Sun, 01 Feb 2026

Package ontologySimilarity updated to version 2.9 with previous version 2.7 dated 2024-03-29

Title: Calculating Ontological Similarities
Description: Calculate similarity between ontological terms and sets of ontological terms based on term information content and assess statistical significance of similarity in the context of a collection of terms sets - Greene et al. 2017 <doi:10.1093/bioinformatics/btw763>.
Author: Daniel Greene [aut, cre]
Maintainer: Daniel Greene <dg333@cam.ac.uk>

Diff between ontologySimilarity versions 2.7 dated 2024-03-29 and 2.9 dated 2026-02-01

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Package bvhar updated to version 2.4.0 with previous version 2.3.0 dated 2025-06-25

Title: Bayesian Vector Heterogeneous Autoregressive Modeling
Description: Tools to model and forecast multivariate time series including Bayesian Vector heterogeneous autoregressive (VHAR) model by Kim & Baek (2023) (<doi:10.1080/00949655.2023.2281644>). 'bvhar' can model Vector Autoregressive (VAR), VHAR, Bayesian VAR (BVAR), and Bayesian VHAR (BVHAR) models.
Author: Young Geun Kim [aut, cre, cph] , Changryong Baek [ctb]
Maintainer: Young Geun Kim <ygeunkimstat@gmail.com>

Diff between bvhar versions 2.3.0 dated 2025-06-25 and 2.4.0 dated 2026-02-01

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Package BetterReg updated to version 0.3.0 with previous version 0.2.0 dated 2022-03-30

Title: Better Statistics for OLS and Binomial Logistic Regression
Description: Provides squared semi partial correlations, tolerance, Mahalanobis, Likelihood Ratio Chi Square, and Pseudo R Square. Aberson, C. L. (2022) <doi:10.31234/osf.io/s2yqn>.
Author: Chris Aberson [aut, cre]
Maintainer: Chris Aberson <chris.aberson@gmail.com>

Diff between BetterReg versions 0.2.0 dated 2022-03-30 and 0.3.0 dated 2026-02-01

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Package netShiny (with last version 1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2022-08-22 1.0

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New package SVG with initial version 1.0.0
Package: SVG
Title: Spatially Variable Genes Detection Methods for Spatial Transcriptomics
Version: 1.0.0
Description: A unified framework for detecting spatially variable genes (SVGs) in spatial transcriptomics data. This package integrates multiple state-of-the-art SVG detection methods including 'MERINGUE' (Moran's I based spatial autocorrelation), 'Giotto' binSpect (binary spatial enrichment test), 'SPARK-X' (non-parametric kernel-based test), and 'nnSVG' (nearest-neighbor Gaussian processes). Each method is implemented with optimized performance through vectorization, parallelization, and 'C++' acceleration where applicable. Methods are described in Miller et al. (2021) <doi:10.1101/gr.271288.120>, Dries et al. (2021) <doi:10.1186/s13059-021-02286-2>, Zhu et al. (2021) <doi:10.1186/s13059-021-02404-0>, and Weber et al. (2023) <doi:10.1038/s41467-023-39748-z>.
License: MIT + file LICENSE
URL: https://github.com/Zaoqu-Liu/SVG, https://zaoqu-liu.github.io/SVG/
BugReports: https://github.com/Zaoqu-Liu/SVG/issues
Encoding: UTF-8
LazyData: false
Depends: R (>= 4.0.0)
Imports: parallel, stats, utils, methods, MASS, Rcpp (>= 1.0.0)
Suggests: BRISC, geometry, RANN, CompQuadForm, BiocParallel, SpatialExperiment, SingleCellExperiment, SummarizedExperiment, spatstat.geom, spatstat.explore, testthat (>= 3.0.0), knitr, rmarkdown, covr
LinkingTo: Rcpp, RcppArmadillo
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2026-01-28 03:40:06 UTC; liuzaoqu
Author: Zaoqu Liu [aut, cre] , SVGbench Contributors [ctb]
Maintainer: Zaoqu Liu <liuzaoqu@163.com>
Repository: CRAN
Date/Publication: 2026-02-01 07:20:07 UTC

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Package maxEff updated to version 0.2.2 with previous version 0.2.1 dated 2026-01-24

Title: Additional Predictor with Maximum Effect Size
Description: Methods of selecting one from many numeric predictors for a regression model, to ensure that the additional predictor has the maximum effect size.
Author: Tingting Zhan [aut, cre]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>

Diff between maxEff versions 0.2.1 dated 2026-01-24 and 0.2.2 dated 2026-02-01

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Package groupedHyperframe.random updated to version 0.2.2 with previous version 0.2.1 dated 2026-01-24

Title: Simulated Grouped Hyper Data Frame
Description: An intuitive interface to simulate (1) superimposed (marked) point patterns with vectorized parameterization of random point pattern and distribution of marks; and (2) grouped hyper data frame based on population parameters and subject-specific random effects.
Author: Tingting Zhan [aut, cre]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>

Diff between groupedHyperframe.random versions 0.2.1 dated 2026-01-24 and 0.2.2 dated 2026-02-01

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Package groupedHyperframe updated to version 0.3.4 with previous version 0.3.3 dated 2026-01-21

Title: Grouped Hyper Data Frame
Description: An S3 class 'groupedHyperframe' that inherits from hyper data frame. Batch processes and aggregation of hyper column(s) over a nested grouping structure.
Author: Tingting Zhan [aut, cre]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>

Diff between groupedHyperframe versions 0.3.3 dated 2026-01-21 and 0.3.4 dated 2026-02-01

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New package date4ts with initial version 0.1.1
Package: date4ts
Title: Wrangle and Modify Ts Object with Classic Frequencies and Exact Dates
Version: 0.1.1
Description: The ts objects in R are managed using a very specific date format (in the form c(2022, 9) for September 2022 or c(2021, 2) for the second quarter of 2021, depending on the frequency, for example). We focus solely on monthly and quarterly series to manage the dates of ts objects. The general idea is to offer a set of functions to manage this date format without it being too restrictive or too imprecise depending on the rounding. This is a compromise between simplicity, precision and use of the basic 'stats' functions for creating and managing time series (ts(), window()). Les objets ts en R sont gérés par un format de date très particulier (sous la forme c(2022, 9) pour septembre 2022 ou c(2021, 2) pour le deuxième trimestre 2021 selon la fréquence par exemple). On se concentre uniquement sur les séries mensuelles et trimestrielles pour gérer les dates des objets ts. Lidée générale est de proposer un ensemble de fonctions pour gérer ce format de date sans que ce soit trop contraignant o [...truncated...]
License: GPL (>= 3)
URL: https://github.com/TractorTom/date4ts, https://tractortom.github.io/date4ts/
BugReports: https://github.com/TractorTom/date4ts/issues
Encoding: UTF-8
Imports: stats, checkmate
Depends: R (>= 4.1)
LazyData: true
Suggests: testthat (>= 3.0.0), renv, fuzzr, pkgdown, devtools, usethis, covr, withr, altdoc
NeedsCompilation: no
Packaged: 2026-01-28 15:08:24 UTC; onyxia
Author: Tanguy Barthelemy [aut, cre]
Maintainer: Tanguy Barthelemy <tangbarth@hotmail.fr>
Repository: CRAN
Date/Publication: 2026-02-01 08:00:02 UTC

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New package comphy with initial version 1.0.5
Package: comphy
Title: Functions Used in the Book "Computational Physics with R"
Version: 1.0.5
Description: Provides a collection of functions described and used in the book Foadi (2026, ISBN:9780750326308) "Computational Physics with R". These include routines for numerical differentiation, integration, differential equations, eigenvalue problems, Monte Carlo methods, and other algorithms relevant to computational physics.
License: GPL (>= 2)
Encoding: UTF-8
Depends: R (>= 3.6.0)
URL: https://github.com/jfoadi/comphy
BugReports: https://github.com/jfoadi/comphy/issues
NeedsCompilation: no
Packaged: 2026-01-28 15:32:26 UTC; james
Author: James Foadi [aut, cre]
Maintainer: James Foadi <james_foadi@yahoo.co.uk>
Repository: CRAN
Date/Publication: 2026-02-01 08:00:09 UTC

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New package blockstrap with initial version 1.0.0
Package: blockstrap
Title: Sample Dataframes by a Group
Version: 1.0.0
Description: Sample dataframes by group, in the form of a 'block bootstrap'. Entire groups are returned allowing for a single 'observation' to span multiple rows of the dataframe.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.1.0)
Suggests: HospitalNetwork, knitr, rmarkdown, testthat (>= 3.0.0)
Imports: dplyr, cli, rlang, vctrs
VignetteBuilder: knitr
URL: https://numbats.github.io/blockstrap/, https://github.com/numbats/blockstrap
BugReports: https://github.com/numbats/blockstrap/issues
NeedsCompilation: no
Packaged: 2026-01-28 03:08:13 UTC; mlyd0001
Author: Michael Lydeamore [aut, cre, cph] , Cash Looi [aut] , Kenyon Ng [aut] , Mitchell O'Hara-Wild [aut]
Maintainer: Michael Lydeamore <michael.lydeamore@monash.edu>
Repository: CRAN
Date/Publication: 2026-02-01 07:20:02 UTC

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New package adsasi with initial version 0.9.0.1
Package: adsasi
Title: Adaptive Sample Size Simulator
Version: 0.9.0.1
Description: A simulations-first sample size determination package that aims at making sample size formulae obsolete for most easily computable statistical experiments ; the main envisioned use case is clinical trials. The proposed clinical trial must be written by the user in the form of a function that takes as argument a sample size and returns a boolean (for whether or not the trial is a success). The 'adsasi' functions will then use it to find the correct sample size empirically. The unavoidable mis-specification is obviated by trying sample size values close to the right value, the latter being understood as the value that gives the probability of success the user wants (usually 80 or 90% in biostatistics, corresponding to 20 or 10% type II error).
License: GPL (>= 3)
Encoding: UTF-8
Depends: abind, grDevices, graphics, stats
NeedsCompilation: no
Packaged: 2026-01-28 11:31:41 UTC; Skerdi_HAVIARI
Author: Skerdi Haviari [aut, cre]
Maintainer: Skerdi Haviari <skerdi.haviari@aphp.fr>
Repository: CRAN
Date/Publication: 2026-02-01 07:50:11 UTC

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Package SparseTSCGM (with last version 4.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2026-01-09 4.1
2021-01-13 4.0
2020-05-24 3.0
2016-11-06 2.5
2015-07-16 2.2
2014-08-21 2.1.1
2014-01-31 2.0
2013-05-24 1.0

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Package TransGraph (with last version 1.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2025-11-12 1.1.0
2023-10-19 1.0.0
2023-10-19 1.0.1

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Package huge (with last version 1.3.5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-06-30 1.3.5
2020-04-01 1.3.4.1
2019-10-28 1.3.4
2019-09-09 1.3.3
2019-04-08 1.3.2
2019-03-11 1.3.1
2019-02-22 1.3.0
2015-09-16 1.2.7
2014-02-28 1.2.6
2013-12-07 1.2.5
2012-08-16 1.2.4

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Package nutriNetwork (with last version 0.2.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2025-11-09 0.2.0
2023-07-05 0.1.2
2019-04-26 0.1.1

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Package noisysbmGGM (with last version 0.1.2.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2024-03-07 0.1.2.3

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Package NetGreg (with last version 0.0.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2025-06-03 0.0.2

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Package jaccard (with last version 0.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-06-14 0.1.0

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Package HTGM2D (with last version 1.1) was removed from CRAN

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2025-05-18 1.1
2025-04-07 1.0

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Package rgm (with last version 1.0.4) was removed from CRAN

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2024-03-21 1.0.4
2024-03-12 1.0.3
2024-01-12 1.0.1

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Package netgwas (with last version 1.14.4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2025-11-10 1.14.4
2024-03-19 1.14.3
2023-08-07 1.14.2
2022-08-25 1.14.1
2022-08-17 1.14
2020-11-17 1.13
2020-10-21 1.12
2019-10-15 1.11
2019-04-12 1.10
2019-03-26 1.9
2019-02-16 1.8.1
2018-08-13 1.7.0
2018-05-16 1.5.0
2018-04-06 0.1.4.2
2018-03-13 0.1.3.2
2018-02-07 0.1.3.0
2018-02-07 0.1.3.1
2018-01-12 0.1.2.0
2017-12-01 0.0.1-1

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Package HTGM3D (with last version 1.0) was removed from CRAN

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2025-05-30 1.0

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Package HeteroGGM (with last version 1.0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2023-10-11 1.0.1
2021-02-11 0.1.0

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Package stminsights (with last version 0.4.3) was removed from CRAN

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2024-06-21 0.4.3

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Package spatstat updated to version 3.5-1 with previous version 3.5-0 dated 2025-12-01

Title: Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
Description: Comprehensive open-source toolbox for analysing Spatial Point Patterns. Focused mainly on two-dimensional point patterns, including multitype/marked points, in any spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, point patterns on a linear network, and patterns of other geometrical objects. Supports spatial covariate data such as pixel images. Contains over 3000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks. Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlatio [...truncated...]
Author: Adrian Baddeley [aut, cre] , Rolf Turner [aut] , Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>

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Package public.ctn0094data updated to version 1.1.0 with previous version 1.0.6 dated 2023-10-01

Title: De-Identified Data from CTN-0094
Description: These are harmonized datasets produced as part of the Clinical Trials Network (CTN) protocol number 0094. This is a US National Institute of Drug Abuse (NIDA) funded project; to learn more go to <https://ctnlibrary.org/protocol/ctn0094/>. These are datasets which have the data harmonized from CTN-0027 (<https://ctnlibrary.org/protocol/ctn0027/>), CTN-0030 (<https://ctnlibrary.org/protocol/ctn0030/>), and CTN-0051 (<https://ctnlibrary.org/protocol/ctn0051/>).
Author: Raymond Balise [aut, cre] , Gabriel Odom [aut] , Anna Calderon [aut] , Kyle Grealis [aut] , Michael Ackerman [aut]
Maintainer: Raymond Balise <balise@miami.edu>

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Package nanoarrow updated to version 0.7.0-3 with previous version 0.7.0-2 dated 2025-12-04

Title: Interface to the 'nanoarrow' 'C' Library
Description: Provides an 'R' interface to the 'nanoarrow' 'C' library and the 'Apache Arrow' application binary interface. Functions to import and export 'ArrowArray', 'ArrowSchema', and 'ArrowArrayStream' 'C' structures to and from 'R' objects are provided alongside helpers to facilitate zero-copy data transfer among 'R' bindings to libraries implementing the 'Arrow' 'C' data interface.
Author: Dewey Dunnington [aut, cre] , Apache Arrow [aut, cph], Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>

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Package caretForecast updated to version 0.1.3 with previous version 0.1.2 dated 2026-01-30

Title: Conformal Time Series Forecasting Using State of Art Machine Learning Algorithms
Description: Conformal time series forecasting using the caret infrastructure. It provides access to state-of-the-art machine learning models for forecasting applications. The hyperparameter of each model is selected based on time series cross-validation, and forecasting is done recursively.
Author: Resul Akay [aut, cre]
Maintainer: Resul Akay <resul.akay@taf-society.org>

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