Title: Calculating Ontological Similarities
Description: Calculate similarity between ontological terms and sets of ontological terms based on term information content and assess statistical significance of similarity in the context of a collection of terms sets - Greene et al. 2017 <doi:10.1093/bioinformatics/btw763>.
Author: Daniel Greene [aut, cre]
Maintainer: Daniel Greene <dg333@cam.ac.uk>
Diff between ontologySimilarity versions 2.7 dated 2024-03-29 and 2.9 dated 2026-02-01
DESCRIPTION | 13 MD5 | 26 - R/group-sim.R | 6 build/vignette.rds |binary data/GO_IC.RData |binary data/gene_GO_terms.RData |binary inst/doc/ontologySimilarity-GO-example.html | 233 ++++++++------- inst/doc/ontologySimilarity-examples.html | 390 +++++++++++++++----------- inst/doc/ontologySimilarity-introduction.html | 230 ++++++++------- man/group_term_enrichment.Rd | 5 src/Interface.cpp | 6 src/Sampling.cpp | 2 src/TermSetSimData.cpp | 2 src/TermSetSimData.h | 2 14 files changed, 526 insertions(+), 389 deletions(-)
More information about ontologySimilarity at CRAN
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Title: Bayesian Vector Heterogeneous Autoregressive Modeling
Description: Tools to model and forecast multivariate time series
including Bayesian Vector heterogeneous autoregressive (VHAR) model
by Kim & Baek (2023) (<doi:10.1080/00949655.2023.2281644>).
'bvhar' can model Vector Autoregressive (VAR), VHAR, Bayesian VAR (BVAR), and Bayesian VHAR (BVHAR) models.
Author: Young Geun Kim [aut, cre, cph] ,
Changryong Baek [ctb]
Maintainer: Young Geun Kim <ygeunkimstat@gmail.com>
Diff between bvhar versions 2.3.0 dated 2025-06-25 and 2.4.0 dated 2026-02-01
bvhar-2.3.0/bvhar/inst/doc/forecasting.R |only bvhar-2.3.0/bvhar/inst/doc/forecasting.Rmd |only bvhar-2.3.0/bvhar/inst/doc/forecasting.html |only bvhar-2.3.0/bvhar/inst/include/bvhar/deprecated_triangular |only bvhar-2.3.0/bvhar/inst/include/bvhar/src/bayes/misc/deprecated |only bvhar-2.3.0/bvhar/inst/include/bvhar/src/bayes/triangular/deprecated |only bvhar-2.3.0/bvhar/vignettes/forecasting.Rmd |only bvhar-2.4.0/bvhar/DESCRIPTION | 15 bvhar-2.4.0/bvhar/LICENSE |only bvhar-2.4.0/bvhar/MD5 | 210 +- bvhar-2.4.0/bvhar/NAMESPACE | 1 bvhar-2.4.0/bvhar/NEWS.md | 51 bvhar-2.4.0/bvhar/R/RcppExports.R | 233 -- bvhar-2.4.0/bvhar/R/bvar-minnesota.R | 121 - bvhar-2.4.0/bvhar/R/bvhar-minnesota.R | 192 + bvhar-2.4.0/bvhar/R/forecast.R | 117 + bvhar-2.4.0/bvhar/R/generate-process.R | 28 bvhar-2.4.0/bvhar/R/hyperparam.R | 20 bvhar-2.4.0/bvhar/R/misc-r.R | 116 - bvhar-2.4.0/bvhar/R/summary-forecast.R | 256 ++ bvhar-2.4.0/bvhar/R/tuning.R | 21 bvhar-2.4.0/bvhar/R/var-bayes.R | 198 +- bvhar-2.4.0/bvhar/R/vhar-bayes.R | 196 + bvhar-2.4.0/bvhar/R/zzz.R | 2 bvhar-2.4.0/bvhar/README.md | 173 - bvhar-2.4.0/bvhar/build/partial.rdb |binary bvhar-2.4.0/bvhar/build/vignette.rds |binary bvhar-2.4.0/bvhar/inst/doc/bvhar.html | 136 - bvhar-2.4.0/bvhar/inst/doc/minnesota.html | 142 - bvhar-2.4.0/bvhar/inst/doc/shrinkage.html | 148 - bvhar-2.4.0/bvhar/inst/doc/stochastic-volatility.html | 129 - bvhar-2.4.0/bvhar/inst/include/bvhar/forecast | 2 bvhar-2.4.0/bvhar/inst/include/bvhar/ols | 1 bvhar-2.4.0/bvhar/inst/include/bvhar/spillover | 2 bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/bayes.h | 71 bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/dfm |only bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/forecaster.h | 171 + bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/misc/coef_helper.h | 6 bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/misc/dl_helper.h | 18 bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/misc/draw.h | 3 bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/misc/factor_helper.h |only bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/misc/gdp_helper.h | 12 bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/misc/helper.h | 2 bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/misc/hs_helper.h | 14 bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/misc/minn_helper.h | 8 bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/misc/ng_helper.h | 16 bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/misc/ssvs_helper.h | 12 bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/misc/sv_helper.h | 8 bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/mniw/config.h |only bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/mniw/forecaster.h | 12 bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/mniw/minnesota.h | 358 +-- bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/mniw/spillover.h | 6 bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/mniw/tuning.h |only bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/shrinkage/config.h | 138 - bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/shrinkage/shrinkage.h | 56 bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/triangular/config.h | 296 +-- bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/triangular/forecaster.h | 986 ++++++---- bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/triangular/regforecaster.h | 2 bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/triangular/regspillover.h | 4 bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/triangular/spillover.h | 112 - bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/triangular/svforecaster.h | 2 bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/triangular/svspillover.h | 4 bvhar-2.4.0/bvhar/inst/include/bvhar/src/bayes/triangular/triangular.h | 243 +- bvhar-2.4.0/bvhar/inst/include/bvhar/src/core/common.h | 52 bvhar-2.4.0/bvhar/inst/include/bvhar/src/core/commondefs.h | 100 - bvhar-2.4.0/bvhar/inst/include/bvhar/src/core/eigen.h | 4 bvhar-2.4.0/bvhar/inst/include/bvhar/src/core/forecaster.h | 51 bvhar-2.4.0/bvhar/inst/include/bvhar/src/core/interrupt.h | 2 bvhar-2.4.0/bvhar/inst/include/bvhar/src/core/lbfgspp.h |only bvhar-2.4.0/bvhar/inst/include/bvhar/src/core/progress.h | 228 +- bvhar-2.4.0/bvhar/inst/include/bvhar/src/core/spdlog.h | 31 bvhar-2.4.0/bvhar/inst/include/bvhar/src/math/design.h | 2 bvhar-2.4.0/bvhar/inst/include/bvhar/src/math/optim.h |only bvhar-2.4.0/bvhar/inst/include/bvhar/src/math/random.h | 255 +- bvhar-2.4.0/bvhar/inst/include/bvhar/src/math/structural.h | 14 bvhar-2.4.0/bvhar/inst/include/bvhar/src/ols/forecaster.h | 154 + bvhar-2.4.0/bvhar/inst/include/bvhar/src/ols/ols.h | 34 bvhar-2.4.0/bvhar/inst/include/bvhar/src/ols/simulator.h |only bvhar-2.4.0/bvhar/inst/include/bvhar/src/ols/spillover.h | 42 bvhar-2.4.0/bvhar/inst/include/bvhar/utils | 1 bvhar-2.4.0/bvhar/man/bound_bvhar.Rd | 2 bvhar-2.4.0/bvhar/man/bvar_minnesota.Rd | 9 bvhar-2.4.0/bvhar/man/bvhar-package.Rd | 2 bvhar-2.4.0/bvhar/man/bvhar_minnesota.Rd | 9 bvhar-2.4.0/bvhar/man/choose_bayes.Rd | 2 bvhar-2.4.0/bvhar/man/choose_bvar.Rd | 2 bvhar-2.4.0/bvhar/man/figures/logo.png |binary bvhar-2.4.0/bvhar/man/forecast_expand.Rd | 5 bvhar-2.4.0/bvhar/man/forecast_roll.Rd | 5 bvhar-2.4.0/bvhar/man/set_factor.Rd |only bvhar-2.4.0/bvhar/man/var_bayes.Rd | 8 bvhar-2.4.0/bvhar/man/vhar_bayes.Rd | 6 bvhar-2.4.0/bvhar/src/Makevars | 4 bvhar-2.4.0/bvhar/src/Makevars.ucrt | 2 bvhar-2.4.0/bvhar/src/Makevars.win | 4 bvhar-2.4.0/bvhar/src/RcppExports.cpp | 477 ++-- bvhar-2.4.0/bvhar/src/mniw.cpp | 287 +- bvhar-2.4.0/bvhar/src/ols.cpp | 116 - bvhar-2.4.0/bvhar/src/triangular.cpp | 982 +++++++-- bvhar-2.4.0/bvhar/src/utils.cpp | 356 --- bvhar-2.4.0/bvhar/tests/testthat/test-bvar-minnesota.R | 10 bvhar-2.4.0/bvhar/tests/testthat/test-bvhar-minnesota.R | 20 bvhar-2.4.0/bvhar/tests/testthat/test-criteria.R | 18 bvhar-2.4.0/bvhar/tests/testthat/test-forecast.R | 94 bvhar-2.4.0/bvhar/tests/testthat/test-generate-process.R | 108 + bvhar-2.4.0/bvhar/tests/testthat/test-summary-forecast.R | 32 bvhar-2.4.0/bvhar/tests/testthat/test-var-bayes.R | 40 bvhar-2.4.0/bvhar/tests/testthat/test-vhar-bayes.R | 30 bvhar-2.4.0/bvhar/vignettes/forecasting.R |only bvhar-2.4.0/bvhar/vignettes/forecasting.html |only 110 files changed, 5414 insertions(+), 3256 deletions(-)
Title: Better Statistics for OLS and Binomial Logistic Regression
Description: Provides squared semi partial correlations, tolerance, Mahalanobis, Likelihood Ratio Chi Square, and Pseudo R Square. Aberson, C. L. (2022) <doi:10.31234/osf.io/s2yqn>.
Author: Chris Aberson [aut, cre]
Maintainer: Chris Aberson <chris.aberson@gmail.com>
Diff between BetterReg versions 0.2.0 dated 2022-03-30 and 0.3.0 dated 2026-02-01
DESCRIPTION | 16 - MD5 | 18 - R/data.R | 38 +++ R/depbcomp.R | 61 ++-- R/indbcomp.R | 655 ++++++++++++++++++++++++++--------------------------- README.md | 82 ++++++ data/sample1.RData |only data/sample2.RData |only man/depbcomp.Rd | 2 man/indbcomp.Rd | 9 man/sample1.Rd |only man/sample2.Rd |only 12 files changed, 494 insertions(+), 387 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-22 1.0
Title: Additional Predictor with Maximum Effect Size
Description: Methods of selecting one from many numeric predictors
for a regression model, to ensure that the additional
predictor has the maximum effect size.
Author: Tingting Zhan [aut, cre]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between maxEff versions 0.2.1 dated 2026-01-24 and 0.2.2 dated 2026-02-01
DESCRIPTION | 17 +++++++---------- MD5 | 6 +++--- inst/doc/intro.html | 12 ++++++------ man/maxEff-package.Rd | 6 +----- 4 files changed, 17 insertions(+), 24 deletions(-)
Title: Simulated Grouped Hyper Data Frame
Description: An intuitive interface to simulate (1) superimposed (marked) point patterns with vectorized parameterization of random point pattern and distribution of marks; and (2) grouped hyper data frame based on population parameters and subject-specific random effects.
Author: Tingting Zhan [aut, cre]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between groupedHyperframe.random versions 0.2.1 dated 2026-01-24 and 0.2.2 dated 2026-02-01
DESCRIPTION | 17 +++++++---------- MD5 | 6 +++--- inst/doc/intro.html | 12 ++++++------ man/groupedHyperframe.random-package.Rd | 6 +----- 4 files changed, 17 insertions(+), 24 deletions(-)
More information about groupedHyperframe.random at CRAN
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Title: Grouped Hyper Data Frame
Description: An S3 class 'groupedHyperframe' that inherits from hyper data frame. Batch processes and aggregation of hyper column(s) over a nested grouping structure.
Author: Tingting Zhan [aut, cre]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between groupedHyperframe versions 0.3.3 dated 2026-01-21 and 0.3.4 dated 2026-02-01
DESCRIPTION | 17 +--- MD5 | 26 ++++--- NAMESPACE | 14 +++ R/interpolation.fv.R | 54 ++++++++++++++- R/kerndens.R | 5 + R/ksmooth.fv.R |only R/quantile.R | 5 + R/smooth.spline.fv.R |only R/vectorlist.R | 4 + R/vtrapz.R | 139 ++++++++++++++++++++++++++++++++++++--- inst/doc/intro.html | 12 +-- man/groupedHyperframe-package.Rd | 5 - man/interpolation_fv.Rd | 14 +++ man/ksmooth.fv.Rd |only man/smooth.spline.fv.Rd |only man/visualize_vtrapz.Rd | 14 +++ 16 files changed, 258 insertions(+), 51 deletions(-)
More information about groupedHyperframe at CRAN
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-01-09 4.1
2021-01-13 4.0
2020-05-24 3.0
2016-11-06 2.5
2015-07-16 2.2
2014-08-21 2.1.1
2014-01-31 2.0
2013-05-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-11-12 1.1.0
2023-10-19 1.0.0
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-30 1.3.5
2020-04-01 1.3.4.1
2019-10-28 1.3.4
2019-09-09 1.3.3
2019-04-08 1.3.2
2019-03-11 1.3.1
2019-02-22 1.3.0
2015-09-16 1.2.7
2014-02-28 1.2.6
2013-12-07 1.2.5
2012-08-16 1.2.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-11-09 0.2.0
2023-07-05 0.1.2
2019-04-26 0.1.1
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2024-03-07 0.1.2.3
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2025-06-03 0.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-14 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-05-18 1.1
2025-04-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
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2022-08-25 1.14.1
2022-08-17 1.14
2020-11-17 1.13
2020-10-21 1.12
2019-10-15 1.11
2019-04-12 1.10
2019-03-26 1.9
2019-02-16 1.8.1
2018-08-13 1.7.0
2018-05-16 1.5.0
2018-04-06 0.1.4.2
2018-03-13 0.1.3.2
2018-02-07 0.1.3.0
2018-02-07 0.1.3.1
2018-01-12 0.1.2.0
2017-12-01 0.0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-06-21 0.4.3
Title: Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
Description: Comprehensive open-source toolbox for analysing Spatial Point Patterns. Focused mainly on two-dimensional point patterns, including multitype/marked points, in any spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, point patterns on a linear network, and patterns of other geometrical objects. Supports spatial covariate data such as pixel images.
Contains over 3000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference.
Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks.
Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlatio [...truncated...]
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat versions 3.5-0 dated 2025-12-01 and 3.5-1 dated 2026-02-01
DESCRIPTION | 16 +- MD5 | 42 +++---- NEWS | 9 + demo/spatstat.R | 8 - inst/doc/NAobjects.pdf |binary inst/doc/bugfixes.pdf |binary inst/doc/datasets.R | 152 +++++++++++++------------- inst/doc/datasets.Rnw | 42 ++++--- inst/doc/datasets.pdf |binary inst/doc/fv.pdf |binary inst/doc/getstart.pdf |binary inst/doc/packagesizes.txt | 1 inst/doc/replicated.pdf |binary inst/doc/shapefiles.pdf |binary inst/doc/updates.R | 25 +++- inst/doc/updates.Rnw | 254 +++++++++++++++++++++++++++++++++++++++++---- inst/doc/updates.pdf |binary inst/info/packagesizes.txt | 1 man/macros/defns.Rd | 2 man/spatstat-package.Rd | 240 ++++++++++++++++++++++++++++++++++++------ vignettes/datasets.Rnw | 42 ++++--- vignettes/updates.Rnw | 254 +++++++++++++++++++++++++++++++++++++++++---- 22 files changed, 856 insertions(+), 232 deletions(-)
Title: De-Identified Data from CTN-0094
Description: These are harmonized datasets produced as part of the Clinical
Trials Network (CTN) protocol number 0094. This is a US National Institute
of Drug Abuse (NIDA) funded project; to learn more go to
<https://ctnlibrary.org/protocol/ctn0094/>. These are datasets which have
the data harmonized from CTN-0027 (<https://ctnlibrary.org/protocol/ctn0027/>),
CTN-0030 (<https://ctnlibrary.org/protocol/ctn0030/>), and CTN-0051
(<https://ctnlibrary.org/protocol/ctn0051/>).
Author: Raymond Balise [aut, cre] ,
Gabriel Odom [aut] ,
Anna Calderon [aut] ,
Kyle Grealis [aut] ,
Michael Ackerman [aut]
Maintainer: Raymond Balise <balise@miami.edu>
Diff between public.ctn0094data versions 1.0.6 dated 2023-10-01 and 1.1.0 dated 2026-02-01
DESCRIPTION | 33 +++-- MD5 | 74 +++++------ NEWS.md | 18 ++ R/psychiatric.R | 4 build/partial.rdb |only build/vignette.rds |binary data/all_drugs.rda |binary data/asi.rda |binary data/demographics.rda |binary data/detox.rda |binary data/everybody.rda |binary data/fagerstrom.rda |binary data/first_survey.rda |binary data/meta_study_length.rda |binary data/meta_substance_groups_uds.rda |binary data/pain.rda |binary data/psychiatric.rda |binary data/qol.rda |binary data/randomization.rda |binary data/rbs.rda |binary data/rbs_iv.rda |binary data/screening_date.rda |binary data/sex.rda |binary data/site_masked.rda |binary data/tlfb.rda |binary data/treatment.rda |binary data/uds.rda |binary data/uds_temp.rda |binary data/visit.rda |binary data/withdrawal.rda |binary data/withdrawal_pre_post.rda |binary inst/add_ctn_labels.R |only inst/doc/final.html | 235 +++++++++++-------------------------- inst/doc/harmonization.R | 2 inst/doc/harmonization.Rmd | 40 +++--- inst/doc/harmonization.html | 175 ++++++++++++++------------- man/psychiatric.Rd | 4 man/site_masked.Rd | 4 vignettes/harmonization.Rmd | 40 +++--- 39 files changed, 282 insertions(+), 347 deletions(-)
More information about public.ctn0094data at CRAN
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Title: Interface to the 'nanoarrow' 'C' Library
Description: Provides an 'R' interface to the 'nanoarrow' 'C' library and the
'Apache Arrow' application binary interface. Functions to import and
export 'ArrowArray', 'ArrowSchema', and 'ArrowArrayStream' 'C' structures
to and from 'R' objects are provided alongside helpers to facilitate zero-copy
data transfer among 'R' bindings to libraries implementing the 'Arrow' 'C'
data interface.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between nanoarrow versions 0.7.0-2 dated 2025-12-04 and 0.7.0-3 dated 2026-02-01
DESCRIPTION | 8 ++++---- MD5 | 15 ++++++++------- man/convert_array.Rd | 2 +- man/infer_nanoarrow_ptype.Rd | 2 +- man/na_vctrs.Rd | 2 +- src/altrep.h | 4 ++++ src/buffer.c | 2 +- src/flatcc/portable/flatcc_portable.h |only src/materialize.c | 5 +++++ 9 files changed, 25 insertions(+), 15 deletions(-)
Title: Conformal Time Series Forecasting Using State of Art Machine
Learning Algorithms
Description: Conformal time series forecasting using the caret infrastructure.
It provides access to state-of-the-art machine learning models for forecasting
applications. The hyperparameter of each model is selected based on time
series cross-validation, and forecasting is done recursively.
Author: Resul Akay [aut, cre]
Maintainer: Resul Akay <resul.akay@taf-society.org>
Diff between caretForecast versions 0.1.2 dated 2026-01-30 and 0.1.3 dated 2026-02-01
DESCRIPTION | 16 - MD5 | 29 +- NEWS.md | 22 + R/arml.R | 17 - R/utils.R | 10 README.md | 18 + man/figures/README-example6-2.png |binary man/figures/logo.png |only man/get_var_imp.Rd | 2 tests/testthat/test-ARml.R | 395 +++++++++++++++++++++++++++++++++++ tests/testthat/test-calibration.R |only tests/testthat/test-conformal_pred.R | 271 ++++++++++++++++++++++++ tests/testthat/test-forecast.ARml.R | 117 ++++++++++ tests/testthat/test-get_var_imp.R | 42 +++ tests/testthat/test-short_series.R | 47 ++++ tests/testthat/test-split_ts.R | 81 +++++++ tests/testthat/test-utils.R |only 17 files changed, 1018 insertions(+), 49 deletions(-)