Title: Calculate Metrics for Trauma System Performance
Description: Hospitals, hospital systems, and even trauma systems that
provide care to injured patients may not be aware of robust metrics
that can help gauge the efficacy of their programs in saving the lives
of injured patients. 'traumar' provides robust functions driven by
the academic literature to automate the calculation of relevant
metrics to individuals desiring to measure the performance of their
trauma center or even a trauma system. 'traumar' also provides some
helper functions for the data analysis journey. Users can refer to the
following publications for descriptions of the methods used in
'traumar'. TRISS methodology, including probability of survival, and
the W, M, and Z Scores - Flora (1978)
<doi:10.1097/00005373-197810000-00003>, Boyd et al. (1987,
PMID:3106646), Llullaku et al. (2009) <doi:10.1186/1749-7922-4-2>,
Singh et al. (2011) <doi:10.4103/0974-2700.86626>, Baker et al. (1974,
PMID:4814394), and Champion et al. (1989)
<doi:10.1097/00005373-198905000- [...truncated...]
Author: Nicolas Foss [aut, cre],
Iowa Department of Health and Human Services [cph]
Maintainer: Nicolas Foss <nicolas.foss@hhs.iowa.gov>
Diff between traumar versions 1.2.3 dated 2026-01-07 and 1.2.4 dated 2026-02-05
DESCRIPTION | 6 MD5 | 156 +++--- NAMESPACE | 1 NEWS.md | 431 +++++++++-------- R/globalVariables.R | 4 R/impute.r | 204 +++++--- R/is_it_normal.R | 224 ++++----- R/non_linear_bins.R | 225 +++++---- R/normalize.r | 40 - R/pretty_number.r | 251 ++++++---- R/pretty_percent.r | 41 + R/probability_of_survival.R | 99 +--- R/relative_mortality.R | 583 ++++++++++++------------ R/season.r | 44 + R/seqic_1.R | 347 +++++--------- R/seqic_10.R | 340 +++++-------- R/seqic_11.R | 310 +++++------- R/seqic_12.R | 263 ++++------ R/seqic_13.R | 240 ++++----- R/seqic_2.R | 224 +++------ R/seqic_3.R | 245 +++------- R/seqic_4.R | 332 +++++-------- R/seqic_5.R | 259 ++++------ R/seqic_6.R | 342 +++++--------- R/seqic_7.R | 242 +++------ R/seqic_8.R | 225 +++------ R/seqic_9.R | 422 ++++++----------- R/small_count_label.r | 54 -- R/stat_sig.r | 46 + R/theme_cleaner.R | 203 +++++--- R/trauma_case_mix.r | 188 ++++--- R/trauma_performance.r | 253 +++++----- R/traumar-package.R | 1 R/validate_character_factor.R |only R/validate_choice.R |only R/validate_class.R |only R/validate_complete.R |only R/validate_data_pull.R |only R/validate_data_structure.R |only R/validate_error_type.R |only R/validate_length.R |only R/validate_names.R |only R/validate_numeric.R |only R/validate_set.R |only README.md | 111 ++-- man/pretty_number.Rd | 23 man/season.Rd | 4 man/seqic_indicator_1.Rd | 10 man/seqic_indicator_10.Rd | 1 man/seqic_indicator_3.Rd | 3 man/validate_character_factor.Rd |only man/validate_choice.Rd |only man/validate_class.Rd |only man/validate_complete.Rd |only man/validate_data_pull.Rd |only man/validate_data_structure.Rd |only man/validate_error_type.Rd |only man/validate_length.Rd |only man/validate_names.Rd |only man/validate_numeric.Rd |only man/validate_set.Rd |only tests/testthat/test-impute.R | 34 + tests/testthat/test-is_it_normal.R | 2 tests/testthat/test-non_linear_bins.R | 16 tests/testthat/test-normalize.R | 9 tests/testthat/test-pretty_number.R | 56 +- tests/testthat/test-pretty_percent.R | 28 - tests/testthat/test-probability_of_survival.R | 9 tests/testthat/test-relative_mortality.R | 91 ++- tests/testthat/test-season.R | 17 tests/testthat/test-seqic_1.R | 10 tests/testthat/test-seqic_10.R | 18 tests/testthat/test-seqic_11.R | 20 tests/testthat/test-seqic_12.R | 22 tests/testthat/test-seqic_13.R | 16 tests/testthat/test-seqic_2.R | 8 tests/testthat/test-seqic_3.R | 16 tests/testthat/test-seqic_4.R | 12 tests/testthat/test-seqic_5.R | 12 tests/testthat/test-seqic_6.R | 20 tests/testthat/test-seqic_7.R | 2 tests/testthat/test-seqic_8.R | 14 tests/testthat/test-seqic_9.R | 24 tests/testthat/test-small_count_label.R | 57 +- tests/testthat/test-stat_sig.R | 9 tests/testthat/test-trauma_case_mix.R | 65 ++ tests/testthat/test-trauma_performance.R | 60 ++ tests/testthat/test-validate_character_factor.R |only tests/testthat/test-validate_choice.R |only tests/testthat/test-validate_class.R |only tests/testthat/test-validate_complete.R |only tests/testthat/test-validate_data_pull.R |only tests/testthat/test-validate_data_structure.R |only 93 files changed, 3779 insertions(+), 3865 deletions(-)
Title: A Tidy Framework for Changepoint Detection Analysis
Description: Changepoint detection algorithms for R are widespread but have
different interfaces and reporting conventions.
This makes the comparative analysis of results difficult.
We solve this problem by providing a tidy, unified interface for several
different changepoint detection algorithms.
We also provide consistent numerical and graphical reporting leveraging
the 'broom' and 'ggplot2' packages.
Author: Benjamin S. Baumer [aut, cre, cph] ,
Biviana Marcela Suarez Sierra [aut] ,
Arrigo Coen [aut] ,
Carlos A. Taimal [aut] ,
Xueheng Shi [ctb]
Maintainer: Benjamin S. Baumer <ben.baumer@gmail.com>
Diff between tidychangepoint versions 1.0.3 dated 2026-01-12 and 1.0.4 dated 2026-02-05
DESCRIPTION | 6 +-- MD5 | 40 +++++++++++------------ NAMESPACE | 11 ++++-- NEWS.md | 5 ++ R/class-mod_cpt.R | 2 - R/class-tidycpt.R | 3 + R/pkg-segmented.R | 68 +++++++++++++++++++++++++++++++--------- R/segment.R | 13 +++++-- R/tidychangepoint-package.R | 5 +- README.md | 4 +- inst/doc/tidychangepoint.html | 6 +-- man/as.segmenter.Rd | 3 + man/changepoints.Rd | 9 ++++- man/diagnose.Rd | 3 + man/fitness.Rd | 6 +-- man/model_args.Rd | 4 +- man/model_name.Rd | 3 + man/reexports.Rd | 4 +- man/seg_params.Rd | 4 +- man/segment.Rd | 6 ++- tests/testthat/test-segmented.R | 15 ++++++++ 21 files changed, 151 insertions(+), 69 deletions(-)
More information about tidychangepoint at CRAN
Permanent link
Title: Approximate Gaussian Processes Using the Fourier Basis
Description: Routines for creating, manipulating, and performing
Bayesian inference about Gaussian processes in
one and two dimensions using the Fourier basis approximation:
simulation and plotting of processes, calculation of
coefficient variances, calculation of process density,
coefficient proposals (for use in MCMC). It uses R environments to
store GP objects as references/pointers.
Author: Christopher Paciorek [aut, cre]
Maintainer: Christopher Paciorek <paciorek@stat.berkeley.edu>
Diff between spectralGP versions 1.3.3 dated 2015-07-01 and 1.3.4 dated 2026-02-05
DESCRIPTION | 15 ++++++++------- MD5 | 12 ++++++------ NEWS | 6 +++++- R/onLoad.R | 2 +- inst/CITATION | 14 +++++++------- man/image.plot.Rd | 2 +- man/spectralGP.Rd | 2 -- 7 files changed, 28 insertions(+), 25 deletions(-)
Title: Read Paradox Database Files into R
Description: Provides a simple and efficient way to read data from Paradox
database files (.db) directly into R as modern 'tibble' data frames.
It uses the underlying 'pxlib' C library, to handle the low-level file format
details and provides a clean, user-friendly R interface.
Author: Daniil Popov [aut, cre]
Maintainer: Daniil Popov <popov.daniil@gmail.com>
Diff between Rparadox versions 0.1.5 dated 2025-09-29 and 0.2.0 dated 2026-02-05
Rparadox-0.1.5/Rparadox/inst/extdata/mushrooms.db |only Rparadox-0.1.5/Rparadox/inst/extdata/mushrooms.mb |only Rparadox-0.1.5/Rparadox/tests/testthat/ref_mushrooms.rds |only Rparadox-0.1.5/Rparadox/tests/testthat/test-interface.R |only Rparadox-0.2.0/Rparadox/DESCRIPTION | 6 Rparadox-0.2.0/Rparadox/MD5 | 60 +++-- Rparadox-0.2.0/Rparadox/NEWS.md | 16 + Rparadox-0.2.0/Rparadox/R/pxlib_close_file.R | 5 Rparadox-0.2.0/Rparadox/R/pxlib_get_data.R | 8 Rparadox-0.2.0/Rparadox/R/pxlib_metadata.R | 56 ++++- Rparadox-0.2.0/Rparadox/R/pxlib_open_file.R | 74 +++++-- Rparadox-0.2.0/Rparadox/R/read_paradox.R | 29 +- Rparadox-0.2.0/Rparadox/R/utils.R | 2 Rparadox-0.2.0/Rparadox/README.md | 45 ++++ Rparadox-0.2.0/Rparadox/build/vignette.rds |binary Rparadox-0.2.0/Rparadox/inst/doc/Rparadox.R | 23 +- Rparadox-0.2.0/Rparadox/inst/doc/Rparadox.Rmd | 34 ++- Rparadox-0.2.0/Rparadox/inst/doc/Rparadox.html | 94 ++++++--- Rparadox-0.2.0/Rparadox/inst/extdata/TypSammlung_encrypted.DB |only Rparadox-0.2.0/Rparadox/inst/extdata/TypSammlung_encrypted.MB |only Rparadox-0.2.0/Rparadox/inst/extdata/country_encrypted.db |only Rparadox-0.2.0/Rparadox/inst/extdata/empty_encrypted.db |only Rparadox-0.2.0/Rparadox/inst/extdata/empty_encrypted.mb |only Rparadox-0.2.0/Rparadox/man/pxlib_open_file.Rd | 47 +++- Rparadox-0.2.0/Rparadox/man/read_paradox.Rd | 6 Rparadox-0.2.0/Rparadox/src/init.c | 4 Rparadox-0.2.0/Rparadox/src/interface.c | 61 +++++ Rparadox-0.2.0/Rparadox/src/paradox.c | 7 Rparadox-0.2.0/Rparadox/src/paradox.h | 2 Rparadox-0.2.0/Rparadox/src/px_head.c | 14 - Rparadox-0.2.0/Rparadox/tests/testthat/test-encryption.R |only Rparadox-0.2.0/Rparadox/tests/testthat/test-get-data.R | 32 --- Rparadox-0.2.0/Rparadox/tests/testthat/test-metadata.R | 104 ++++++++-- Rparadox-0.2.0/Rparadox/tests/testthat/test-px_close_file.R |only Rparadox-0.2.0/Rparadox/tests/testthat/test-pxlib_open_file.R |only Rparadox-0.2.0/Rparadox/tests/testthat/test-read_paradox.R | 2 Rparadox-0.2.0/Rparadox/vignettes/Rparadox.Rmd | 34 ++- 37 files changed, 571 insertions(+), 194 deletions(-)
Title: Load and Wrangle IDMC Displacement Data
Description: Utilities to work with data from the Internal Displacement
Monitoring Centre (IDMC) (<https://www.internal-displacement.org/>),
with convenient functions for loading events data from the IDMC API
and transforming events data to daily displacement estimates.
Author: Giulia Martini [aut, cre, cph]
Maintainer: Giulia Martini <giulia.martini@un.org>
Diff between idmc versions 0.3.1 dated 2024-09-23 and 0.4.1 dated 2026-02-05
DESCRIPTION | 21 MD5 | 54 +- NEWS.md | 8 R/idmc-package.R | 14 R/idmc_get_data.R | 182 +++---- R/idmc_transform_daily.R | 63 +- R/utils-asserts.R | 38 - R/utils-imports.R | 8 R/utils-pipe.R | 28 - README.md | 206 ++++---- build/vignette.rds |binary inst/WORDLIST | 142 ++--- inst/doc/idmc-usage.R | 42 - inst/doc/idmc-usage.Rmd | 92 +-- inst/doc/idmc-usage.html | 815 ++++++++++++++++----------------- man/figures/lifecycle-archived.svg | 2 man/figures/lifecycle-defunct.svg | 2 man/figures/lifecycle-deprecated.svg | 2 man/figures/lifecycle-experimental.svg | 2 man/figures/lifecycle-maturing.svg | 2 man/figures/lifecycle-questioning.svg | 2 man/figures/lifecycle-stable.svg | 2 man/figures/lifecycle-superseded.svg | 2 man/idmc-package.Rd | 46 - man/idmc_get_data.Rd | 54 +- man/idmc_transform_daily.Rd | 131 ++--- man/pipe.Rd | 40 - vignettes/idmc-usage.Rmd | 92 +-- 28 files changed, 1068 insertions(+), 1024 deletions(-)
Title: Data from all Seasons of Survivor (US) TV Series in Tidy Format
Description: Datasets detailing the results, castaways, and events of each
season of Survivor for the US, Australia, South Africa, New Zealand, and the
UK. This includes details on the cast, voting history, immunity and reward
challenges, jury votes, boot order, advantage details, and episode ratings.
Use this for analysis of trends and statistics of the game.
Author: Daniel Oehm [aut, cre],
Carly Levitz [ctb]
Maintainer: Daniel Oehm <danieloehm@gmail.com>
Diff between survivoR versions 2.3.9 dated 2026-01-11 and 2.3.10 dated 2026-02-05
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 5 +++++ R/helpers.R | 2 +- 4 files changed, 12 insertions(+), 7 deletions(-)
Title: Load Test Shiny Applications
Description: Assesses the number of concurrent users 'shiny' applications
are capable of supporting, and for directing application changes in
order to support a higher number of users. Provides facilities for
recording 'shiny' application sessions, playing recorded sessions
against a target server at load, and analyzing the resulting metrics.
Author: Barret Schloerke [aut, cre] ,
Alan Dipert [aut],
Barbara Borges [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Barret Schloerke <barret@posit.co>
Diff between shinyloadtest versions 1.2.0 dated 2024-07-19 and 1.2.1 dated 2026-02-05
DESCRIPTION | 62 ++- MD5 | 53 +-- NEWS.md | 13 R/analysis.R | 275 +++++++++++++++- R/auth.R | 35 +- R/data.R | 14 R/detect.R | 18 - R/enum.R | 19 - R/make_report.R | 157 ++++++--- R/plotting.R | 26 + R/shiny-recorder.R | 171 +++++++--- R/url.R | 8 R/util.R | 26 + data/slt_demo_data_1.rda |binary data/slt_demo_data_16.rda |binary data/slt_demo_data_4.rda |binary inst/WORDLIST | 1 man/shinyloadtest-package.Rd | 2 tests/spelling.R | 3 tests/testthat/label-out |only tests/testthat/test-enum.R | 20 - tests/testthat/test-http-header-removal.R | 486 ++++++++++++++++++++++++++++-- tests/testthat/test-labels.R |only tests/testthat/test-report-gen.R | 2 tests/testthat/test-sockjs-message.R | 12 tests/testthat/test-url-construction.R | 10 26 files changed, 1170 insertions(+), 243 deletions(-)
Title: Extract from the Scottish Health and Social Care Open Data
Platform
Description: Extract and interact with data from the Scottish Health and
Social Care Open Data platform <https://www.opendata.nhs.scot>.
Author: Public Health Scotland [cph],
Csilla Scharle [aut],
James Hayes [cre, aut] ,
David Aikman [aut],
Ross Hull [aut]
Maintainer: James Hayes <James.Hayes2@phs.scot>
Diff between phsopendata versions 1.0.2 dated 2026-01-29 and 1.0.3 dated 2026-02-05
DESCRIPTION | 9 +- MD5 | 96 +++++++++++----------- NEWS.md | 4 R/add_context.R | 11 +- R/check_dataset_name.R | 8 - R/check_res_id.R | 2 R/dump_download.R | 8 - R/get_dataset.R | 50 ++++++----- R/get_dataset_additional_info.R | 16 +-- R/get_latest_resource.R | 13 +- R/get_latest_resource_id.R | 20 +--- R/get_resource.R | 76 ++++++++--------- R/get_resource_sql.R | 21 ++-- R/list_datasets.R | 7 - R/list_resources.R | 14 +-- R/parse_col_select.R | 2 R/parse_error.R | 15 ++- R/parse_row_filters.R | 15 +-- R/phs_GET.R | 4 R/suggest_dataset_name.R | 4 R/use_dump_check.R | 72 +++++++--------- man/get_dataset.Rd | 13 ++ man/get_dataset_additional_info.Rd | 5 - man/get_latest_resource.Rd | 8 + man/get_resource.Rd | 2 man/get_resource_sql.Rd | 2 man/list_datasets.Rd | 5 - man/list_resources.Rd | 5 - tests/spelling.R | 3 tests/testthat/test-add_context.R | 24 ++--- tests/testthat/test-check_dataset_name.R | 5 - tests/testthat/test-check_res_id.R | 5 - tests/testthat/test-dump_download.R | 4 tests/testthat/test-get_dataset.R | 22 ++--- tests/testthat/test-get_dataset_additional_info.R | 2 tests/testthat/test-get_dataset_context.R | 16 +-- tests/testthat/test-get_latest_resource.R | 17 ++- tests/testthat/test-get_latest_resource_id.R | 2 tests/testthat/test-get_resource.R | 61 +++++++------ tests/testthat/test-get_resource_context.R | 10 +- tests/testthat/test-get_resource_dump.R | 10 +- tests/testthat/test-get_resource_sql.R | 2 tests/testthat/test-list_datasets.R | 4 tests/testthat/test-list_resources.R | 4 tests/testthat/test-parse_col_select.R | 12 +- tests/testthat/test-parse_error.R | 4 tests/testthat/test-parse_row_filters.R | 10 +- tests/testthat/test-phs_GET.R | 2 tests/testthat/test-use_dump_check.R | 10 +- 49 files changed, 388 insertions(+), 348 deletions(-)
Title: Methods for Penetrance Estimation in Family-Based Studies
Description: Implements statistical methods for estimating disease penetrance in
family-based studies. Penetrance refers to the probability of disease§
manifestation in individuals carrying specific genetic variants. The package
provides tools for age-specific penetrance estimation, handling missing data,
and accounting for ascertainment bias in family studies.
Cite as: Kubista, N., Braun, D. & Parmigiani, G. (2024) <doi:10.48550/arXiv.2411.18816>.
Author: Sol Rosito [cre],
BayesMendel Lab [aut]
Maintainer: Sol Rosito <bmendel@jimmy.harvard.edu>
Diff between penetrance versions 0.1.1 dated 2025-04-02 and 0.1.2 dated 2026-02-05
DESCRIPTION | 16 MD5 | 14 README.md | 4 build/vignette.rds |binary inst/doc/simulation_study.html | 647 +++++++++++++++++++++++------------- inst/doc/simulation_study_real.html | 374 +++++++++++++++----- inst/doc/using_penetrance.html | 625 +++++++++++++++++++++++++--------- man/penetrance.Rd | 5 8 files changed, 1188 insertions(+), 497 deletions(-)
Title: A Zero-Inflated Beta Random Effect Model
Description: A two-part zero-inflated Beta regression model with random
effects (ZIBR) for testing the association between microbial abundance
and clinical covariates for longitudinal microbiome data. Eric Z. Chen
and Hongzhe Li (2016) <doi:10.1093/bioinformatics/btw308>.
Author: Eric Zhang Chen [aut, cph],
Charlie Bushman [cre]
Maintainer: Charlie Bushman <ctbushman@gmail.com>
Diff between ZIBR versions 1.0.2 dated 2023-10-17 and 1.0.3 dated 2026-02-05
DESCRIPTION | 10 - MD5 | 16 +- NEWS.md | 6 + README.md | 1 build/vignette.rds |binary inst/doc/zibr.R | 13 +- inst/doc/zibr.Rmd | 9 - inst/doc/zibr.html | 289 +++++++++++++++++++++-------------------------------- vignettes/zibr.Rmd | 9 - 9 files changed, 153 insertions(+), 200 deletions(-)
Title: Continuous-Time Mediation
Description: Computes effect sizes, standard errors, and confidence intervals
for total, direct, and indirect effects in continuous-time mediation models
as described in Pesigan, Russell, and Chow (2025) <doi:10.1037/met0000779>.
Author: Ivan Jacob Agaloos Pesigan [aut, cre, cph] ,
Michael A. Russell [ctb] ,
Sy-Miin Chow [ctb]
Maintainer: Ivan Jacob Agaloos Pesigan <r.jeksterslab@gmail.com>
Diff between cTMed versions 1.0.8 dated 2025-10-13 and 1.0.9 dated 2026-02-05
DESCRIPTION | 15 +-- MD5 | 131 ++++++++++++++++--------------- NAMESPACE | 5 + NEWS.md | 6 + R/cTMed-boot-beta-dot.R | 3 R/cTMed-boot-med-std.R | 2 R/cTMed-boot-med.R | 2 R/cTMed-delta-med-std.R | 2 R/cTMed-delta-med.R | 2 R/cTMed-direct-std.R | 2 R/cTMed-direct.R | 2 R/cTMed-indirect-std.R | 2 R/cTMed-indirect.R | 12 ++ R/cTMed-mc-med-std.R | 2 R/cTMed-mc-med.R | 2 R/cTMed-med-std.R | 2 R/cTMed-med.R | 2 R/cTMed-methods-ctmedboot.R | 160 +++++++++++++++++++++----------------- R/cTMed-methods-ctmeddelta.R | 165 ++++++++++++++++++++-------------------- R/cTMed-methods-ctmedmc.R | 141 ++++++++++++++++++---------------- R/cTMed-methods-ctmedmed.R | 135 ++++++++++++++++++-------------- R/cTMed-methods-ctmedtraj.R | 72 ++++++++++++----- R/cTMed-plot-central-dot.R | 2 R/cTMed-posterior-med-std-dot.R |only R/cTMed-posterior-med.R | 2 R/cTMed-trajectory.R | 2 R/wald-probs-of-alpha-dot.R | 11 +- build/partial.rdb |binary man/BootBeta.Rd | 10 +- man/BootBetaStd.Rd | 10 +- man/BootIndirectCentral.Rd | 10 +- man/BootMed.Rd | 10 +- man/BootMedStd.Rd | 10 +- man/BootTotalCentral.Rd | 10 +- man/DeltaBeta.Rd | 10 +- man/DeltaBetaStd.Rd | 10 +- man/DeltaIndirectCentral.Rd | 10 +- man/DeltaMed.Rd | 10 +- man/DeltaMedStd.Rd | 10 +- man/DeltaTotalCentral.Rd | 10 +- man/Direct.Rd | 10 +- man/DirectStd.Rd | 10 +- man/Indirect.Rd | 10 +- man/IndirectCentral.Rd | 10 +- man/IndirectStd.Rd | 10 +- man/MCBeta.Rd | 10 +- man/MCBetaStd.Rd | 10 +- man/MCIndirectCentral.Rd | 10 +- man/MCMed.Rd | 10 +- man/MCMedStd.Rd | 10 +- man/MCTotalCentral.Rd | 10 +- man/Med.Rd | 10 +- man/MedStd.Rd | 10 +- man/PosteriorBeta.Rd | 10 +- man/PosteriorIndirectCentral.Rd | 10 +- man/PosteriorMed.Rd | 10 +- man/PosteriorTotalCentral.Rd | 10 +- man/Total.Rd | 10 +- man/TotalCentral.Rd | 10 +- man/TotalStd.Rd | 10 +- man/print.ctmedtraj.Rd | 4 man/summary.ctmedboot.Rd | 4 man/summary.ctmeddelta.Rd | 4 man/summary.ctmedmc.Rd | 4 man/summary.ctmedtraj.Rd | 4 src/Makevars | 2 src/Makevars.win | 2 67 files changed, 772 insertions(+), 456 deletions(-)
Title: Miscellaneous Functions for Passive Acoustic Analysis
Description: A collection of miscellaneous functions for passive acoustics.
Much of the content here is adapted to R from code written by other people.
If you have any ideas of functions to add, please contact Taiki Sakai.
Author: Taiki Sakai [aut, cre],
Jay Barlow [ctb],
Julie Oswald [ctb],
Val Schmidt [ctb]
Maintainer: Taiki Sakai <taiki.sakai@noaa.gov>
Diff between PAMmisc versions 1.12.6 dated 2025-06-10 and 1.12.7 dated 2026-02-05
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 5 +++++ R/fastReadWave.R | 3 +++ R/getFigshareInfo.R | 16 ++++++++-------- man/getFigshareInfo.Rd | 2 +- src/file.c | 12 +++++++++--- 7 files changed, 35 insertions(+), 21 deletions(-)
Title: Evolutionary Transcriptomics
Description: Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.
Author: Hajk-Georg Drost [aut, cre] ,
Stefan Manolache [aut, ctb] ,
Jaruwatana Sodai Lotharukpong [aut, ctb] ,
Nikola Kalabova [aut, ctb] ,
Filipa Martins Costa [aut, ctb],
Kristian K Ullrich [aut, ctb]
Maintainer: Hajk-Georg Drost <hajk-georg.drost@tuebingen.mpg.de>
Diff between myTAI versions 2.3.4 dated 2025-11-11 and 2.3.5 dated 2026-02-05
DESCRIPTION | 8 +-- MD5 | 70 +++++++++++++++++----------------- NAMESPACE | 2 NEWS.md | 4 + R/destroy_pattern.R | 21 ++++------ R/phyloset_base.R | 43 ++++++++++++++++++++ R/phyloset_bulk.R | 2 R/plot_gene_heatmap.R | 12 ++++- R/plot_signature.R | 15 ++++--- R/stat_generic_conservation_test.R | 5 +- README.md | 3 - build/vignette.rds |binary inst/doc/myTAI.Rmd | 2 inst/doc/myTAI.html | 7 +-- inst/doc/other-strata.html | 4 - inst/doc/phylo-expression-object.html | 4 - inst/doc/phylostratigraphy.Rmd | 8 +-- inst/doc/phylostratigraphy.html | 13 ++---- inst/doc/tai-gallery.Rmd | 2 inst/doc/tai-gallery.html | 57 ++++++++++++++------------- inst/doc/tai-stats.html | 56 +++++++++++++-------------- inst/doc/tai-transform.html | 16 +++---- inst/doc/taxonomy.R | 8 +-- inst/doc/taxonomy.Rmd | 2 inst/doc/taxonomy.html | 39 +++++++----------- man/BulkPhyloExpressionSet_from_df.Rd | 2 man/as_BulkPhyloExpressionSet.Rd | 2 man/diagnose_test_robustness.Rd | 5 +- man/dot-plot_gene_heatmap_impl.Rd | 3 + man/get_phylomap.Rd |only man/get_strata_legend.Rd |only man/plot_gene_heatmap.Rd | 3 + man/plot_signature.Rd | 5 -- vignettes/myTAI.Rmd | 2 vignettes/phylostratigraphy.Rmd | 8 +-- vignettes/tai-gallery.Rmd | 2 vignettes/taxonomy.Rmd | 2 37 files changed, 248 insertions(+), 189 deletions(-)
Title: Introduction to Sports Analytics using R (ISAR) Data
Description: We provide data sets used in the textbook "Introduction to Sports Analytics using R" by Elmore and Urbaczweski (2025).
Author: Ryan Elmore [cre, aut]
Maintainer: Ryan Elmore <Ryan.Elmore@du.edu>
Diff between ISAR versions 1.0.1 dated 2025-08-18 and 1.0.2 dated 2026-02-05
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++++++++- R/wnba_player_shots_2024.R |only R/wnba_player_shots_2025.R |only R/wnba_seattle_pbp_2024.R |only R/wnba_seattle_pbp_2025.R |only data/wnba_player_shots_2024.rda |only data/wnba_player_shots_2025.rda |only data/wnba_seattle_pbp_2024.rda |only data/wnba_seattle_pbp_2025.rda |only man/wnba_player_shots_2024.Rd |only man/wnba_player_shots_2025.Rd |only man/wnba_seattle_pbp_2024.Rd |only man/wnba_seattle_pbp_2025.Rd |only 14 files changed, 17 insertions(+), 5 deletions(-)
Title: Constructing Hierarchical Voronoi Tessellations and Overlay
Heatmaps for Data Analysis
Description: Facilitates building topology preserving maps for data analysis.
Author: Zubin Dowlaty [aut, cre],
Mu Sigma, Inc. [cph]
Maintainer: Zubin Dowlaty <zubin.dowlaty@mu-sigma.com>
Diff between HVT versions 26.1.1 dated 2026-01-22 and 26.1.2 dated 2026-02-05
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ NEWS.md |only R/global.R | 2 +- README.md | 20 +++++++++++++++----- inst/doc/HVT.Rmd | 11 +++++++++-- inst/doc/HVT.html | 19 +++++++++++++------ vignettes/HVT.Rmd | 11 +++++++++-- 8 files changed, 58 insertions(+), 26 deletions(-)
Title: Quick Table Generation & Exploratory Analyses on ADaM-Ish
Datasets
Description: Provides users a quick exploratory dive into common
visualizations without writing a single line of code given the users
data follows the Analysis Data Model (ADaM) standards put forth by the
Clinical Data Interchange Standards Consortium (CDISC)
<https://www.cdisc.org>. Prominent modules/ features of the
application are the Table Generator, Population Explorer, and the
Individual Explorer. The Table Generator allows users to drag and drop
variables and desired statistics (frequencies, means, ANOVA, t-test,
and other summary statistics) into bins that automagically create
stunning tables with validated information. The Population Explorer
offers various plots to visualize general trends in the population
from various vantage points. Plot modules currently include scatter
plot, spaghetti plot, box plot, histogram, means plot, and bar plot.
Each plot type allows the user to plot uploaded variables against one
another, and dissect the population by filtering out certain subjects.
La [...truncated...]
Author: Aaron Clark [aut, cre] ,
Jeff Thompson [aut],
Teresa Wilson [aut],
Nate Mockler [ccp, led],
Maya Gans [aut],
Robert Krajcik [ctb],
Marly Gotti [ctb],
Ryan Harrison [aut] ,
Biogen Inc [cph]
Maintainer: Aaron Clark <clark.aaronchris@gmail.com>
Diff between tidyCDISC versions 0.2.1 dated 2023-03-16 and 0.2.2 dated 2026-02-05
tidyCDISC-0.2.1/tidyCDISC/vignettes/cran_figures/03-age_mean.PNG |only tidyCDISC-0.2.1/tidyCDISC/vignettes/cran_figures/04-diabp_mean.PNG |only tidyCDISC-0.2.1/tidyCDISC/vignettes/cran_figures/drill_down_events.PNG |only tidyCDISC-0.2.1/tidyCDISC/vignettes/cran_figures/drill_down_visits.PNG |only tidyCDISC-0.2.1/tidyCDISC/vignettes/cran_figures/line_plot_mean_over_time_breakdown.PNG |only tidyCDISC-0.2.1/tidyCDISC/vignettes/cran_figures/line_plot_mean_over_time_tidyCDISC.PNG |only tidyCDISC-0.2.1/tidyCDISC/vignettes/cran_figures/quick_upload_then_tg_tidyCDISC.PNG |only tidyCDISC-0.2.1/tidyCDISC/vignettes/cran_figures/quick_upload_then_tg_tidyCDISC_red.PNG |only tidyCDISC-0.2.1/tidyCDISC/vignettes/cran_figures/t_disp.PNG |only tidyCDISC-0.2.1/tidyCDISC/vignettes/cran_figures/t_disp_red.PNG |only tidyCDISC-0.2.2/tidyCDISC/DESCRIPTION | 29 tidyCDISC-0.2.2/tidyCDISC/MD5 | 266 tidyCDISC-0.2.2/tidyCDISC/NAMESPACE | 275 tidyCDISC-0.2.2/tidyCDISC/NEWS.md | 212 tidyCDISC-0.2.2/tidyCDISC/R/app_config.R | 64 tidyCDISC-0.2.2/tidyCDISC/R/app_server.R | 100 tidyCDISC-0.2.2/tidyCDISC/R/app_ui.R | 168 tidyCDISC-0.2.2/tidyCDISC/R/data-example.R | 44 tidyCDISC-0.2.2/tidyCDISC/R/data-phuse_TDF_ADaM.R | 94 tidyCDISC-0.2.2/tidyCDISC/R/global.R | 317 tidyCDISC-0.2.2/tidyCDISC/R/golem_utils_server.R | 148 tidyCDISC-0.2.2/tidyCDISC/R/golem_utils_ui.R | 658 tidyCDISC-0.2.2/tidyCDISC/R/mod_dataComply.R | 332 tidyCDISC-0.2.2/tidyCDISC/R/mod_dataComplyRules.R | 148 tidyCDISC-0.2.2/tidyCDISC/R/mod_dataComplyRules_fct_helpers.R | 664 tidyCDISC-0.2.2/tidyCDISC/R/mod_dataComply_fct_helpers.R | 666 tidyCDISC-0.2.2/tidyCDISC/R/mod_dataUpload.R | 434 tidyCDISC-0.2.2/tidyCDISC/R/mod_indvExpPat.R | 386 tidyCDISC-0.2.2/tidyCDISC/R/mod_indvExpPatEvents.R | 448 tidyCDISC-0.2.2/tidyCDISC/R/mod_indvExpPatVisits.R | 1094 tidyCDISC-0.2.2/tidyCDISC/R/mod_indvExpPatVisits_fct_plot.R | 646 tidyCDISC-0.2.2/tidyCDISC/R/mod_indvExp_fct_buildEvents.R | 436 tidyCDISC-0.2.2/tidyCDISC/R/mod_indvExp_fct_organizeEvent.R | 224 tidyCDISC-0.2.2/tidyCDISC/R/mod_indvExp_srv.R | 336 tidyCDISC-0.2.2/tidyCDISC/R/mod_indvExp_ui.R | 534 tidyCDISC-0.2.2/tidyCDISC/R/mod_indvExp_utils_helpers.R | 772 tidyCDISC-0.2.2/tidyCDISC/R/mod_popExp.R | 886 tidyCDISC-0.2.2/tidyCDISC/R/mod_popExp_boxplot.R | 210 tidyCDISC-0.2.2/tidyCDISC/R/mod_popExp_fct_boxplot.R | 126 tidyCDISC-0.2.2/tidyCDISC/R/mod_popExp_fct_heatCorr.R | 530 tidyCDISC-0.2.2/tidyCDISC/R/mod_popExp_fct_km.R | 317 tidyCDISC-0.2.2/tidyCDISC/R/mod_popExp_fct_line.R | 456 tidyCDISC-0.2.2/tidyCDISC/R/mod_popExp_fct_scatterplot.R | 590 tidyCDISC-0.2.2/tidyCDISC/R/mod_popExp_fct_spaghettiplot.R | 124 tidyCDISC-0.2.2/tidyCDISC/R/mod_popExp_heatCorr.R | 462 tidyCDISC-0.2.2/tidyCDISC/R/mod_popExp_km.R | 585 tidyCDISC-0.2.2/tidyCDISC/R/mod_popExp_line.R | 754 tidyCDISC-0.2.2/tidyCDISC/R/mod_popExp_scatter.R | 404 tidyCDISC-0.2.2/tidyCDISC/R/mod_popExp_spaghetti.R | 212 tidyCDISC-0.2.2/tidyCDISC/R/mod_popExp_ui.R | 189 tidyCDISC-0.2.2/tidyCDISC/R/mod_popExp_utils.R | 190 tidyCDISC-0.2.2/tidyCDISC/R/mod_selectData.R | 186 tidyCDISC-0.2.2/tidyCDISC/R/mod_tableGen.R | 2192 - tidyCDISC-0.2.2/tidyCDISC/R/mod_tableGen_fct_anova.R | 336 tidyCDISC-0.2.2/tidyCDISC/R/mod_tableGen_fct_blocks.R | 188 tidyCDISC-0.2.2/tidyCDISC/R/mod_tableGen_fct_chg.R | 288 tidyCDISC-0.2.2/tidyCDISC/R/mod_tableGen_fct_freq.R | 368 tidyCDISC-0.2.2/tidyCDISC/R/mod_tableGen_fct_max_freq.R | 314 tidyCDISC-0.2.2/tidyCDISC/R/mod_tableGen_fct_mean.R | 346 tidyCDISC-0.2.2/tidyCDISC/R/mod_tableGen_fct_meanSummary.R | 64 tidyCDISC-0.2.2/tidyCDISC/R/mod_tableGen_fct_methods.R | 374 tidyCDISC-0.2.2/tidyCDISC/R/mod_tableGen_fct_nested_freq.R | 622 tidyCDISC-0.2.2/tidyCDISC/R/mod_tableGen_fct_non_missing.R | 264 tidyCDISC-0.2.2/tidyCDISC/R/mod_tableGen_fct_y.R | 296 tidyCDISC-0.2.2/tidyCDISC/R/mod_tableGen_ui.R | 310 tidyCDISC-0.2.2/tidyCDISC/R/mod_tableGen_utils.R | 1310 - tidyCDISC-0.2.2/tidyCDISC/R/run_app.R | 40 tidyCDISC-0.2.2/tidyCDISC/R/sysdata.rda |binary tidyCDISC-0.2.2/tidyCDISC/R/utils-pipe.R | 24 tidyCDISC-0.2.2/tidyCDISC/R/utils_SAScompare.R | 862 tidyCDISC-0.2.2/tidyCDISC/R/utils_adam.R |only tidyCDISC-0.2.2/tidyCDISC/R/utils_helpers.R | 815 tidyCDISC-0.2.2/tidyCDISC/R/utils_read_data.R |only tidyCDISC-0.2.2/tidyCDISC/R/utils_strObjs.R | 124 tidyCDISC-0.2.2/tidyCDISC/README.md | 401 tidyCDISC-0.2.2/tidyCDISC/build/vignette.rds |binary tidyCDISC-0.2.2/tidyCDISC/inst/WORDLIST | 252 tidyCDISC-0.2.2/tidyCDISC/inst/app/www/accordian.js | 42 tidyCDISC-0.2.2/tidyCDISC/inst/app/www/batchDownload_html.Rmd | 232 tidyCDISC-0.2.2/tidyCDISC/inst/app/www/batchDownload_pdf.Rmd | 198 tidyCDISC-0.2.2/tidyCDISC/inst/app/www/email.svg | 90 tidyCDISC-0.2.2/tidyCDISC/inst/app/www/logo.svg | 218 tidyCDISC-0.2.2/tidyCDISC/inst/app/www/recipe.js | 376 tidyCDISC-0.2.2/tidyCDISC/inst/app/www/script.js | 604 tidyCDISC-0.2.2/tidyCDISC/inst/app/www/styles.css | 736 tidyCDISC-0.2.2/tidyCDISC/inst/app/www/sync_divs.js | 48 tidyCDISC-0.2.2/tidyCDISC/inst/app/www/timevis.css | 104 tidyCDISC-0.2.2/tidyCDISC/inst/app/www/yeti.css |11010 +++++----- tidyCDISC-0.2.2/tidyCDISC/inst/doc/getting_started.R | 102 tidyCDISC-0.2.2/tidyCDISC/inst/doc/getting_started.Rmd | 534 tidyCDISC-0.2.2/tidyCDISC/inst/doc/getting_started.html | 1074 tidyCDISC-0.2.2/tidyCDISC/inst/golem-config.yml | 16 tidyCDISC-0.2.2/tidyCDISC/man/adae.Rd | 38 tidyCDISC-0.2.2/tidyCDISC/man/adlbc.Rd | 38 tidyCDISC-0.2.2/tidyCDISC/man/adsl.Rd | 38 tidyCDISC-0.2.2/tidyCDISC/man/adtte.Rd | 38 tidyCDISC-0.2.2/tidyCDISC/man/advs.Rd | 38 tidyCDISC-0.2.2/tidyCDISC/man/app_methods.Rd | 134 tidyCDISC-0.2.2/tidyCDISC/man/col_for_list_expr.Rd | 68 tidyCDISC-0.2.2/tidyCDISC/man/common_rownames.Rd | 60 tidyCDISC-0.2.2/tidyCDISC/man/data_to_filter.Rd | 60 tidyCDISC-0.2.2/tidyCDISC/man/data_to_use_str.Rd | 72 tidyCDISC-0.2.2/tidyCDISC/man/example_dat1.Rd | 42 tidyCDISC-0.2.2/tidyCDISC/man/example_dat2.Rd | 42 tidyCDISC-0.2.2/tidyCDISC/man/get_levels.Rd | 70 tidyCDISC-0.2.2/tidyCDISC/man/prep_adae.Rd | 66 tidyCDISC-0.2.2/tidyCDISC/man/prep_adsl.Rd | 62 tidyCDISC-0.2.2/tidyCDISC/man/prep_bds.Rd | 60 tidyCDISC-0.2.2/tidyCDISC/man/pretty_IDs.Rd | 54 tidyCDISC-0.2.2/tidyCDISC/man/run_app.Rd | 34 tidyCDISC-0.2.2/tidyCDISC/man/show_adamish_alert.Rd |only tidyCDISC-0.2.2/tidyCDISC/man/std_footnote.Rd | 40 tidyCDISC-0.2.2/tidyCDISC/man/suggest_adam_column_mapping.Rd |only tidyCDISC-0.2.2/tidyCDISC/man/suggest_adam_domain.Rd |only tidyCDISC-0.2.2/tidyCDISC/man/tg_gt.Rd | 48 tidyCDISC-0.2.2/tidyCDISC/man/validate_adamish.Rd |only tidyCDISC-0.2.2/tidyCDISC/man/varN_fctr_reorder.Rd | 66 tidyCDISC-0.2.2/tidyCDISC/tests/spelling.R | 10 tidyCDISC-0.2.2/tidyCDISC/tests/testthat.R | 10 tidyCDISC-0.2.2/tidyCDISC/tests/testthat/DESCRIPTION |only tidyCDISC-0.2.2/tidyCDISC/tests/testthat/test-mod_dataComplyRules_fct_helpers.R | 66 tidyCDISC-0.2.2/tidyCDISC/tests/testthat/test-mod_dataComply_fct_helpers.R | 836 tidyCDISC-0.2.2/tidyCDISC/tests/testthat/test-mod_indvExpPatVisits_fct_plot.R | 158 tidyCDISC-0.2.2/tidyCDISC/tests/testthat/test-mod_indvExp_fct_buildEvents.R | 154 tidyCDISC-0.2.2/tidyCDISC/tests/testthat/test-mod_popExp_km.R |only tidyCDISC-0.2.2/tidyCDISC/tests/testthat/test-mod_tableGen_fct_anova.R | 58 tidyCDISC-0.2.2/tidyCDISC/tests/testthat/test-mod_tableGen_fct_chg.R | 66 tidyCDISC-0.2.2/tidyCDISC/tests/testthat/test-popExp_fct_boxplot.R | 36 tidyCDISC-0.2.2/tidyCDISC/tests/testthat/test-popExp_fct_scatterplot.R | 76 tidyCDISC-0.2.2/tidyCDISC/tests/testthat/test-popExp_fct_spaghettiplot.R | 38 tidyCDISC-0.2.2/tidyCDISC/tests/testthat/test-tableGen_fct_blocks.R | 68 tidyCDISC-0.2.2/tidyCDISC/tests/testthat/test-tableGen_fct_freq.R | 110 tidyCDISC-0.2.2/tidyCDISC/tests/testthat/test-tableGen_fct_max_freq.R | 110 tidyCDISC-0.2.2/tidyCDISC/tests/testthat/test-tableGen_fct_mean.R | 66 tidyCDISC-0.2.2/tidyCDISC/tests/testthat/test-tableGen_fct_methods.R | 48 tidyCDISC-0.2.2/tidyCDISC/tests/testthat/test-tableGen_fct_nested_freq.R | 136 tidyCDISC-0.2.2/tidyCDISC/tests/testthat/test-tableGen_fct_non_missing.R | 98 tidyCDISC-0.2.2/tidyCDISC/tests/testthat/test-tableGen_fct_y_freq.R | 102 tidyCDISC-0.2.2/tidyCDISC/vignettes/cran_figures/03-age_mean.jpeg |only tidyCDISC-0.2.2/tidyCDISC/vignettes/cran_figures/04-diabp_mean.jpeg |only tidyCDISC-0.2.2/tidyCDISC/vignettes/cran_figures/drill_down_events.jpeg |only tidyCDISC-0.2.2/tidyCDISC/vignettes/cran_figures/drill_down_visits.jpeg |only tidyCDISC-0.2.2/tidyCDISC/vignettes/cran_figures/line_plot_mean_over_time_breakdown.jpeg |only tidyCDISC-0.2.2/tidyCDISC/vignettes/cran_figures/line_plot_mean_over_time_tidyCDISC.jpeg |only tidyCDISC-0.2.2/tidyCDISC/vignettes/cran_figures/quick_upload_then_tg_tidyCDISC_red.jpeg |only tidyCDISC-0.2.2/tidyCDISC/vignettes/cran_figures/t_disp_red.jpeg |only tidyCDISC-0.2.2/tidyCDISC/vignettes/getting_started.Rmd | 534 147 files changed, 22789 insertions(+), 22049 deletions(-)
Title: Adaptive Machine Learning-Powered, Context-Matching Tool for
Single-Cell and Spatial Transcriptomics Annotation
Description: Annotates single-cell and spatial-transcriptomic (ST) data using context-matching marker datasets. It creates a unified marker list (`Markers_list`) from multiple sources: built-in curated databases ('Cellmarker2', 'PanglaoDB', 'scIBD', 'TCellSI', 'PCTIT', 'PCTAM'), Seurat objects with cell labels, or user-provided Excel tables. SlimR first uses adaptive machine learning for parameter optimization, and then offers two automated annotation approaches: 'cluster-based' and 'per-cell'. Cluster-based annotation assigns one label per cluster, expression-based probability calculation, and AUC validation. Per-cell annotation assigns labels to individual cells using three scoring methods with adaptive thresholds and ratio-based confidence filtering, plus optional UMAP spatial smoothing, making it ideal for heterogeneous clusters and rare cell types. The package also supports semi-automated workflows with heatmaps, feature plots, and combined visualizations for manual annotation. For more detail [...truncated...]
Author: Zhaoqing Wang [aut, cre]
Maintainer: Zhaoqing Wang <zhaoqingwang@mail.sdu.edu.cn>
Diff between SlimR versions 1.1.0 dated 2026-01-20 and 1.1.1 dated 2026-02-05
DESCRIPTION | 12 - LICENSE | 2 MD5 | 48 +++-- NAMESPACE | 12 + NEWS.md | 180 +++++++++++++------- R/Celltype_Annotation_PerCell.R |only R/Celltype_Calculate.R | 27 ++- R/Celltype_Calculate_PerCell.R |only R/Celltype_Verification_PerCell.R |only R/PerCell_Workflow_Example.R |only R/Probability_calculate.R | 11 - R/Probability_parameter.R | 78 +++++--- R/onattach.R | 4 R/plot_pheatmap.R |only README.md | 310 +++++++++++++++++++++++++++-------- man/Celltype_Annotation.Rd | 6 man/Celltype_Annotation_PerCell.Rd |only man/Celltype_Calculate.Rd | 17 + man/Celltype_Calculate_PerCell.Rd |only man/Celltype_Verification.Rd | 6 man/Celltype_Verification_PerCell.Rd |only man/Parameter_Calculate.Rd | 6 man/dot-apply_umap_smoothing.Rd |only man/dot-compute_aucell_scores.Rd |only man/dot-compute_weighted_scores.Rd |only man/percell_workflow.Rd |only man/plot.pheatmap.Rd |only tests |only 28 files changed, 524 insertions(+), 195 deletions(-)
Title: Processing of Accelerometry Data with 'GGIR' in mMARCH
Description: Mobile Motor Activity Research Consortium for Health (mMARCH) is a collaborative network of studies of clinical and community samples that employ common clinical, biological, and digital mobile measures across involved studies. One of the main scientific goals of mMARCH sites is developing a better understanding of the inter-relationships between accelerometry-measured physical activity (PA), sleep (SL), and circadian rhythmicity (CR) and mental and physical health in children, adolescents, and adults. Currently, there is no consensus on a standard procedure for a data processing pipeline of raw accelerometry data, and few open-source tools to facilitate their development. The R package 'GGIR' is the most prominent open-source software package that offers great functionality and tremendous user flexibility to process raw accelerometry data. However, even with 'GGIR', processing done in a harmonized and reproducible fashion requires a non-trivial amount of expertise combined with a care [...truncated...]
Author: Wei Guo [aut, cre],
Andrew Leroux [aut],
Vadim Zipunnikov [aut],
Kathleen Merikangas [aut]
Maintainer: Wei Guo <wei.guo3@nih.gov>
Diff between mMARCH.AC versions 3.2.0.1 dated 2025-04-25 and 3.3.4.0 dated 2026-02-05
DESCRIPTION | 10 MD5 | 36 - NAMESPACE | 1 R/MakeSleepDataMatrix.R | 14 R/NormalizeGGIRDate.R |only R/module2_summary.pipeline.R | 33 - build/vignette.rds |binary inst/doc/features.dictionary.xlsx |binary inst/doc/mMARCH.AC.html | 78 ++ inst/extdata/example/afterGGIR/Example_module0.maincall.R | 3 inst/extdata/example/afterGGIR/module5_Example_Data_process_report.Rmd | 53 +- inst/extdata/example/afterGGIR/module6_Example_NonWear.report.Rmd | 10 inst/extdata/example/afterGGIR/module7a_Example_calculate_newfeatures.Rmd | 42 - inst/extdata/example/afterGGIR/module7b_Example_merge_GGIRfeatures.Rmd | 112 ++-- inst/extdata/example/afterGGIR/module7c_Example_runJIVE.Rmd | 54 +- inst/extdata/example/afterGGIR/module7d_Example_calculate_WD_WE_avg_features.Rmd | 36 - inst/template/features.dictionary.xlsx |binary inst/template/module7b_merge_GGIRfeatures.Rmd | 263 +++++----- inst/template/module7c_runJIVE.Rmd | 2 man/NormalizeGGIRDate.Rd |only 20 files changed, 456 insertions(+), 291 deletions(-)
Title: Enrich Figures and Tables with Custom Headers and Footers and
More
Description: A simple and flexible tool designed to create enriched figures and tables by providing a way to add text
around them through predefined or custom layouts.
Any input which is convertible to 'grob' is supported, like 'ggplot', 'gt' or 'flextable'.
Based on R 'grid' graphics, for more details see Paul Murrell (2018) <doi:10.1201/9780429422768>.
Author: Maciej Nasinski [aut, cre],
Alexandra Wall [aut],
Sarah Robson [aut],
Pritish Dash [aut],
Jennifer Winick-Ng [aut],
Lily Nan [ctb],
Alphonse Kwizera [ctb],
Agota Bodoni [ctb],
Eilis Meldrum-Dolan [ctb],
Gary Cao [ctb],
UCB S.A., Belgium [cph, fnd]
Maintainer: Maciej Nasinski <Maciej.Nasinski@ucb.com>
Diff between gridify versions 0.7.5 dated 2025-11-13 and 0.7.7 dated 2026-02-05
DESCRIPTION | 12 ++--- MD5 | 36 ++++++++-------- NEWS.md | 11 +++++ R/layout_issues.R | 2 README.md | 10 +++- inst/doc/gridify.html | 2 inst/doc/simple_examples.R | 84 +++++++++++++++++++-------------------- inst/doc/simple_examples.Rmd | 11 ++--- inst/doc/simple_examples.html | 11 +---- inst/doc/transparency.html | 2 man/complex_layout.Rd | 2 man/figures/README-example-1.png |binary man/layout_issue.Rd | 2 man/pharma_layout.Rd | 2 man/pharma_layout_A4.Rd | 2 man/pharma_layout_base.Rd | 2 man/pharma_layout_letter.Rd | 2 man/simple_layout.Rd | 2 vignettes/simple_examples.Rmd | 11 ++--- 19 files changed, 110 insertions(+), 96 deletions(-)
Title: Get Data from the Swiss Federal Statistical Office
Description: Search and download data from the Swiss Federal Statistical Office (BFS) APIs <https://www.bfs.admin.ch/>.
Author: Felix Luginbuhl [aut, cre, cph] ,
Marius Hodel [ctb] ,
Janosch Brenzel-Weiss [ctb],
Joao Martins [ctb],
Philipp Baumann [ctb]
Maintainer: Felix Luginbuhl <felix.luginbuhl@protonmail.ch>
Diff between BFS versions 0.7.0 dated 2025-11-03 and 0.7.1 dated 2026-02-05
BFS-0.7.0/BFS/R/bfs_search_catalog-DESKTOP-1S038UM.R |only BFS-0.7.0/BFS/tests/testthat/test-bfs_search_catalog-DESKTOP-1S038UM.R |only BFS-0.7.1/BFS/DESCRIPTION | 6 +++--- BFS-0.7.1/BFS/MD5 | 8 +++----- BFS-0.7.1/BFS/NEWS.md | 7 +++++++ BFS-0.7.1/BFS/tests/testthat/test-bfs_get_sse_data.R | 2 +- 6 files changed, 14 insertions(+), 9 deletions(-)
Title: Dynamic Inferences from Time Series (with Interactions)
Description: Autoregressive distributed lag (A[R]DL) models (and their reparameterized equivalent, the Generalized Error-Correction Model [GECM]) are the workhorse models in uncovering dynamic inferences. ADL models are simple to estimate; this is what makes them attractive. Once these models are estimated, what is less clear is how to uncover a rich set of dynamic inferences from these models. We provide tools for recovering those inferences. These tools apply to traditional time-series quantities of interest: especially instantaneous effects for any period and cumulative effects for any period (including the long-run effect). They also allow for a variety of shock histories to be applied to the independent variable (beyond just a one-time, one-unit increase) as well as the recovery of inferences in levels for shocks applies to (in)dependent variables in differences (what we call the Generalized Dynamic Response Function). These effects are also available for the general conditional dynamic model [...truncated...]
Author: Soren Jordan [aut, cre, cph] ,
Garrett N. Vande Kamp [aut],
Reshi Rajan [aut]
Maintainer: Soren Jordan <sorenjordanpols@gmail.com>
Diff between tseffects versions 0.1.4 dated 2025-10-09 and 0.2.1 dated 2026-02-05
tseffects-0.1.4/tseffects/man/GDTE.calculator.Rd |only tseffects-0.1.4/tseffects/man/pte.calculator.Rd |only tseffects-0.2.1/tseffects/DESCRIPTION | 11 tseffects-0.2.1/tseffects/MD5 | 42 tseffects-0.2.1/tseffects/NAMESPACE | 14 tseffects-0.2.1/tseffects/R/tseffects.R | 2141 +++++++++++++++----- tseffects-0.2.1/tseffects/README.md |only tseffects-0.2.1/tseffects/build/vignette.rds |only tseffects-0.2.1/tseffects/inst/doc |only tseffects-0.2.1/tseffects/inst/tseffects-manual.pdf |binary tseffects-0.2.1/tseffects/man/GDRF.adl.plot.Rd |only tseffects-0.2.1/tseffects/man/GDRF.gecm.plot.Rd |only tseffects-0.2.1/tseffects/man/GDTE.adl.plot.Rd | 1 tseffects-0.2.1/tseffects/man/GDTE.gecm.plot.Rd | 3 tseffects-0.2.1/tseffects/man/adl.dummy.checks.Rd |only tseffects-0.2.1/tseffects/man/gecm.dummy.checks.Rd |only tseffects-0.2.1/tseffects/man/gecm.to.adl.Rd |only tseffects-0.2.1/tseffects/man/general.calculator.Rd |only tseffects-0.2.1/tseffects/man/interact.adl.plot.Rd |only tseffects-0.2.1/tseffects/man/pulse.calculator.Rd |only tseffects-0.2.1/tseffects/man/what.to.return.Rd |only tseffects-0.2.1/tseffects/tests |only tseffects-0.2.1/tseffects/vignettes |only 23 files changed, 1712 insertions(+), 500 deletions(-)
Title: Sequential Trial Emulation
Description: Implementation of sequential trial emulation for the analysis of observational databases.
The 'SEQTaRget' software accommodates time-varying treatments and confounders, as well as binary
and failure time outcomes. 'SEQTaRget' allows to compare both static and dynamic strategies,
can be used to estimate observational analogs of intention-to-treat
and per-protocol effects, and can adjust for potential selection bias
induced by losses-to-follow-up. (Paper to come).
Author: Ryan O'Dea [aut, cre] ,
Alejandro Szmulewicz [aut] ,
Tom Palmer [aut] ,
Miguel Hernan [aut] ,
The President and Fellows of Harvard College [cph]
Maintainer: Ryan O'Dea <ryan.odea@psi.ch>
Diff between SEQTaRget versions 1.3.4 dated 2026-01-23 and 1.3.5 dated 2026-02-05
DESCRIPTION | 6 +-- MD5 | 12 +++--- NEWS.md | 6 +++ R/class_methods.R | 10 +++-- R/internal_hazard.R | 21 +++++----- inst/doc/SEQuential.html | 94 +++++++++++++++++++++++------------------------ inst/doc/censoring.html | 4 +- 7 files changed, 82 insertions(+), 71 deletions(-)
Title: Rocket-Fast Clinical Research Reporting
Description: Description of the tables, both grouped and not grouped, with some associated data management actions,
such as sorting the terms of the variables and deleting terms with zero numbers.
Author: USMR CHU de Bordeaux [aut, cre],
Valentine Renaudeau [aut],
Marion Kret [aut],
Matisse Decilap [aut],
Sahardid Mohamed Houssein [aut],
Thomas Ferte [aut]
Maintainer: USMR CHU de Bordeaux <astreinte.usmr@chu-bordeaux.fr>
Diff between RastaRocket versions 1.0.1 dated 2026-01-21 and 1.0.2 dated 2026-02-05
RastaRocket-1.0.1/RastaRocket/R/add_by_n_function.R |only RastaRocket-1.0.1/RastaRocket/R/add_by_n_noNA_function.R |only RastaRocket-1.0.1/RastaRocket/R/modify_table_body_func.R |only RastaRocket-1.0.1/RastaRocket/man/add_by_n.Rd |only RastaRocket-1.0.1/RastaRocket/man/add_by_n_noNA.Rd |only RastaRocket-1.0.1/RastaRocket/man/modify_table_body_func.Rd |only RastaRocket-1.0.2/RastaRocket/DESCRIPTION | 6 RastaRocket-1.0.2/RastaRocket/MD5 | 61 RastaRocket-1.0.2/RastaRocket/NAMESPACE | 9 RastaRocket-1.0.2/RastaRocket/NEWS.md | 8 RastaRocket-1.0.2/RastaRocket/R/add_missing_info.R | 62 RastaRocket-1.0.2/RastaRocket/R/base_table.R | 20 RastaRocket-1.0.2/RastaRocket/R/custom_headers.R | 18 RastaRocket-1.0.2/RastaRocket/R/custom_round.R | 8 RastaRocket-1.0.2/RastaRocket/R/customize_table.R | 52 RastaRocket-1.0.2/RastaRocket/R/customize_table_body_function.R | 2 RastaRocket-1.0.2/RastaRocket/R/desc_ei_per_grade.R | 189 - RastaRocket-1.0.2/RastaRocket/R/desc_ei_per_pt.R | 200 - RastaRocket-1.0.2/RastaRocket/R/desc_var_function.R | 3 RastaRocket-1.0.2/RastaRocket/R/globals.R |only RastaRocket-1.0.2/RastaRocket/R/plot_dumbell.R | 35 RastaRocket-1.0.2/RastaRocket/README.md | 12 RastaRocket-1.0.2/RastaRocket/build/vignette.rds |binary RastaRocket-1.0.2/RastaRocket/inst/doc/DescribeAE.html | 451 ++-- RastaRocket-1.0.2/RastaRocket/inst/doc/RastaRocketVignette.html | 1075 ++++------ RastaRocket-1.0.2/RastaRocket/inst/doc/SetupProject.html | 5 RastaRocket-1.0.2/RastaRocket/man/add_missing_info.Rd | 17 RastaRocket-1.0.2/RastaRocket/man/add_pvalues.Rd | 52 RastaRocket-1.0.2/RastaRocket/man/base_table.Rd | 9 RastaRocket-1.0.2/RastaRocket/man/custom_headers.Rd | 86 RastaRocket-1.0.2/RastaRocket/man/custom_round.Rd | 52 RastaRocket-1.0.2/RastaRocket/man/customize_table.Rd | 17 RastaRocket-1.0.2/RastaRocket/man/customize_table_body.Rd | 2 RastaRocket-1.0.2/RastaRocket/man/desc_ei_per_grade.Rd | 2 RastaRocket-1.0.2/RastaRocket/man/select_plus.Rd | 80 35 files changed, 1226 insertions(+), 1307 deletions(-)
Title: A Blazing Fast Implementation of Random Forest
Description: Yet another implementation of the Random Forest method by Breiman (2001) <doi:10.1023/A:1010933404324>, written in Rust and tailored towards stability, correctness, efficiency and scalability on modern multi-core machines.
Handles both classification and regression, as well as provides permutation feature importance via a novel, highly optimised algorithm.
Author: Miron Bartosz Kursa [aut, cre] ,
Krzysztof Piotr Piwonski [aut]
Maintainer: Miron Bartosz Kursa <m@mbq.me>
Diff between fru versions 0.0.2 dated 2026-02-04 and 0.0.3 dated 2026-02-05
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- R/a.R | 5 ++++- configure | 1 - configure.win | 1 - man/fru.Rd | 7 +++++-- man/solidify.Rd | 2 +- src/Makevars | 4 ++-- src/Makevars.win | 4 ++-- src/fru/Cargo.lock | 4 ++-- src/fru/api.h | 4 ++++ src/wrapper.c | 8 ++++---- 12 files changed, 38 insertions(+), 30 deletions(-)
Title: Ecosystem Gas Fluxes Calculations for Closed Loop Chamber Setup
Description: Toolbox to process raw data from closed loop flux chamber (or tent)
setups into ecosystem gas fluxes usable for analysis. It goes from a
data frame of gas concentration over time (which can contain several
measurements) and a meta data file indicating which measurement was done
when, to a data frame of ecosystem gas fluxes including quality diagnostics.
Organized with one function per step, maximizing user flexibility and backwards
compatibility. Different models to estimate the fluxes from the raw data are
available: exponential as described in
Zhao et al (2018) <doi:10.1016/j.agrformet.2018.08.022>, exponential as described in
Hutchinson and Mosier (1981) <doi:10.2136/sssaj1981.03615995004500020017x>,
quadratic, and linear. Other functions include quality assessment,
plotting for visual check, calculation of fluxes based on the setup
specific parameters (chamber size, plot area, ...), gross primary production
and transpiration rate calculation, and light response curves.
Author: Joseph Gaudard [aut, cre] ,
Richard James Telford [aut]
Maintainer: Joseph Gaudard <joseph.gaudard@pm.me>
Diff between fluxible versions 1.3.4 dated 2025-11-11 and 1.3.6 dated 2026-02-05
DESCRIPTION | 14 +-- MD5 | 18 ++-- NEWS.md | 8 + R/flux_calc.R | 13 +- R/flux_fitting.R | 21 ++-- R/flux_fitting_lm.R | 2 inst/doc/data-prep.R | 15 +++ inst/doc/data-prep.Rmd | 22 ++++ inst/doc/data-prep.html | 216 ++++++++++++++++++++++++++---------------------- vignettes/data-prep.Rmd | 22 ++++ 10 files changed, 221 insertions(+), 130 deletions(-)
Title: Generic Reproducible Parallel Backend for 'foreach' Loops
Description: Provides functions to perform
reproducible parallel foreach loops, using independent
random streams as generated by L'Ecuyer's combined
multiple-recursive generator [L'Ecuyer (1999), <DOI:10.1287/opre.47.1.159>].
It enables to easily convert standard '%dopar%' loops into
fully reproducible loops, independently of the number
of workers, the task scheduling strategy, or the chosen
parallel environment and associated foreach backend.
Author: Renaud Gaujoux [aut],
Emilio L. Saenz Guillen [cre]
Maintainer: Emilio L. Saenz Guillen <Emilio.Saenz-Guillen@citystgeorges.ac.uk>
Diff between doRNG versions 1.8.6.2 dated 2025-04-02 and 1.8.6.3 dated 2026-02-05
DESCRIPTION | 29 - MD5 | 21 R/doRNG-package.R | 153 +++-- R/doRNG.R | 1152 ++++++++++++++++++++++---------------------- build |only demo/doRNG.R | 118 ++-- man/doRNG-package.Rd | 116 ++-- man/doRNGversion.Rd | 24 man/grapes-dorng-grapes.Rd | 120 +++- man/infoDoRNG.Rd | 16 man/registerDoRNG.Rd | 106 ++-- tests/testthat/test-dorng.r | 844 ++++++++++++++++---------------- 12 files changed, 1406 insertions(+), 1293 deletions(-)
Title: Linear Models for Sequence Count Data
Description: Provides scalable generalized linear and mixed effects models tailored for sequence count data analysis (e.g., analysis of 16S or RNA-seq data). Uses Dirichlet-multinomial sampling to quantify uncertainty in relative abundance or relative expression conditioned on observed count data.
Implements scale models as a generalization of normalizations which account for uncertainty in scale (e.g., total abundances) as described in Nixon et al. (2025) <doi:10.1186/s13059-025-03609-3> and McGovern et al. (2025) <doi:10.1101/2025.08.05.668734>.
Author: Justin Silverman [aut, cre],
Greg Gloor [aut],
Kyle McGovern [aut, ctb]
Maintainer: Justin Silverman <JustinSilverman@psu.edu>
Diff between ALDEx3 versions 1.0.1 dated 2026-02-03 and 1.0.2 dated 2026-02-05
DESCRIPTION | 6 +++--- MD5 | 4 ++-- tests/testthat/test-aldex-mem.R | 21 +++++++++------------ 3 files changed, 14 insertions(+), 17 deletions(-)
Title: Restricted Statistical Estimation and Inference for Linear
Models
Description: Allow for easy-to-use testing or evaluating of linear equality and inequality restrictions about parameters and effects in (generalized) linear statistical models.
Author: Leonard Vanbrabant [aut, cre],
Rebecca Kuiper [aut],
Yves Rosseel [ctb],
Aleksandra Dacko [ctb]
Maintainer: Leonard Vanbrabant <info@restriktor.org>
Diff between restriktor versions 0.6-10 dated 2024-12-19 and 0.6-30 dated 2026-02-05
restriktor-0.6-10/restriktor/tests |only restriktor-0.6-30/restriktor/DESCRIPTION | 9 restriktor-0.6-30/restriktor/MD5 | 129 restriktor-0.6-30/restriktor/NAMESPACE | 10 restriktor-0.6-30/restriktor/R/compute_chiBarSquare_weights.R | 2 restriktor-0.6-30/restriktor/R/conGLM.R | 16 restriktor-0.6-30/restriktor/R/conLM.R | 16 restriktor-0.6-30/restriktor/R/conMLM.R | 16 restriktor-0.6-30/restriktor/R/conRLM.R | 24 restriktor-0.6-30/restriktor/R/conRLM_fit.R | 43 restriktor-0.6-30/restriktor/R/conTest.R | 18 restriktor-0.6-30/restriktor/R/conTest_ceq_conGLM_F_Wald_score.R | 4 restriktor-0.6-30/restriktor/R/conTest_ceq_conLM_F_Wald_score.R | 2 restriktor-0.6-30/restriktor/R/conTest_ceq_conRLM_F_Wald_score.R | 4 restriktor-0.6-30/restriktor/R/conTest_conGLM.R | 36 restriktor-0.6-30/restriktor/R/conTest_conLM.R | 34 restriktor-0.6-30/restriktor/R/conTest_conMLM.R | 12 restriktor-0.6-30/restriktor/R/conTest_conRLM.R | 30 restriktor-0.6-30/restriktor/R/conTest_summary.R | 6 restriktor-0.6-30/restriktor/R/con_constraints.R | 44 restriktor-0.6-30/restriktor/R/con_incomplete_lm.R | 4 restriktor-0.6-30/restriktor/R/con_partable.R | 4 restriktor-0.6-30/restriktor/R/con_pvalue.R | 14 restriktor-0.6-30/restriktor/R/con_solver.R | 2 restriktor-0.6-30/restriktor/R/goric.R | 776 ++-- restriktor-0.6-30/restriktor/R/goric_benchmark.R | 480 +- restriktor-0.6-30/restriktor/R/goric_benchmark_plot.R | 17 restriktor-0.6-30/restriktor/R/goric_benchmark_print.R | 7 restriktor-0.6-30/restriktor/R/goric_benchmark_utilities.R | 304 + restriktor-0.6-30/restriktor/R/goric_calculate_IC_weights.R | 69 restriktor-0.6-30/restriktor/R/goric_compute_loglik_complement.R | 48 restriktor-0.6-30/restriktor/R/goric_evSyn.R | 776 +++- restriktor-0.6-30/restriktor/R/goric_evSyn_plot.R | 90 restriktor-0.6-30/restriktor/R/goric_evSyn_print.R | 24 restriktor-0.6-30/restriktor/R/goric_evSyn_summary.R | 62 restriktor-0.6-30/restriktor/R/goric_evSyn_utilities.R | 59 restriktor-0.6-30/restriktor/R/goric_penalty.R | 4 restriktor-0.6-30/restriktor/R/goric_print.R | 89 restriktor-0.6-30/restriktor/R/goric_utilities.R | 121 restriktor-0.6-30/restriktor/R/gorica_est.R | 112 restriktor-0.6-30/restriktor/R/gorica_est_summary.R | 2 restriktor-0.6-30/restriktor/R/restriktor.R | 3 restriktor-0.6-30/restriktor/R/restriktor_summary.R | 8 restriktor-0.6-30/restriktor/R/utilities.R | 77 restriktor-0.6-30/restriktor/R/zzz.R | 8 restriktor-0.6-30/restriktor/build/partial.rdb |only restriktor-0.6-30/restriktor/build/vignette.rds |binary restriktor-0.6-30/restriktor/data/Kuiper2012estimates.rda |only restriktor-0.6-30/restriktor/inst/doc/Guidelines_GORIC-benchmarks.R | 218 + restriktor-0.6-30/restriktor/inst/doc/Guidelines_GORIC-benchmarks.Rmd | 378 +- restriktor-0.6-30/restriktor/inst/doc/Guidelines_GORIC-benchmarks.html | 1616 +++++----- restriktor-0.6-30/restriktor/inst/doc/Guidelines_GORIC_output.R | 120 restriktor-0.6-30/restriktor/inst/doc/Guidelines_GORIC_output.Rmd | 105 restriktor-0.6-30/restriktor/inst/doc/Guidelines_GORIC_output.html | 1299 ++++---- restriktor-0.6-30/restriktor/inst/doc/Tutorial_GORICA_restriktor_lavaan.R |only restriktor-0.6-30/restriktor/inst/doc/Tutorial_GORICA_restriktor_lavaan.Rmd |only restriktor-0.6-30/restriktor/inst/doc/Tutorial_GORICA_restriktor_lavaan.html |only restriktor-0.6-30/restriktor/inst/doc/Tutorial_GORIC_restriktor_evSyn.R |only restriktor-0.6-30/restriktor/inst/doc/Tutorial_GORIC_restriktor_evSyn.Rmd |only restriktor-0.6-30/restriktor/inst/doc/Tutorial_GORIC_restriktor_evSyn.html |only restriktor-0.6-30/restriktor/man/Kuiper2012estimates.Rd |only restriktor-0.6-30/restriktor/man/calculate_IC_weights.Rd | 6 restriktor-0.6-30/restriktor/man/evSyn.Rd | 338 +- restriktor-0.6-30/restriktor/man/goric.Rd | 87 restriktor-0.6-30/restriktor/man/goric_benchmark.Rd | 10 restriktor-0.6-30/restriktor/man/restriktor-package.rd | 4 restriktor-0.6-30/restriktor/man/restriktor_methods.Rd | 8 restriktor-0.6-30/restriktor/vignettes/Guidelines_GORIC-benchmarks.Rmd | 378 +- restriktor-0.6-30/restriktor/vignettes/Guidelines_GORIC_output.Rmd | 105 restriktor-0.6-30/restriktor/vignettes/Tutorial_GORICA_restriktor_lavaan.Rmd |only restriktor-0.6-30/restriktor/vignettes/Tutorial_GORIC_restriktor_evSyn.Rmd |only 71 files changed, 5064 insertions(+), 3223 deletions(-)
Title: Tidy Dataframes and Expressions with Statistical Details
Description: Utilities for producing dataframes with rich details for the
most common types of statistical approaches and tests: parametric,
nonparametric, robust, and Bayesian t-test, one-way ANOVA, correlation
analyses, contingency table analyses, and meta-analyses. The functions
are pipe-friendly and provide a consistent syntax to work with tidy
data. These dataframes additionally contain expressions with
statistical details, and can be used in graphing packages. This
package also forms the statistical processing backend for
'ggstatsplot'. References: Patil (2021) <doi:10.21105/joss.03236>.
Author: Indrajeet Patil [cre, aut, cph]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between statsExpressions versions 1.7.2 dated 2025-12-06 and 1.7.3 dated 2026-02-05
DESCRIPTION | 20 MD5 | 32 - NEWS.md | 4 R/add-expression-col.R | 366 +++++++-------- R/centrality-description.R | 2 R/contingency-table.R | 308 ++++++------- R/helpers-easystats.R | 20 R/one-sample-test.R | 208 ++++----- R/pairwise-comparisons.R | 618 +++++++++++++-------------- R/reexports.R | 42 - R/statsExpressions-package.R | 64 +- R/two-sample-test.R | 4 README.md | 28 - tests/testthat/_snaps/oneway-anova-bayes.md | 46 ++ tests/testthat/test-long-to-wide-converter.R | 5 tests/testthat/test-oneway-anova-bayes.R | 66 ++ tests/testthat/test-tidy-model-expressions.R | 216 ++++----- 17 files changed, 1087 insertions(+), 962 deletions(-)
More information about statsExpressions at CRAN
Permanent link
Title: A 'chronomètre' is a 'stopwatch'
Description: As a 'chronomètre' is a 'stopwatch', this package offers a simple stopwatch, and
in particular one that can be shared with Python (using the corresponding package of the same
name available via 'PyPi') such that both interpreters operate on the same object instance and
shown in the demo file, as well as in the unit tests.
Author: Dirk Eddelbuettel [aut, cre]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between chronometre versions 0.0.1 dated 2026-01-29 and 0.0.2 dated 2026-02-05
ChangeLog | 15 +++++++++++++ DESCRIPTION | 8 +++---- MD5 | 12 +++++----- README.md | 58 +++++++++++++++++++++++++++++++++++++---------------- build/partial.rdb |binary demo/chronometre.R | 20 +++++++----------- inst/NEWS.Rd | 8 +++++++ 7 files changed, 82 insertions(+), 39 deletions(-)
Title: Archaeological Time Series
Description: A toolkit for archaeological time series and time intervals.
This package provides a system of classes and methods to represent and
work with archaeological time series and time intervals. Dates are
represented as "rata die" and can be converted to (virtually) any
calendar defined by Reingold and Dershowitz (2018)
<doi:10.1017/9781107415058>. This packages offers a simple API that
can be used by other specialized packages.
Author: Nicolas Frerebeau [aut, cre] ,
Joe Roe [aut] ,
Brice Lebrun [art] ,
Universite Bordeaux Montaigne [fnd] ,
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between aion versions 1.6.0 dated 2025-10-01 and 1.7.0 dated 2026-02-05
DESCRIPTION | 6 ++--- MD5 | 51 +++++++++++++++++++++++---------------------- NAMESPACE | 1 NEWS.md | 4 +++ R/AllClasses.R | 4 +-- R/AllGenerics.R | 18 +++++++++++++++ R/aion-internal.R | 10 ++++++++ R/aion-package.R | 2 - R/coerce.R | 27 +++++++++++++---------- R/series.R | 2 - R/subset.R | 16 ++++++++++++++ README.md | 5 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 2 - inst/doc/aion.html | 12 +++++----- inst/doc/extending.html | 12 +++++----- inst/doc/stratigraphy.html | 12 +++++----- inst/examples/ex-flip.R |only inst/tinytest/test_flip.R |only man/TimeSeries-class.Rd | 4 +-- man/aion-package.Rd | 2 - man/as.data.frame.Rd | 11 +++++++-- man/flip.Rd |only man/labels.Rd | 1 man/length.Rd | 1 man/names.Rd | 1 man/subset.Rd | 1 28 files changed, 135 insertions(+), 70 deletions(-)
Title: An MCMC Sampler Using the t-Walk Algorithm
Description: Implements the t-walk algorithm, a general-purpose, self-adjusting
Markov Chain Monte Carlo (MCMC) sampler for continuous distributions as
described by Christen & Fox (2010) <doi:10.1214/10-BA603>. The t-walk requires
no tuning and is robust for a wide range of target distributions, including
high-dimensional and multimodal problems. This implementation includes an
option for running multiple chains in parallel to accelerate sampling and
facilitate convergence diagnostics.
Author: Rodrigo Fonseca Villa [aut, cre]
Maintainer: Rodrigo Fonseca Villa <rodrigo03.villa@gmail.com>
Diff between Rtwalk versions 2.0.0 dated 2026-02-02 and 2.0.1 dated 2026-02-05
DESCRIPTION | 16 +- MD5 | 23 ++- NAMESPACE | 14 ++ NEWS.md | 15 +- R/diagnostics.R |only R/s3-methods.R |only R/twalk_main.R | 28 ++-- README.md | 13 - inst/doc/validation_study.R | 115 ----------------- inst/doc/validation_study.Rmd | 117 ----------------- inst/doc/validation_study.html | 270 +++++++++++------------------------------ man/calculate_diagnostics.Rd |only man/twalk-methods.Rd |only man/visualize_results.Rd |only vignettes/validation_study.Rmd | 117 ----------------- 15 files changed, 148 insertions(+), 580 deletions(-)
Title: Localization Microscopy Data Analysis
Description: Read, register and compare point sets from single molecule localization microscopy.
Author: Jean-Karim Heriche [cre, aut]
Maintainer: Jean-Karim Heriche <heriche@embl.de>
Diff between LOMAR versions 0.5.1 dated 2025-12-22 and 0.5.2 dated 2026-02-05
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ src/kde.h | 2 +- src/tdautils/gridUtils.h | 3 ++- src/topology/dynamic-persistence.hpp | 6 +++--- src/topology/rips.h | 2 +- src/topology/simplex.h | 2 +- 7 files changed, 17 insertions(+), 16 deletions(-)
Title: Evolutionary Version of the Metropolis-Hastings Algorithm
Description: Provides computational methods for detecting adverse high-order drug interactions
from individual case safety reports using statistical techniques,
allowing the exploration of higher-order interactions among drug cocktails.
Author: Jules Bangard [aut, cre]
Maintainer: Jules Bangard <jules.bangard@etu.unistra.fr>
Diff between emcAdr versions 1.2 dated 2025-02-27 and 1.3 dated 2026-02-05
DESCRIPTION | 15 +-- MD5 | 37 ++++---- R/Firth_regression.R |only R/RcppExports.R | 97 +++++++++++++++++++++- README.md | 9 +- build/partial.rdb |binary build/vignette.rds |binary data/ATC_Tree_UpperBound_2024.rda |binary data/FAERS_myopathy.rda |binary inst/doc/base.html | 60 +++++++------- man/DistributionApproximation.Rd | 2 man/combination_data_frame.Rd |only man/compute_hypergeom_cocktail.Rd |only man/remove_higher_cocktails.Rd |only man/run_firth_regression.Rd |only man/string_list_to_int_cocktails.Rd | 5 - src/DataManager.cpp | 154 +++++++++++++++++++++++++++++++++--- src/MCMC.cpp | 3 src/Makevars | 33 ------- src/Population.cpp | 8 + src/RcppExports.cpp | 56 ++++++++++++- src/main.cpp | 147 +++++++++++++++++++++++++++++++--- 22 files changed, 503 insertions(+), 123 deletions(-)
Title: Convert Gene IDs Between Each Other and Fetch Annotations from
Biomart
Description: Gene Symbols or Ensembl Gene IDs are converted using the Bimap interface in 'AnnotationDbi' in convertId2() but
that function is only provided as fallback mechanism for the most common use cases in data analysis. The main function
in the package is convert.bm() which queries BioMart using the full capacity of the API provided through the
'biomaRt' package. Presets and defaults are provided for convenience but all "marts", "filters" and "attributes"
can be set by the user. Function convert.alias() converts Gene Symbols to Aliases and vice versa and function likely_symbol()
attempts to determine the most likely current Gene Symbol.
Author: Vidal Fey [aut, cre],
Henrik Edgren [aut]
Maintainer: Vidal Fey <vidal.fey@gmail.com>
Diff between convertid versions 0.2.0 dated 2026-02-03 and 0.2.1 dated 2026-02-05
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/convertId2.R | 11 +++++++++-- man/todisp2.Rd | 5 ++++- 4 files changed, 20 insertions(+), 10 deletions(-)
Title: Generate SVG Information Cards with Embedded Fonts and Badges
Description: Create self-contained SVG information cards with embedded 'Google
Fonts', shields-style badges, and custom logos. Cards are fully
portable SVG files ideal for dashboards, reports, and web applications.
Includes functions to export cards to PNG format and display them in
'R Markdown' and 'Quarto' documents.
Author: Andre Leite [aut, cre],
Hugo Vasconcelos [aut],
Diogo Bezerra [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between cardargus versions 0.2.0 dated 2026-01-31 and 0.2.1 dated 2026-02-05
cardargus-0.2.0/cardargus/R/aliases.R |only cardargus-0.2.0/cardargus/inst/svgs/README.md |only cardargus-0.2.0/cardargus/inst/svgs/example_card.svg |only cardargus-0.2.0/cardargus/inst/svgs/gov_pe3.svg |only cardargus-0.2.0/cardargus/man/fonts_dir.Rd |only cardargus-0.2.0/cardargus/man/register_knitr_engine.Rd |only cardargus-0.2.0/cardargus/tests |only cardargus-0.2.1/cardargus/DESCRIPTION | 12 cardargus-0.2.1/cardargus/MD5 | 83 ++-- cardargus-0.2.1/cardargus/NAMESPACE | 11 cardargus-0.2.1/cardargus/NEWS.md | 8 cardargus-0.2.1/cardargus/R/badges.R | 40 +- cardargus-0.2.1/cardargus/R/cards.R | 33 + cardargus-0.2.1/cardargus/R/chrome.R | 6 cardargus-0.2.1/cardargus/R/fonts.R | 115 ++--- cardargus-0.2.1/cardargus/R/knitr.R | 4 cardargus-0.2.1/cardargus/R/zzz.R | 17 cardargus-0.2.1/cardargus/README.md | 56 ++ cardargus-0.2.1/cardargus/inst/doc/cardargus.R | 2 cardargus-0.2.1/cardargus/inst/doc/cardargus.Rmd | 2 cardargus-0.2.1/cardargus/inst/doc/cardargus.html | 2 cardargus-0.2.1/cardargus/inst/doc/customization.R | 29 + cardargus-0.2.1/cardargus/inst/doc/customization.Rmd | 42 ++ cardargus-0.2.1/cardargus/inst/doc/customization.html | 270 ++++++++------ cardargus-0.2.1/cardargus/inst/doc/export.R | 2 cardargus-0.2.1/cardargus/inst/doc/export.Rmd | 2 cardargus-0.2.1/cardargus/inst/doc/export.html | 2 cardargus-0.2.1/cardargus/inst/svgs/sepe.svg |only cardargus-0.2.1/cardargus/inst/svgs/seplag.svg |only cardargus-0.2.1/cardargus/man/create_badge.Rd | 5 cardargus-0.2.1/cardargus/man/create_badge_row.Rd | 5 cardargus-0.2.1/cardargus/man/figures/cardargus_card.png |binary cardargus-0.2.1/cardargus/man/figures/logo.svg | 30 - cardargus-0.2.1/cardargus/man/font_cache_dir.Rd | 17 cardargus-0.2.1/cardargus/man/font_cache_path.Rd | 6 cardargus-0.2.1/cardargus/man/icon_building.Rd | 5 cardargus-0.2.1/cardargus/man/icon_construction.Rd | 5 cardargus-0.2.1/cardargus/man/icon_house.Rd | 5 cardargus-0.2.1/cardargus/man/icon_map_pin.Rd | 5 cardargus-0.2.1/cardargus/man/icon_money.Rd | 5 cardargus-0.2.1/cardargus/man/install_fonts.Rd | 7 cardargus-0.2.1/cardargus/man/register_cardargus_knitr.Rd |only cardargus-0.2.1/cardargus/man/setup_fonts.Rd | 5 cardargus-0.2.1/cardargus/man/svg_card.Rd | 12 cardargus-0.2.1/cardargus/vignettes/cardargus.Rmd | 2 cardargus-0.2.1/cardargus/vignettes/customization.Rmd | 42 ++ cardargus-0.2.1/cardargus/vignettes/export.Rmd | 2 47 files changed, 537 insertions(+), 359 deletions(-)
Title: Analysis of Basketball Data
Description: Collection of tools to work with European basketball data. Functions available are related to friendly
web scraping, data management and visualization. Data were obtained from <https://www.euroleaguebasketball.net/euroleague/>,
<https://www.euroleaguebasketball.net/eurocup/> and <https://www.acb.com/>, following the instructions
of their respectives robots.txt files, when available. Box score data are available for the three leagues.
Play-by-play and spatial shooting data are also available for the Spanish league. Methods for analysis include a
population pyramid, 2D plots, circular plots of players' percentiles, plots of players' monthly/yearly stats,
team heatmaps, team shooting plots, team four factors plots, cross-tables with the results of regular season games,
maps of nationalities, combinations of lineups, possessions-related variables, timeouts,
performance by periods, personal fouls, offensive rebounds and different types of shooting charts.
Please see Vinue [...truncated...]
Author: Guillermo Vinue [aut, cre]
Maintainer: Guillermo Vinue <guillermo.vinue@uv.es>
Diff between BAwiR versions 1.4.3 dated 2025-12-09 and 1.4.4 dated 2026-02-05
DESCRIPTION | 8 ++-- MD5 | 26 +++++++------- NEWS | 5 ++ R/do_clutch_time.R | 19 +++++----- R/do_reb_off_success.R | 2 - R/get_four_factors_plot.R | 79 ++++++++++++++++++++++++++++++++++--------- inst/doc/BAwiR.html | 4 +- inst/doc/BAwiR_pbp.html | 4 +- inst/doc/BAwiR_sc.R | 62 +++------------------------------ inst/doc/BAwiR_sc.Rmd | 68 +++++-------------------------------- inst/doc/BAwiR_sc.html | 78 +++++++----------------------------------- man/do_clutch_time.Rd | 12 ++++-- man/get_four_factors_plot.Rd | 10 ++++- vignettes/BAwiR_sc.Rmd | 68 +++++-------------------------------- 14 files changed, 160 insertions(+), 285 deletions(-)
Title: R Bindings for 'Automerge' 'CRDT' Library
Description: Provides R bindings to the 'Automerge' Conflict-free
Replicated Data Type ('CRDT') library. 'Automerge' enables automatic
merging of concurrent changes without conflicts, making it ideal for
distributed systems, collaborative applications, and offline-first
architectures. The approach of local-first software was proposed in
Kleppmann, M., Wiggins, A., van Hardenberg, P., McGranaghan, M. (2019)
<doi:10.1145/3359591.3359737>. This package supports all 'Automerge'
data types (maps, lists, text, counters) and provides both low-level
and high-level synchronization protocols for seamless interoperability
with 'JavaScript' and other 'Automerge' implementations.
Author: Charlie Gao [aut, cre] ,
Posit Software, PBC [cph, fnd] ,
Authors of the dependency Rust crates [cph]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between automerge versions 0.2.0 dated 2026-01-31 and 0.2.1 dated 2026-02-05
DESCRIPTION | 8 MD5 | 211 +++--- NAMESPACE | 2 NEWS.md | 6 R/automerge-package.R | 1 R/constants.R | 8 R/convenience.R | 15 R/cursors.R | 15 R/document.R | 82 ++ R/methods.R | 149 ++++ R/objects.R | 42 + R/sync.R | 27 README.md | 10 configure | 2 configure.win | 2 inst/AUTHORS | 38 - inst/doc/automerge.R | 28 inst/doc/automerge.Rmd | 30 inst/doc/automerge.html | 55 + inst/doc/crdt-concepts.R | 46 + inst/doc/crdt-concepts.Rmd | 46 + inst/doc/crdt-concepts.html | 108 ++- inst/doc/quick-reference.R | 3 inst/doc/quick-reference.Rmd | 3 inst/doc/quick-reference.html | 5 inst/doc/sync-protocol.R | 46 + inst/doc/sync-protocol.Rmd | 46 + inst/doc/sync-protocol.html | 121 ++- man/am_apply_changes.Rd | 4 man/am_close.Rd |only man/am_commit.Rd | 3 man/am_counter.Rd | 2 man/am_counter_increment.Rd | 3 man/am_create.Rd | 7 man/am_cursor.Rd | 3 man/am_cursor_position.Rd | 3 man/am_delete.Rd | 2 man/am_delete_path.Rd | 3 man/am_fork.Rd | 3 man/am_get.Rd | 3 man/am_get_actor.Rd | 3 man/am_get_actor_hex.Rd | 3 man/am_get_change_by_hash.Rd | 3 man/am_get_changes.Rd | 3 man/am_get_changes_added.Rd | 4 man/am_get_heads.Rd | 3 man/am_get_history.Rd | 3 man/am_get_last_local_change.Rd | 3 man/am_get_path.Rd | 3 man/am_insert.Rd | 4 man/am_keys.Rd | 4 man/am_length.Rd | 4 man/am_list.Rd | 1 man/am_load.Rd | 11 man/am_map.Rd | 1 man/am_mark.Rd | 3 man/am_marks.Rd | 3 man/am_marks_at.Rd | 3 man/am_merge.Rd | 4 man/am_put.Rd | 3 man/am_put_path.Rd | 3 man/am_rollback.Rd | 4 man/am_save.Rd | 3 man/am_set_actor.Rd | 3 man/am_sync.Rd | 4 man/am_sync_decode.Rd | 3 man/am_sync_encode.Rd | 3 man/am_sync_state_new.Rd | 4 man/am_text.Rd | 1 man/am_text_content.Rd | 3 man/am_text_splice.Rd | 3 man/am_text_update.Rd | 3 man/am_uint64.Rd | 2 man/am_values.Rd | 3 man/as.character.am_text.Rd | 4 man/as.list.am_doc.Rd | 3 man/as_automerge.Rd | 3 man/extract-am_doc.Rd | 4 man/extract-am_object.Rd | 4 man/from_automerge.Rd | 3 man/length.am_doc.Rd | 2 man/names.am_doc.Rd | 2 man/replace-am_doc.Rd | 2 man/replace-am_object.Rd | 4 man/str.am_doc.Rd |only src/automerge.h | 1 src/automerge/rust/Cargo.lock | 317 +++------- src/automerge/rust/automerge-c/Cargo.toml | 2 src/automerge/rust/automerge-c/cmake/Cargo.toml.in | 2 src/automerge/rust/automerge/Cargo.toml | 2 src/automerge/rust/automerge/src/change_graph.rs | 2 src/automerge/rust/automerge/src/op_set2/change/collector.rs | 2 src/automerge/rust/automerge/src/patches/patch_log.rs | 35 - src/automerge/rust/automerge/src/storage/columns/raw_column.rs | 2 src/automerge/rust/vendor.tar.xz |binary src/document.c | 29 src/init.c | 1 src/objects.c | 4 tests/testthat/_snaps/methods.md |only tests/testthat/test-document.R | 22 tests/testthat/test-methods.R | 181 ++++- tools/patch-rust-msrv.sh | 37 - tools/patch-sources.sh | 70 ++ tools/vendor-deps.sh | 18 vignettes/automerge.Rmd | 30 vignettes/crdt-concepts.Rmd | 46 + vignettes/quick-reference.Rmd | 3 vignettes/sync-protocol.Rmd | 46 + 108 files changed, 1645 insertions(+), 540 deletions(-)
Title: Confounder-Adjusted Survival Curves and Cumulative Incidence
Functions
Description: Estimate and plot confounder-adjusted survival curves using
either 'Direct Adjustment', 'Direct Adjustment with Pseudo-Values',
various forms of 'Inverse Probability of Treatment Weighting', two
forms of 'Augmented Inverse Probability of Treatment Weighting',
'Empirical Likelihood Estimation' or 'Targeted Maximum Likelihood Estimation'.
Also includes a significance test for the difference
between two adjusted survival curves and the calculation of adjusted
restricted mean survival times. Additionally enables the user to
estimate and plot cause-specific confounder-adjusted cumulative
incidence functions in the competing risks setting using the same
methods (with some exceptions).
For details, see Denz et. al (2023) <doi:10.1002/sim.9681>.
Author: Robin Denz [aut, cre]
Maintainer: Robin Denz <robin.denz@rub.de>
Diff between adjustedCurves versions 0.11.3 dated 2025-07-13 and 0.11.4 dated 2026-02-05
DESCRIPTION | 6 MD5 | 318 +-- NEWS.md | 13 R/as_ggsurvplot_df.r | 95 R/helper_functions.r | 24 R/method_aiptw_pseudo.r | 11 R/method_direct_pseudo.r | 4 R/method_iptw_pseudo.r | 11 R/method_unadjusted.r | 15 R/plot.adjustedcif.r | 15 R/plot.adjustedsurv.r | 15 R/plot_auc_curve.r | 15 R/risk_tables.r | 652 +++--- inst/doc/adjustedCurves.html | 18 inst/doc/comparing_groups.html | 58 inst/doc/faq.html | 34 inst/doc/faq.rmd | 146 - inst/doc/plot_customization.html | 58 man/as_ggsurvplot_df.Rd | 119 - man/surv_direct.Rd | 289 +- tests/testthat/_snaps/adjusted_curve_test.md | 20 tests/testthat/_snaps/adjustedcif.method_S3.md | 28 tests/testthat/_snaps/plot.adjustedcif/plot-ci-no-color-steps.svg | 52 tests/testthat/_snaps/plot.adjustedcif/plot-ci-single-color-steps.svg | 52 tests/testthat/_snaps/plot.adjustedcif/plot-no-arguments.svg | 40 tests/testthat/_snaps/plot.adjustedcif/plot-using-boot.svg | 52 tests/testthat/_snaps/plot.adjustedcif/plot-using-cens-ind-lines-and-things.svg | 102 tests/testthat/_snaps/plot.adjustedcif/plot-using-cens-ind-points-and-things.svg | 234 +- tests/testthat/_snaps/plot.adjustedcif/plot-using-censoring-indicators-lines.svg | 108 - tests/testthat/_snaps/plot.adjustedcif/plot-using-censoring-indicators-points.svg | 102 tests/testthat/_snaps/plot.adjustedcif/plot-using-conf-int-alpha.svg | 52 tests/testthat/_snaps/plot.adjustedcif/plot-using-custom-colors.svg | 40 tests/testthat/_snaps/plot.adjustedcif/plot-using-custom-linetypes.svg | 40 tests/testthat/_snaps/plot.adjustedcif/plot-using-force-bounds.svg | 40 tests/testthat/_snaps/plot.adjustedcif/plot-using-ggplot-theme.svg | 29 tests/testthat/_snaps/plot.adjustedcif/plot-using-iso-reg.svg | 40 tests/testthat/_snaps/plot.adjustedcif/plot-using-labs-title.svg | 40 tests/testthat/_snaps/plot.adjustedcif/plot-using-legend-title-legend-position.svg | 40 tests/testthat/_snaps/plot.adjustedcif/plot-using-linetype-facets-color.svg | 58 tests/testthat/_snaps/plot.adjustedcif/plot-using-many-many-things.svg | 56 tests/testthat/_snaps/plot.adjustedcif/plot-using-max-t.svg | 44 tests/testthat/_snaps/plot.adjustedcif/plot-using-no-colors-ci.svg | 52 tests/testthat/_snaps/plot.adjustedcif/plot-using-single-color.svg | 40 tests/testthat/_snaps/plot.adjustedcif/plot-using-steps.svg | 40 tests/testthat/_snaps/plot.adjustedcif/plot-using-ylim.svg | 44 tests/testthat/_snaps/plot.adjustedcif/plot-with-conf-int.svg | 52 tests/testthat/_snaps/plot.adjustedsurv/mi-no-weights-all.svg | 78 tests/testthat/_snaps/plot.adjustedsurv/mi-no-weights-stratify.svg | 84 tests/testthat/_snaps/plot.adjustedsurv/mi-with-weights-all.svg | 78 tests/testthat/_snaps/plot.adjustedsurv/mi-with-weights-stratify.svg | 84 tests/testthat/_snaps/plot.adjustedsurv/plot-ci-no-color-steps.svg | 36 tests/testthat/_snaps/plot.adjustedsurv/plot-ci-single-color-steps.svg | 36 tests/testthat/_snaps/plot.adjustedsurv/plot-no-arguments.svg | 36 tests/testthat/_snaps/plot.adjustedsurv/plot-using-boot.svg | 36 tests/testthat/_snaps/plot.adjustedsurv/plot-using-cens-ind-lines-and-things.svg | 28 tests/testthat/_snaps/plot.adjustedsurv/plot-using-cens-ind-points-and-things.svg | 28 tests/testthat/_snaps/plot.adjustedsurv/plot-using-censoring-indicators-lines.svg | 36 tests/testthat/_snaps/plot.adjustedsurv/plot-using-censoring-indicators-points.svg | 36 tests/testthat/_snaps/plot.adjustedsurv/plot-using-cif.svg | 36 tests/testthat/_snaps/plot.adjustedsurv/plot-using-conf-int-alpha.svg | 42 tests/testthat/_snaps/plot.adjustedsurv/plot-using-custom-colors.svg | 36 tests/testthat/_snaps/plot.adjustedsurv/plot-using-custom-linetypes.svg | 36 tests/testthat/_snaps/plot.adjustedsurv/plot-using-force-bounds.svg | 36 tests/testthat/_snaps/plot.adjustedsurv/plot-using-iso-reg.svg | 36 tests/testthat/_snaps/plot.adjustedsurv/plot-using-labs-title.svg | 36 tests/testthat/_snaps/plot.adjustedsurv/plot-using-legend-title-legend-position.svg | 36 tests/testthat/_snaps/plot.adjustedsurv/plot-using-linetype-facets-color.svg | 50 tests/testthat/_snaps/plot.adjustedsurv/plot-using-max-t.svg | 40 tests/testthat/_snaps/plot.adjustedsurv/plot-using-median-surv-lines.svg | 36 tests/testthat/_snaps/plot.adjustedsurv/plot-using-no-colors-ci.svg | 42 tests/testthat/_snaps/plot.adjustedsurv/plot-using-single-color.svg | 36 tests/testthat/_snaps/plot.adjustedsurv/plot-using-steps.svg | 36 tests/testthat/_snaps/plot.adjustedsurv/plot-using-ylim.svg | 36 tests/testthat/_snaps/plot.adjustedsurv/plot-with-conf-int.svg | 42 tests/testthat/_snaps/plot.adjustedsurv/risk-table-all-customized-text.svg | 54 tests/testthat/_snaps/plot.adjustedsurv/risk-table-colors-stratify.svg | 60 tests/testthat/_snaps/plot.adjustedsurv/risk-table-enlarges-x-axis.svg | 70 tests/testthat/_snaps/plot.adjustedsurv/risk-table-height.svg | 54 tests/testthat/_snaps/plot.adjustedsurv/risk-table-labs-all.svg | 54 tests/testthat/_snaps/plot.adjustedsurv/risk-table-labs-stratify.svg | 60 tests/testthat/_snaps/plot.adjustedsurv/risk-table-n-at-risk-strat.svg | 60 tests/testthat/_snaps/plot.adjustedsurv/risk-table-n-at-risk.svg | 54 tests/testthat/_snaps/plot.adjustedsurv/risk-table-n-cens-strat.svg | 60 tests/testthat/_snaps/plot.adjustedsurv/risk-table-n-cens.svg | 54 tests/testthat/_snaps/plot.adjustedsurv/risk-table-n-events-strat.svg | 60 tests/testthat/_snaps/plot.adjustedsurv/risk-table-n-events.svg | 54 tests/testthat/_snaps/plot.adjustedsurv/risk-table-reverse.svg | 60 tests/testthat/_snaps/plot.adjustedsurv/risk-table-stratify-customized-text.svg | 60 tests/testthat/_snaps/plot.adjustedsurv/risk-table-theme.svg | 36 tests/testthat/_snaps/plot.adjustedsurv/risk-table-use-weights-all.svg | 54 tests/testthat/_snaps/plot.adjustedsurv/risk-table-use-weights-stratify.svg | 60 tests/testthat/_snaps/plot.adjustedsurv/risk-table-weights-present-but-not-used.svg | 54 tests/testthat/_snaps/plot.adjustedsurv/risk-table-with-more-breaks.svg | 94 tests/testthat/_snaps/plot.adjustedsurv/risk-table-y-vjust-all.svg | 54 tests/testthat/_snaps/plot.adjustedsurv/risk-table-y-vjust-stratify.svg | 60 tests/testthat/_snaps/plot_auc_curve/plot-custom-linetypes.svg | 32 tests/testthat/_snaps/plot_auc_curve/plot-difference-max-t.svg | 48 tests/testthat/_snaps/plot_auc_curve/plot-difference-rmst-conf-int.svg | 32 tests/testthat/_snaps/plot_auc_curve/plot-difference-rmst.svg | 32 tests/testthat/_snaps/plot_auc_curve/plot-difference-rmtl-conf-int.svg | 32 tests/testthat/_snaps/plot_auc_curve/plot-difference-rmtl-no-arguments.svg | 32 tests/testthat/_snaps/plot_auc_curve/plot-difference-times.svg | 44 tests/testthat/_snaps/plot_auc_curve/plot-facet.svg | 46 tests/testthat/_snaps/plot_auc_curve/plot-labs.svg | 32 tests/testthat/_snaps/plot_auc_curve/plot-linetype.svg | 32 tests/testthat/_snaps/plot_auc_curve/plot-max-t.svg | 40 tests/testthat/_snaps/plot_auc_curve/plot-ratio-color.svg | 36 tests/testthat/_snaps/plot_auc_curve/plot-ratio-linetype.svg | 36 tests/testthat/_snaps/plot_auc_curve/plot-ratio-rmst-conf-int.svg | 28 tests/testthat/_snaps/plot_auc_curve/plot-ratio-rmst.svg | 36 tests/testthat/_snaps/plot_auc_curve/plot-rmst-conf-int.svg | 40 tests/testthat/_snaps/plot_auc_curve/plot-rmst-no-arguments.svg | 32 tests/testthat/_snaps/plot_auc_curve/plot-rmtl-conf-int.svg | 32 tests/testthat/_snaps/plot_auc_curve/plot-rmtl-no-arguments.svg | 36 tests/testthat/_snaps/plot_auc_curve/plot-times.svg | 40 tests/testthat/_snaps/plot_curve_diff/plot-cif-no-arguments.svg | 44 tests/testthat/_snaps/plot_curve_diff/plot-no-arguments.svg | 28 tests/testthat/_snaps/plot_curve_diff/plot-reversed-differences.svg | 28 tests/testthat/_snaps/plot_curve_diff/plot-with-all-texts.svg | 28 tests/testthat/_snaps/plot_curve_diff/plot-with-conf-int-boot.svg | 32 tests/testthat/_snaps/plot_curve_diff/plot-with-conf-int.svg | 36 tests/testthat/_snaps/plot_curve_diff/plot-with-fill-area-lines.svg | 34 tests/testthat/_snaps/plot_curve_diff/plot-with-fill-area-steps.svg | 28 tests/testthat/_snaps/plot_curve_diff/plot-with-integral-linear.svg | 28 tests/testthat/_snaps/plot_curve_diff/plot-with-integral-test.svg | 28 tests/testthat/_snaps/plot_curve_diff/plot-with-integral.svg | 28 tests/testthat/_snaps/plot_curve_diff/plot-with-lines-ci.svg | 36 tests/testthat/_snaps/plot_curve_diff/plot-with-lines.svg | 28 tests/testthat/_snaps/plot_curve_diff/plot-with-loess.svg | 28 tests/testthat/_snaps/plot_curve_diff/plot-with-much-stuff.svg | 36 tests/testthat/_snaps/plot_curve_diff/plot-with-none.svg | 22 tests/testthat/_snaps/plot_curve_diff/plot-with-p-value-linear.svg | 28 tests/testthat/_snaps/plot_curve_diff/plot-with-p-value-test.svg | 28 tests/testthat/_snaps/plot_curve_diff/plot-with-p-value.svg | 28 tests/testthat/_snaps/plot_curve_diff/plot-with-points-ci.svg | 36 tests/testthat/_snaps/plot_curve_diff/plot-with-points.svg | 28 tests/testthat/_snaps/plot_curve_diff/plot-without-line-at-0.svg | 28 tests/testthat/_snaps/plot_curve_ratio/plot-cif-no-arguments.svg | 32 tests/testthat/_snaps/plot_curve_ratio/plot-no-arguments.svg | 28 tests/testthat/_snaps/plot_curve_ratio/plot-reversed-differences.svg | 28 tests/testthat/_snaps/plot_curve_ratio/plot-with-conf-int-boot.svg | 36 tests/testthat/_snaps/plot_curve_ratio/plot-with-conf-int.svg | 30 tests/testthat/_snaps/plot_curve_ratio/plot-with-lines-ci.svg | 24 tests/testthat/_snaps/plot_curve_ratio/plot-with-lines.svg | 28 tests/testthat/_snaps/plot_curve_ratio/plot-without-line-at-ref.svg | 28 tests/testthat/test_MI_adjustedcif.r | 774 +++---- tests/testthat/test_add_rows_with_zero.r | 85 tests/testthat/test_adjusted_curve_diff.r | 126 - tests/testthat/test_adjusted_curve_ratio.r | 132 - tests/testthat/test_adjusted_curve_test.r | 46 tests/testthat/test_adjusted_rmtl.r | 18 tests/testthat/test_as_ggsurvplot_df.r | 92 tests/testthat/test_cif_aiptw_pseudo.r | 423 ++-- tests/testthat/test_cif_direct_pseudo.r | 370 +-- tests/testthat/test_cif_iptw_pseudo.r | 17 tests/testthat/test_plot.adjustedsurv.r | 1027 +++++----- tests/testthat/test_plot_auc_curve.r | 6 tests/testthat/test_plot_curve_diff.r | 346 +-- tests/testthat/test_plot_curve_ratio.r | 4 vignettes/faq.rmd | 146 - 160 files changed, 5683 insertions(+), 5396 deletions(-)
More information about adjustedCurves at CRAN
Permanent link
Title: Easily Handling Data from the ‘m-Path’ Platform
Description: Provides tools for importing and cleaning Experience Sampling
Method (ESM) data collected via the 'm-Path' platform. The goal is
to provide with a few utility functions to be able to read and perform
some common operations in ESM data collected through the 'm-Path'
platform (<https://m-path.io/landing/>). Functions include raw data
handling, format standardization, and basic data checks, as well as to
calculate the response rate in data from ESM studies.
Author: Merijn Mestdagh [aut, cre] ,
Lara Navarrete [aut],
Koen Niemeijer [aut] ,
m-Path Software [cph]
Maintainer: Merijn Mestdagh <merijn.mestdagh@m-path.io>
Diff between mpathr versions 1.0.3 dated 2025-05-15 and 1.0.4 dated 2026-02-05
DESCRIPTION | 8 MD5 | 41 - NAMESPACE | 1 NEWS.md | 6 R/cast_vec.R | 20 R/extract_app_usage.R |only R/mpath_example.R | 1 R/plot_response_rate.R | 39 - R/read_mpath.R | 138 +++-- R/response_rate.R | 44 - R/write_mpath.R | 17 build/vignette.rds |binary inst/doc/mpathr.html | 5 man/extract_app_usage.Rd |only tests/spelling.R | 10 tests/testthat/test-cast_vec.R | 23 tests/testthat/test-extract_app_usage.R |only tests/testthat/test-is_opened_in_excel.R | 4 tests/testthat/test-mpath_example.R | 23 tests/testthat/test-plot_response_rate.R | 42 - tests/testthat/test-read_mpath.R | 789 +++++++++++++++---------------- tests/testthat/test-response_rate.R | 64 +- tests/testthat/test-write_mpath.R | 15 23 files changed, 710 insertions(+), 580 deletions(-)
Title: ISO 3166-1 Country Codes
Description: ISO 3166-1 country codes and ISO 4217 currency codes provided
by the International Organization for Standardization.
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between isocountry versions 0.5.0 dated 2025-07-11 and 0.6.0 dated 2026-02-05
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/data.R | 4 ++-- README.md | 2 ++ data/isocountry.rda |binary data/isocurrency.rda |binary man/isocountry.Rd | 4 ++-- 8 files changed, 21 insertions(+), 15 deletions(-)
Title: Interactive Tutorials and Data for "Discovering Statistics Using
R and RStudio"
Description: Interactive 'R' tutorials and datasets for the textbook Field
(2026), "Discovering Statistics Using R and RStudio",
<https://www.discovr.rocks/>. Interactive tutorials cover general
workflow in 'R' and 'RStudio', summarizing data, visualizing data,
fitting models and bias, correlation, the general linear model (GLM),
moderation, mediation, missing values, comparing means using the GLM
(analysis of variance), comparing adjusted means (analysis of covariance), factorial
designs, multilevel models, repeated measures designs, growth models, exploratory factor analysis (EFA), loglinear analysis, and logistic regression.
There are no functions, only datasets and interactive tutorials.
Author: Andy Field [aut, cre, cph]
Maintainer: Andy Field <andyf@sussex.ac.uk>
Diff between discovr versions 0.2.2 dated 2025-06-06 and 1.0.0 dated 2026-02-05
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Title: Forecasting Using State Space Models
Description: Functions implementing Single Source of Error state space models for purposes of time series analysis and forecasting.
The package includes ADAM (Svetunkov, 2023, <https://openforecast.org/adam/>),
Exponential Smoothing (Hyndman et al., 2008, <doi:10.1007/978-3-540-71918-2>),
SARIMA (Svetunkov & Boylan, 2019 <doi: 10.1080/00207543.2019.1600764>),
Complex Exponential Smoothing (Svetunkov & Kourentzes, 2018, <doi:10.13140/RG.2.2.24986.29123>),
Simple Moving Average (Svetunkov & Petropoulos, 2018 <doi:10.1080/00207543.2017.1380326>)
and several simulation functions. It also allows dealing with intermittent demand based on the
iETS framework (Svetunkov & Boylan, 2019, <doi:10.13140/RG.2.2.35897.06242>).
Author: Ivan Svetunkov [aut, cre]
Maintainer: Ivan Svetunkov <ivan@svetunkov.com>
Diff between smooth versions 4.3.1 dated 2025-10-27 and 4.4.0 dated 2026-02-05
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Title: Stepwise Regression with Assumptions Checking
Description: The stepwise regression with assumptions checking and the possible Box-Cox transformation.
Author: Thidarat Thongsri [aut, cre],
Klairung Samart [aut]
Maintainer: Thidarat Thongsri <k.th.thidarat@gmail.com>
Diff between mlrpro versions 0.1.2 dated 2022-08-10 and 0.1.3 dated 2026-02-05
DESCRIPTION | 10 MD5 | 12 NAMESPACE | 1 R/mlrpro.R | 5363 ++++++++++++++++++++++++++++++--------------- build/vignette.rds |binary inst/doc/Introduction.R | 2 inst/doc/Introduction.html | 127 - 7 files changed, 3715 insertions(+), 1800 deletions(-)
Title: Chunkwise Text-File Processing for 'dplyr'
Description: Data stored in text file can be processed chunkwise using 'dplyr' commands. These
are recorded and executed per data chunk, so large files can be processed with
limited memory using the 'LaF' package.
Author: Edwin de Jonge [aut, cre]
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>
Diff between chunked versions 0.6.1 dated 2025-10-02 and 0.6.2 dated 2026-02-05
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/verbs.R | 8 ++++---- 4 files changed, 14 insertions(+), 10 deletions(-)
Title: Create and Maintain a Relational Database of Data from
PubMed/MEDLINE
Description: Provides a simple interface for extracting various elements from
the publicly available PubMed XML files, incorporating PubMed's regular
updates, and combining the data with the NIH Open Citation Collection. See
Schoenbachler and Hughey (2021) <doi:10.7717/peerj.11071>.
Author: Jake Hughey [aut, cre],
Josh Schoenbachler [aut],
Elliot Outland [aut]
Maintainer: Jake Hughey <jakejhughey@gmail.com>
Diff between pmparser versions 1.0.23 dated 2025-12-15 and 1.0.24 dated 2026-02-05
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Title: Extensible Framework for Data Pattern Exploration
Description: A framework for systematic exploration of
association rules (Agrawal et al., 1994, <https://www.vldb.org/conf/1994/P487.PDF>),
contrast patterns (Chen, 2022, <doi:10.48550/arXiv.2209.13556>),
emerging patterns (Dong et al., 1999, <doi:10.1145/312129.312191>),
subgroup discovery (Atzmueller, 2015, <doi:10.1002/widm.1144>),
and conditional correlations (Hájek, 1978, <doi:10.1007/978-3-642-66943-9>).
User-defined functions may also be supplied to guide custom pattern searches.
Supports both crisp (Boolean) and fuzzy data. Generates candidate conditions
expressed as elementary conjunctions, evaluates them on a dataset, and
inspects the induced sub-data for statistical, logical, or structural
properties such as associations, correlations, or contrasts. Includes methods
for visualization of logical structures and supports interactive exploration
through integrated Shiny applications.
Author: Michal Burda [aut, cre]
Maintainer: Michal Burda <michal.burda@osu.cz>
Diff between nuggets versions 2.1.1 dated 2026-02-03 and 2.1.2 dated 2026-02-05
DESCRIPTION | 10 MD5 | 29 - NAMESPACE | 1 NEWS.md | 5 R/dig.R | 4 R/extract_cols.R | 3 R/is_logicalish.R |only R/ui-aboutTable.R | 2 README.md | 6 inst/doc/data-preparation.html | 30 - inst/doc/nuggets.R | 8 inst/doc/nuggets.Rmd | 26 - inst/doc/nuggets.html | 761 +++++++++++++++++------------------- man/is_logicalish.Rd |only tests/testthat/test-dig.R | 13 tests/testthat/test-is_logicalish.R |only vignettes/nuggets.Rmd | 26 - 17 files changed, 472 insertions(+), 452 deletions(-)
Title: A Multivariate Meta-Analysis Model for High-Dimensional Data
Description: Performs multivariate meta-analysis for high-dimensional data to integrate and collectively analyse individual-level data from multiple studies, as well as to combine summary estimates. This approach accounts for correlation between outcomes, incorporates within‑ and between‑study variability, handles missing values, and uses shrinkage estimation to accommodate high dimensionality. The 'MetaHD' R package provides access to our multivariate meta-analysis approach, along with a comprehensive suite of existing meta-analysis methods, including fixed-effects and random-effects models, Fisher’s method, Stouffer’s method, the weighted Z method, Lancaster’s method, the weighted Fisher’s method, and vote-counting approach. A detailed vignette with example datasets and code for data preparation and analysis is available at <https://alyshadelivera.github.io/MetaHD_vignette/>.
Author: Jayamini Liyanage [aut, cre],
Alysha De Livera [aut],
Luke Prendergast [aut]
Maintainer: Jayamini Liyanage <j.liyanage@latrobe.edu.au>
Diff between MetaHD versions 0.1.3 dated 2024-09-24 and 0.1.4 dated 2026-02-05
DESCRIPTION | 21 - MD5 | 15 - NAMESPACE | 10 R/MetaHD.R | 691 +++++++++++++-------------------------------------- R/MetaHDInput.R |only R/MetaHDpval.R |only R/helper.functions.R |only build |only man/MetaHD.Rd | 118 ++++++-- man/MetaHDInput.Rd | 64 ++-- man/MetaHDpval.Rd |only 11 files changed, 345 insertions(+), 574 deletions(-)
Title: Simulate Forest Resources with the European Forestry Dynamics
Model
Description: An implementation of European Forestry Dynamics Model (EFDM) and
an estimation algorithm for the transition probabilities.
The EFDM is a large-scale forest model that simulates the development of
the forest and estimates volume of wood harvested for any given forested
area. This estimate can be broken down by, for example, species, site
quality, management regime and ownership category.
See Packalen et al. (2015) <doi:10.2788/153990>.
Author: Mikko Kuronen [aut, cre] ,
Minna Raety [aut]
Maintainer: Mikko Kuronen <mikko.kuronen@luke.fi>
Diff between efdm versions 0.2.1 dated 2023-08-17 and 0.2.2 dated 2026-02-05
efdm-0.2.1/efdm/tests/test_factor.R |only efdm-0.2.2/efdm/DESCRIPTION | 13 - efdm-0.2.2/efdm/MD5 | 32 +-- efdm-0.2.2/efdm/R/estim.r | 8 efdm-0.2.2/efdm/README.md |only efdm-0.2.2/efdm/build/vignette.rds |binary efdm-0.2.2/efdm/inst/doc/example.R | 8 efdm-0.2.2/efdm/inst/doc/example.Rmd | 6 efdm-0.2.2/efdm/inst/doc/example.html | 237 +++++++++++++++-------------- efdm-0.2.2/efdm/man/MetsaKasvVyoh.Rd | 44 ++--- efdm-0.2.2/efdm/man/define_activity.Rd | 114 ++++++------- efdm-0.2.2/efdm/man/estimatetransprobs.Rd | 234 ++++++++++++++-------------- efdm-0.2.2/efdm/man/example.Rd | 50 +++--- efdm-0.2.2/efdm/man/prior_ff.Rd | 76 ++++----- efdm-0.2.2/efdm/man/transprobs.Rd | 74 ++++----- efdm-0.2.2/efdm/tests/test_estim.R | 6 efdm-0.2.2/efdm/tests/test_estim.Rout.save | 14 - efdm-0.2.2/efdm/vignettes/example.Rmd | 6 18 files changed, 467 insertions(+), 455 deletions(-)
Title: Canonical Correlations and Tests of Independence
Description: A simple interface for multivariate correlation analysis that unifies various classical
statistical procedures including t-tests, tests in univariate and multivariate linear models,
parametric and nonparametric tests for correlation, Kruskal-Wallis tests, common approximate
versions of Wilcoxon rank-sum and signed rank tests, chi-squared tests of independence, score
tests of particular hypotheses in generalized linear models, canonical correlation analysis and
linear discriminant analysis.
Author: Robert Schlicht [aut, cre]
Maintainer: Robert Schlicht <robert.schlicht@tu-dresden.de>
Diff between cctest versions 2.2.1 dated 2026-01-13 and 2.2.2 dated 2026-02-05
DESCRIPTION | 6 - MD5 | 6 - R/cctest.R | 10 +-- man/cctest.Rd | 186 +++++++++++++++++++++++++++++----------------------------- 4 files changed, 104 insertions(+), 104 deletions(-)
Title: Robust Survey Statistics Estimation
Description: Robust (outlier-resistant) estimators of finite population
characteristics like of means, totals, ratios, regression, etc. Available
methods are M- and GM-estimators of regression, weight reduction,
trimming, and winsorization. The package extends the 'survey'
<https://CRAN.R-project.org/package=survey> package.
Author: Beat Hulliger [aut] ,
Tobias Schoch [aut, cre] ,
Martin Sterchi [ctr, com],
R-core [ctb, cph]
Maintainer: Tobias Schoch <tobias.schoch@fhnw.ch>
Diff between robsurvey versions 0.7-1 dated 2026-01-28 and 0.7-3 dated 2026-02-05
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/robsurvey-internal.R | 2 +- inst/doc/doc_comparison.pdf |binary inst/doc/doc_greg.pdf |binary inst/doc/doc_regression_covariance.pdf |binary src/regression_cov.c | 4 +++- 8 files changed, 18 insertions(+), 12 deletions(-)
Title: Estimation under not Missing at Random Nonresponse
Description: Methods to estimate finite-population parameters under nonresponse that is not missing at
random (NMAR, nonignorable). Incorporates auxiliary information and user-specified response models,
and supports independent samples and complex survey designs via objects from the 'survey' package.
Provides diagnostics and optional variance estimates. For methodological background see
Qin, Leung and Shao (2002) <doi:10.1198/016214502753479338> and Riddles, Kim and Im (2016) <doi:10.1093/jssam/smv047>.
Author: Maciej Beresewicz [aut, cre] ,
Igor Kolodziej [aut, ctb],
Mateusz Iwaniuk [aut, ctb]
Maintainer: Maciej Beresewicz <maciej.beresewicz@ue.poznan.pl>
Diff between NMAR versions 0.1.1 dated 2026-01-16 and 0.1.2 dated 2026-02-05
NMAR-0.1.1/NMAR/R/engines_exptilt_impl_calculate_fisher_information.R |only NMAR-0.1.1/NMAR/R/engines_exptilt_impl_estim_var.R |only NMAR-0.1.1/NMAR/man/el_core_helpers.Rd |only NMAR-0.1.1/NMAR/man/el_dataframe.Rd |only NMAR-0.1.1/NMAR/man/el_survey.Rd |only NMAR-0.1.1/NMAR/man/el_utils_aux.Rd |only NMAR-0.1.1/NMAR/man/nmar_engine_helpers.Rd |only NMAR-0.1.1/NMAR/man/nmar_result_s3_parent.Rd |only NMAR-0.1.1/NMAR/man/nmar_scaling_infra.Rd |only NMAR-0.1.1/NMAR/tests/testthat/test-bootstrap-improvements.R |only NMAR-0.1.2/NMAR/DESCRIPTION | 6 NMAR-0.1.2/NMAR/MD5 | 261 ++-- NMAR-0.1.2/NMAR/NEWS.md | 5 NMAR-0.1.2/NMAR/R/S3_nmar_engine_methods.R | 45 NMAR-0.1.2/NMAR/R/S3_nmar_result_constructors.R | 26 NMAR-0.1.2/NMAR/R/S3_nmar_result_methods.R | 97 - NMAR-0.1.2/NMAR/R/S3_nmar_result_print.R | 4 NMAR-0.1.2/NMAR/R/S3_nmar_result_utils.R | 12 NMAR-0.1.2/NMAR/R/S3_nmar_result_validator.R | 38 NMAR-0.1.2/NMAR/R/engines_el_engine.R | 150 +- NMAR-0.1.2/NMAR/R/engines_el_impl_auxiliaries.R | 10 NMAR-0.1.2/NMAR/R/engines_el_impl_constraints.R | 9 NMAR-0.1.2/NMAR/R/engines_el_impl_core.R | 50 NMAR-0.1.2/NMAR/R/engines_el_impl_core_helpers.R | 56 - NMAR-0.1.2/NMAR/R/engines_el_impl_dataframe.R | 42 NMAR-0.1.2/NMAR/R/engines_el_impl_el.R | 5 NMAR-0.1.2/NMAR/R/engines_el_impl_equations.R | 119 +- NMAR-0.1.2/NMAR/R/engines_el_impl_input.R | 70 - NMAR-0.1.2/NMAR/R/engines_el_impl_jacobian.R | 76 - NMAR-0.1.2/NMAR/R/engines_el_impl_result.R | 2 NMAR-0.1.2/NMAR/R/engines_el_impl_survey.R | 62 - NMAR-0.1.2/NMAR/R/engines_el_impl_utils_aux.R | 16 NMAR-0.1.2/NMAR/R/engines_el_impl_utils_math.R | 72 - NMAR-0.1.2/NMAR/R/engines_el_run_engine.R | 8 NMAR-0.1.2/NMAR/R/engines_el_s3.R | 5 NMAR-0.1.2/NMAR/R/engines_exptilt-nonparam_engine.R | 4 NMAR-0.1.2/NMAR/R/engines_exptilt-nonparam_impl_dataframe.R | 31 NMAR-0.1.2/NMAR/R/engines_exptilt-nonparam_impl_validate_df.R | 29 NMAR-0.1.2/NMAR/R/engines_exptilt_engine.R | 4 NMAR-0.1.2/NMAR/R/engines_exptilt_impl_constructors.R | 6 NMAR-0.1.2/NMAR/R/engines_exptilt_impl_dataframe.R | 29 NMAR-0.1.2/NMAR/R/engines_exptilt_impl_estim_mean.R | 2 NMAR-0.1.2/NMAR/R/engines_exptilt_impl_extract_formula.R | 11 NMAR-0.1.2/NMAR/R/engines_exptilt_impl_s_function.R | 16 NMAR-0.1.2/NMAR/R/engines_exptilt_impl_step_func.R | 9 NMAR-0.1.2/NMAR/R/engines_exptilt_impl_validate_df.R | 58 - NMAR-0.1.2/NMAR/R/nmar.R | 80 - NMAR-0.1.2/NMAR/R/shared_bootstrap.R | 524 +++++----- NMAR-0.1.2/NMAR/R/shared_families.R | 42 NMAR-0.1.2/NMAR/R/shared_numerics.R | 39 NMAR-0.1.2/NMAR/R/shared_scaling.R | 141 -- NMAR-0.1.2/NMAR/R/shared_verbose_printer.R | 21 NMAR-0.1.2/NMAR/R/shared_weights.R | 72 - NMAR-0.1.2/NMAR/R/validation_validate_data.R | 4 NMAR-0.1.2/NMAR/README.md | 26 NMAR-0.1.2/NMAR/inst/doc/tutorial_empirical_likelihood.R | 13 NMAR-0.1.2/NMAR/inst/doc/tutorial_empirical_likelihood.Rmd | 64 - NMAR-0.1.2/NMAR/inst/doc/tutorial_empirical_likelihood.html | 153 +- NMAR-0.1.2/NMAR/inst/doc/tutorial_exptilt.html | 26 NMAR-0.1.2/NMAR/man/apply_nmar_scaling.Rd | 6 NMAR-0.1.2/NMAR/man/bootstrap_variance.Rd | 110 -- NMAR-0.1.2/NMAR/man/bootstrap_variance.data.frame.Rd | 6 NMAR-0.1.2/NMAR/man/bootstrap_variance.default.Rd | 6 NMAR-0.1.2/NMAR/man/bootstrap_variance.survey.design.Rd | 59 - NMAR-0.1.2/NMAR/man/bootstrap_variance.svyrep.design.Rd |only NMAR-0.1.2/NMAR/man/coef.nmar_result.Rd | 2 NMAR-0.1.2/NMAR/man/coef.summary_nmar_result.Rd | 2 NMAR-0.1.2/NMAR/man/compute_weighted_stats.Rd | 4 NMAR-0.1.2/NMAR/man/confint.nmar_result.Rd | 4 NMAR-0.1.2/NMAR/man/confint.summary_nmar_result.Rd | 6 NMAR-0.1.2/NMAR/man/constraint_summaries.Rd | 4 NMAR-0.1.2/NMAR/man/el.Rd | 6 NMAR-0.1.2/NMAR/man/el.data.frame.Rd |only NMAR-0.1.2/NMAR/man/el.survey.design.Rd |only NMAR-0.1.2/NMAR/man/el_augment_strata_aux.Rd | 6 NMAR-0.1.2/NMAR/man/el_build_equation_system.Rd | 52 NMAR-0.1.2/NMAR/man/el_build_equation_system_survey.Rd | 33 NMAR-0.1.2/NMAR/man/el_build_jacobian.Rd | 29 NMAR-0.1.2/NMAR/man/el_build_jacobian_survey.Rd | 22 NMAR-0.1.2/NMAR/man/el_build_result.Rd | 4 NMAR-0.1.2/NMAR/man/el_build_start.Rd | 4 NMAR-0.1.2/NMAR/man/el_check_auxiliary_inconsistency_matrix.Rd | 5 NMAR-0.1.2/NMAR/man/el_compute_diagnostics.Rd | 4 NMAR-0.1.2/NMAR/man/el_compute_variance.Rd | 4 NMAR-0.1.2/NMAR/man/el_core_eta_state.Rd | 30 NMAR-0.1.2/NMAR/man/el_denominator.Rd | 4 NMAR-0.1.2/NMAR/man/el_engine.Rd | 97 - NMAR-0.1.2/NMAR/man/el_estimator_core.Rd | 32 NMAR-0.1.2/NMAR/man/el_extract_strata_factor.Rd | 10 NMAR-0.1.2/NMAR/man/el_lambda_W.Rd | 4 NMAR-0.1.2/NMAR/man/el_masses.Rd | 6 NMAR-0.1.2/NMAR/man/el_mean.Rd | 4 NMAR-0.1.2/NMAR/man/el_prepare_inputs.Rd | 50 NMAR-0.1.2/NMAR/man/el_prepare_nleqslv.Rd | 4 NMAR-0.1.2/NMAR/man/el_resolve_auxiliaries.Rd | 4 NMAR-0.1.2/NMAR/man/el_run_solver.Rd | 14 NMAR-0.1.2/NMAR/man/el_validate_design_spec.Rd | 4 NMAR-0.1.2/NMAR/man/enforce_nonneg_weights.Rd | 24 NMAR-0.1.2/NMAR/man/engine_config.Rd | 4 NMAR-0.1.2/NMAR/man/engine_name.Rd | 4 NMAR-0.1.2/NMAR/man/exptilt_engine.Rd | 4 NMAR-0.1.2/NMAR/man/exptilt_nonparam_engine.Rd | 4 NMAR-0.1.2/NMAR/man/fitted.nmar_result.Rd | 2 NMAR-0.1.2/NMAR/man/format.nmar_engine.Rd | 2 NMAR-0.1.2/NMAR/man/logit_family.Rd | 6 NMAR-0.1.2/NMAR/man/new_nmar_result.Rd | 25 NMAR-0.1.2/NMAR/man/nmar.Rd | 56 - NMAR-0.1.2/NMAR/man/nmar_format_call_line.Rd | 3 NMAR-0.1.2/NMAR/man/nmar_get_el_denom_floor.Rd | 7 NMAR-0.1.2/NMAR/man/nmar_get_numeric_settings.Rd | 12 NMAR-0.1.2/NMAR/man/prepare_nmar_scaling.Rd | 6 NMAR-0.1.2/NMAR/man/print.nmar_engine.Rd | 6 NMAR-0.1.2/NMAR/man/print.nmar_result_el.Rd | 2 NMAR-0.1.2/NMAR/man/probit_family.Rd | 6 NMAR-0.1.2/NMAR/man/run_engine.nmar_engine_el.Rd | 3 NMAR-0.1.2/NMAR/man/sanitize_nleqslv_control.Rd | 4 NMAR-0.1.2/NMAR/man/scale_aux_multipliers.Rd | 5 NMAR-0.1.2/NMAR/man/scale_coefficients.Rd | 9 NMAR-0.1.2/NMAR/man/shared_weighted_gram.Rd | 5 NMAR-0.1.2/NMAR/man/tidy.nmar_result.Rd | 4 NMAR-0.1.2/NMAR/man/trim_weights.Rd | 29 NMAR-0.1.2/NMAR/man/unscale_coefficients.Rd | 4 NMAR-0.1.2/NMAR/man/validate_and_apply_nmar_scaling.Rd | 7 NMAR-0.1.2/NMAR/man/validate_nleqslv_top.Rd | 4 NMAR-0.1.2/NMAR/man/validate_nmar_result.Rd | 32 NMAR-0.1.2/NMAR/man/vcov.nmar_result.Rd | 4 NMAR-0.1.2/NMAR/tests/testthat/test-bootstrap-advanced.R | 374 +++++-- NMAR-0.1.2/NMAR/tests/testthat/test-bootstrap.R | 281 +++++ NMAR-0.1.2/NMAR/tests/testthat/test-el-analytic-numeric-match.R | 2 NMAR-0.1.2/NMAR/tests/testthat/test-el-core-helpers.R | 2 NMAR-0.1.2/NMAR/tests/testthat/test-el-factors.R | 4 NMAR-0.1.2/NMAR/tests/testthat/test-el-jacobian-floor.R | 4 NMAR-0.1.2/NMAR/tests/testthat/test-el-jacobian-guard.R | 2 NMAR-0.1.2/NMAR/tests/testthat/test-el-response-extra-predictors.R | 2 NMAR-0.1.2/NMAR/tests/testthat/test-el-survey-jacobian-analytic-numeric-match.R | 2 NMAR-0.1.2/NMAR/tests/testthat/test-el-survey-ntotal-scaling.R | 3 NMAR-0.1.2/NMAR/tests/testthat/test-el-survey-weight-scale-invariance.R | 2 NMAR-0.1.2/NMAR/vignettes/tutorial_empirical_likelihood.Rmd | 64 - 138 files changed, 2169 insertions(+), 2147 deletions(-)
Title: Fitting and Forecasting Gegenbauer ARMA Time Series Models
Description: Methods for estimating univariate long memory-seasonal/cyclical
Gegenbauer time series processes. See for example (2022) <doi:10.1007/s00362-022-01290-3>.
Refer to the vignette for details of fitting these processes.
Author: Richard Hunt [aut, cre]
Maintainer: Richard Hunt <maint@huntemail.id.au>
Diff between garma versions 0.9.24 dated 2025-03-16 and 1.0.0 dated 2026-02-05
DESCRIPTION | 10 MD5 | 26 NAMESPACE | 2 NEWS.md | 4 R/forecast.R | 74 +- R/garma_main.R | 1138 ++++++++++++++++---------------- R/predict.R | 413 +++++------ R/print.R | 153 ++-- build/vignette.rds |binary inst/doc/introduction.html | 4 man/fitted.garma_forecast.Rd |only man/garma.Rd | 2 man/residuals.garma_forecast.Rd |only tests/testthat/_problems |only tests/testthat/_snaps/garma2.md | 18 tests/testthat/test-forecast_accuracy.R |only 16 files changed, 936 insertions(+), 908 deletions(-)
Title: "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et
al.
Description: Methods for Cluster analysis. Much extended the original from
Peter Rousseeuw, Anja Struyf and Mia Hubert,
based on Kaufman and Rousseeuw (1990) "Finding Groups in Data".
Author: Martin Maechler [aut, cre] ,
Peter Rousseeuw [aut] ,
Anja Struyf [aut] ,
Mia Hubert [aut] ,
Kurt Hornik [trl, ctb] , ORCID:
<https://orcid.org/0000-0003-4198-9911>),
Matthias Studer [ctb],
Pierre Roudier [ctb],
Juan Gonzalez [ctb],
Kamil Kozlowski [c [...truncated...]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between cluster versions 2.1.8.1 dated 2025-03-12 and 2.1.8.2 dated 2026-02-05
DESCRIPTION | 24 ++++++++++---------- MD5 | 14 +++++------ build/partial.rdb |binary inst/NEWS.Rd | 12 ++++++++++ tests/clara-NAs.R | 2 + tests/clara-NAs.Rout.save | 2 + tests/mona.R | 5 +++- tests/mona.Rout.save | 55 ++++++++++++++++++++++++---------------------- 8 files changed, 69 insertions(+), 45 deletions(-)
Title: Cryptographic Hash, Extendable-Output and Binary/Text Encoding
Functions
Description: Fast and memory-efficient streaming hash functions,
binary/text encoding and serialization. Hashes strings and raw vectors
directly. Stream hashes files which can be larger than memory, as
well as in-memory objects through R's serialization mechanism.
Implements the SHA-256, SHA-3 and 'Keccak' cryptographic hash
functions, SHAKE256 extendable-output function (XOF), 'SipHash'
pseudo-random function, base64 and base58 encoding, 'CBOR' and 'JSON'
serialization.
Author: Charlie Gao [aut, cre] ,
Posit Software, PBC [cph, fnd] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between secretbase versions 1.1.1 dated 2026-01-15 and 1.2.0 dated 2026-02-05
secretbase-1.1.1/secretbase/src/base.c |only secretbase-1.1.1/secretbase/src/base2.c |only secretbase-1.1.1/secretbase/src/base3.c |only secretbase-1.1.1/secretbase/src/secret.c |only secretbase-1.1.1/secretbase/src/secret2.c |only secretbase-1.1.1/secretbase/src/secret3.c |only secretbase-1.2.0/secretbase/DESCRIPTION | 23 +- secretbase-1.2.0/secretbase/MD5 | 33 ++-- secretbase-1.2.0/secretbase/NAMESPACE | 2 secretbase-1.2.0/secretbase/NEWS.md | 4 secretbase-1.2.0/secretbase/R/base.R | 83 ++++++++++ secretbase-1.2.0/secretbase/README.md | 32 +++- secretbase-1.2.0/secretbase/man/jsondec.Rd |only secretbase-1.2.0/secretbase/man/jsonenc.Rd |only secretbase-1.2.0/secretbase/man/secretbase-package.Rd | 4 secretbase-1.2.0/secretbase/src/base58.c |only secretbase-1.2.0/secretbase/src/base64.c |only secretbase-1.2.0/secretbase/src/cbor.c |only secretbase-1.2.0/secretbase/src/init.c | 2 secretbase-1.2.0/secretbase/src/json.c |only secretbase-1.2.0/secretbase/src/secret.h | 31 +++ secretbase-1.2.0/secretbase/src/sha256.c |only secretbase-1.2.0/secretbase/src/sha3.c |only secretbase-1.2.0/secretbase/src/siphash.c |only secretbase-1.2.0/secretbase/tests/tests.R | 142 ++++++++++++++++++ 25 files changed, 322 insertions(+), 34 deletions(-)
Title: Maximum-Likelihood Perfect Phylogeny Inference at Scale
Description: Fast maximum-likelihood phylogeny inference from noisy single-cell data using the 'ScisTree' algorithm by Yufeng Wu (2019) <doi:10.1093/bioinformatics/btz676>. 'scistreer' provides an 'R' interface and improves speed via 'Rcpp' and 'RcppParallel', making the method applicable to massive single-cell datasets (>10,000 cells).
Author: Teng Gao [cre, aut],
Evan Biederstedt [aut],
Peter Kharchenko [aut],
Yufeng Wu [aut]
Maintainer: Teng Gao <tgaoteng@gmail.com>
Diff between scistreer versions 1.2.0 dated 2023-06-15 and 1.2.1 dated 2026-02-05
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/vars.R | 2 +- README.md | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Spatial Absorbing Markov Chains
Description: Implements functions for working with absorbing Markov chains. The
implementation is based on the framework described in "Toward a unified
framework for connectivity that disentangles movement and mortality in space
and time" by Fletcher et al. (2019) <doi:10.1111/ele.13333>, which applies
them to spatial ecology. This framework incorporates both resistance and
absorption with spatial absorbing Markov chains (SAMC) to provide several
short-term and long-term predictions for metrics related to connectivity in
landscapes. Despite the ecological context of the framework, this package
can be used in any application of absorbing Markov chains.
Author: Andrew Marx [aut, cre, cph] ,
Robert Fletcher [ctb] ,
Miguel Acevedo [ctb] ,
Jorge Sefair [ctb] ,
Chao Wang [ctb] ,
Hughes Josie [ctb] ,
Barrett Griffin [ctb]
Maintainer: Andrew Marx <ajm.rpackages@gmail.com>
Diff between samc versions 4.0.0 dated 2024-10-30 and 4.1.0 dated 2026-02-05
DESCRIPTION | 21 - MD5 | 72 +-- NEWS.md | 2 R/absorption.R | 106 ++--- R/check.R | 230 ++++++------ R/cond_passage.R | 203 ++++++---- R/dispersal.R | 421 +++++++++++----------- R/distribution.R | 314 ++++++++-------- R/generics.R | 124 +++--- R/internal-classes.R | 30 - R/internal-data.R | 425 +++++++++++++--------- R/internal-functions.R | 893 ++++++++++++++++++++++++------------------------ R/internal-utils.R | 4 R/internal-validation.R | 370 +++++++++---------- R/locate.R | 56 +-- R/location-class.R | 2 R/map.R | 97 ++--- R/mortality.R | 551 ++++++++++++++--------------- R/pairwise.R | 50 +- R/rasterize.R | 38 +- R/samc-class.R | 52 +- R/samc.R | 511 +++++++++++++-------------- R/survival.R | 90 ++-- R/visitation.R | 726 +++++++++++++++++++-------------------- R/zzz.R | 6 build/vignette.rds |binary inst/doc/overview.R | 18 inst/doc/overview.html | 28 - man/absorption.Rd | 10 man/cond_passage.Rd | 8 man/dispersal.Rd | 20 - man/distribution.Rd | 14 man/mortality.Rd | 24 - man/samc.Rd | 16 man/survival.Rd | 8 man/visitation.Rd | 28 - man/visitation_net.Rd | 4 37 files changed, 2817 insertions(+), 2755 deletions(-)
Title: Basic Robust Statistics
Description: "Essential" Robust Statistics.
Tools allowing to analyze data with robust methods. This includes
regression methodology including model selections and multivariate
statistics where we strive to cover the book "Robust Statistics,
Theory and Methods" by 'Maronna, Martin and Yohai'; Wiley 2006.
Author: Martin Maechler [aut, cre] ,
Peter Rousseeuw [ctb] ,
Christophe Croux [ctb] ,
Valentin Todorov [aut] ,
Andreas Ruckstuhl [aut] ,
Matias Salibian-Barrera [aut] ,
Tobias Verbeke [ctb, fnd] ,
Manuel Koller [aut] ,
Eduardo L. T. Conceicao [aut] ,
Maria A [...truncated...]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between robustbase versions 0.99-6 dated 2025-09-04 and 0.99-7 dated 2026-02-05
DESCRIPTION | 12 +- MD5 | 32 ++--- R/MTestimador2.R | 2 R/glmrob.R | 24 ++-- R/glmrobMqle.R | 2 R/lmrob.MM.R | 1 R/lmrob.R | 22 ++- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 13 ++ inst/doc/fastMcd-kmini.pdf |binary inst/doc/lmrob_simulation.pdf |binary inst/doc/psi_functions.pdf |binary man/glmrob.Rd | 4 man/weights.lmrob.Rd | 15 ++ tests/NAcoef.R | 45 +++++-- tests/NAcoef.Rout.save | 238 +++++++++++++++++++++++++++--------------- 17 files changed, 263 insertions(+), 147 deletions(-)
Title: Non-Linear Mixed Effects Model Based on the Gamma Function Form
Description: Identifies biomarkers that exhibit differential response dynamics by time across groups and estimates kinetic properties of biomarkers.
Author: Hongting Chen [aut, cre],
Liming Liang [aut]
Maintainer: Hongting Chen <hongtingchen@berkeley.edu>
Diff between gammaFuncModel versions 5.0 dated 2025-06-20 and 6.0 dated 2026-02-05
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/gammaFuncModel.R | 10 +++------- man/diffGrpResponse_parallel.Rd | 4 +--- man/grpResp2Time_parallel.Rd | 4 +--- man/pk_calculation.Rd | 2 +- 6 files changed, 15 insertions(+), 23 deletions(-)
More information about gammaFuncModel at CRAN
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Title: Data-Limited Methods Toolkit
Description: A collection of data-limited management procedures that can be evaluated
with management strategy evaluation with the 'MSEtool' package, or applied to
fishery data to provide management recommendations.
Author: Tom Carruthers [aut],
Quang Huynh [aut],
Adrian Hordyk [aut, cre],
M. Bryan [ctb],
HF. Geremont [ctb],
C. Grandin [ctb],
W. Harford [ctb],
Q. Huynh [ctb],
C. Walters [ctb]
Maintainer: Adrian Hordyk <adrian@bluematterscience.com>
Diff between DLMtool versions 6.0.6 dated 2022-06-20 and 6.0.7 dated 2026-02-05
DLMtool-6.0.6/DLMtool/man/FilterSmooth.Rd |only DLMtool-6.0.6/DLMtool/man/LBSPR.Rd |only DLMtool-6.0.6/DLMtool/man/LBSPR_.Rd |only DLMtool-6.0.6/DLMtool/src/Makevars |only DLMtool-6.0.6/DLMtool/src/Makevars.win |only DLMtool-6.0.6/DLMtool/src/TMB |only DLMtool-6.0.7/DLMtool/DESCRIPTION | 13 DLMtool-6.0.7/DLMtool/MD5 | 130 +-- DLMtool-6.0.7/DLMtool/NAMESPACE | 6 DLMtool-6.0.7/DLMtool/NEWS.md | 186 ----- DLMtool-6.0.7/DLMtool/R/DLMtool-package.R | 2 DLMtool-6.0.7/DLMtool/R/MPs_Input.R | 1054 +++++++++++++++--------------- DLMtool-6.0.7/DLMtool/R/RcppExports.R | 2 DLMtool-6.0.7/DLMtool/man/BK.Rd | 10 DLMtool-6.0.7/DLMtool/man/CC.Rd | 54 - DLMtool-6.0.7/DLMtool/man/CC1.Rd | 14 DLMtool-6.0.7/DLMtool/man/CompSRA.Rd | 6 DLMtool-6.0.7/DLMtool/man/CompSRA_.Rd | 44 - DLMtool-6.0.7/DLMtool/man/DBSRA.Rd | 8 DLMtool-6.0.7/DLMtool/man/DBSRA_.Rd | 48 - DLMtool-6.0.7/DLMtool/man/DBSRAopt.Rd | 62 - DLMtool-6.0.7/DLMtool/man/DCAC.Rd | 34 DLMtool-6.0.7/DLMtool/man/DCAC_.Rd | 52 - DLMtool-6.0.7/DLMtool/man/DD.Rd | 6 DLMtool-6.0.7/DLMtool/man/DD_.Rd | 44 - DLMtool-6.0.7/DLMtool/man/DD_R.Rd | 94 +- DLMtool-6.0.7/DLMtool/man/DDe.Rd | 10 DLMtool-6.0.7/DLMtool/man/DTe40.Rd | 6 DLMtool-6.0.7/DLMtool/man/EtargetLopt.Rd | 2 DLMtool-6.0.7/DLMtool/man/Fdem.Rd | 8 DLMtool-6.0.7/DLMtool/man/Fdem_.Rd | 42 - DLMtool-6.0.7/DLMtool/man/Fratio.Rd | 12 DLMtool-6.0.7/DLMtool/man/Fratio_.Rd | 42 - DLMtool-6.0.7/DLMtool/man/GB_slope.Rd | 2 DLMtool-6.0.7/DLMtool/man/GB_target.Rd | 2 DLMtool-6.0.7/DLMtool/man/Gcontrol.Rd | 2 DLMtool-6.0.7/DLMtool/man/ICI.Rd | 8 DLMtool-6.0.7/DLMtool/man/IT5.Rd | 6 DLMtool-6.0.7/DLMtool/man/ITM.Rd | 2 DLMtool-6.0.7/DLMtool/man/IT_.Rd | 56 - DLMtool-6.0.7/DLMtool/man/ITe5.Rd | 6 DLMtool-6.0.7/DLMtool/man/Iratio.Rd | 2 DLMtool-6.0.7/DLMtool/man/Islope1.Rd | 12 DLMtool-6.0.7/DLMtool/man/Islope_.Rd | 52 - DLMtool-6.0.7/DLMtool/man/Itarget1.Rd | 10 DLMtool-6.0.7/DLMtool/man/ItargetE1.Rd | 14 DLMtool-6.0.7/DLMtool/man/Itarget_.Rd | 64 - DLMtool-6.0.7/DLMtool/man/Itargeteff_.Rd | 58 - DLMtool-6.0.7/DLMtool/man/Lratio_BHI.Rd | 8 DLMtool-6.0.7/DLMtool/man/LstepCC1.Rd | 10 DLMtool-6.0.7/DLMtool/man/LstepCE1.Rd | 6 DLMtool-6.0.7/DLMtool/man/Ltarget1.Rd | 12 DLMtool-6.0.7/DLMtool/man/LtargetE1.Rd | 6 DLMtool-6.0.7/DLMtool/man/MCD.Rd | 6 DLMtool-6.0.7/DLMtool/man/MRreal.Rd | 6 DLMtool-6.0.7/DLMtool/man/Rcontrol.Rd | 8 DLMtool-6.0.7/DLMtool/man/SBT1.Rd | 6 DLMtool-6.0.7/DLMtool/man/SPMSY.Rd | 9 DLMtool-6.0.7/DLMtool/man/SPSRA.Rd | 8 DLMtool-6.0.7/DLMtool/man/SPSRA_.Rd | 84 +- DLMtool-6.0.7/DLMtool/man/YPR.Rd | 10 DLMtool-6.0.7/DLMtool/man/YPR_.Rd | 96 +- DLMtool-6.0.7/DLMtool/man/curE.Rd | 6 DLMtool-6.0.7/DLMtool/man/demographic2.Rd | 86 +- DLMtool-6.0.7/DLMtool/man/getr.Rd | 62 - DLMtool-6.0.7/DLMtool/man/iVB.Rd | 42 - DLMtool-6.0.7/DLMtool/man/matlenlim.Rd | 10 DLMtool-6.0.7/DLMtool/src/RcppExports.cpp | 1 68 files changed, 1306 insertions(+), 1463 deletions(-)
Title: Coarsened Mixtures of Hierarchical Skew Kernels
Description: Bayesian fit of a Dirichlet Process Mixture with hierarchical multivariate skew normal kernels and coarsened posteriors. For more information, see Gorsky, Chan and Ma (2024) <doi:10.1214/22-BA1356>.
Author: S. Gorsky [aut, cre],
C. Chan [ctb],
L. Ma [ctb]
Maintainer: S. Gorsky <sgorsky@umass.edu>
Diff between COMIX versions 1.0.1 dated 2025-11-11 and 1.0.2 dated 2026-02-05
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/tidy_chain.R | 8 +++----- build/vignette.rds |binary 4 files changed, 9 insertions(+), 11 deletions(-)
Title: High Performance Container Data Types
Description: Provides high performance container data types such
as queues, stacks, deques, dicts and ordered dicts. Benchmarks
<https://randy3k.github.io/collections/articles/benchmark.html> have
shown that these containers are asymptotically more efficient than
those offered by other packages.
Author: Randy Lai [aut, cre],
Andrea Mazzoleni [cph] ,
Yann Collet [cph]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between collections versions 0.3.10 dated 2026-01-21 and 0.3.11 dated 2026-02-05
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/xxh.c | 49 +++++++++++++++++++++++++++++++++++++++---------- 3 files changed, 45 insertions(+), 16 deletions(-)
Title: Extra Analysis Results Data Utilities
Description: Create extra Analysis Results Data (ARD) summary objects.
The package supplements the simple ARD functions from the 'cards'
package, exporting functions to put statistical results in the ARD
format. These objects are used and re-used to construct summary
tables, visualizations, and written reports.
Author: Daniel D. Sjoberg [aut, cre] ,
Abinaya Yogasekaram [aut],
Emily de la Rua [aut],
Malcolm Barrett [ctb] ,
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between cardx versions 0.3.1 dated 2025-12-04 and 0.3.2 dated 2026-02-05
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/ard_tabulate.survey.design.R | 2 +- tests/testthat/test-ard_tabulate.survey.design.R | 1 + 5 files changed, 14 insertions(+), 9 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-05 3.2.0
2021-03-09 3.1.9
2020-09-11 3.1.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-11-19 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-01-20 1.0.0
2025-07-19 0.1.0