src/RcppExports.cpp | 65 rlibkriging-0.9-3/rlibkriging/src/libK/CMakeLists.txt | 84 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/CMakeLists.txt | 39 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/cmake_aux/Modules/ARMA_FindSuperLU.cmake |only rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo | 53 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/BaseCube_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/BaseCube_meat.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/Base_bones.hpp | 14 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/Base_meat.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/Col_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/Col_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/CubeToMatOp_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/CubeToMatOp_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/Cube_bones.hpp | 39 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/Cube_meat.hpp | 72 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/GenCube_bones.hpp | 14 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/GenCube_meat.hpp | 6 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/Gen_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/Gen_meat.hpp | 6 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/GlueCube_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/GlueCube_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/Glue_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/Glue_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/MapMat_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/MapMat_meat.hpp | 91 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/Mat_bones.hpp | 55 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/Mat_meat.hpp | 106 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/OpCube_bones.hpp | 18 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/OpCube_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/Op_bones.hpp | 16 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/Op_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/Proxy.hpp | 112 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/ProxyCube.hpp | 24 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/Row_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/Row_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SizeCube_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SizeCube_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SizeMat_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SizeMat_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpBase_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpBase_meat.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpCol_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpCol_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpGlue_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpGlue_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpMat_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpMat_iterators_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpMat_meat.hpp | 64 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpOp_bones.hpp | 16 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpOp_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpProxy.hpp | 74 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpRow_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpRow_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpSubview_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpSubview_col_list_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpSubview_col_list_meat.hpp | 6 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpSubview_iterators_meat.hpp | 6 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpSubview_meat.hpp | 6 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpToDGlue_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpToDGlue_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpToDOp_bones.hpp | 16 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpToDOp_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpValProxy_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/SpValProxy_meat.hpp | 59 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/access.hpp | 22 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/arma_cmath.hpp | 164 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/arma_config.hpp | 32 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/arma_forward.hpp | 230 - rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/arma_ostream_bones.hpp | 15 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/arma_ostream_meat.hpp | 28 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/arma_rel_comparators.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/arma_rng.hpp | 38 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/arma_rng_cxx03.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/arma_static_check.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/arma_str.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/arma_version.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/arrayops_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/arrayops_meat.hpp | 21 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/auxlib_bones.hpp | 53 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/auxlib_meat.hpp | 413 -- rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/band_helper.hpp | 6 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/compiler_check.hpp | 13 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/compiler_setup.hpp | 76 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/compiler_setup_post.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/cond_rel.hpp |only rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/config.hpp | 83 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/config.hpp.cmake | 83 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/constants.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/constants_old.hpp | 90 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/csv_name.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/debug.hpp | 73 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/def_arpack.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/def_atlas.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/def_blas.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/def_fftw3.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/def_lapack.hpp | 26 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/def_superlu.hpp | 28 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/diagmat_proxy.hpp | 39 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/diagview_bones.hpp | 6 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/diagview_meat.hpp | 18 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/diskio_bones.hpp | 13 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/diskio_meat.hpp | 38 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/distr_param.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/eGlueCube_bones.hpp | 14 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/eGlueCube_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/eGlue_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/eGlue_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/eOpCube_bones.hpp | 19 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/eOpCube_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/eOp_bones.hpp | 17 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/eOp_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/eglue_core_bones.hpp | 21 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/eglue_core_meat.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/eop_aux.hpp | 57 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/eop_core_bones.hpp | 109 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/eop_core_meat.hpp | 11 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fft_engine_fftw3.hpp | 55 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fft_engine_kissfft.hpp | 10 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/field_bones.hpp | 40 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/field_meat.hpp | 273 + rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fill.hpp | 41 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_accu.hpp | 1143 ------ rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_all.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_any.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_approx_equal.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_as_scalar.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_balance.hpp |only rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_chi2rnd.hpp | 22 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_chol.hpp | 10 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_circshift.hpp |only rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_clamp.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_cond_rcond.hpp | 40 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_conv.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_conv_to.hpp | 61 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_cor.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_cov.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_cross.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_cumprod.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_cumsum.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_det.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_diagmat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_diags_spdiags.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_diagvec.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_diff.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_dot.hpp | 6 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_eig_gen.hpp | 20 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_eig_pair.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_eig_sym.hpp | 29 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_eigs_gen.hpp | 34 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_eigs_sym.hpp | 28 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_elem.hpp | 282 - rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_expmat.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_eye.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_fft.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_fft2.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_find.hpp | 86 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_find_unique.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_flip.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_hess.hpp | 10 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_hist.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_histc.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_index_max.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_index_min.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_inplace_strans.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_inplace_trans.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_interp1.hpp | 6 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_interp2.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_intersect.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_inv.hpp | 14 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_inv_sympd.hpp | 14 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_join.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_kmeans.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_kron.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_log_det.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_log_normpdf.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_logmat.hpp | 16 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_lu.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_max.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_mean.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_median.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_min.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_misc.hpp | 34 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_mvnrnd.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_n_unique.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_nonzeros.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_norm.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_normalise.hpp | 6 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_normcdf.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_normpdf.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_numel.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_omit.hpp |only rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_ones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_orth_null.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_pinv.hpp | 10 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_polyfit.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_polyval.hpp | 6 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_powext.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_powmat.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_princomp.hpp | 14 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_prod.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_qr.hpp | 10 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_quantile.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_qz.hpp | 6 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_randg.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_randi.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_randn.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_randperm.hpp | 15 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_randu.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_range.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_rank.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_regspace.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_repelem.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_repmat.hpp | 63 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_reshape.hpp | 55 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_resize.hpp | 56 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_reverse.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_roots.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_schur.hpp | 10 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_shuffle.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_size.hpp | 14 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_solve.hpp | 20 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_sort.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_sort_index.hpp | 14 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_speye.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_spones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_sprandn.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_sprandu.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_spsolve.hpp | 10 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_sqrtmat.hpp | 16 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_stddev.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_strans.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_sum.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_svd.hpp | 62 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_svds.hpp | 18 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_sylvester.hpp | 39 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_symmat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_toeplitz.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_trace.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_trans.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_trapz.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_trig.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_trimat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_trimat_ind.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_trunc_exp.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_trunc_log.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_unique.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_var.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_vecnorm.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_vectorise.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_wishrnd.hpp | 20 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/fn_zeros.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_affmul_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_affmul_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_atan2_bones.hpp | 9 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_atan2_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_conv_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_conv_meat.hpp | 50 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_cor_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_cor_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_cov_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_cov_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_cross_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_cross_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_hist_bones.hpp | 14 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_hist_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_histc_bones.hpp | 14 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_histc_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_hypot_bones.hpp | 9 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_hypot_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_intersect_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_intersect_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_join_bones.hpp | 16 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_join_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_kron_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_kron_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_max_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_max_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_min_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_min_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_mixed_bones.hpp | 24 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_mixed_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_mvnrnd_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_mvnrnd_meat.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_polyfit_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_polyfit_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_polyval_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_polyval_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_powext_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_powext_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_quantile_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_quantile_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_relational_bones.hpp | 36 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_relational_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_solve_bones.hpp | 20 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_solve_meat.hpp | 17 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_times_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_times_meat.hpp | 206 - rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_times_misc_bones.hpp | 16 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_times_misc_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_toeplitz_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_toeplitz_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_trapz_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/glue_trapz_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/gmm_diag_bones.hpp | 18 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/gmm_diag_meat.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/gmm_full_bones.hpp | 20 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/gmm_full_meat.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/gmm_misc_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/gmm_misc_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/hdf5_misc.hpp | 30 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/hdf5_name.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/include_hdf5.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/include_superlu.hpp | 103 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/injector_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/injector_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/memory.hpp | 22 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/mp_misc.hpp | 11 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/mtGlueCube_bones.hpp | 14 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/mtGlueCube_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/mtGlue_bones.hpp | 14 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/mtGlue_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/mtOpCube_bones.hpp | 22 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/mtOpCube_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/mtOp_bones.hpp | 20 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/mtOp_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/mtSpGlue_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/mtSpGlue_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/mtSpOp_bones.hpp | 22 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/mtSpOp_meat.hpp | 16 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/mtSpReduceOp_bones.hpp | 14 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/mtSpReduceOp_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/mul_gemm.hpp | 28 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/mul_gemm_mixed.hpp | 16 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/mul_gemv.hpp | 25 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/mul_herk.hpp | 39 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/mul_syrk.hpp | 22 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_DenseGenMatProd_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_DenseGenMatProd_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_DoubleShiftQR_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_DoubleShiftQR_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_EigsSelect.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_GenEigsSolver_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_GenEigsSolver_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_SortEigenvalue.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_SparseGenMatProd_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_SparseGenMatProd_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_SparseGenRealShiftSolve_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_SparseGenRealShiftSolve_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_SymEigsShiftSolver_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_SymEigsShiftSolver_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_SymEigsSolver_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_SymEigsSolver_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_TridiagEigen_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_TridiagEigen_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_UpperHessenbergEigen_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_UpperHessenbergEigen_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_UpperHessenbergQR_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_UpperHessenbergQR_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/newarp_cx_attrib.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_accu_bones.hpp |only rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_accu_meat.hpp |only rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_all_bones.hpp | 15 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_all_meat.hpp | 157 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_any_bones.hpp | 15 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_any_meat.hpp | 130 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_chi2rnd_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_chi2rnd_meat.hpp | 13 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_chol_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_chol_meat.hpp | 6 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_circshift_bones.hpp |only rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_circshift_meat.hpp |only rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_clamp_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_clamp_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_col_as_mat_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_col_as_mat_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_cond_bones.hpp | 16 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_cond_meat.hpp | 97 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_cor_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_cor_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_cov_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_cov_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_cumprod_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_cumprod_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_cumsum_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_cumsum_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_cx_scalar_bones.hpp | 28 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_cx_scalar_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_det_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_det_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_diagmat_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_diagmat_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_diagvec_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_diagvec_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_diff_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_diff_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_dot_bones.hpp | 52 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_dot_meat.hpp | 287 + rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_dotext_bones.hpp | 9 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_dotext_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_elem_bones.hpp |only rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_elem_meat.hpp |only rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_expmat_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_expmat_meat.hpp | 33 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_fft_bones.hpp | 16 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_fft_meat.hpp | 14 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_find_bones.hpp | 33 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_find_meat.hpp | 56 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_find_unique_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_find_unique_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_flip_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_flip_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_hist_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_hist_meat.hpp | 10 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_htrans_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_htrans_meat.hpp | 58 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_index_max_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_index_max_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_index_min_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_index_min_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_inv_gen_bones.hpp | 16 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_inv_gen_meat.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_inv_spd_bones.hpp | 16 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_inv_spd_meat.hpp | 23 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_log_det_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_log_det_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_logmat_bones.hpp | 16 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_logmat_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_max_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_max_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_mean_bones.hpp | 66 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_mean_meat.hpp | 501 +-- rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_median_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_median_meat.hpp | 6 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_min_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_min_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_nonzeros_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_nonzeros_meat.hpp | 16 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_norm2est_bones.hpp | 20 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_norm2est_meat.hpp | 20 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_norm_bones.hpp | 35 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_norm_meat.hpp | 284 + rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_normalise_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_normalise_meat.hpp | 10 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_omit_bones.hpp |only rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_omit_meat.hpp |only rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_orth_null_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_orth_null_meat.hpp | 38 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_pinv_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_pinv_meat.hpp | 59 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_powmat_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_powmat_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_princomp_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_princomp_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_prod_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_prod_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_range_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_range_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_rank_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_rank_meat.hpp | 21 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_rcond_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_rcond_meat.hpp | 6 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_relational_bones.hpp | 44 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_relational_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_repelem_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_repelem_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_repmat_bones.hpp | 17 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_repmat_meat.hpp | 64 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_reshape_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_reshape_meat.hpp | 73 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_resize_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_resize_meat.hpp | 40 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_reverse_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_reverse_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_roots_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_roots_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_row_as_mat_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_row_as_mat_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_shuffle_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_shuffle_meat.hpp | 15 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sort_bones.hpp | 22 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sort_index_bones.hpp | 64 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sort_index_meat.hpp | 120 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sort_meat.hpp | 270 + rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_as_dense_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_as_dense_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_diagvec_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_diagvec_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_max_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_max_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_mean_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_mean_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_min_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_min_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_minus_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_minus_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_nonzeros_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_nonzeros_meat.hpp | 37 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_plus_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_plus_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_stddev_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_stddev_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_sum_bones.hpp | 13 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_sum_meat.hpp | 92 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_var_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_var_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_vecnorm_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sp_vecnorm_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sqrtmat_bones.hpp | 16 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sqrtmat_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_stddev_bones.hpp | 18 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_stddev_meat.hpp | 84 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_strans_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_strans_meat.hpp | 58 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sum_bones.hpp | 34 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_sum_meat.hpp | 242 + rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_symmat_bones.hpp | 20 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_symmat_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_toeplitz_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_toeplitz_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_trimat_bones.hpp | 22 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_trimat_meat.hpp | 116 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_unique_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_unique_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_var_bones.hpp | 20 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_var_meat.hpp | 182 - rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_vecnorm_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_vecnorm_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_vectorise_bones.hpp | 20 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_vectorise_meat.hpp | 67 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_wishrnd_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/op_wishrnd_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/operator_cube_div.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/operator_cube_minus.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/operator_cube_plus.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/operator_cube_relational.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/operator_cube_schur.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/operator_cube_times.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/operator_div.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/operator_minus.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/operator_ostream.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/operator_plus.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/operator_relational.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/operator_schur.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/operator_times.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/podarray_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/podarray_meat.hpp | 16 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/promote_type.hpp | 190 - rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/restrictors.hpp | 76 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/running_stat_bones.hpp | 10 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/running_stat_meat.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/running_stat_vec_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/running_stat_vec_meat.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/sp_auxlib_bones.hpp | 36 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/sp_auxlib_meat.hpp | 45 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/span.hpp | 11 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spdiagview_bones.hpp | 6 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spdiagview_meat.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spglue_join_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spglue_join_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spglue_kron_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spglue_kron_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spglue_max_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spglue_max_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spglue_merge_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spglue_merge_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spglue_min_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spglue_min_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spglue_minus_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spglue_minus_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spglue_plus_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spglue_plus_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spglue_relational_bones.hpp | 20 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spglue_relational_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spglue_schur_bones.hpp | 16 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spglue_schur_meat.hpp | 41 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spglue_times_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spglue_times_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_accu_bones.hpp |only rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_accu_meat.hpp |only rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_circshift_bones.hpp |only rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_circshift_meat.hpp |only rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_diagmat_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_diagmat_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_htrans_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_htrans_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_misc_bones.hpp | 101 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_misc_meat.hpp | 62 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_norm_bones.hpp | 13 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_norm_meat.hpp | 27 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_normalise_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_normalise_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_omit_bones.hpp |only rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_omit_meat.hpp |only rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_relational_bones.hpp | 44 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_relational_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_repmat_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_repmat_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_reverse_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_reverse_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_strans_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_strans_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_symmat_bones.hpp | 12 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_symmat_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_trimat_bones.hpp | 16 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_trimat_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_vectorise_bones.hpp | 16 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spop_vectorise_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spsolve_factoriser_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/spsolve_factoriser_meat.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/strip.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/subview_bones.hpp | 8 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/subview_cube_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/subview_cube_each_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/subview_cube_each_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/subview_cube_meat.hpp | 6 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/subview_cube_slices_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/subview_cube_slices_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/subview_each_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/subview_each_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/subview_elem1_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/subview_elem1_meat.hpp | 58 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/subview_elem2_bones.hpp | 6 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/subview_elem2_meat.hpp | 238 + rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/subview_field_bones.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/subview_field_meat.hpp | 4 rlibkriging-0.9-3/rlibkriging/src/libK/armadillo/include/armadillo_bits/subview_meat.hpp | 6 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Title: Acquiring and Processing Data from Japan Institute for Health
Security
Description: Download and post process the infectious disease case data
from Japan Institute for Health Security. Also the package included
ready-to-analyse datasets. See the data source website for further details
<https://id-info.jihs.go.jp/>.
Author: Tomonori Hoshi [aut, cre],
Erina Ishigaki [aut],
Satoshi Kaneko [aut]
Maintainer: Tomonori Hoshi <tomonori.hoshi.japan@gmail.com>
Diff between jpinfect versions 0.1.10 dated 2026-01-16 and 2023.2026.02 dated 2026-01-27
DESCRIPTION | 6 - MD5 | 8 - R/jpinfect_read_confirmed.R | 5 - data/bullet.rda |binary inst/doc/jpinfect.html | 204 ++++++++++++++++++++++---------------------- 5 files changed, 110 insertions(+), 113 deletions(-)
Title: Generalised Linear Mixed Models in R
Description: Specification, analysis, simulation, and fitting of generalised linear mixed models.
Includes Markov Chain Monte Carlo Maximum likelihood model fitting for a range of models,
non-linear fixed effect specifications, a wide range of flexible covariance functions that can be combined arbitrarily,
robust and bias-corrected standard error estimation, power calculation, data simulation, and more.
Author: Sam Watson [aut, cre]
Maintainer: Sam Watson <S.I.Watson@bham.ac.uk>
Diff between glmmrBase versions 1.2.0 dated 2026-01-21 and 1.2.1 dated 2026-01-27
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/Betadist.R | 4 ++-- R/R6Model.R | 24 +++++++++++++++--------- build/partial.rdb |binary man/Model.Rd | 48 ++++++++++++++++++++++++++++++------------------ man/exponential.Rd | 2 +- 7 files changed, 58 insertions(+), 40 deletions(-)
Title: Generic Implementation of a PK/PD Model
Description: A generic, easy-to-use and expandable implementation of a
pharmacokinetic (PK) / pharmacodynamic (PD) model based on the S4
class system. This package allows the user to read and write
pharmacometric models from and to files, including a JSON-based
interface to import Campsis models defined using a formal JSON schema
distributed with the package. Models can be adapted further on the fly
in the R environment using an intuitive API to add, modify or delete
equations, ordinary differential equations (ODEs), model parameters or
compartment properties (such as infusion duration or rate,
bioavailability and initial values). The package also provides export
facilities for use with the simulation packages ‘rxode2’ and
‘mrgsolve’. The package itself is licensed under the GPL (>= 3); the
JSON schema file shipped in inst/extdata is licensed separately under
the Creative Commons Attribution 4.0 International (CC BY 4.0). This
package is designed and intended to be used with the package
‘campsi [...truncated...]
Author: Nicolas Luyckx [aut, cre]
Maintainer: Nicolas Luyckx <nicolas.luyckx@calvagone.com>
Diff between campsismod versions 1.2.3 dated 2025-07-31 and 1.3.0 dated 2026-01-27
DESCRIPTION | 43 ++++++----- LICENSE.note |only MD5 | 104 ++++++++++++++++---------- NAMESPACE | 16 ++++ NEWS.md | 3 R/campsis_model.R | 97 +++++++++++++++++++------ R/code_records.R | 2 R/data.R | 2 R/generic.R | 38 +++++++++ R/global.R | 4 - R/json_element.R |only R/json_interface.R |only R/model_parser.R | 4 - R/mrgsolve_conversion.R | 20 ++--- R/parameter.R | 57 ++++++++++++++ R/parameters.R | 120 +++++++++++++++++++++++++++++++ R/rxode_conversion.R | 4 - R/utilities.R | 35 ++++++++- README.md | 38 +++++++++ build/vignette.rds |binary inst/doc/campsismod.html | 5 - inst/doc/v01_model_creation.html | 5 - inst/doc/v02_structural_model.html | 5 - inst/doc/v03_model_adaptation.html | 5 - inst/doc/v04_compartment_properties.html | 5 - inst/doc/v05_parameters.html | 5 - inst/doc/v06_append_pd_model.html | 5 - inst/extdata |only man/JSONElement.Rd |only man/convertAnyComment.Rd | 4 - man/convertOutvarsToCapture.Rd | 2 man/exportToJSON.Rd |only man/getCampsismodOption.Rd |only man/getCampsismodOptions.Rd |only man/getNameInModel.Rd | 4 - man/hasComment.Rd | 4 - man/isComment.Rd | 4 - man/jsonToCampsisModel.Rd |only man/jsonToOffDiagParameter.Rd |only man/jsonToParameter.Rd |only man/json_element-class.Rd |only man/loadFromJSON.Rd |only man/mapJSONPropertiesToS4Slots.Rd |only man/mapS4SlotsToJSONProperties.Rd |only man/model_suite.Rd | 2 man/mrgsolveCapture.Rd | 2 man/mrgsolveCompartment.Rd | 2 man/mrgsolveMain.Rd | 2 man/mrgsolveMatrix.Rd | 2 man/mrgsolveOde.Rd | 2 man/mrgsolveParam.Rd | 2 man/mrgsolveTable.Rd | 2 man/openJSON.Rd |only man/parseStatements.Rd | 6 - man/processJSONDoubleArrayParameter.Rd |only man/read.campsis.Rd | 8 +- man/rxodeCode.Rd | 2 man/rxodeParams.Rd | 2 man/write.Rd | 5 + tests/testthat/json_examples |only tests/testthat/testJSONInterface.R |only tests/testthat/testUtils.R | 20 ----- 62 files changed, 534 insertions(+), 165 deletions(-)
Title: Read and Write Rectangular Text Data Quickly
Description: The goal of 'vroom' is to read and write data (like 'csv',
'tsv' and 'fwf') quickly. When reading it uses a quick initial
indexing step, then reads the values lazily , so only the data you
actually use needs to be read. The writer formats the data in
parallel and writes to disk asynchronously from formatting.
Author: Jim Hester [aut] ,
Hadley Wickham [aut] ,
Jennifer Bryan [aut, cre] ,
Shelby Bearrows [ctb],
https://github.com/mandreyel/ [cph] ,
Jukka Jylaenki [cph] ,
Mikkel Joergensen [cph] ,
Posit Software, PBC [cph, fnd]
Maintainer: Jennifer Bryan <jenny@posit.co>
Diff between vroom versions 1.6.7 dated 2025-11-28 and 1.7.0 dated 2026-01-27
vroom-1.6.7/vroom/build/stage23.rdb |only vroom-1.6.7/vroom/man/vroom_altrep_opts.Rd |only vroom-1.7.0/vroom/DESCRIPTION | 11 vroom-1.7.0/vroom/MD5 | 192 +++++----- vroom-1.7.0/vroom/NAMESPACE | 4 vroom-1.7.0/vroom/NEWS.md | 28 + vroom-1.7.0/vroom/R/col_types.R | 168 +++++++-- vroom-1.7.0/vroom/R/collector.R | 1 vroom-1.7.0/vroom/R/date.R | 31 + vroom-1.7.0/vroom/R/generator.R | 2 vroom-1.7.0/vroom/R/import-standalone-obj-type.R |only vroom-1.7.0/vroom/R/import-standalone-types-check.R |only vroom-1.7.0/vroom/R/locale.R | 42 +- vroom-1.7.0/vroom/R/path.R | 249 +++++++++----- vroom-1.7.0/vroom/R/problems.R | 2 vroom-1.7.0/vroom/R/utils.R | 17 vroom-1.7.0/vroom/R/vroom-package.R | 2 vroom-1.7.0/vroom/R/vroom.R | 137 +++---- vroom-1.7.0/vroom/R/vroom_fwf.R | 159 ++++++-- vroom-1.7.0/vroom/R/vroom_lines.R | 10 vroom-1.7.0/vroom/R/vroom_write.R | 39 +- vroom-1.7.0/vroom/README.md | 33 - vroom-1.7.0/vroom/inst/WORDLIST | 7 vroom-1.7.0/vroom/inst/bench/fwf/vroom_no_altrep-dplyr.R | 2 vroom-1.7.0/vroom/inst/doc/benchmarks.R | 24 - vroom-1.7.0/vroom/inst/doc/benchmarks.Rmd | 86 ++++ vroom-1.7.0/vroom/inst/doc/benchmarks.html | 20 - vroom-1.7.0/vroom/inst/doc/vroom.R | 18 - vroom-1.7.0/vroom/inst/doc/vroom.Rmd | 30 + vroom-1.7.0/vroom/inst/doc/vroom.html | 11 vroom-1.7.0/vroom/inst/extdata/mtcars-concatenated.csv.gz |only vroom-1.7.0/vroom/inst/extdata/mtcars.csv.tar.gz |only vroom-1.7.0/vroom/man/as.col_spec.Rd | 2 vroom-1.7.0/vroom/man/cols.Rd | 79 +++- vroom-1.7.0/vroom/man/date_names.Rd | 7 vroom-1.7.0/vroom/man/gen_tbl.Rd | 15 vroom-1.7.0/vroom/man/guess_type.Rd | 2 vroom-1.7.0/vroom/man/spec.Rd | 2 vroom-1.7.0/vroom/man/vroom-package.Rd | 2 vroom-1.7.0/vroom/man/vroom.Rd | 50 +- vroom-1.7.0/vroom/man/vroom_altrep.Rd | 4 vroom-1.7.0/vroom/man/vroom_format.Rd | 9 vroom-1.7.0/vroom/man/vroom_fwf.Rd | 173 +++++---- vroom-1.7.0/vroom/man/vroom_lines.Rd | 16 vroom-1.7.0/vroom/man/vroom_write.Rd | 26 - vroom-1.7.0/vroom/man/vroom_write_lines.Rd | 8 vroom-1.7.0/vroom/src/altrep.cc | 25 - vroom-1.7.0/vroom/src/altrep.h | 48 -- vroom-1.7.0/vroom/src/columns.h | 144 +++----- vroom-1.7.0/vroom/src/connection.h | 39 -- vroom-1.7.0/vroom/src/delimited_index.cc | 26 + vroom-1.7.0/vroom/src/delimited_index.h | 56 +-- vroom-1.7.0/vroom/src/delimited_index_connection.cc | 76 +++- vroom-1.7.0/vroom/src/fixed_width_index.h | 5 vroom-1.7.0/vroom/src/fixed_width_index_connection.cc | 64 +++ vroom-1.7.0/vroom/src/grisu3.h | 6 vroom-1.7.0/vroom/src/index_collection.cc | 12 vroom-1.7.0/vroom/src/utils.h | 2 vroom-1.7.0/vroom/src/vroom.cc | 13 vroom-1.7.0/vroom/src/vroom_big_int.cc | 6 vroom-1.7.0/vroom/src/vroom_big_int.h | 3 vroom-1.7.0/vroom/src/vroom_chr.cc | 6 vroom-1.7.0/vroom/src/vroom_chr.h | 4 vroom-1.7.0/vroom/src/vroom_date.cc | 6 vroom-1.7.0/vroom/src/vroom_date.h | 4 vroom-1.7.0/vroom/src/vroom_dbl.cc | 6 vroom-1.7.0/vroom/src/vroom_dbl.h | 4 vroom-1.7.0/vroom/src/vroom_dttm.cc | 6 vroom-1.7.0/vroom/src/vroom_dttm.h | 4 vroom-1.7.0/vroom/src/vroom_errors.h | 20 - vroom-1.7.0/vroom/src/vroom_fct.cc | 6 vroom-1.7.0/vroom/src/vroom_fct.h | 3 vroom-1.7.0/vroom/src/vroom_int.cc | 6 vroom-1.7.0/vroom/src/vroom_int.h | 3 vroom-1.7.0/vroom/src/vroom_num.cc | 6 vroom-1.7.0/vroom/src/vroom_num.h | 3 vroom-1.7.0/vroom/src/vroom_rle.cc | 6 vroom-1.7.0/vroom/src/vroom_rle.h | 4 vroom-1.7.0/vroom/src/vroom_time.cc | 6 vroom-1.7.0/vroom/src/vroom_time.h | 3 vroom-1.7.0/vroom/src/vroom_vec.h | 4 vroom-1.7.0/vroom/src/vroom_write.cc | 15 vroom-1.7.0/vroom/tests/testthat/_snaps/col_types.md | 50 ++ vroom-1.7.0/vroom/tests/testthat/_snaps/connection.md |only vroom-1.7.0/vroom/tests/testthat/_snaps/datetime.md |only vroom-1.7.0/vroom/tests/testthat/_snaps/locale.md |only vroom-1.7.0/vroom/tests/testthat/_snaps/multi-file.md |only vroom-1.7.0/vroom/tests/testthat/_snaps/path.md | 44 ++ vroom-1.7.0/vroom/tests/testthat/_snaps/problems.md | 10 vroom-1.7.0/vroom/tests/testthat/_snaps/vroom.md |only vroom-1.7.0/vroom/tests/testthat/_snaps/vroom_fwf.md |only vroom-1.7.0/vroom/tests/testthat/_snaps/vroom_write.md |only vroom-1.7.0/vroom/tests/testthat/test-col_types.R | 44 ++ vroom-1.7.0/vroom/tests/testthat/test-connection.R | 77 ++++ vroom-1.7.0/vroom/tests/testthat/test-datetime.R | 18 - vroom-1.7.0/vroom/tests/testthat/test-locale.R |only vroom-1.7.0/vroom/tests/testthat/test-multi-file.R | 11 vroom-1.7.0/vroom/tests/testthat/test-path.R | 90 ++++- vroom-1.7.0/vroom/tests/testthat/test-problems.R | 18 - vroom-1.7.0/vroom/tests/testthat/test-vroom.R | 76 +++- vroom-1.7.0/vroom/tests/testthat/test-vroom_fwf.R | 64 +++ vroom-1.7.0/vroom/tests/testthat/test-vroom_write.R | 16 vroom-1.7.0/vroom/vignettes/benchmarks.Rmd | 86 ++++ vroom-1.7.0/vroom/vignettes/vroom.Rmd | 30 + 104 files changed, 1922 insertions(+), 1082 deletions(-)
Title: 'Semantic Versioning V2.0.0' Parser
Description: Tools and functions for parsing, rendering and operating on
semantic version strings. Semantic versioning is a simple set of rules
and requirements that dictate how version numbers are assigned and
incremented as outlined at <https://semver.org>.
Author: John Harrison [aut] ,
Thomas Piernicke [ctb, cre],
Marko Zivanovic [aut, cph]
Maintainer: Thomas Piernicke <thomasp@gfz.de>
Diff between semver versions 0.2.0 dated 2017-01-06 and 0.2.1 dated 2026-01-27
DESCRIPTION | 21 MD5 | 34 - NEWS.md | 3 R/RcppExports.R | 54 +- README.md | 4 build/vignette.rds |binary inst/doc/basics.R | 252 ++++----- inst/doc/basics.Rmd | 570 ++++++++++----------- inst/doc/basics.html | 1253 +++++++++++++++++++++++++++++------------------ man/increment_version.Rd | 6 man/parse_version.Rd | 1 man/render_version.Rd | 3 man/reset_version.Rd | 11 man/semver.Rd | 59 +- man/set_version.Rd | 11 src/Makevars | 2 src/RcppExports.cpp | 32 - vignettes/basics.Rmd | 570 ++++++++++----------- 18 files changed, 1632 insertions(+), 1254 deletions(-)
Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create
and manage project-local R libraries, save the state of these libraries to
a 'lockfile', and later restore your library as required. Together, these
tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre] ,
Hadley Wickham [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between renv versions 1.1.6 dated 2026-01-16 and 1.1.7 dated 2026-01-27
renv-1.1.6/renv/inst/repos/src/contrib/renv_1.1.6.tar.gz |only renv-1.1.7/renv/DESCRIPTION | 6 +-- renv-1.1.7/renv/MD5 | 30 +++++++-------- renv-1.1.7/renv/NEWS.md | 18 +++++++++ renv-1.1.7/renv/R/bootstrap.R | 18 ++++++++- renv-1.1.7/renv/R/config.R | 25 ++++++++++++ renv-1.1.7/renv/R/dependencies.R | 9 +++- renv-1.1.7/renv/R/renvignore.R | 4 +- renv-1.1.7/renv/inst/repos/src/contrib/PACKAGES | 4 +- renv-1.1.7/renv/inst/repos/src/contrib/PACKAGES.gz |binary renv-1.1.7/renv/inst/repos/src/contrib/PACKAGES.rds |binary renv-1.1.7/renv/inst/repos/src/contrib/renv_1.1.7.tar.gz |only renv-1.1.7/renv/inst/resources/activate.R | 28 +++++++++++--- renv-1.1.7/renv/tests/testthat/test-bootstrap.R | 30 +++++++++++++++ renv-1.1.7/renv/tests/testthat/test-config.R | 30 +++++++++++++++ renv-1.1.7/renv/tests/testthat/test-embed.R | 1 renv-1.1.7/renv/tests/testthat/test-renvignore.R | 26 +++++++++++++ 17 files changed, 197 insertions(+), 32 deletions(-)
Title: Penalized Elastic Net S/MM-Estimator of Regression
Description: Robust penalized (adaptive) elastic net S and M estimators for
linear regression. The adaptive methods are proposed in
Kepplinger, D. (2023) <doi:10.1016/j.csda.2023.107730> and the
non-adaptive methods in
Cohen Freue, G. V., Kepplinger, D., Salibián-Barrera, M., and Smucler, E.
(2019) <doi:10.1214/19-AOAS1269>.
The package implements robust hyper-parameter selection with robust
information sharing cross-validation according to Kepplinger & Wei (2025)
<doi:10.1080/00401706.2025.2540970>.
Author: David Kepplinger [aut, cre],
Matias Salibian-Barrera [aut],
Gabriela Cohen Freue [aut]
Maintainer: David Kepplinger <david.kepplinger@gmail.com>
Diff between pense versions 2.5.0 dated 2026-01-13 and 2.5.2 dated 2026-01-27
DESCRIPTION | 28 MD5 | 71 +- NAMESPACE | 3 NEWS.md | 4 R/coef-methods.R | 1 R/cv_utilities.R | 9 R/elnet.R | 37 - R/enpy.R | 14 R/pense_regression.R | 24 R/pense_regression_args.R | 10 R/residuals-methods.R | 2 R/utilities-internal.R | 13 R/utilities.R | 1 inst/doc/computing_adapense.R | 16 inst/doc/computing_adapense.Rmd | 15 inst/doc/computing_adapense.html | 11 inst/doc/lambda_grids.R | 12 inst/doc/lambda_grids.Rmd | 21 inst/doc/lambda_grids.html | 61 + man/elnet.Rd | 11 man/elnet_cv.Rd | 6 man/enpy_initial_estimates.Rd | 2 man/pense.Rd | 16 man/pense_cv.Rd | 2 man/prinsens.Rd | 6 src/regularization_path.hpp | 344 ++++++---- src/rho.cc | 2 tests/testthat/Rplots.pdf |only tests/testthat/snap/pense_algo_st-mopt.json | 822 +++++++++++++------------- tests/testthat/snap/pense_algo_st.json | 88 +- tests/testthat/snap/regmest_algo_st-mopt.json | 196 +++--- tests/testthat/snap/regmest_algo_st.json | 80 +- tests/testthat/test_discrete_response.R | 2 tests/testthat/test_pense_algorithm.R | 2 vignettes/computing_adapense.Rmd | 15 vignettes/lambda_grids.Rmd | 21 vignettes/lambda_grids_fits.RData |binary 37 files changed, 990 insertions(+), 978 deletions(-)
Title: Extension of `data.frame`
Description: Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. Offers a natural and flexible syntax, for faster development.
Author: Tyson Barrett [aut, cre] ,
Matt Dowle [aut],
Arun Srinivasan [aut],
Jan Gorecki [aut],
Michael Chirico [aut] ,
Toby Hocking [aut] ,
Benjamin Schwendinger [aut] ,
Ivan Krylov [aut] ,
Pasha Stetsenko [ctb],
Tom Short [ctb],
Steve Lianoglou [ctb],
Eduar [...truncated...]
Maintainer: Tyson Barrett <t.barrett88@gmail.com>
Diff between data.table versions 1.18.0 dated 2025-12-24 and 1.18.2.1 dated 2026-01-27
DESCRIPTION | 12 MD5 | 71 ++-- NEWS.md | 25 + R/data.table.R | 25 + build/vignette.rds |binary inst/doc/datatable-benchmarking.html | 2 inst/doc/datatable-faq.html | 2 inst/doc/datatable-fread-and-fwrite.html | 2 inst/doc/datatable-importing.html | 2 inst/doc/datatable-intro.html | 2 inst/doc/datatable-joins.html | 2 inst/doc/datatable-keys-fast-subset.html | 6 inst/doc/datatable-programming.html | 8 inst/doc/datatable-reference-semantics.html | 2 inst/doc/datatable-reshape.html | 2 inst/doc/datatable-sd-usage.html | 2 inst/doc/datatable-secondary-indices-and-auto-indexing.html | 6 inst/tests/froll.Rraw.bz2 |binary inst/tests/tests.Rraw.bz2 |binary man/setkey.Rd | 2 man/setorder.Rd | 2 src/Makevars.in | 4 src/assign.c | 208 ++++++------ src/data.table-win.def |only src/data.table.h | 11 src/dogroups.c | 43 +- src/froll.c | 12 src/gsumm.c | 12 src/ijoin.c | 25 - src/init.c | 2 src/mergelist.c | 26 - src/nafill.c | 2 src/rbindlist.c | 6 src/subset.c | 6 src/utils.c | 26 + src/wrappers.c | 7 tests/froll.R | 8 37 files changed, 353 insertions(+), 220 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-12-20 0.1.1
Title: A Universal Approach for Causal Mediation Analysis
Description: This program realizes a universal estimation approach that accommodates
multi-category variables and effect scales, making up for the deficiencies
of the existing approaches when dealing with non-binary exposures and
complex models. The estimation via bootstrapping can simultaneously provide results of
causal mediation on risk difference (RD), odds ratio (OR) and risk ratio (RR) scales with tests of the effects' difference.
The estimation is also applicable to many other settings, e.g., moderated mediation, inconsistent covariates,
panel data, etc. The high flexibility and compatibility
make it possible to apply for any type of model, greatly meeting the needs of
current empirical researches.
Author: Tianbao Zhou [aut, cre],
Xinghao Li [aut],
Lin Liu* [aut]
Maintainer: Tianbao Zhou <michaelzhou@buaa.edu.cn>
Diff between unvs.med versions 1.0.0 dated 2025-06-04 and 1.1.0 dated 2026-01-27
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- NEWS.md | 10 +++++++++- R/BootEstimation_MT.R | 13 ++++++++----- R/BootEstimation_for.R | 9 ++++++--- R/FormalEstmed.R | 37 ++++++++++++++++++++++++++++++++++--- R/SingleEstimation.R | 22 +++++++++++++++------- R/Statistics.R | 12 +++++++----- R/potentialoutcome_numX.R | 19 ++++++++++++++++--- man/BootEstimation_MT.Rd | 8 ++++++-- man/BootEstimation_for.Rd | 8 ++++++-- man/FormalEstmed.Rd | 22 +++++++++++++++++++++- man/SingleEstimation.Rd | 7 ++++++- man/Statistics.Rd | 6 +++++- man/potentialoutcome_numX.Rd | 6 +++++- 15 files changed, 162 insertions(+), 53 deletions(-)
Title: Kaplan-Meier Plot with 'ggplot2'
Description: The function 'jskm()' creates publication quality Kaplan-Meier plot with at risk tables below. 'svyjskm()' provides plot for weighted Kaplan-Meier estimator.
Author: Jinseob Kim [aut, cre] ,
yoonkyoung Chun [aut],
Zarathu [cph, fnd],
sungho Choi [aut],
Mingu Jee [aut],
Wonbin Hahn [aut],
Taehong Kim [aut]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jskm versions 0.5.22 dated 2025-11-28 and 0.6.0 dated 2026-01-27
DESCRIPTION | 18 ++-- MD5 | 15 +-- NEWS.md | 12 ++ R/jskm.R | 166 ++++++++++++++++++++++++------------- R/svyjskm.R | 187 ++++++++++++++++++++++++++---------------- inst/doc/jskm.html | 44 +++++---- man/jskm.Rd | 18 ++-- man/svyjskm.Rd | 22 ++-- tests/testthat/test_taehong.R |only 9 files changed, 306 insertions(+), 176 deletions(-)
Title: A Method to Search for Differentially Expressed Genes and to
Detect Recurrent Chromosomal Copy Number Aberrations
Description: A fold change rank based method is presented to search for genes with
changing expression and to detect recurrent chromosomal copy number
aberrations. This method may be useful for high-throughput biological
data (micro-array, sequencing, ...).
Probabilities are associated with genes or probes in the data set and
there is no problem of multiple tests when using this method. For
array-based comparative genomic hybridization data, segmentation
results are obtained by merging the significant probes detected.
Author: Doulaye Dembele [aut, cre]
Maintainer: Doulaye Dembele <doulaye@igbmc.fr>
Diff between fcros versions 1.6.1 dated 2019-05-31 and 1.6-6 dated 2026-01-27
DESCRIPTION | 31 ++++++++------- MD5 | 104 +++++++++++++++++++++++++-------------------------- R/calcSRmat.R | 3 - R/calcSRmatMod.R | 9 +--- R/chrMerge.R | 24 +++++------ R/chrPlot.R | 10 ++-- R/chrPlot2.R | 14 +++--- R/chrSegment.R | 2 R/dataSummary.R | 4 - R/fc2Calc.R | 10 ++-- R/fcros2.R | 2 R/fcrosC.R |only R/fcrosFCmat.R | 5 -- R/fcrosMod.R | 7 +-- R/fcrosRead.R | 5 -- R/fcrosTopN.R | 7 +-- R/fcrosTtest.R | 5 -- R/fcrosWrite.R | 5 -- R/fvalTopN.R | 5 -- R/fvalVolcanoPlot.R | 6 +- R/histoPlot.R | 4 - R/moyStdCalc.R | 6 +- R/pvalTopN.R | 3 - R/pvalVolcanoPlot.R | 2 R/rmatCalc.R | 8 +-- R/rmatTrim.R | 10 ++-- R/tprobaCalc.R | 8 +-- R/voomReads.R | 1 man/chrMerge.rd | 4 - man/chrPlot.rd | 4 - man/chrPlot2.rd | 10 ++-- man/chrSegment.rd | 4 - man/dataSummary.rd | 4 - man/fc2Calc.rd | 4 - man/fcros-package.Rd | 6 +- man/fcros.Rd | 9 ++-- man/fcros2.Rd | 5 +- man/fcrosC.Rd |only man/fcrosFCmat.Rd | 5 +- man/fcrosMod.Rd | 6 +- man/fcrosRead.Rd | 14 +++--- man/fcrosWrite.Rd | 5 +- man/fdata.Rd | 4 - man/moyStdCalc.rd | 6 +- man/pfco.rd | 8 +-- man/pfcoMod.rd | 18 ++++---- man/rankReads.Rd | 3 - man/rmatTrim.rd | 4 - man/scoreThr.Rd | 3 - man/tcnReads.Rd | 5 +- man/tprobaCalc.rd | 4 - man/varBeta.Rd | 3 - src/fcros.c | 35 ++++++++++++++++- src/init.c | 1 54 files changed, 260 insertions(+), 214 deletions(-)
Title: Create Tables from Different Types of Regression
Description: Create regression tables from generalized linear model(GLM), generalized estimating equation(GEE), generalized linear mixed-effects model(GLMM), Cox proportional hazards model, survey-weighted generalized linear model(svyglm) and survey-weighted Cox model results for publication.
Author: Jinseob Kim [aut, cre] ,
Zarathu [cph, fnd],
Yoonkyoung Jeon [aut],
Jaehun Shon [aut],
Hyojong Myung [aut],
Hyungwoo Jo [aut],
Sungho Choi [aut],
Jaewoong Heo [aut],
Mingu Jee [aut],
Yujeong Yoon [aut],
Minhyuk Kim [aut],
Wonbin Hahn [aut]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jstable versions 1.3.19 dated 2025-10-24 and 1.3.23 dated 2026-01-27
DESCRIPTION | 14 - MD5 | 26 +- NEWS.md | 18 + R/CreateTableOneJS.R | 6 R/forestcox.R | 275 ++++++++++++++++++++------ R/svycox.R | 4 R/svyglm.R | 8 R/utils.R | 44 ++-- inst/doc/jstable.html | 30 +- inst/doc/jstable_competing_risk_analysis.html | 4 inst/doc/jstable_options.html | 4 man/TableSubgroupCox.Rd | 8 man/TableSubgroupMultiCox.Rd | 8 man/count_event_by.Rd | 10 14 files changed, 337 insertions(+), 122 deletions(-)
Title: Tools to Quickly and Neatly Summarize Data
Description: Data frame summaries, cross-tabulations,
weight-enabled frequency tables and common descriptive
(univariate) statistics in concise tables available in a
variety of formats (plain ASCII, Markdown and HTML). A good
point-of-entry for exploring data, both for experienced
and new R users.
Author: Dominic Comtois [aut, cre]
Maintainer: Dominic Comtois <dominic.comtois@gmail.com>
Diff between summarytools versions 1.1.4 dated 2025-04-29 and 1.1.5 dated 2026-01-27
DESCRIPTION | 10 +- MD5 | 30 +++--- NAMESPACE | 4 NEWS.md | 5 - R/helpers.R | 3 R/parse_call.R | 198 ++++++++++++++++++++++++++++++++------------- R/print.summarytools.R | 2 R/tb.R | 5 - R/what.is.R | 33 +++---- build/vignette.rds |binary inst/doc/introduction.Rmd | 2 inst/doc/introduction.html | 37 +++----- inst/doc/rmarkdown.html | 55 +++++------- man/print.summarytools.Rd | 2 man/what.is.Rd | 5 - vignettes/introduction.Rmd | 2 16 files changed, 232 insertions(+), 161 deletions(-)
Title: Microbial Community Ecology Data Analysis
Description: A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity analysis, beta diversity analysis, differential abundance test, null model analysis, network analysis, machine learning, environmental data analysis and functional analysis.
Author: Chi Liu [aut, cre],
Felipe R. P. Mansoldo [ctb],
Minjie Yao [ctb],
Xiangzhen Li [ctb]
Maintainer: Chi Liu <liuchi0426@126.com>
Diff between microeco versions 1.16.0 dated 2025-10-31 and 2.0.0 dated 2026-01-27
DESCRIPTION | 6 - MD5 | 43 ++++++------- R/microtable.R | 48 ++++++++------ R/trans_abund.R | 4 - R/trans_beta.R | 36 +++++++++-- R/trans_classifier.R | 11 +-- R/trans_diff.R | 135 ++++++++++++++++++++++++++++++++++++++++-- R/trans_env.R | 39 ++++++++++-- R/trans_func.R | 20 ++++-- R/trans_network.R | 25 ++++++- R/trans_norm.R | 26 +++++--- R/trans_nullmodel.R | 4 - R/utility.R | 4 - data/prok_func_FAPROTAX.RData |binary inst/logo.png |only man/microtable.Rd | 66 +++++++++++++------- man/trans_beta.Rd | 13 ++++ man/trans_diff.Rd | 63 ++++++++++++++++++- man/trans_env.Rd | 16 ++++ man/trans_func.Rd | 5 + man/trans_network.Rd | 6 + man/trans_norm.Rd | 10 ++- man/trans_nullmodel.Rd | 4 - 23 files changed, 457 insertions(+), 127 deletions(-)
Title: Construct Mapper Graphs for Topological and Exploratory Data
Analysis
Description: Topological data analysis (TDA) is a method of data analysis that
uses techniques from topology to analyze high-dimensional data. Here we
implement Mapper, an algorithm from this area developed by Singh, Mémoli and
Carlsson (2007) which generalizes the concept of a
Reeb graph <https://en.wikipedia.org/wiki/Reeb_graph>.
Author: George Clare Kennedy [aut, cre]
Maintainer: George Clare Kennedy <george-clarekennedy@uiowa.edu>
Diff between mappeR versions 2.3.0 dated 2025-07-27 and 2.4.0 dated 2026-01-27
DESCRIPTION | 9 ++--- MD5 | 24 ++++++------- NEWS.md | 6 +++ R/baskin_robbins.R | 16 +++----- R/cartography_chamber.R | 73 ++++++++++++++++++++--------------------- R/clusterer_farm.R | 8 ++-- R/quilting_hut.R | 2 - README.md | 18 ++++++---- man/create_1D_mapper_object.Rd | 8 +--- man/create_mapper_object.Rd | 16 ++------ man/mappeR-package.Rd | 2 - tests/testthat/test-binning.R | 6 +-- tests/testthat/test-inputs.R | 46 +++++++++++++++++++++++-- 13 files changed, 135 insertions(+), 99 deletions(-)
Title: Estimate Inverse Probability Weights
Description: Functions to estimate the probability to receive the observed treatment, based on
individual characteristics. The inverse of these probabilities can be used as weights when
estimating causal effects from observational data via marginal structural models. Both point
treatment situations and longitudinal studies can be analysed. The same functions can be used to
correct for informative censoring.
Author: Hung Thai Tran [aut, cre],
Willem M. van der Wal [aut],
Ronald B. Geskus [aut]
Maintainer: Hung Thai Tran <hungtt@oucru.org>
Diff between ipw versions 1.2.2 dated 2025-12-08 and 1.3.0 dated 2026-01-27
DESCRIPTION | 19 - LICENSE |only MD5 | 42 +- NAMESPACE | 19 - NEWS.md |only R/basdat.R |only R/haartdat.R |only R/healthdat.R |only R/ipwplot.R | 81 +++- R/ipwpoint.R | 470 ++++++++++++++++------------ R/ipwtm.R | 894 +++++++++++++++++++++++++++++++++++-------------------- R/timedat.R |only R/tstartfun.R | 107 ++++-- README.md |only man/basdat.Rd | 83 ++--- man/figures |only man/haartdat.Rd | 95 +++-- man/healthdat.Rd | 82 ++--- man/ipwplot.Rd | 101 +++--- man/ipwpoint.Rd | 259 ++++++++------- man/ipwtm.Rd | 520 +++++++++++++++++-------------- man/timedat.Rd | 95 +++-- man/tstartfun.Rd | 110 +++--- tests |only 24 files changed, 1740 insertions(+), 1237 deletions(-)
Title: Parsing Glycan Structure Text Representations
Description: Provides functions to parse glycan structure text representations
into 'glyrepr' glycan structures. Currently, it supports StrucGP-style,
pGlyco-style, IUPAC-condensed, IUPAC-extended, IUPAC-short, WURCS,
Linear Code, and GlycoCT format. It also provides an automatic parser
to detect the format and parse the structure string.
Author: Bin Fu [aut, cre, cph]
Maintainer: Bin Fu <23110220018@m.fudan.edu.cn>
Diff between glyparse versions 0.5.3 dated 2025-11-04 and 0.5.4 dated 2026-01-27
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 6 ++++++ README.md | 19 +++++++++++++++++-- tests/testthat/test-auto-parse.R | 6 ++---- 5 files changed, 33 insertions(+), 14 deletions(-)
Title: Functions and Data Sets for "That's Weird: Anomaly Detection
Using R" by Rob J Hyndman
Description: All functions and data sets required for the examples in the book
Hyndman (2026) "That's Weird: Anomaly Detection Using R" <https://OTexts.com/weird/>.
All packages needed to run the examples are also loaded.
Author: Rob Hyndman [aut, cre, cph] ,
RStudio [cph]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between weird versions 1.0.2 dated 2024-01-24 and 2.0.0 dated 2026-01-27
weird-1.0.2/weird/R/density.R |only weird-1.0.2/weird/R/ggplot.R |only weird-1.0.2/weird/R/log_scores.R |only weird-1.0.2/weird/R/lookout.R |only weird-1.0.2/weird/R/mvscale.R |only weird-1.0.2/weird/man/as_kde.Rd |only weird-1.0.2/weird/man/autoplot.kde.Rd |only weird-1.0.2/weird/man/density_scores.Rd |only weird-1.0.2/weird/man/hdr_palette.Rd |only weird-1.0.2/weird/man/hdrplot.Rd |only weird-1.0.2/weird/man/lookout.Rd |only weird-1.0.2/weird/man/mvscale.Rd |only weird-1.0.2/weird/man/weird_conflicts.Rd |only weird-1.0.2/weird/man/weird_packages.Rd |only weird-1.0.2/weird/tests/testthat/test-hdr.R |only weird-1.0.2/weird/tests/testthat/test-kde_scores.R |only weird-2.0.0/weird/DESCRIPTION | 33 - weird-2.0.0/weird/MD5 | 129 ++-- weird-2.0.0/weird/NAMESPACE | 55 +- weird-2.0.0/weird/NEWS.md | 17 weird-2.0.0/weird/R/attach.R | 11 weird-2.0.0/weird/R/bagplot.R | 89 ++- weird-2.0.0/weird/R/conflicts.R | 46 - weird-2.0.0/weird/R/datasets.R | 39 + weird-2.0.0/weird/R/dist_density.R |only weird-2.0.0/weird/R/dist_kde.R |only weird-2.0.0/weird/R/gg_density.R |only weird-2.0.0/weird/R/gg_density_layer.R |only weird-2.0.0/weird/R/grubbs.R | 38 - weird-2.0.0/weird/R/hampel.R |only weird-2.0.0/weird/R/hdr.R | 465 +++++++---------- weird-2.0.0/weird/R/interpolation.R |only weird-2.0.0/weird/R/kde_bandwidth.R |only weird-2.0.0/weird/R/lof_scores.R | 2 weird-2.0.0/weird/R/peirce.R | 2 weird-2.0.0/weird/R/show_data.R |only weird-2.0.0/weird/R/stray.R | 8 weird-2.0.0/weird/R/surprisal_utils.R |only weird-2.0.0/weird/R/surprisals.R |only weird-2.0.0/weird/R/surprisals_data.R |only weird-2.0.0/weird/R/surprisals_models.R |only weird-2.0.0/weird/R/utils.R | 15 weird-2.0.0/weird/R/weird.R | 7 weird-2.0.0/weird/R/wine_reviews.R | 16 weird-2.0.0/weird/README.md | 334 +++++------- weird-2.0.0/weird/data/cricket_batting.rda |binary weird-2.0.0/weird/data/fr_mortality.rda |only weird-2.0.0/weird/data/oldfaithful.rda |binary weird-2.0.0/weird/inst/CITATION | 2 weird-2.0.0/weird/man/bagplot.Rd | 19 weird-2.0.0/weird/man/cricket_batting.Rd | 10 weird-2.0.0/weird/man/dist_density.Rd |only weird-2.0.0/weird/man/dist_kde.Rd |only weird-2.0.0/weird/man/fetch_wine_reviews.Rd | 12 weird-2.0.0/weird/man/figures/README-of-boxplot-1.png |binary weird-2.0.0/weird/man/figures/README-of-boxplot-2.png |binary weird-2.0.0/weird/man/figures/README-of-boxplot-3.png |binary weird-2.0.0/weird/man/figures/README-of-boxplot2-1.png |binary weird-2.0.0/weird/man/figures/README-of-boxplot2-2.png |binary weird-2.0.0/weird/man/figures/README-of-boxplot3-1.png |binary weird-2.0.0/weird/man/figures/README-of-boxplot3-2.png |binary weird-2.0.0/weird/man/figures/README-of-density-1.png |binary weird-2.0.0/weird/man/figures/README-of-density2-1.png |binary weird-2.0.0/weird/man/figures/weird-hex.png |binary weird-2.0.0/weird/man/fr_mortality.Rd |only weird-2.0.0/weird/man/gg_density.Rd |only weird-2.0.0/weird/man/gg_density_layer.Rd |only weird-2.0.0/weird/man/gg_hdrboxplot.Rd |only weird-2.0.0/weird/man/grubbs_anomalies.Rd | 4 weird-2.0.0/weird/man/hampel_anomalies.Rd |only weird-2.0.0/weird/man/hdr_table.Rd | 51 - weird-2.0.0/weird/man/kde_bandwidth.Rd | 36 - weird-2.0.0/weird/man/lof_scores.Rd | 4 weird-2.0.0/weird/man/n01.Rd | 4 weird-2.0.0/weird/man/oldfaithful.Rd | 16 weird-2.0.0/weird/man/peirce_anomalies.Rd | 3 weird-2.0.0/weird/man/reexports.Rd | 3 weird-2.0.0/weird/man/stray_anomalies.Rd | 4 weird-2.0.0/weird/man/stray_scores.Rd | 4 weird-2.0.0/weird/man/surprisals.Rd |only weird-2.0.0/weird/man/surprisals_data.Rd |only weird-2.0.0/weird/man/surprisals_model.Rd |only weird-2.0.0/weird/man/weird-package.Rd | 8 weird-2.0.0/weird/tests/testthat/surprisals.R |only weird-2.0.0/weird/tests/testthat/test_dist_density.R |only weird-2.0.0/weird/tests/testthat/test_dist_kde1.R |only weird-2.0.0/weird/tests/testthat/test_dist_kde2.R |only 87 files changed, 793 insertions(+), 693 deletions(-)
Title: Predictive (Classification and Regression) Models Homologator
Description: Methods to unify the different ways of creating predictive models and their different predictive formats for classification and regression. It includes methods such as K-Nearest Neighbors Schliep, K. P. (2004) <doi:10.5282/ubm/epub.1769>, Decision Trees Leo Breiman, Jerome H. Friedman, Richard A. Olshen, Charles J. Stone (2017) <doi:10.1201/9781315139470>, ADA Boosting Esteban Alfaro, Matias Gamez, Noelia García (2013) <doi:10.18637/jss.v054.i02>, Extreme Gradient Boosting Chen & Guestrin (2016) <doi:10.1145/2939672.2939785>, Random Forest Breiman (2001) <doi:10.1023/A:1010933404324>, Neural Networks Venables, W. N., & Ripley, B. D. (2002) <ISBN:0-387-95457-0>, Support Vector Machines Bennett, K. P. & Campbell, C. (2000) <doi:10.1145/380995.380999>, Bayesian Methods Gelman, A., Carlin, J. B., Stern, H. S., & Rubin, D. B. (1995) <doi:10.1201/9780429258411>, Linear Discriminant Analysis Venables, W. N., & Ripley, B. [...truncated...]
Author: Oldemar Rodriguez R. [aut, cre],
Andres Navarro D. [aut],
Ariel Arroyo S. [aut],
Diego Jimenez A. [aut],
Jennifer Lobo V. [aut]
Maintainer: Oldemar Rodriguez R. <oldemar.rodriguez@ucr.ac.cr>
Diff between traineR versions 2.2.10 dated 2026-01-17 and 2.2.11 dated 2026-01-27
traineR-2.2.10/traineR/man/predict.ada.prmdt.Rd |only traineR-2.2.10/traineR/man/train.ada.Rd |only traineR-2.2.10/traineR/man/varplot.Rd |only traineR-2.2.11/traineR/DESCRIPTION | 11 ++--- traineR-2.2.11/traineR/MD5 | 17 +++---- traineR-2.2.11/traineR/NAMESPACE | 5 -- traineR-2.2.11/traineR/R/Utilities.R | 14 ------ traineR-2.2.11/traineR/R/predict.R | 30 ------------- traineR-2.2.11/traineR/R/train.R | 52 ------------------------ traineR-2.2.11/traineR/R/traineR.R | 4 - traineR-2.2.11/traineR/man/traineR.Rd | 4 - 11 files changed, 17 insertions(+), 120 deletions(-)
Title: Sparse Vectors for Use in Data Frames
Description: Provides sparse vectors powered by ALTREP (Alternative
Representations for R Objects) that behave like regular vectors, and
can thus be used in data frames. Also provides tools to convert
between sparse matrices and data frames with sparse columns and
functions to interact with sparse vectors.
Author: Emil Hvitfeldt [aut, cre] ,
Davis Vaughan [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between sparsevctrs versions 0.3.5 dated 2025-12-09 and 0.3.6 dated 2026-01-27
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/type-predicates.R | 10 +++++----- src/sparse-utils.c | 4 ++-- src/sparse-utils.h | 10 ++++++++++ 6 files changed, 29 insertions(+), 15 deletions(-)
Title: Model Wrappers for Rule-Based Models
Description: Bindings for additional models for use with the 'parsnip'
package. Models include prediction rule ensembles (Friedman and
Popescu, 2008) <doi:10.1214/07-AOAS148>, C5.0 rules (Quinlan, 1992
ISBN: 1558602380), and Cubist (Kuhn and Johnson, 2013)
<doi:10.1007/978-1-4614-6849-3>.
Author: Emil Hvitfeldt [aut, cre] ,
Max Kuhn [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between rules versions 1.0.2 dated 2023-03-08 and 1.0.3 dated 2026-01-27
DESCRIPTION | 25 - LICENSE | 2 MD5 | 63 ++-- NAMESPACE | 2 NEWS.md | 4 R/C5_rules.R | 29 +- R/C5_rules_data.R | 24 - R/cubist_rules.R | 40 +- R/cubist_rules_data.R | 24 - R/rule_fit.R | 209 ++++++++------ R/rules-package.R | 45 ++- R/tidy_C5.0.R | 45 +-- R/tidy_cubist.R | 47 +-- R/tidy_xrf.R | 37 +- README.md | 6 build/partial.rdb |binary inst/WORDLIST | 29 -- man/figures/logo.png |binary man/multi_predict.Rd | 2 man/rmd/tidy-example.Rmd | 34 +- man/rules-internal.Rd | 1 man/rules-package.Rd | 2 man/tidy.cubist.Rd | 89 +++--- tests/spelling.R | 3 tests/testthat/_snaps/c5.md |only tests/testthat/_snaps/cubist.md |only tests/testthat/_snaps/rule-fit-regression.md | 11 tests/testthat/helpers.R | 116 +++++--- tests/testthat/test-c5.R | 215 +++++++++------ tests/testthat/test-cubist.R | 381 +++++++++++++++++---------- tests/testthat/test-rule-fit-binomial.R | 213 ++++++++------- tests/testthat/test-rule-fit-multinomial.R | 210 +++++++++----- tests/testthat/test-rule-fit-regression.R | 171 +++++++----- tests/testthat/test-rule_fit.R |only 34 files changed, 1254 insertions(+), 825 deletions(-)
Title: Power Analyses for Common Designs (Power to the People)
Description: Statistical power analysis for designs including t-tests, correlations,
multiple regression, ANOVA, mediation, and logistic regression. Functions accompany
Aberson (2019) <doi:10.4324/9781315171500>.
Author: Chris Aberson [aut, cre]
Maintainer: Chris Aberson <chris.aberson@gmail.com>
Diff between pwr2ppl versions 0.5.0 dated 2022-09-06 and 0.6.0 dated 2026-01-27
pwr2ppl-0.5.0/pwr2ppl/R/anc.R |only pwr2ppl-0.5.0/pwr2ppl/README.md |only pwr2ppl-0.5.0/pwr2ppl/man/anc.Rd |only pwr2ppl-0.5.0/pwr2ppl/man/packrat |only pwr2ppl-0.6.0/pwr2ppl/DESCRIPTION | 21 +- pwr2ppl-0.6.0/pwr2ppl/MD5 | 51 ++---- pwr2ppl-0.6.0/pwr2ppl/NAMESPACE | 2 pwr2ppl-0.6.0/pwr2ppl/NEWS.md |only pwr2ppl-0.6.0/pwr2ppl/R/Assumptions.R | 4 pwr2ppl-0.6.0/pwr2ppl/R/Assumptions_resample.R | 24 +- pwr2ppl-0.6.0/pwr2ppl/R/anova2x2.R | 2 pwr2ppl-0.6.0/pwr2ppl/R/d_prec.R | 4 pwr2ppl-0.6.0/pwr2ppl/R/depb.R | 2 pwr2ppl-0.6.0/pwr2ppl/R/depcorr0.R | 2 pwr2ppl-0.6.0/pwr2ppl/R/med.R | 6 pwr2ppl-0.6.0/pwr2ppl/R/propind.R | 1 pwr2ppl-0.6.0/pwr2ppl/R/win1F.R | 65 ++++--- pwr2ppl-0.6.0/pwr2ppl/R/win1Ftrends.R | 4 pwr2ppl-0.6.0/pwr2ppl/R/win1bg1.R | 97 +++++------ pwr2ppl-0.6.0/pwr2ppl/R/win2F.R | 112 +++++++------ pwr2ppl-0.6.0/pwr2ppl/R/win2Fse.R | 187 +++++++++++----------- pwr2ppl-0.6.0/pwr2ppl/man/Assumptions_resample.Rd | 14 + pwr2ppl-0.6.0/pwr2ppl/man/anova2x2.Rd | 2 pwr2ppl-0.6.0/pwr2ppl/man/d_prec.Rd | 4 pwr2ppl-0.6.0/pwr2ppl/man/depb.Rd | 2 pwr2ppl-0.6.0/pwr2ppl/man/depcorr0.Rd | 2 pwr2ppl-0.6.0/pwr2ppl/man/propind.Rd | 4 pwr2ppl-0.6.0/pwr2ppl/man/win1F.Rd | 2 28 files changed, 322 insertions(+), 292 deletions(-)
Title: Get Network Representation of an R Package
Description: Tools from the domain of graph theory can be used to quantify the complexity
and vulnerability to failure of a software package. That is the guiding philosophy
of this package. 'pkgnet' provides tools to analyze the dependencies between functions
in an R package and between its imported packages. See the pkgnet website for vignettes
and other supplementary information.
Author: Brian Burns [aut, cre],
James Lamb [aut],
Jay Qi [aut]
Maintainer: Brian Burns <brian.burns.opensource@gmail.com>
Diff between pkgnet versions 0.5.0 dated 2024-05-03 and 0.6.0 dated 2026-01-27
pkgnet-0.5.0/pkgnet/tests/testthat/testdata/graph_measures_baseballstats_DependencyReporter.csv |only pkgnet-0.5.0/pkgnet/tests/testthat/testdata/graph_measures_baseballstats_FunctionReporter.csv |only pkgnet-0.5.0/pkgnet/tests/testthat/testdata/graph_measures_milne_InheritanceReporter.csv |only pkgnet-0.5.0/pkgnet/tests/testthat/testdata/node_measures_baseballstats_DependencyReporter.csv |only pkgnet-0.5.0/pkgnet/tests/testthat/testdata/node_measures_baseballstats_FunctionReporter.csv |only pkgnet-0.5.0/pkgnet/tests/testthat/testdata/node_measures_milne_InheritanceReporter.csv |only pkgnet-0.6.0/pkgnet/DESCRIPTION | 14 - pkgnet-0.6.0/pkgnet/MD5 | 48 +-- pkgnet-0.6.0/pkgnet/NAMESPACE | 13 - pkgnet-0.6.0/pkgnet/NEWS.md | 17 + pkgnet-0.6.0/pkgnet/R/AbstractGraphReporter.R | 8 pkgnet-0.6.0/pkgnet/R/CreatePackageReport.R | 26 +- pkgnet-0.6.0/pkgnet/R/FunctionReporter.R | 4 pkgnet-0.6.0/pkgnet/R/GraphClasses.R | 24 - pkgnet-0.6.0/pkgnet/R/logging.R | 126 +++++++-- pkgnet-0.6.0/pkgnet/R/testing_utils.R | 26 ++ pkgnet-0.6.0/pkgnet/inst/package_report/package_report.Rmd | 2 pkgnet-0.6.0/pkgnet/man/DirectedGraphMeasures.Rd | 4 pkgnet-0.6.0/pkgnet/man/SimpleLogger.Rd |only pkgnet-0.6.0/pkgnet/tests/testthat/setup-logger.R | 12 pkgnet-0.6.0/pkgnet/tests/testthat/teardown-logger.R | 5 pkgnet-0.6.0/pkgnet/tests/testthat/test-0-test-package-installation.R | 7 pkgnet-0.6.0/pkgnet/tests/testthat/test-DependencyReporter-class.R | 10 pkgnet-0.6.0/pkgnet/tests/testthat/test-DirectedGraph.R | 71 ----- pkgnet-0.6.0/pkgnet/tests/testthat/test-FunctionReporter-class.R | 16 - pkgnet-0.6.0/pkgnet/tests/testthat/test-InheritanceReporter-class.R | 12 pkgnet-0.6.0/pkgnet/tests/testthat/test-Z-test-no-source-modifcations.R |only pkgnet-0.6.0/pkgnet/tests/testthat/test-logging.R | 127 ++++++++-- pkgnet-0.6.0/pkgnet/tests/testthat/test-plotting.R | 34 +- 29 files changed, 377 insertions(+), 229 deletions(-)
Title: The Multivariate Normal and t Distributions, and Their Truncated
Versions
Description: Functions are provided for computing the density and the
distribution function of multi-dimensional normal and "t" random variables,
possibly truncated (on one side or two sides), and for generating random
vectors sampled from these distributions, except sampling from the truncated
"t". Moments of arbitrary order of a multivariate truncated normal are
computed, and converted to cumulants up to order 4.
Probabilities are computed via non-Monte Carlo methods; different routines
are used in the case d=1, d=2, d=3, d>3, if d denotes the dimensionality.
Author: Adelchi Azzalini [aut, cre],
Alan Genz [aut] ,
Alan Miller [ctb] ,
Michael J. Wichura [ctb] ,
G. W. Hill [ctb] ,
Yihong Ge. [ctb]
Maintainer: Adelchi Azzalini <adelchi.azzalini@unipd.it>
Diff between mnormt versions 2.1.1 dated 2022-09-26 and 2.1.2 dated 2026-01-27
DESCRIPTION | 48 ++++++++++++++++++++++++++++++++++++------------ MD5 | 24 ++++++++++++------------ build/partial.rdb |binary inst/CITATION | 4 ++-- inst/NEWS.Rd | 20 ++++++++++++++++---- man/mnorm.Rd | 5 +++-- man/mnormt-package.Rd | 4 ++-- man/mom.mtruncnorm.Rd | 6 +++--- man/mt.Rd | 11 ++++++----- man/mtruncnorm.Rd | 4 ++-- src/rtmng.f | 12 ++++++------ src/sadmvnt.f | 2 +- src/tvpack.f | 5 +++-- 13 files changed, 92 insertions(+), 53 deletions(-)
Title: File IO for Intracranial Electroencephalography
Description: Integrated toolbox supporting common file formats used for intracranial
Electroencephalography (iEEG) and deep-brain stimulation (DBS) study.
Author: Zhengjia Wang [aut, cre]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between ieegio versions 0.0.8 dated 2026-01-11 and 0.0.9 dated 2026-01-27
ieegio-0.0.8/ieegio/R/aaa.R |only ieegio-0.0.9/ieegio/DESCRIPTION | 6 ieegio-0.0.9/ieegio/MD5 | 54 +- ieegio-0.0.9/ieegio/NEWS.md | 5 ieegio-0.0.9/ieegio/R/aaa-000.R |only ieegio-0.0.9/ieegio/R/aaa-generics-volume.R | 375 --------------- ieegio-0.0.9/ieegio/R/as_ieegio_volume.R |only ieegio-0.0.9/ieegio/R/hdf5.R | 2 ieegio-0.0.9/ieegio/R/mcp-surface.R |only ieegio-0.0.9/ieegio/R/mcp-volume.R |only ieegio-0.0.9/ieegio/R/samples.R | 9 ieegio-0.0.9/ieegio/R/zzz.R | 11 ieegio-0.0.9/ieegio/inst/doc/read-ephys.R | 8 ieegio-0.0.9/ieegio/inst/doc/read-ephys.Rmd | 10 ieegio-0.0.9/ieegio/inst/doc/read-imaging-data.R | 8 ieegio-0.0.9/ieegio/inst/doc/read-imaging-data.Rmd | 9 ieegio-0.0.9/ieegio/inst/mcp |only ieegio-0.0.9/ieegio/man/as_ieegio_volume.Rd | 2 ieegio-0.0.9/ieegio/man/io_h5_valid.Rd | 2 ieegio-0.0.9/ieegio/tests/testthat/setup.R | 1 ieegio-0.0.9/ieegio/tests/testthat/teardown.R |only ieegio-0.0.9/ieegio/tests/testthat/test-edf.R | 1 ieegio-0.0.9/ieegio/tests/testthat/test-flirt.R | 10 ieegio-0.0.9/ieegio/tests/testthat/testthat-problems.rds |only ieegio-0.0.9/ieegio/vignettes/read-ephys.Rmd | 10 ieegio-0.0.9/ieegio/vignettes/read-imaging-data.Rmd | 9 26 files changed, 127 insertions(+), 405 deletions(-)
Title: Interface for the 'Finnish Biodiversity Information Facility'
API
Description: A programmatic interface to the 'Finnish Biodiversity Information
Facility' ('FinBIF') API (<https://api.laji.fi>). 'FinBIF' aggregates
Finnish biodiversity data from multiple sources in a single open access
portal for researchers, citizen scientists, industry and government.
'FinBIF' allows users of biodiversity information to find, access, combine
and visualise data on Finnish plants, animals and microorganisms. The
'finbif' package makes the publicly available data in 'FinBIF' easily
accessible to programmers. Biodiversity information is available on taxonomy
and taxon occurrence. Occurrence data can be filtered by taxon, time,
location and other variables. The data accessed are conveniently
preformatted for subsequent analyses.
Author: Finnish Museum of Natural History - Luomus [cph] ,
Finnish Biodiversity Information Facility [cph] ,
William K. Morris [aut, cre]
Maintainer: William K. Morris <willi@mmorris.email>
Diff between finbif versions 0.9.11 dated 2025-08-22 and 0.9.12 dated 2026-01-27
DESCRIPTION | 8 LICENSE | 2 MD5 | 88 NAMESPACE | 1 NEWS.md | 5 R/api_get.R | 2 R/finbif_collections.R | 19 R/finbif_occurrence_load.R | 24 R/finbif_request_token.R | 24 R/sysdata.rda |binary README.md | 4 build/vignette.rds |binary inst/doc/finbif.html | 5 inst/doc/v02_occurrence_data.html | 5 inst/doc/v03_selecting_variables.html | 5 inst/doc/v04_metadata.html | 5 inst/doc/v05_filtering.html | 5 man/finbif-package.Rd | 4 man/finbif_request_token.Rd | 8 tests/fixtures/finbif_cache_db_timeout.yml | 73 tests/fixtures/finbif_cache_file_timeout.yml | 73 tests/fixtures/finbif_cache_timeout.yml | 73 tests/fixtures/finbif_check_taxa.yml | 16 tests/fixtures/finbif_collections.yml |12482 +++------ tests/fixtures/finbif_informal_groups.yml | 12 tests/fixtures/finbif_last_mod1.yml | 9 tests/fixtures/finbif_last_mod2.yml | 9 tests/fixtures/finbif_last_mod3.yml | 9 tests/fixtures/finbif_metadata.yml | 538 tests/fixtures/finbif_occurrence.yml |12983 +++------- tests/fixtures/finbif_occurrence_aggregate.yml | 51 tests/fixtures/finbif_occurrence_api_error.yml | 7 tests/fixtures/finbif_occurrence_compute_var_from_id_zero_rows.yml |12519 +++------ tests/fixtures/finbif_occurrence_dates.yml | 158 tests/fixtures/finbif_occurrence_load.yml | 161 tests/fixtures/finbif_occurrence_print.yml | 23 tests/fixtures/finbif_occurrence_select_local_area.yml | 9 tests/fixtures/finbif_taxa.yml | 22 tests/testthat/_snaps/caching.md | 84 tests/testthat/_snaps/finbif_collections.md | 530 tests/testthat/_snaps/finbif_metadata.md | 2 tests/testthat/_snaps/finbif_occurrence.md | 92 tests/testthat/_snaps/finbif_occurrence_load.md | 96 tests/testthat/test-finbif_informal_groups.R | 2 tests/testthat/test-finbif_request_token.R | 11 45 files changed, 15602 insertions(+), 24656 deletions(-)
Title: Exponential Integral and Incomplete Gamma Function
Description: The exponential integrals E_1(x), E_2(x), E_n(x) and
Ei(x), and the incomplete gamma function G(a, x) defined for
negative values of its first argument. The package also gives easy
access to the underlying C routines through an API; see the package
vignette for details. A test package included in sub-directory
example_API provides an implementation. C routines derived from the
GNU Scientific Library <https://www.gnu.org/software/gsl/>.
Author: Vincent Goulet [cre, aut],
Gerard Jungman [aut] ,
Brian Gough [aut] ,
Jeffrey A. Ryan [aut] ,
Robert Gentleman [aut] ,
Ross Ihaka [aut] ,
R Core Team [aut] ,
R Foundation [aut]
Maintainer: Vincent Goulet <vincent.goulet@act.ulaval.ca>
Diff between expint versions 0.2-0 dated 2026-01-19 and 0.2-1 dated 2026-01-27
DESCRIPTION | 9 - MD5 | 20 +-- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 9 + inst/doc/expint.R | 57 +++++++-- inst/doc/expint.Rnw | 296 +++++++++++++++++++++++++++++++++++++++++++-------- inst/doc/expint.pdf |binary src/gamma_inc.c | 4 vignettes/expint.Rnw | 296 +++++++++++++++++++++++++++++++++++++++++++-------- vignettes/expint.bib | 50 ++++---- 11 files changed, 598 insertions(+), 143 deletions(-)
Title: Business Process Analysis in R
Description: Comprehensive Business Process Analysis toolkit. Creates S3-class for event log objects, and related handler functions. Imports related packages for filtering event data, computation of descriptive statistics, handling of 'Petri Net' objects and visualization of process maps. See also packages 'edeaR','processmapR', 'eventdataR' and 'processmonitR'.
Author: Benoît Depaire [cre],
Gert Janssenswillen [aut],
Gerard van Hulzen [ctb],
Felix Mannhardt [ctb],
Niels Martin [ctb],
Greg Van Houdt [ctb],
Hasselt University [cph]
Maintainer: Benoît Depaire <benoit.depaire@uhasselt.be>
Diff between bupaR versions 1.0.0 dated 2025-12-01 and 1.0.1 dated 2026-01-27
bupaR-1.0.0/bupaR/man/fill.Rd |only bupaR-1.0.1/bupaR/DESCRIPTION | 6 +++--- bupaR-1.0.1/bupaR/MD5 | 9 ++++----- bupaR-1.0.1/bupaR/R/fill.R | 5 ----- bupaR-1.0.1/bupaR/man/group_by_trace.Rd | 30 +++++++++++++++--------------- bupaR-1.0.1/bupaR/man/reexports.Rd | 5 ++++- 6 files changed, 26 insertions(+), 29 deletions(-)
Title: Convert Statistical Objects into Tidy Tibbles
Description: Summarizes key information about statistical objects in tidy
tibbles. This makes it easy to report results, create plots and
consistently work with large numbers of models at once. Broom
provides three verbs that each provide different types of information
about a model. tidy() summarizes information about model components
such as coefficients of a regression. glance() reports information
about an entire model, such as goodness of fit measures like AIC and
BIC. augment() adds information about individual observations to a
dataset, such as fitted values or influence measures.
Author: David Robinson [aut],
Alex Hayes [aut] ,
Simon Couch [aut] ,
Emil Hvitfeldt [aut, cre] ,
Posit Software, PBC [cph, fnd] ,
Indrajeet Patil [ctb] ,
Derek Chiu [ctb],
Matthieu Gomez [ctb],
Boris Demeshev [ctb],
Dieter Menne [ctb],
Benjamin Nutter [ctb], [...truncated...]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between broom versions 1.0.11 dated 2025-12-04 and 1.0.12 dated 2026-01-27
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 4 ++++ R/deprecated-0-7-0.R | 2 +- R/utilities.R | 1 + build/vignette.rds |binary inst/doc/adding-tidiers.html | 4 ++-- inst/doc/available-methods.html | 4 ++-- inst/doc/bootstrapping.html | 4 ++-- inst/doc/broom.html | 10 +++++----- inst/doc/broom_and_dplyr.html | 4 ++-- 11 files changed, 32 insertions(+), 27 deletions(-)