Title: Conduct Additional Modeling and Analysis for 'seminr'
Description: Supplemental functions for estimating and analysing structural equation models including Cross Validated Prediction and Testing (CVPAT, Liengaard et al., 2021 <doi:10.1111/deci.12445>).
Author: Nicholas Patrick Danks [aut, cre],
Soumya Ray [aut, ths]
Maintainer: Nicholas Patrick Danks <nicholasdanks@hotmail.com>
Diff between seminrExtras versions 0.2.0 dated 2025-09-03 and 0.9.0 dated 2026-01-29
seminrExtras-0.2.0/seminrExtras/demo/seminr-workbook-v2-chap2.R |only seminrExtras-0.2.0/seminrExtras/demo/seminr-workbook-v2-chap3.R |only seminrExtras-0.2.0/seminrExtras/demo/seminr-workbook-v2-chap4.R |only seminrExtras-0.2.0/seminrExtras/demo/seminr-workbook-v2-chap5.R |only seminrExtras-0.2.0/seminrExtras/demo/seminr-workbook-v2-chap6.R |only seminrExtras-0.2.0/seminrExtras/demo/seminr-workbook-v2-chap7.R |only seminrExtras-0.2.0/seminrExtras/demo/seminr-workbook-v2-chap8.R |only seminrExtras-0.9.0/seminrExtras/DESCRIPTION | 18 seminrExtras-0.9.0/seminrExtras/MD5 | 42 +- seminrExtras-0.9.0/seminrExtras/NAMESPACE | 1 seminrExtras-0.9.0/seminrExtras/R/feature_congruence.R |only seminrExtras-0.9.0/seminrExtras/R/feature_cvpat.R | 110 +++-- seminrExtras-0.9.0/seminrExtras/README.md |only seminrExtras-0.9.0/seminrExtras/demo/00Index | 14 seminrExtras-0.9.0/seminrExtras/demo/seminr-help-debugging.R | 20 - seminrExtras-0.9.0/seminrExtras/demo/seminr-primer-v2-chap2.R |only seminrExtras-0.9.0/seminrExtras/demo/seminr-primer-v2-chap3.R |only seminrExtras-0.9.0/seminrExtras/demo/seminr-primer-v2-chap4.R |only seminrExtras-0.9.0/seminrExtras/demo/seminr-primer-v2-chap5.R |only seminrExtras-0.9.0/seminrExtras/demo/seminr-primer-v2-chap6.R |only seminrExtras-0.9.0/seminrExtras/demo/seminr-primer-v2-chap7.R |only seminrExtras-0.9.0/seminrExtras/demo/seminr-primer-v2-chap8.R |only seminrExtras-0.9.0/seminrExtras/inst/doc/SEMinRExtras.R | 23 - seminrExtras-0.9.0/seminrExtras/inst/doc/SEMinRExtras.Rmd | 74 ++- seminrExtras-0.9.0/seminrExtras/inst/doc/SEMinRExtras.html | 190 ++++++---- seminrExtras-0.9.0/seminrExtras/man/assess_cvpat.Rd | 4 seminrExtras-0.9.0/seminrExtras/man/assess_cvpat_compare.Rd | 55 ++ seminrExtras-0.9.0/seminrExtras/man/congruence_test.Rd |only seminrExtras-0.9.0/seminrExtras/vignettes/SEMinRExtras.Rmd | 74 ++- seminrExtras-0.9.0/seminrExtras/vignettes/SEMinR_logo.jpg |only seminrExtras-0.9.0/seminrExtras/vignettes/comp_mod.png |only seminrExtras-0.9.0/seminrExtras/vignettes/est_mod.png |only 32 files changed, 401 insertions(+), 224 deletions(-)
Title: Isotope Pattern, Profile and Centroid Calculation for Mass
Spectrometry
Description: Fast and very memory-efficient calculation of isotope patterns,
subsequent convolution to theoretical envelopes (profiles) plus valley
detection and centroidization or intensoid calculation. Batch processing,
resolution interpolation, wrapper, adduct calculations and molecular
formula parsing.
Loos, M., Gerber, C., Corona, F., Hollender, J., Singer, H. (2015)
<doi:10.1021/acs.analchem.5b00941>.
Author: Martin Loos [aut, cre],
Christian Gerber [aut]
Maintainer: Martin Loos <mloos@envibee.ch>
Diff between enviPat versions 2.6 dated 2022-10-21 and 2.8 dated 2026-01-29
DESCRIPTION | 20 ++++++---- MD5 | 23 ++++++----- NEWS |only R/enviPat.R | 6 ++- R/getR.R | 37 ++++++++---------- R/isopattern.R | 2 - R/isowrap.R | 94 ++++++++++++++++++++++++----------------------- data/resolution_list.rda |binary man/getR.Rd | 2 - man/isopattern.Rd | 2 - man/isowrap.Rd | 8 ++-- man/resolution_list.Rd | 8 +++- src/main.c | 13 ++++-- 13 files changed, 117 insertions(+), 98 deletions(-)
Title: Broadly Useful Convenient and Efficient R Functions
Description: Broadly useful convenient and efficient R functions
that bring users concise and elegant R data analyses.
This package includes easy-to-use functions for
(1) basic R programming
(e.g., set working directory to the path of currently opened file;
import/export data from/to files in any format;
print tables to Microsoft Word);
(2) multivariate computation
(e.g., compute scale sums/means/... with reverse scoring);
(3) reliability analyses and factor analyses;
(4) descriptive statistics and correlation analyses;
(5) t-test, multi-factor analysis of variance (ANOVA),
simple-effect analysis, and post-hoc multiple comparison;
(6) tidy report of statistical models
(to R Console and Microsoft Word);
(7) mediation and moderation analyses (PROCESS);
and (8) additional toolbox for statistics and graphics.
Author: Han Wu Shuang Bao [aut, cre]
Maintainer: Han Wu Shuang Bao <baohws@foxmail.com>
Diff between bruceR versions 2025.11 dated 2025-12-09 and 2026.1 dated 2026-01-29
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/bruceR-stats_1_basic.R | 4 ++++ R/bruceR-stats_2_scale.R | 2 +- man/TTEST.Rd | 3 +++ 6 files changed, 21 insertions(+), 10 deletions(-)
Title: A Package for Displaying Visual Scenes as They May Appear to an
Animal with Lower Acuity
Description: This code provides a simple method for representing a visual scene as it may be seen by an animal with less acute vision. When using (or for more information), please cite the original publication.
Author: Eleanor Caves [aut, cre],
Soenke Johnsen [aut]
Maintainer: Eleanor Caves <eleanor.caves@gmail.com>
Diff between AcuityView versions 0.1 dated 2017-05-09 and 1.1.1 dated 2026-01-29
DESCRIPTION | 25 +- MD5 | 11 - NAMESPACE | 1 R/AcuityView.R | 510 +++++++++++++++++------------------------------- R/fft_matrix_shift.R |only man/AcuityView.Rd | 39 ++- man/fft_matrix_shift.Rd | 17 + 7 files changed, 248 insertions(+), 355 deletions(-)
Title: Spatially and Temporally Varying Coefficient Models Using
Generalized Additive Models
Description: A framework for undertaking space and time varying coefficient models (varying parameter models) using a Generalized Additive Model (GAM) with smooths approach. The framework suggests the need to investigate for the presence and nature of any space-time dependencies in the data. It proposes a workflow that creates and refines an initial space-time GAM and includes tools to create and evaluate multiple model forms. The workflow sequence is to: i) Prepare the data by lengthening it to have a single location and time variables for each observation. ii) Create all possible space and/or time models in which each predictor is specified in different ways in smooths. iii) Evaluate each model via their AIC value and pick the best one. iv) Create the final model. v) Calculate the varying coefficient estimates to quantify how the relationships between the target and predictor variables vary over space, time or space-time. vi) Create maps, time series plots etc. The number of knots used in each sm [...truncated...]
Author: Lex Comber [aut, cre],
Paul Harris [ctb],
Gonzalo Irisarri [ctb],
Chris Brunsdon [ctb]
Maintainer: Lex Comber <a.comber@leeds.ac.uk>
Diff between stgam versions 1.1.0 dated 2025-08-27 and 1.2.0 dated 2026-01-29
stgam-1.1.0/stgam/data/hp_data.rda |only stgam-1.1.0/stgam/data/lb.rda |only stgam-1.1.0/stgam/inst/doc/space-time-gam-intro_rev.R |only stgam-1.1.0/stgam/inst/doc/space-time-gam-intro_rev.Rmd |only stgam-1.1.0/stgam/inst/doc/space-time-gam-intro_rev.html |only stgam-1.1.0/stgam/man/hp_data.Rd |only stgam-1.1.0/stgam/man/lb.Rd |only stgam-1.1.0/stgam/vignettes/space-time-gam-intro_rev.Rmd |only stgam-1.2.0/stgam/DESCRIPTION | 16 stgam-1.2.0/stgam/MD5 | 55 + stgam-1.2.0/stgam/NAMESPACE | 14 stgam-1.2.0/stgam/NEWS.md | 11 stgam-1.2.0/stgam/R/calculate_vcs.R | 91 ++- stgam-1.2.0/stgam/R/data.R | 53 - stgam-1.2.0/stgam/R/effect_size.R |only stgam-1.2.0/stgam/R/evaluate_models.R | 420 +++++++++++---- stgam-1.2.0/stgam/R/gam_model_rank.R | 117 +++- stgam-1.2.0/stgam/README.md | 40 - stgam-1.2.0/stgam/build/vignette.rds |binary stgam-1.2.0/stgam/data/chaco.rda |only stgam-1.2.0/stgam/inst/doc/stgam_intro_chaco.R |only stgam-1.2.0/stgam/inst/doc/stgam_intro_chaco.Rmd |only stgam-1.2.0/stgam/inst/doc/stgam_intro_chaco.html |only stgam-1.2.0/stgam/inst/doc/stgam_vc_models_chaco.R |only stgam-1.2.0/stgam/inst/doc/stgam_vc_models_chaco.Rmd |only stgam-1.2.0/stgam/inst/doc/stgam_vc_models_chaco.html |only stgam-1.2.0/stgam/man/calculate_vcs.Rd | 12 stgam-1.2.0/stgam/man/chaco.Rd |only stgam-1.2.0/stgam/man/effect_size.Rd |only stgam-1.2.0/stgam/man/evaluate_models.Rd | 90 ++- stgam-1.2.0/stgam/man/gam_model_rank.Rd | 29 - stgam-1.2.0/stgam/man/stgam-package.Rd | 3 stgam-1.2.0/stgam/vignettes/appraise_plot_1.png |only stgam-1.2.0/stgam/vignettes/appraise_plot_2.png |only stgam-1.2.0/stgam/vignettes/appraise_plot_3.png |only stgam-1.2.0/stgam/vignettes/appraise_plot_4.png |only stgam-1.2.0/stgam/vignettes/model_summaries.RData |only stgam-1.2.0/stgam/vignettes/stgam_intro_chaco.Rmd |only stgam-1.2.0/stgam/vignettes/stgam_vc_models_chaco.Rmd |only stgam-1.2.0/stgam/vignettes/stvc_mods.RData |binary stgam-1.2.0/stgam/vignettes/vignette.bib | 80 ++ 41 files changed, 764 insertions(+), 267 deletions(-)
Title: Using Cytogenetics Data in R
Description: Defines classes and methods to process text-based
cytogenetics using the CytoGPS web site, then import the results
into R for further analysis and graphing.
Author: Kevin R. Coombes [aut, cre],
Dwayne Tally [aut]
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between RCytoGPS versions 1.2.9 dated 2025-04-08 and 1.2.10 dated 2026-01-29
DESCRIPTION | 8 MD5 | 18 - R/sysdata.rda |binary build/vignette.rds |binary data/cytoData.rda |binary data/cytobandLocations.rda |binary inst/doc/Gallery.html | 409 ++++++++++++++++-------------------- inst/doc/IntroRCytoGPS.html | 437 +++++++++++++++++---------------------- tests/test101-preclean.R | 8 tests/test101-preclean.Rout.save | 20 + 10 files changed, 416 insertions(+), 484 deletions(-)
Title: Statistical Tests for the Production of Reference Materials
Description: The production of certified reference materials (CRMs) requires
various statistical tests depending on the task and recorded data to ensure
that reported values of CRMs are appropriate.
Often these tests are performed according to the procedures described in
'ISO GUIDE 35:2017'. The 'eCerto' package contains a 'Shiny' app which
provides functionality to load, process, report and backup data recorded
during CRM production and facilitates following the recommended procedures.
It is described in Lisec et al (2023) <doi:10.1007/s00216-023-05099-3> and
can also be accessed online <https://apps.bam.de/shn00/eCerto/> without
package installation.
Author: Jan Lisec [cre, aut] ,
Frederik Kress [ctb]
Maintainer: Jan Lisec <jan.lisec@bam.de>
Diff between eCerto versions 0.8.5 dated 2025-03-28 and 0.8.11 dated 2026-01-29
eCerto-0.8.11/eCerto/DESCRIPTION | 22 eCerto-0.8.11/eCerto/MD5 | 119 ++-- eCerto-0.8.11/eCerto/NAMESPACE | 3 eCerto-0.8.11/eCerto/NEWS.md | 20 eCerto-0.8.11/eCerto/R/app_data.R | 7 eCerto-0.8.11/eCerto/R/app_server.R | 1 eCerto-0.8.11/eCerto/R/app_ui.R | 75 +- eCerto-0.8.11/eCerto/R/app_utils.R | 284 +++++++++ eCerto-0.8.11/eCerto/R/fnc_CertValPlot.R | 2 eCerto-0.8.11/eCerto/R/fnc_plot_lts_data.R | 2 eCerto-0.8.11/eCerto/R/fnc_prepFigH1.R | 3 eCerto-0.8.11/eCerto/R/fnc_prepTabH1.R | 4 eCerto-0.8.11/eCerto/R/fnc_prepTabS1.R | 4 eCerto-0.8.11/eCerto/R/fnc_prepTabV1.R | 6 eCerto-0.8.11/eCerto/R/fnc_read_Vdata.R | 2 eCerto-0.8.11/eCerto/R/fnc_read_drmd_xml.R | 36 + eCerto-0.8.11/eCerto/R/fnc_read_lts_input.R | 10 eCerto-0.8.11/eCerto/R/fnc_read_zenodo.R | 116 +++- eCerto-0.8.11/eCerto/R/fnc_scheffe.test.R | 2 eCerto-0.8.11/eCerto/R/fnc_show_help.R | 11 eCerto-0.8.11/eCerto/R/fnc_steyx.R | 2 eCerto-0.8.11/eCerto/R/fnc_styleTabD1.R | 26 eCerto-0.8.11/eCerto/R/fnc_styleTabD2.R | 38 - eCerto-0.8.11/eCerto/R/fnc_styleTabD3.R | 17 eCerto-0.8.11/eCerto/R/m_ExcelUpload.R | 47 + eCerto-0.8.11/eCerto/R/m_check_stability.R | 12 eCerto-0.8.11/eCerto/R/m_report.R | 96 --- eCerto-0.8.11/eCerto/R/m_stability_arrhenius.R | 2 eCerto-0.8.11/eCerto/R/m_xlsx_range_select.R | 89 --- eCerto-0.8.11/eCerto/R/page_DRMD.R | 76 -- eCerto-0.8.11/eCerto/R/page_LTS.R | 127 +--- eCerto-0.8.11/eCerto/R/page_homogeneity.R | 50 - eCerto-0.8.11/eCerto/R/page_stability.R | 51 - eCerto-0.8.11/eCerto/R/page_validation.R | 157 ++--- eCerto-0.8.11/eCerto/R/reactiveClass.R | 2 eCerto-0.8.11/eCerto/R/run_app.R | 2 eCerto-0.8.11/eCerto/R/statistic_helper.R | 4 eCerto-0.8.11/eCerto/R/utils_drmd.R | 287 ++++++---- eCerto-0.8.11/eCerto/data/BAMlogo_raster.rda |only eCerto-0.8.11/eCerto/inst/app/www/reports/report_styles.ccs |only eCerto-0.8.11/eCerto/inst/app/www/reports/report_vorlage_lts.Rmd | 52 - eCerto-0.8.11/eCerto/inst/app/www/rmd/certification_tests.Rmd | 7 eCerto-0.8.11/eCerto/inst/app/www/rmd/help_start.Rmd | 16 eCerto-0.8.11/eCerto/inst/extdata/drmd |only eCerto-0.8.11/eCerto/man/BAMlogo_raster.Rd |only eCerto-0.8.11/eCerto/man/ldply_base.Rd |only eCerto-0.8.11/eCerto/man/run_app.Rd | 2 eCerto-0.8.11/eCerto/man/steyx.Rd | 2 eCerto-0.8.11/eCerto/tests/testthat.R | 5 eCerto-0.8.11/eCerto/tests/testthat/helper-skip.R |only eCerto-0.8.11/eCerto/tests/testthat/test-app_ui.R |only eCerto-0.8.11/eCerto/tests/testthat/test-app_utils.R | 29 + eCerto-0.8.11/eCerto/tests/testthat/test-fnc_CertValPlot.R | 2 eCerto-0.8.11/eCerto/tests/testthat/test-fnc_plot_lts_data.R | 5 eCerto-0.8.11/eCerto/tests/testthat/test-fnc_prepFigV2.R | 2 eCerto-0.8.11/eCerto/tests/testthat/test-fnc_prepFigV3.R | 2 eCerto-0.8.11/eCerto/tests/testthat/test-fnc_read_zenodo.R | 16 eCerto-0.8.11/eCerto/tests/testthat/test-fnc_styleTabDx.R |only eCerto-0.8.11/eCerto/tests/testthat/test-page_DRMD.R |only eCerto-0.8.11/eCerto/tests/testthat/test-page_LTS.R |only eCerto-0.8.11/eCerto/tests/testthat/test-page_validation.R |only eCerto-0.8.11/eCerto/tests/testthat/test-utils_drmd.R |only eCerto-0.8.11/eCerto/tests/testthat/test-validation.R | 4 eCerto-0.8.5/eCerto/R/fnc_xml2df.R |only eCerto-0.8.5/eCerto/tests/testthat/test-page_start.R |only eCerto-0.8.5/eCerto/tests/testthat/test-run_app.R |only 66 files changed, 1078 insertions(+), 880 deletions(-)
Title: Access and Analyse Data from the 'CVD Prevent' API
Description: Provides an R interface to the 'CVD Prevent' application
programming interface (API), allowing users to retrieve and analyse
cardiovascular disease prevention data from primary care records
across England. The Cardiovascular Disease Prevention Audit
(CVDPREVENT) automatically extracts routinely held GP health data to
support national reporting and improvement initiatives. See the API
documentation for details:
<https://bmchealthdocs.atlassian.net/wiki/spaces/CP/pages/317882369/CVDPREVENT+API+Documentation>.
Author: Craig Parylo [aut, cre, cph] ,
Cardiovascular Disease Prevention Audit [ant]
Maintainer: Craig Parylo <craig.parylo2@nhs.net>
Diff between cvdprevent versions 0.2.4 dated 2025-11-11 and 0.2.5 dated 2026-01-29
DESCRIPTION | 10 MD5 | 24 NEWS.md | 13 R/cvd_api_functions.R | 2 R/cvd_api_helpers.R | 17 R/scratchpad.R | 24 R/utils.R | 3 README.md | 8 inst/doc/using_cvdprevent.R | 48 inst/doc/using_cvdprevent.Rmd | 48 inst/doc/using_cvdprevent.html | 4331 ++++++++++++++++++++--------------------- man/cvd_area_system_level.Rd | 2 vignettes/using_cvdprevent.Rmd | 48 13 files changed, 2339 insertions(+), 2239 deletions(-)
Title: Make, Update, and Query Binary Causal Models
Description: Users can declare causal models over binary nodes, update beliefs about causal types given data, and calculate arbitrary queries. Updating is implemented in 'stan'. See Humphreys and Jacobs, 2023, Integrated Inferences (<DOI: 10.1017/9781316718636>) and Pearl, 2009 Causality (<DOI:10.1017/CBO9780511803161>).
Author: Clara Bicalho [ctb],
Jasper Cooper [ctb],
Macartan Humphreys [aut] ,
Till Tietz [aut, cre] ,
Alan Jacobs [aut],
Merlin Heidemanns [ctb],
Lily Medina [aut] ,
Julio Solis [ctb],
Georgiy Syunyaev [aut] ,
Moritz Marbach [ctb]
Maintainer: Till Tietz <ttietz2014@gmail.com>
Diff between CausalQueries versions 1.4.4 dated 2025-12-20 and 1.4.5 dated 2026-01-29
DESCRIPTION | 8 MD5 | 12 NEWS.md | 7 inst/stan/simplexes.stan | 71 ++- src/stanExports_simplexes.cc | 34 - src/stanExports_simplexes.h | 860 +++++++++++++++++++++---------------- tests/testthat/test_update_model.R | 15 7 files changed, 598 insertions(+), 409 deletions(-)
Title: Variance Estimation for Sample Surveys by the Ultimate Cluster
Method
Description: Generation of domain variables, linearization of several non-linear population statistics (the ratio of two totals, weighted income percentile, relative median income ratio, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, the aggregate replacement ratio, the relative median income ratio, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow, Sample Survey Methods And Theory, vol. I: Methods and Applications; vol. II: Theory. 1953, New York: John Wiley and Sons), variance estimation for longitudinal, cross-sectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y. G., 2015, <doi:10.1111/rssa.12116>). Several other precision measures are derived - standard error, the coef [...truncated...]
Author: Juris Breidaks [aut],
Martins Liberts [aut],
Jelena Voronova [cre],
Santa Ivanova [aut],
Aleksis Jursevskis [ctb],
Anthony Damico [ctb],
Liliana Roze [ctb],
Central Statistical Bureau of Latvia [cph, fnd]
Maintainer: Jelena Voronova <jelena.voronova@csp.gov.lv>
Diff between vardpoor versions 0.20.1 dated 2020-11-30 and 0.21.0 dated 2026-01-29
vardpoor-0.20.1/vardpoor/LICENSE |only vardpoor-0.21.0/vardpoor/DESCRIPTION | 29 vardpoor-0.21.0/vardpoor/MD5 | 65 vardpoor-0.21.0/vardpoor/NEWS.md | 7 vardpoor-0.21.0/vardpoor/R/domain.R | 2 vardpoor-0.21.0/vardpoor/R/lingini2.R | 2 vardpoor-0.21.0/vardpoor/R/lingpg.R | 2 vardpoor-0.21.0/vardpoor/R/var_srs.R | 4 vardpoor-0.21.0/vardpoor/R/vardannual.R | 333 +- vardpoor-0.21.0/vardpoor/R/vardchanges.R | 6 vardpoor-0.21.0/vardpoor/R/vardchangespoor.R | 6 vardpoor-0.21.0/vardpoor/R/vardchangstrs.R | 78 vardpoor-0.21.0/vardpoor/R/vardcros.R | 1232 +++++----- vardpoor-0.21.0/vardpoor/R/vardcrospoor.R | 84 vardpoor-0.21.0/vardpoor/R/vardom.R | 6 vardpoor-0.21.0/vardpoor/R/vardom_othstr.R | 2 vardpoor-0.21.0/vardpoor/R/vardomh.R | 6 vardpoor-0.21.0/vardpoor/R/variance_est.R | 6 vardpoor-0.21.0/vardpoor/R/varpoord.R | 10 vardpoor-0.21.0/vardpoor/build |only vardpoor-0.21.0/vardpoor/man/lingini2.Rd | 2 vardpoor-0.21.0/vardpoor/man/lingpg.Rd | 2 vardpoor-0.21.0/vardpoor/man/var_srs.Rd | 4 vardpoor-0.21.0/vardpoor/man/vardannual.Rd | 330 +- vardpoor-0.21.0/vardpoor/man/vardchanges.Rd | 6 vardpoor-0.21.0/vardpoor/man/vardchangespoor.Rd | 6 vardpoor-0.21.0/vardpoor/man/vardchangstrs.Rd | 25 vardpoor-0.21.0/vardpoor/man/vardcros.Rd | 47 vardpoor-0.21.0/vardpoor/man/vardcrospoor.Rd | 86 vardpoor-0.21.0/vardpoor/man/vardom.Rd | 6 vardpoor-0.21.0/vardpoor/man/vardom_othstr.Rd | 4 vardpoor-0.21.0/vardpoor/man/vardomh.Rd | 6 vardpoor-0.21.0/vardpoor/man/variance_est.Rd | 6 vardpoor-0.21.0/vardpoor/man/varpoord.Rd | 12 vardpoor-0.21.0/vardpoor/tests/testthat/test_vardom_vardomh_2levels.R |only 35 files changed, 1365 insertions(+), 1057 deletions(-)
Title: High Performance Tools for Combinatorics and Computational
Mathematics
Description: Provides optimized functions and flexible iterators implemented in
C++ for solving problems in combinatorics and computational mathematics.
Handles various combinatorial objects including combinations, permutations,
integer partitions and compositions, Cartesian products, unordered
Cartesian products, and partition of groups. Utilizes the RMatrix class
from 'RcppParallel' for thread safety. The combination and permutation
functions contain constraint parameters that allow for generation of all
results of a vector meeting specific criteria (e.g. finding all
combinations such that the sum is between two bounds). Capable of
ranking/unranking combinatorial objects efficiently (e.g. retrieve only the
nth lexicographical result) which sets up nicely for parallelization as
well as random sampling. Gmp support permits exploration where the total
number of results is large (e.g. comboSample(10000, 500, n = 4)).
Additionally, there are several high performance number theoretic
functions that are [...truncated...]
Author: Joseph Wood [aut, cre]
Maintainer: Joseph Wood <jwood000@gmail.com>
Diff between RcppAlgos versions 2.9.3 dated 2025-02-03 and 2.9.5 dated 2026-01-29
DESCRIPTION | 9 +++--- MD5 | 45 ++++++++++++++++---------------- NEWS.md | 19 ++++++++++++- README.md | 4 +- build/vignette.rds |binary inst/CITATION |only inst/NEWS.Rd | 25 ++++++++++++++++- inst/doc/CombPermConstraints.html | 5 ++- inst/doc/CombinatorialSampling.html | 5 ++- inst/doc/CombinatoricsIterators.html | 5 ++- inst/doc/ComputationalMathematics.html | 5 ++- inst/doc/GeneralCombinatorics.Rmd | 4 +- inst/doc/GeneralCombinatorics.html | 9 +++--- inst/doc/HighPerformanceBenchmarks.html | 5 ++- inst/doc/OtherCombinatorics.Rmd | 2 - inst/doc/OtherCombinatorics.html | 7 ++-- inst/doc/SubsetSum.html | 5 ++- man/combinatoricsGeneral.Rd | 2 - man/comboGroups.Rd | 2 - man/stdThreadMax.Rd | 2 - src/SetUpUtils.cpp | 11 +++++++ tests/testthat/testErrors.R | 3 +- vignettes/GeneralCombinatorics.Rmd | 4 +- vignettes/OtherCombinatorics.Rmd | 2 - 24 files changed, 118 insertions(+), 62 deletions(-)
Title: Comprehensive and Easy to Use Quality Control of GWAS Results
Description: When evaluating the results of a genome-wide association study (GWAS), it is important to perform a quality control to ensure that the results are valid, complete, correctly formatted, and, in case of meta-analysis, consistent with other studies that have applied the same analysis. This package was developed to facilitate and streamline this process and provide the user with a comprehensive report.
Author: Alireza Ani [aut, cre],
Peter J. van der Most [aut],
Ahmad Vaez [aut],
Ilja M. Nolte [aut]
Maintainer: Alireza Ani <a.ani@umcg.nl>
Diff between GWASinspector versions 1.7.3 dated 2025-03-30 and 1.7.4 dated 2026-01-29
ChangeLog | 6 ++- DESCRIPTION | 17 ++++------ MD5 | 36 ++++++++++----------- NAMESPACE | 4 +- NEWS | 4 ++ R/GWASinspector.R | 2 - R/aaa.R | 2 - R/fileFunctions.R | 6 ++- R/headerRelatedFunctions.R | 7 +++- R/loggerFunctions.R | 10 ++--- R/manhattanPlotFunction.R | 8 ++-- R/studyFunctions.R | 7 +++- R/uploadInputFile.R | 14 +++++++- R/variantModifierFunctions.R | 6 ++- inst/doc/GWASinspector.R | 8 ---- inst/doc/GWASinspector.Rmd | 21 ++---------- inst/doc/GWASinspector.html | 73 +++++++++++++++++++------------------------ man/GWASinspector.Rd | 2 - vignettes/GWASinspector.Rmd | 21 ++---------- 19 files changed, 126 insertions(+), 128 deletions(-)
Title: Visualize the Effect of a Continuous Variable on a Time-to-Event
Outcome
Description: Graphically display the (causal) effect of a continuous variable on a time-to-event outcome
using multiple different types of plots based on g-computation. Those functions
include, among others, survival area plots, survival contour plots, survival quantile plots and
3D surface plots. Due to the use of g-computation, all plot allow confounder-adjustment naturally.
For details, see Robin Denz, Nina Timmesfeld (2023) <doi:10.1097/EDE.0000000000001630>.
Author: Robin Denz [aut, cre]
Maintainer: Robin Denz <robin.denz@rub.de>
Diff between contsurvplot versions 0.2.2 dated 2025-07-24 and 0.2.3 dated 2026-01-29
DESCRIPTION | 6 MD5 | 90 +++--- NEWS.md | 15 + R/curve_cont_auc.r | 132 +++++++--- R/plot_surv_3Dsurface.r | 7 R/plot_surv_area.r | 6 R/plot_surv_at_t.r | 9 R/plot_surv_lines.r | 5 R/plot_surv_quantiles.r | 8 R/plot_surv_rmst.r | 79 +++-- R/plot_surv_rmtl.r | 81 +++--- inst/doc/introduction.html | 2 man/plot_surv_3Dsurface.Rd | 10 man/plot_surv_quantiles.Rd | 2 man/plot_surv_rmst.Rd | 19 + man/plot_surv_rmtl.Rd | 24 + tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/plot_surv_area/plot-discrete-bins.svg | 16 - tests/testthat/_snaps/plot_surv_area/plot-discrete-round.svg | 16 - tests/testthat/_snaps/plot_surv_area/plot-lots-of-stuff.svg | 118 ++++---- tests/testthat/_snaps/plot_surv_area/plot-sep-lines.svg | 40 +-- tests/testthat/_snaps/plot_surv_area/plot-with-kaplan-meier.svg | 40 +-- tests/testthat/_snaps/plot_surv_at_t/plot-lots-of-stuff.svg | 32 +- tests/testthat/_snaps/plot_surv_at_t/plot-with-ci-multiple-t.svg | 4 tests/testthat/_snaps/plot_surv_contour/plot-at-t.svg | 16 - tests/testthat/_snaps/plot_surv_contour/plot-change-horizon.svg | 20 - tests/testthat/_snaps/plot_surv_contour/plot-cif.svg | 20 - tests/testthat/_snaps/plot_surv_contour/plot-custom-colors.svg | 10 tests/testthat/_snaps/plot_surv_contour/plot-defaults.svg | 20 - tests/testthat/_snaps/plot_surv_contour/plot-lots-of-stuff.svg | 56 ++-- tests/testthat/_snaps/plot_surv_contour/plot-panel-border-axis-dist.svg | 20 - tests/testthat/_snaps/plot_surv_contour/plot-with-group.svg | 20 - tests/testthat/_snaps/plot_surv_heatmap/plot-lots-of-stuff.svg | 36 +- tests/testthat/_snaps/plot_surv_lines/plot-kaplan-meier.svg | 6 tests/testthat/_snaps/plot_surv_lines/plot-lots-of-stuff.svg | 36 +- tests/testthat/_snaps/plot_surv_quantiles/plot-lots-of-stuff.svg | 36 +- tests/testthat/_snaps/plot_surv_rmst/plot-lots-of-stuff.svg | 24 - tests/testthat/_snaps/plot_surv_rmst/plot-multiple-tau-ci.svg |only tests/testthat/_snaps/plot_surv_rmst/plot-multiple-tau.svg |only tests/testthat/_snaps/plot_surv_rmst/plot-with-ci-group.svg |only tests/testthat/_snaps/plot_surv_rmst/plot-with-ci.svg |only tests/testthat/_snaps/plot_surv_rmtl/plot-lots-of-stuff.svg | 36 +- tests/testthat/_snaps/plot_surv_rmtl/plot-multiple-tau-ci.svg |only tests/testthat/_snaps/plot_surv_rmtl/plot-multiple-tau.svg |only tests/testthat/_snaps/plot_surv_rmtl/plot-with-ci.svg |only tests/testthat/_snaps/plot_surv_rmtl/plot-with-group-ci.svg |only tests/testthat/test_plot_surv_3Dsurface.r | 8 tests/testthat/test_plot_surv_lines.r | 2 tests/testthat/test_plot_surv_rmst.r | 33 ++ tests/testthat/test_plot_surv_rmtl.r | 33 ++ 50 files changed, 720 insertions(+), 473 deletions(-)
Title: Continuous Optimization using Memetic Algorithms with Local
Search Chains (MA-LS-Chains)
Description: An implementation of an algorithm family for continuous
optimization called memetic algorithms with local search chains
(MA-LS-Chains), as proposed in Molina et al. (2010) <doi:10.1162/evco.2010.18.1.18102> and Molina et al. (2011) <doi:10.1007/s00500-010-0647-2>. Rmalschains is further discussed in Bergmeir et al. (2016) <doi:10.18637/jss.v075.i04>. Memetic algorithms are hybridizations of genetic
algorithms with local search methods. They are especially suited
for continuous optimization.
Author: Christoph Bergmeir [aut, cre, cph],
Jose M. Benitez [ths],
Daniel Molina [aut, cph],
Robert Davies [ctb, cph] ,
Dirk Eddelbuettel [ctb, cph] ,
Nikolaus Hansen [ctb, cph] ,
Richard J. Wagner [ctb, cph]
Maintainer: Christoph Bergmeir <c.bergmeir@decsai.ugr.es>
Diff between Rmalschains versions 0.2-10 dated 2023-05-24 and 0.2-11 dated 2026-01-29
ChangeLog | 5 +++++ DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- src/Makevars | 3 ++- src/Makevars.win | 2 +- src/simplex.cc | 7 ++++--- 6 files changed, 21 insertions(+), 14 deletions(-)
Title: Explore Phylogenetic Signals Using Distance-Based Methods
Description: A unified method, called M statistic, is provided for detecting phylogenetic signals in continuous traits, discrete traits, and multi-trait combinations. Blomberg and Garland (2002) <doi:10.1046/j.1420-9101.2002.00472.x> provided a widely accepted statistical definition of the phylogenetic signal, which is the "tendency for related species to resemble each other more than they resemble species drawn at random from the tree". The M statistic strictly adheres to the definition of phylogenetic signal, formulating an index and developing a method of testing in strict accordance with the definition, instead of relying on correlation analysis or evolutionary models. The novel method equivalently expressed the textual definition of the phylogenetic signal as an inequality equation of the phylogenetic and trait distances and constructed the M statistic. The M statistic implemented in this package is based on the methodology described in Yao and Yuan (2025) <doi:10.1002/ece3.71106>. [...truncated...]
Author: Liang Yao [aut, cre],
Ye Yuan [aut]
Maintainer: Liang Yao <yaoliang986@ahnu.edu.cn>
Diff between phylosignalDB versions 0.2.2 dated 2025-01-16 and 0.4.2 dated 2026-01-29
DESCRIPTION | 18 +++++++++--------- MD5 | 19 ++++++++++--------- NEWS.md | 9 +++++++++ R/M_statistic.R | 23 ++++++++++++++++------- README.md | 4 +++- build/partial.rdb |binary inst |only man/M_rand_perm.Rd | 3 +++ man/M_stat.Rd | 3 +++ man/phylosignalDB-package.Rd | 6 +++--- man/phylosignal_M.Rd | 3 +++ 11 files changed, 59 insertions(+), 29 deletions(-)
Title: Optimal Binning and Weight of Evidence Framework for Modeling
Description: High-performance implementation of 36 optimal binning algorithms
(16 categorical, 20 numerical) for Weight of Evidence ('WoE') transformation,
credit scoring, and risk modeling. Includes advanced methods such as Mixed
Integer Linear Programming ('MILP'), Genetic Algorithms, Simulated Annealing,
and Monotonic Regression. Features automatic method selection based on
Information Value ('IV') maximization, strict monotonicity enforcement, and
efficient handling of large datasets via 'Rcpp'. Fully integrated with the
'tidymodels' ecosystem for building robust machine learning pipelines.
Based on methods described in Siddiqi (2006) <doi:10.1002/9781119201731>
and Navas-Palencia (2020) <doi:10.48550/arXiv.2001.08025>.
Author: Jose Evandeilton Lopes [aut, cre, cph]
Maintainer: Jose Evandeilton Lopes <evandeilton@gmail.com>
Diff between OptimalBinningWoE versions 1.0.3 dated 2026-01-23 and 1.0.8 dated 2026-01-29
DESCRIPTION | 8 MD5 | 41 NEWS.md | 219 + R/obwoe.R | 4696 +++++++++++++++++----------------- R/step_obwoe.R | 3596 +++++++++++++------------- README.md | 1198 ++++++-- inst/doc/introduction.R | 122 inst/doc/introduction.Rmd | 1456 +++++----- inst/doc/introduction.html | 222 - src/Makevars | 39 src/Makevars.win | 39 src/OBC_GMB_v5.cpp | 2 src/OBC_IVB_v5.cpp | 719 ++--- src/OBC_JEDI_v5.cpp | 603 ++-- src/OBC_MBA_v5.cpp | 651 ++-- src/OBC_Sketch_v5.cpp | 895 ++---- src/OBN_CM_v5.cpp | 1070 ++++--- src/OBN_MOB_v5.cpp | 8 src/OBN_UBSD_v5.cpp | 6 src/common/cutpoints_validator.h |only tests/testthat/test-categorical-all.R | 26 vignettes/introduction.Rmd | 1456 +++++----- 22 files changed, 8919 insertions(+), 8153 deletions(-)
More information about OptimalBinningWoE at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-23 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-01-15 0.1.15
2025-04-27 0.1.12
2025-04-19 0.1.11
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-02-20 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-21 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-12 1.0.1
2020-09-02 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-29 2025.7.29
2023-03-24 2023.3.8
2021-05-13 2021.5.4
2020-03-08 2020.3.4
2019-09-18 2019.9.18
2019-09-11 2019.9.11
2019-07-11 2019.7.9
2017-03-02 2017.03
2015-06-08 2015.5
2013-07-31 2013.8
2012-08-03 0.7.9
2011-10-08 0.7.8
2011-09-23 0.7.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-27 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-19 0.3.0
2021-01-22 0.2.0
2020-08-11 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-07 1.2.5
2022-03-25 1.2.4
2022-03-09 1.2.3
2021-10-19 1.2.2
2021-02-28 1.2.1
2020-12-16 1.2.0
2018-11-15 1.1.0
2018-01-17 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-02 0.2.0
2022-11-01 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-02 9.7
2024-02-03 9.4
2023-11-28 9.3
2023-09-02 9.1
2023-04-07 8.9
2023-01-26 8.6
2022-11-15 8.5
2022-02-07 8.4
2021-11-09 8.2
2020-03-02 8.0
2019-01-08 7.1
2019-01-06 7.0
2018-12-06 6.7
2018-08-02 6.1
2017-05-05 6.0
2017-04-18 5.9
2017-01-13 5.7
2016-05-07 5.3
2016-05-03 5.2
2015-10-22 5.0
2015-09-16 4.9
2015-08-18 4.7
2015-06-29 4.5
2015-06-10 4.2
2015-05-21 3.9
2015-05-16 3.7
2014-12-08 3.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-14 0.1.7
2020-08-10 0.1.6
Title: Parametric Statistical Modelling and Inference for the
'spatstat' Family
Description: Functionality for parametric statistical modelling and inference for spatial data,
mainly spatial point patterns, in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Supports parametric modelling, formal statistical inference, and model validation.
Parametric models include Poisson point processes, Cox point processes, Neyman-Scott cluster processes, Gibbs point processes and determinantal point processes. Models can be fitted to data using maximum likelihood, maximum pseudolikelihood, maximum composite likelihood and the method of minimum contrast. Fitted models can be simulated and predicted. Formal inference includes hypothesis tests (quadrat counting tests, Cressie-Read tests, Clark-Evans test, Berman test, Diggle-Cressie-Loosmore-Ford test, scan test, studentised permutation test, segregation test, ANOVA tests of fitted models, adjusted composite likelihood ratio test, envelope t [...truncated...]
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb],
Achmad Choiruddin [ctb, cph],
Jean-Francois Coeurjolly [ctb],
Ottmar Cronie [ctb],
Tilman Davies [ctb],
Julian Gilbey [ctb],
Yongtao [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.model versions 3.5-0 dated 2025-11-28 and 3.6-1 dated 2026-01-29
DESCRIPTION | 16 MD5 | 152 ++- NAMESPACE | 12 NEWS | 108 ++ R/Gcom.R | 6 R/Kcom.R | 6 R/aaaa.R | 2 R/as.tess.rppm.R |only R/augment.msr.R | 8 R/cdftest.R | 2 R/dppm.R | 4 R/eem.R | 2 R/effectfun.R | 108 ++ R/evidenceslrm.R | 2 R/fiksel.R | 6 R/kppm.R | 1655 +---------------------------------------- R/kppmCLadap.R |only R/kppmComLik.R |only R/kppmMinCon.R |only R/kppmPalmLik.R |only R/kppmWaagLik.R |only R/leverage.R | 24 R/lurking.R | 99 +- R/lurkmppm.R | 15 R/makepspace.R | 5 R/measures.R | 16 R/mincontrast.R | 19 R/mpl.R | 75 + R/objsurf.R | 8 R/penttinen.R | 56 + R/poissonfitsbetter.R | 3 R/predict.ppm.R | 100 +- R/profilepl.R | 201 +++- R/psst.R | 6 R/psstA.R | 6 R/psstG.R | 6 R/qqplotppm.R | 2 R/resid4plot.R | 29 R/rhohat.R | 2 R/rppm.R | 11 R/simulatekppm.R | 2 R/strauss.R | 8 R/strausshard.R | 7 R/summary.dppm.R | 11 R/summary.kppm.R | 22 R/summary.mppm.R | 2 R/summary.ppm.R | 8 R/triplets.R | 10 R/update.ppm.R | 50 - inst/doc/packagesizes.txt | 2 inst/info/packagesizes.txt | 2 man/Gcom.Rd | 6 man/Kcom.Rd | 6 man/as.fv.kppm.Rd | 23 man/as.tess.rppm.Rd |only man/clusterstrength.Rd |only man/dppm.Rd | 33 man/effectfun.Rd | 8 man/kppm.Rd | 165 ++-- man/logLik.kppm.Rd | 14 man/lurking.Rd | 64 - man/macros/defns.Rd | 2 man/panysib.Rd | 25 man/persist.Rd |only man/profilepl.Rd | 71 + man/psib.Rd | 5 man/psst.Rd | 6 man/psstA.Rd | 6 man/psstG.Rd | 6 man/repul.Rd | 3 man/rppm.Rd | 33 man/spatstat.model-internal.Rd | 14 man/spatstat.model-package.Rd | 2 src/Epent.c |only src/init.c | 1 src/proto.h | 1 tests/testsD.R | 28 tests/testsEtoF.R | 80 + tests/testsK.R | 32 tests/testsP2.R | 22 tests/testsS.R | 48 + tests/testsUtoZ.R | 17 82 files changed, 1465 insertions(+), 2152 deletions(-)
More information about spatstat.model at CRAN
Permanent link
Title: Data Exchange Between R and 'LabKey' Server
Description: The 'LabKey' client library for R makes it easy for R users to
load live data from a 'LabKey' Server, <https://www.labkey.com/>,
into the R environment for analysis, provided users have permissions
to read the data. It also enables R users to insert, update, and
delete records stored on a 'LabKey' Server, provided they have appropriate
permissions to do so.
Author: Peter Hussey [aut],
Cory Nathe [cre]
Maintainer: Cory Nathe <cnathe@labkey.com>
Diff between Rlabkey versions 3.4.4 dated 2025-09-18 and 3.4.5 dated 2026-01-29
DESCRIPTION | 8 - MD5 | 54 ++++----- NEWS | 5 R/labkey.defaults.R | 29 +++++ R/labkey.deleteRows.R | 11 -- R/labkey.domain.R | 28 +---- R/labkey.executeSql.R | 5 R/labkey.experiment.R | 15 -- R/labkey.getFolders.R | 30 +++-- R/labkey.getQueryInfo.R | 16 -- R/labkey.getQueryLists.R | 18 +-- R/labkey.getSchemas.R | 6 - R/labkey.importRows.R | 5 R/labkey.insertRows.R | 5 R/labkey.moduleProperty.R | 10 - R/labkey.moveRows.R | 5 R/labkey.pipeline.R | 20 --- R/labkey.provenance.R | 15 -- R/labkey.query.import.R | 5 R/labkey.rstudio.R | 15 -- R/labkey.saveBatch.R | 7 - R/labkey.security.R | 27 +--- R/labkey.selectRows.R | 164 +++++++++++++++++------------ R/labkey.storage.R | 15 -- R/labkey.updateRows.R | 6 - R/makeFilter.R | 252 ++++++++++++++++++++++++---------------------- man/Rlabkey-package.Rd | 4 man/makeFilter.Rd | 11 +- 28 files changed, 382 insertions(+), 409 deletions(-)
Title: Utilities for Working with Google APIs
Description: Provides utilities for working with Google APIs
<https://developers.google.com/apis-explorer>. This includes
functions and classes for handling common credential types and for
preparing, executing, and processing HTTP requests.
Author: Jennifer Bryan [aut, cre] ,
Craig Citro [aut],
Hadley Wickham [aut] ,
Google Inc [cph],
Posit Software, PBC [cph, fnd]
Maintainer: Jennifer Bryan <jenny@posit.co>
Diff between gargle versions 1.6.0 dated 2025-09-03 and 1.6.1 dated 2026-01-29
DESCRIPTION | 10 - MD5 | 105 +++++++------- NAMESPACE | 2 NEWS.md | 8 - R/AuthState-class.R | 4 R/aaa.R | 17 ++ R/credentials_app_default.R | 6 R/credentials_gce.R | 10 - R/request_retry.R | 4 R/response_process.R | 20 +- README.md | 6 build/vignette.rds |binary inst/discovery-doc-ingest/discover-discovery.R | 60 ++++---- inst/discovery-doc-ingest/drive-example.R | 6 inst/discovery-doc-ingest/ingest-functions.R | 14 - inst/doc/auth-from-web.R | 10 - inst/doc/auth-from-web.Rmd | 28 ++- inst/doc/auth-from-web.html | 16 -- inst/doc/gargle-auth-in-client-package.R | 26 +-- inst/doc/gargle-auth-in-client-package.Rmd | 39 +++-- inst/doc/get-api-credentials.R | 12 - inst/doc/get-api-credentials.Rmd | 16 +- inst/doc/get-api-credentials.html | 4 inst/doc/how-gargle-gets-tokens.R | 32 ++-- inst/doc/how-gargle-gets-tokens.Rmd | 54 ++++--- inst/doc/how-gargle-gets-tokens.html | 12 - inst/doc/non-interactive-auth.R | 6 inst/doc/non-interactive-auth.Rmd | 86 ++++++----- inst/doc/non-interactive-auth.html | 32 ++-- inst/doc/oauth-client-not-app.R | 10 - inst/doc/oauth-client-not-app.Rmd | 15 +- inst/doc/oauth-client-not-app.html | 4 inst/doc/request-helper-functions.R | 18 +- inst/doc/request-helper-functions.Rmd | 33 +++- inst/doc/request-helper-functions.html | 182 ++++++++++++------------- inst/doc/troubleshooting.R | 16 +- inst/doc/troubleshooting.Rmd | 39 +++-- inst/doc/troubleshooting.html | 21 +- man/AuthState-class.Rd | 4 man/credentials_app_default.Rd | 6 man/credentials_gce.Rd | 10 - man/gargle_last_response.Rd |only man/request_retry.Rd | 4 man/response_process.Rd | 14 + tests/testthat/test-aaa.R | 38 +++++ tests/testthat/test-response_process.R | 36 ++++ vignettes/auth-from-web.Rmd | 28 ++- vignettes/gargle-auth-in-client-package.Rmd | 39 +++-- vignettes/get-api-credentials.Rmd | 16 +- vignettes/how-gargle-gets-tokens.Rmd | 54 ++++--- vignettes/non-interactive-auth.Rmd | 86 ++++++----- vignettes/oauth-client-not-app.Rmd | 15 +- vignettes/request-helper-functions.Rmd | 33 +++- vignettes/troubleshooting.Rmd | 39 +++-- 54 files changed, 828 insertions(+), 577 deletions(-)
Title: Bitmap Tools
Description: Provides functions for creating, modifying, and displaying bitmaps including printing them in the terminal. There is a special emphasis on monochrome bitmap fonts and their glyphs as well as colored pixel art/sprites. Provides native read/write support for the 'hex' and 'yaff' bitmap font formats and if 'monobit' <https://github.com/robhagemans/monobit> is installed can also read/write several additional bitmap font formats.
Author: Trevor L. Davis [aut, cre] ,
Frederic Cambus [tyg] ,
Markus Kuhn [tyg] ,
josehzz [art]
Maintainer: Trevor L. Davis <trevor.l.davis@gmail.com>
Diff between bittermelon versions 2.1.1 dated 2025-01-16 and 2.2.1 dated 2026-01-29
DESCRIPTION | 16 MD5 | 187 ++++----- NAMESPACE | 8 NEWS.md | 15 R/Extract.bm_matrix.R | 27 - R/Ops.bm_object.R | 116 +++-- R/Summary.bm_list.R | 15 R/as.data.frame.bm_matrix.R | 64 +-- R/as.matrix.bm_matrix.R | 65 +-- R/as_bm_bitmap.R | 587 +++++++++++++++++------------ R/as_bm_list.R | 44 +- R/as_bm_pixmap.R | 187 ++++----- R/bind.R | 104 ++--- R/bm_bitmap.R | 2 R/bm_call.R | 9 R/bm_clamp.R | 107 ++--- R/bm_compose.R | 40 +- R/bm_compress.R | 201 +++++----- R/bm_distort.R | 107 ++--- R/bm_edit.R | 14 R/bm_expand.R | 110 ++--- R/bm_extend.R | 571 +++++++++++++++++----------- R/bm_extract.R |only R/bm_flip.R | 98 ++-- R/bm_font.R | 56 +- R/bm_gray.R | 27 - R/bm_invert.R | 35 - R/bm_list.R | 33 - R/bm_mask.R | 320 +++++++++------- R/bm_options.R | 46 +- R/bm_outline.R | 68 +-- R/bm_overlay.R | 245 +++++++----- R/bm_pad.R | 327 +++++++++++----- R/bm_padding_lengths.R | 64 +-- R/bm_pixel_picker.R | 175 ++++---- R/bm_pixmap.R | 2 R/bm_print.R | 32 - R/bm_replace.R | 73 +-- R/bm_resize.R | 157 ++++--- R/bm_rotate.R | 50 +- R/bm_shadow.R | 616 ++++++++++++++++++++----------- R/bm_shift.R | 142 ++++--- R/bm_trim.R | 270 ++++++++----- R/combine.R | 170 ++++---- R/farming_crops_16x16.R | 134 ++++-- R/hex.R | 250 ++++++------ R/lengths.R | 46 +- R/monobit.R | 59 +- R/plot.bm_matrix.R | 105 ++--- R/print.bm_bitmap.R | 229 ++++++----- R/print.bm_pixmap.R | 369 ++++++++++-------- R/sprites.R | 1 R/ucp.R | 46 +- R/utils-color.R | 102 ++--- R/utils-unicode.R | 12 R/yaff.R | 359 +++++++++--------- README.md | 162 ++++---- build/vignette.rds |binary inst/doc/bittermelon.html | 197 +++++---- man/bm_compress.Rd | 2 man/bm_distort.Rd | 2 man/bm_extract.Rd |only man/bm_mask.Rd | 2 man/bm_options.Rd | 2 man/bm_print.Rd | 6 man/is_supported_bitmap.Rd |only man/print.bm_pixmap.Rd | 2 tests/testthat/test-bm_bitmap.R | 144 +++---- tests/testthat/test-bm_clamp.R | 113 ++--- tests/testthat/test-bm_distort.R | 165 ++++---- tests/testthat/test-bm_expand.R | 57 +- tests/testthat/test-bm_extend.R | 323 +++++++++------- tests/testthat/test-bm_extract.R |only tests/testthat/test-bm_flip.R | 86 ++-- tests/testthat/test-bm_font.R | 17 tests/testthat/test-bm_gray.R | 42 +- tests/testthat/test-bm_invert.R | 41 +- tests/testthat/test-bm_list.R | 285 +++++++------- tests/testthat/test-bm_mask.R | 83 ++-- tests/testthat/test-bm_options.R | 7 tests/testthat/test-bm_outline.R | 52 +- tests/testthat/test-bm_overlay.R | 200 +++++----- tests/testthat/test-bm_pad.R | 107 ++--- tests/testthat/test-bm_pixmap.R | 134 +++--- tests/testthat/test-bm_replace.R | 49 +- tests/testthat/test-bm_shift.R | 47 +- tests/testthat/test-bm_trim.R | 345 ++++++++--------- tests/testthat/test-bm_widths.R | 40 +- tests/testthat/test-gridpattern.R | 33 - tests/testthat/test-hex.R | 75 +-- tests/testthat/test-monobit.R | 28 - tests/testthat/test-plot.R | 74 ++- tests/testthat/test-print.bm_bitmap.R | 116 +++-- tests/testthat/test-print.bm_pixmap.R | 358 ++++++++---------- tests/testthat/test-unicode.R | 26 - tests/testthat/test-yaff.R | 43 +- tests/testthat/txt/bm_extract_pixmap.txt |only 97 files changed, 6021 insertions(+), 4758 deletions(-)
Title: Create Interactive Chart with the JavaScript 'Billboard' Library
Description: Provides an 'htmlwidgets' interface to 'billboard.js',
a re-usable easy interface JavaScript chart library, based on D3 v4+.
Chart types include line charts, scatterplots, bar/lollipop charts, histogram/density plots, pie/donut charts and gauge charts.
All charts are interactive, and a proxy method is implemented to smoothly update a chart without rendering it again in 'shiny' apps.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut],
NAVER Corp [cph] ,
Mike Bostock [cph]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between billboarder versions 0.5.0 dated 2024-09-09 and 0.5.1 dated 2026-01-29
DESCRIPTION | 6 MD5 | 44 NEWS.md | 273 - R/billboarder-shiny.R | 2 R/billboarder.R | 184 build/vignette.rds |binary inst/doc/billboarder-intro.R | 184 inst/doc/billboarder-intro.html | 3969 ++++++++-------- inst/doc/billboarder-mapping.R | 120 inst/doc/billboarder-mapping.html | 3843 +++++++-------- inst/doc/billboarder-options.R | 330 - inst/doc/billboarder-options.html | 4103 ++++++++-------- inst/doc/billboarder.R | 761 +-- inst/doc/billboarder.Rmd | 1043 ++-- inst/doc/billboarder.html | 4590 +++++++++---------- inst/htmlwidgets/lib/billboard/billboard.min.css | 18 inst/htmlwidgets/lib/billboard/billboard.pkgd.min.js | 118 inst/htmlwidgets/lib/billboard/datalab.min.css | 18 inst/htmlwidgets/lib/billboard/graph.min.css | 18 inst/htmlwidgets/lib/billboard/insight.min.css | 18 inst/htmlwidgets/lib/billboard/modern.min.css | 18 man/bb_proxy_focus.Rd | 2 vignettes/billboarder.Rmd | 1043 ++-- 23 files changed, 10398 insertions(+), 10307 deletions(-)
Title: Computation of the WHO Child Growth Standards
Description: Provides WHO Child Growth Standards (z-scores) with
confidence intervals and standard errors around the
prevalence estimates, taking into account complex sample designs.
More information on the methods is
available online:
<https://www.who.int/tools/child-growth-standards>.
Author: Dirk Schumacher [aut],
Elaine Borghi [ctb, cre],
Jonathan Polonsky [ctb],
Giovanna Gatica Dominguez [ctb],
World Health Organization [cph]
Maintainer: Elaine Borghi <nfsdata@who.int>
Diff between anthro versions 1.0.1 dated 2023-09-17 and 1.1.0 dated 2026-01-29
DESCRIPTION | 30 - MD5 | 59 +- NAMESPACE | 19 NEWS.md | 28 R/assertions.R | 30 - R/prevalence-compute-api.R |only R/prevalence-hybrid-sw.R |only R/prevalence-simple.R |only R/prevalence-survey.R |only R/prevalence.R | 648 ++++++++++++---------- R/sysdata.rda |binary R/utils.R | 14 R/z-score-arm-circumference-for-age.R | 10 R/z-score-bmi-for-age.R | 14 R/z-score-head-circumference-for-age.R | 10 R/z-score-helper.R | 52 + R/z-score-length-for-age.R | 10 R/z-score-subscapular-skinfold-for-age.R | 10 R/z-score-triceps-skinfold-for-age.R | 10 R/z-score-weight-for-age.R | 22 R/z-score-weight-for-lenhei.R | 87 +- R/z-score.R | 65 +- README.md | 20 man/anthro-package.Rd | 13 man/anthro_prevalence.Rd | 17 man/anthro_zscores.Rd | 17 tests/testthat/test-age-groups.R | 8 tests/testthat/test-prevalence-simple-estimates.R |only tests/testthat/test-prevalence.R | 104 ++- tests/testthat/test-zscore-bmi-for-age.R | 76 +- tests/testthat/test-zscore-length-for-age.R | 6 tests/testthat/test-zscore-weight-for-age.R | 34 - tests/testthat/test-zscores.R | 103 ++- 33 files changed, 981 insertions(+), 535 deletions(-)
Title: Spot R Functions & Packages
Description: Helpers for parsing out the R functions
and packages used in R scripts and notebooks.
Author: Bryan Shalloway [aut, cre]
Maintainer: Bryan Shalloway <brshallodev@gmail.com>
Diff between funspotr versions 0.0.4 dated 2023-11-21 and 0.0.5 dated 2026-01-29
funspotr-0.0.4/funspotr/man/list_files_github_gists.Rd |only funspotr-0.0.5/funspotr/DESCRIPTION | 8 funspotr-0.0.5/funspotr/LICENSE | 4 funspotr-0.0.5/funspotr/MD5 | 53 - funspotr-0.0.5/funspotr/NAMESPACE | 1 funspotr-0.0.5/funspotr/NEWS.md | 5 funspotr-0.0.5/funspotr/R/copy-to-local-tempfile.R | 100 +- funspotr-0.0.5/funspotr/R/helpers.R | 108 +- funspotr-0.0.5/funspotr/R/list-files-gh-gists.R | 168 +--- funspotr-0.0.5/funspotr/R/list-files-gh-repo.R | 482 +++++------ funspotr-0.0.5/funspotr/R/list-files-wd.R | 86 +- funspotr-0.0.5/funspotr/R/network-plot.R | 204 ++-- funspotr-0.0.5/funspotr/R/spot-files.R | 232 ++--- funspotr-0.0.5/funspotr/R/spot-funs.R | 704 ++++++++--------- funspotr-0.0.5/funspotr/R/spot-pkgs.R | 556 ++++++------- funspotr-0.0.5/funspotr/R/spot-tags.R | 214 ++--- funspotr-0.0.5/funspotr/inst/ex-rmd-tags.Rmd | 14 funspotr-0.0.5/funspotr/inst/header.md | 10 funspotr-0.0.5/funspotr/man/check_pkgs_availability.Rd | 92 +- funspotr-0.0.5/funspotr/man/install_missing_pkgs.Rd | 94 +- funspotr-0.0.5/funspotr/man/list_files_github_repo.Rd | 4 funspotr-0.0.5/funspotr/man/list_files_wd.Rd | 4 funspotr-0.0.5/funspotr/man/network_plot.Rd | 2 funspotr-0.0.5/funspotr/man/spot_funs_files.Rd | 108 +- funspotr-0.0.5/funspotr/man/spot_pkgs_used.Rd | 64 - funspotr-0.0.5/funspotr/man/spot_tags.Rd | 162 +-- funspotr-0.0.5/funspotr/man/str_detect_r_docs.Rd | 66 - funspotr-0.0.5/funspotr/man/unnest_results.Rd | 2 28 files changed, 1762 insertions(+), 1785 deletions(-)