Title: High-Level Plotting Built Upon 'ggplot2' and Other Plotting
Packages
Description: Provides high-level API and a wide range of options to create stunning, publication-quality plots effortlessly.
It is built upon 'ggplot2' and other plotting packages, and is designed to be easy to use and to work seamlessly with 'ggplot2' objects.
It is particularly useful for creating complex plots with multiple layers, facets, and annotations.
It also provides a set of functions to create plots for specific types of data, such as Venn diagrams, alluvial diagrams, and phylogenetic trees.
The package is designed to be flexible and customizable, and to work well with the 'ggplot2' ecosystem.
The API can be found at <https://pwwang.github.io/plotthis/reference/index.html>.
Author: Panwen Wang [aut, cre]
Maintainer: Panwen Wang <pwwang@pwwang.com>
Diff between plotthis versions 0.9.3 dated 2026-01-09 and 0.10.0 dated 2026-02-06
DESCRIPTION | 6 MD5 | 159 +++++++------ NEWS.md |only R/areaplot.R | 127 ++++++++--- R/barplot.R | 483 +++++++++++++++++++++++++++++++++--------- R/boxviolinplot.R | 147 ++++++++++-- R/chordplot.R | 48 +++- R/clustreeplot.R | 1 R/common_args.R | 27 ++ R/corplot.R | 2 R/densityplot.R | 135 +++++++++-- R/dimplot.R | 127 ++++++++--- R/dotplot.R | 63 ++++- R/enrich.R | 2 R/heatmap.R | 62 ++--- R/jitterplot.R | 137 +++++++++-- R/lineplot.R | 163 ++++++++++---- R/manhattanplot.R | 1 R/network.R | 6 R/piechart.R | 140 +++++++----- R/qqplot.R | 1 R/radarplot.R | 174 +++++++++++---- R/rarefractionplot.R | 6 R/ringplot.R | 131 ++++++++--- R/roccurve.R | 1 R/sankeyplot.R | 2 R/scatterplot.R | 1 R/theming.R | 87 +++++-- R/trendplot.R | 116 +++++++--- R/upsetplot.R | 1 R/utils.R | 140 +++++++++++- R/velocityplot.R | 74 +++++- R/venndiagram.R | 1 R/volcanoplot.R | 1 R/wordcloudplot.R | 1 man/AreaPlot.Rd | 44 +++ man/AreaPlotAtomic.Rd | 23 +- man/BarPlotAtomic.Rd | 36 ++- man/BarPlotGrouped.Rd | 23 +- man/BarPlotSingle.Rd | 35 ++- man/BoxViolinPlot-internal.Rd | 23 +- man/BoxViolinPlotAtomic.Rd | 22 + man/ChordPlotAtomic.Rd | 23 ++ man/DensityHistoPlotAtomic.Rd | 23 ++ man/DimPlotAtomic.Rd | 23 ++ man/DotPlotAtomic.Rd | 23 +- man/Heatmap.Rd | 18 + man/HeatmapAtomic.Rd | 18 + man/JitterPlotAtomic.Rd | 26 ++ man/LinePlot.Rd | 46 +++- man/LinePlotAtomic.Rd | 23 +- man/LinePlotGrouped.Rd | 23 +- man/LinePlotSingle.Rd | 23 +- man/PieChart.Rd | 50 +++- man/PieChartAtomic.Rd | 30 ++ man/RadarPlotAtomic.Rd | 23 ++ man/RidgePlot.Rd | 35 ++- man/RidgePlotAtomic.Rd | 22 + man/RingPlot.Rd | 45 +++ man/RingPlotAtomic.Rd | 27 ++ man/SankeyPlotAtomic.Rd | 11 man/SplitBarPlotAtomic.Rd | 29 ++ man/TrendPlot.Rd | 39 +++ man/TrendPlotAtomic.Rd | 23 ++ man/VelocityPlot.Rd | 34 ++ man/barplot.Rd | 134 ++++++++++- man/bg_layer.Rd | 6 man/boxviolinplot.Rd | 62 +++++ man/check_keep_empty.Rd |only man/check_keep_na.Rd |only man/chordplot.Rd | 25 ++ man/common_args.Rd | 22 + man/densityhistoplot.Rd | 35 ++- man/dimplot.Rd | 33 ++ man/dotplot.Rd | 30 ++ man/jitterplot.Rd | 52 +++- man/process_heatmap_data.Rd | 9 man/process_keep_na_empty.Rd |only man/radarplot.Rd | 44 +++ man/sankeyplot.Rd | 12 - man/validate_common_args.Rd | 25 +- tests/testthat/test-theming.R | 258 ++++++++++++++++++++++ tests/testthat/test_utils.R |only 83 files changed, 3416 insertions(+), 747 deletions(-)
Title: Patient-Reported Outcome Data Analysis with Stan
Description: Algorithms and subroutines for patient-reported outcome data analysis.
Author: Bin Wang [aut, cre]
Maintainer: Bin Wang <bwang831@gmail.com>
Diff between prome versions 3.0.1.5 dated 2025-11-08 and 3.1.0.1 dated 2026-02-06
DESCRIPTION | 6 +-- MD5 | 11 +++-- NAMESPACE | 1 R/blindingCPE.R | 98 ++++++++++++++++++++++++++++++++++++++++++++--------- R/blindingTEST.R | 85 +++++++++++++++++++++++++++++++++++++++++++++ man/blindingBI.Rd |only man/blindingcpe.Rd | 3 + 7 files changed, 179 insertions(+), 25 deletions(-)
Title: Bindings for 'Open Source Routing Machine'
Description: Install and control 'Open Source Routing Machine' ('OSRM')
backend executables to prepare routing data and run/stop a local
'OSRM' server. For computations with the running server use the 'osrm'
R package (<https://cran.r-project.org/package=osrm>).
Author: Egor Kotov [aut, cre, cph]
Maintainer: Egor Kotov <kotov.egor@gmail.com>
Diff between osrm.backend versions 0.1.1 dated 2025-12-06 and 0.2.0 dated 2026-02-06
DESCRIPTION | 6 MD5 | 16 NEWS.md | 13 R/osrm_server_registry.R | 3 R/osrm_start_server.R | 237 +++++++++---- R/osrm_stop_server.R | 4 man/osrm_servers.Rd | 2 man/osrm_start_server.Rd | 36 +- tests/testthat/test-osrm_server.R | 678 +++++++++++++++++++++++++++++++++++++- 9 files changed, 881 insertions(+), 114 deletions(-)
Title: Rename and Encode Data Frames Using External Crosswalk Files
Description: A pair of functions for renaming and encoding data frames
using external crosswalk files. It is especially useful when
constructing master data sets from multiple smaller data
sets that do not name or encode variables consistently
across files. Based on similar commands in 'Stata'.
Author: Benjamin Skinner [aut, cre]
Maintainer: Benjamin Skinner <ben@btskinner.io>
Diff between crosswalkr versions 0.3.0 dated 2025-04-09 and 0.4.0 dated 2026-02-06
DESCRIPTION | 9 ++-- MD5 | 20 ++++----- build/vignette.rds |binary inst/doc/collapse.R | 11 ++--- inst/doc/collapse.Rmd | 11 ++--- inst/doc/collapse.html | 27 ++++++------ inst/doc/crosswalkr.R | 49 +++++++++++++---------- inst/doc/crosswalkr.Rmd | 49 +++++++++++++---------- inst/doc/crosswalkr.html | 98 +++++++++++++++++++++-------------------------- vignettes/collapse.Rmd | 11 ++--- vignettes/crosswalkr.Rmd | 49 +++++++++++++---------- 11 files changed, 176 insertions(+), 158 deletions(-)
Title: R Commander Plug-in for Risk Demonstration
Description: R Commander plug-in to demonstrate various actuarial and financial risks. It includes valuation of bonds and stocks, portfolio optimization, classical ruin theory, demography and epidemic.
Author: Arto Luoma [aut, cre]
Maintainer: Arto Luoma <arto.luoma@wippies.com>
Diff between RcmdrPlugin.RiskDemo versions 3.2 dated 2024-02-06 and 3.3 dated 2026-02-06
ChangeLog | 4 ++++ DESCRIPTION | 16 ++++++++++------ MD5 | 14 +++++++------- NAMESPACE | 4 ++-- R/drawBars.R | 1 + R/drawIncidence.R | 2 ++ R/drawPositiveRate.R | 2 ++ R/drawTests.R | 2 ++ 8 files changed, 30 insertions(+), 15 deletions(-)
More information about RcmdrPlugin.RiskDemo at CRAN
Permanent link
More information about indonesiaFootballScoutR at CRAN
Permanent link
More information about BayesianHybridDesign at CRAN
Permanent link
Title: Variational Autoencoders for Heterogeneous Tabular Data
Description: Build and train a variational autoencoder (VAE) for mixed-type
tabular data (continuous, binary, categorical).
Models are implemented using 'TensorFlow' and 'Keras' via the 'reticulate'
interface, enabling reproducible VAE training for heterogeneous tabular
datasets.
Author: Sarah Milligan [aut, cre]
Maintainer: Sarah Milligan <slm1999@bu.edu>
Diff between autotab versions 0.1.1 dated 2025-11-24 and 0.1.2 dated 2026-02-06
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/extracting_distribution.R | 2 +- R/training.R | 25 +++++++++++++------------ README.md | 17 ++++++----------- man/feat_reorder.Rd | 2 +- 6 files changed, 29 insertions(+), 33 deletions(-)
Title: Download and Explore Datasets from UCSC Xena Data Hubs
Description: Download and explore datasets from UCSC Xena data hubs, which
are a collection of UCSC-hosted public databases such as TCGA, ICGC,
TARGET, GTEx, CCLE, and others. Databases are normalized so they can
be combined, linked, filtered, explored and downloaded.
Author: Shixiang Wang [aut, cre] ,
Xue-Song Liu [aut] ,
Martin Morgan [ctb],
Christine Stawitz [rev] ,
Carl Ganz [rev]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between UCSCXenaTools versions 1.6.1 dated 2025-08-21 and 1.7.0 dated 2026-02-06
DESCRIPTION | 8 +- MD5 | 30 ++++---- NEWS.md | 10 ++ R/XenaHub-class.R | 29 -------- R/XenaQuery.R | 22 ------ R/XenaQueryProbeMap.R | 2 R/fetch.R | 36 ---------- README.md | 3 build/vignette.rds |binary data/XenaData.rda |binary inst/doc/USCSXenaTools.R | 22 +++--- inst/doc/USCSXenaTools.html | 126 ++++++++++++++++++++++++++---------- inst/queries/datasetGeneProbeAvg.xq | 5 + man/XenaHub.Rd | 5 - man/XenaScan.Rd | 2 tests/testthat/test-full-tests.R | 3 16 files changed, 143 insertions(+), 160 deletions(-)
Title: Input/Output 'SomaScan' Data
Description: Load and export 'SomaScan' data via the
'SomaLogic Operating Co., Inc.' structured text file
called an ADAT ('*.adat'). For file format see
<https://github.com/SomaLogic/SomaLogic-Data/blob/main/README.md>.
The package also exports auxiliary functions for
manipulating, wrangling, and extracting relevant
information from an ADAT object once in memory.
Author: Stu Field [aut] ,
Caleb Scheidel [cre],
SomaLogic Operating Co., Inc. [cph, fnd]
Maintainer: Caleb Scheidel <calebjscheidel@gmail.com>
Diff between SomaDataIO versions 6.4.0 dated 2025-08-29 and 6.5.0 dated 2026-02-06
DESCRIPTION | 16 ++++----- LICENSE | 4 +- MD5 | 52 ++++++++++++++++---------------- NEWS.md | 26 ++++++++++++++++ R/adat2eSet.R | 4 +- R/data.R | 2 - R/preProcessAdat.R | 25 +++++++++++---- R/read-annotations.R | 14 ++++---- R/zzz.R | 4 +- README.md | 34 ++++++++++---------- inst/cli/merge/merge_clin.R | 2 - inst/doc/SomaDataIO.Rmd | 6 +-- inst/doc/SomaDataIO.html | 10 +++--- man/SeqId.Rd | 2 - man/SomaDataIO-package.Rd | 4 +- man/SomaScanObjects.Rd | 2 - man/adat2eSet.Rd | 2 - man/addAttributes.Rd | 2 - man/pivotExpressionSet.Rd | 2 - man/preProcessAdat.Rd | 9 ++++- man/read_annotations.Rd | 2 - tests/testthat/_snaps/preProcessAdat.md | 4 -- tests/testthat/test-adat2eSet.R | 4 +- tests/testthat/test-dplyr-verbs.R | 28 ++++++++--------- tests/testthat/test-preProcessAdat.R | 14 ++++++++ tests/testthat/test-read-annotations.R | 4 +- vignettes/SomaDataIO.Rmd | 6 +-- 27 files changed, 170 insertions(+), 114 deletions(-)
Title: Classification with Parallel Factor Analysis
Description: Classification using Richard A. Harshman's Parallel Factor Analysis-1 (Parafac) model or Parallel Factor Analysis-2 (Parafac2) model fit to a three-way or four-way data array. See Harshman and Lundy (1994): <doi:10.1016/0167-9473(94)90132-5>. Uses component weights from one mode of a Parafac or Parafac2 model as features to tune parameters for one or more classification methods via a k-fold cross-validation procedure. Allows for constraints on different tensor modes. Supports penalized logistic regression, support vector machine, random forest, feed-forward neural network, regularized discriminant analysis, and gradient boosting machine. Supports binary and multiclass classification. Predicts class labels or class probabilities and calculates multiple classification performance measures. Implements parallel computing via the 'parallel', 'doParallel', and 'doRNG' packages.
Author: Matthew A. Asisgress [aut, cre]
Maintainer: Matthew A. Asisgress <mattgress@protonmail.ch>
Diff between cpfa versions 1.2-5 dated 2026-01-14 and 1.2-6 dated 2026-02-06
ChangeLog | 24 +++++++++++++++++++++ DESCRIPTION | 8 +++---- MD5 | 26 +++++++++++----------- R/cpfa.R | 13 ++++++----- R/kcv.gbm.R | 7 ++---- R/plotcpfa.R | 19 ++++++++++++++-- R/predict.tunecpfa.R | 30 +++++++++++++++++++------- R/tunecpfa.R | 58 +++++++++++++++++++++++++++++++++++++++++---------- inst/doc/cpfa.Rmd | 22 +++++++++---------- inst/doc/cpfa.pdf |binary man/cpfa.Rd | 9 +++++++ man/plotcpfa.Rd | 9 ++++++- man/tunecpfa.Rd | 22 ++++++++++++++++++- vignettes/cpfa.Rmd | 22 +++++++++---------- 14 files changed, 195 insertions(+), 74 deletions(-)
Title: A Template for Creating Reproducible 'shiny' Applications
Description: Create a skeleton 'shiny' application with create_template() that is
reproducible, can be saved and meets academic standards for attribution.
Forked from 'wallace'. Code is split into modules that are loaded and linked
together automatically and each call one function. Guidance pages explain
modules to users and flexible logging informs them of any errors. Options
enable asynchronous operations, viewing of source code, interactive maps and
data tables. Use to create complex analytical applications, following best
practices in open science and software development. Includes functions for
automating repetitive development tasks and an example application at
run_shinyscholar() that requires
install.packages("shinyscholar", dependencies = TRUE). A guide to developing
applications can be found on the package website.
Author: Simon E. H. Smart [aut, cre, cph],
Tim Lucas [aut] ,
Jamie M. Kass [ctb],
Gonzalo E. Pinilla-Buitrago [ctb],
Andrea Paz [ctb],
Bethany A. Johnson [ctb],
Valentina Grisales-Betancur [ctb],
Dean Attali [ctb],
Matthew E. Aiello-Lammens [ctb],
Cory Merow [...truncated...]
Maintainer: Simon E. H. Smart <simon.smart@cantab.net>
Diff between shinyscholar versions 0.4.3 dated 2025-09-05 and 0.4.4 dated 2026-02-06
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 4 ++++ README.md | 3 ++- inst/shiny/Rmd/text_intro_tab.Rmd | 2 +- inst/shiny/Rmd/userReport_intro.Rmd | 2 +- tests/testthat/test-helpers.R | 4 ++++ 7 files changed, 22 insertions(+), 13 deletions(-)
Title: Characterise Tables of an OMOP Common Data Model Instance
Description: Summarises key information in data mapped to the Observational
Medical Outcomes Partnership (OMOP) common data model. Assess suitability to
perform specific epidemiological studies and explore the different domains
to obtain feasibility counts and trends.
Author: Marta Alcalde-Herraiz [aut] ,
Kim Lopez-Guell [aut] ,
Elin Rowlands [aut] ,
Cecilia Campanile [aut, cre] ,
Edward Burn [aut] ,
Marti Catala [aut]
Maintainer: Cecilia Campanile <cecilia.campanile@ndorms.ox.ac.uk>
Diff between OmopSketch versions 1.0.0 dated 2025-11-19 and 1.0.1 dated 2026-02-06
OmopSketch-1.0.0/OmopSketch/inst/doc/missing_data.R |only OmopSketch-1.0.0/OmopSketch/inst/doc/missing_data.Rmd |only OmopSketch-1.0.0/OmopSketch/inst/doc/missing_data.html |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_clinical_tables_records.R |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_clinical_tables_records.Rmd |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_clinical_tables_records.html |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_concept_id_counts.R |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_concept_id_counts.Rmd |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_concept_id_counts.html |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_observation_period.R |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_observation_period.Rmd |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_observation_period.html |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_person.R |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_person.Rmd |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_person.html |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_trend.R |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_trend.Rmd |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_trend.html |only OmopSketch-1.0.0/OmopSketch/vignettes/missing_data.Rmd |only OmopSketch-1.0.0/OmopSketch/vignettes/summarise_clinical_tables_records.Rmd |only OmopSketch-1.0.0/OmopSketch/vignettes/summarise_concept_id_counts.Rmd |only OmopSketch-1.0.0/OmopSketch/vignettes/summarise_observation_period.Rmd |only OmopSketch-1.0.0/OmopSketch/vignettes/summarise_person.Rmd |only OmopSketch-1.0.0/OmopSketch/vignettes/summarise_trend.Rmd |only OmopSketch-1.0.1/OmopSketch/DESCRIPTION | 8 OmopSketch-1.0.1/OmopSketch/MD5 | 125 ++---- OmopSketch-1.0.1/OmopSketch/NEWS.md | 17 OmopSketch-1.0.1/OmopSketch/R/checks.R | 82 --- OmopSketch-1.0.1/OmopSketch/R/databaseCharacteristics.R | 6 OmopSketch-1.0.1/OmopSketch/R/documentationHelper.R | 8 OmopSketch-1.0.1/OmopSketch/R/mockOmopSketch.R | 33 - OmopSketch-1.0.1/OmopSketch/R/plotObservationPeriod.R | 52 -- OmopSketch-1.0.1/OmopSketch/R/plotPerson.R | 9 OmopSketch-1.0.1/OmopSketch/R/plotTrend.R | 27 - OmopSketch-1.0.1/OmopSketch/R/shinyCharacteristics.R | 6 OmopSketch-1.0.1/OmopSketch/R/sqlTranslations.R | 2 OmopSketch-1.0.1/OmopSketch/R/summariseClinicalRecords.R | 207 ++++------ OmopSketch-1.0.1/OmopSketch/R/summariseConceptIdCounts.R | 4 OmopSketch-1.0.1/OmopSketch/R/summariseInternal.R | 23 - OmopSketch-1.0.1/OmopSketch/R/summariseMissingData.R | 7 OmopSketch-1.0.1/OmopSketch/R/summariseOmopSnapshot.R | 6 OmopSketch-1.0.1/OmopSketch/R/tableClinicalRecords.R | 12 OmopSketch-1.0.1/OmopSketch/R/tableConceptIdCounts.R | 8 OmopSketch-1.0.1/OmopSketch/R/tableMissingData.R | 12 OmopSketch-1.0.1/OmopSketch/R/tableObservationPeriod.R | 12 OmopSketch-1.0.1/OmopSketch/R/tableOmopSnapshot.R | 29 - OmopSketch-1.0.1/OmopSketch/R/tablePerson.R | 50 +- OmopSketch-1.0.1/OmopSketch/R/tableTopConceptCounts.R | 14 OmopSketch-1.0.1/OmopSketch/R/tableTrend.R | 12 OmopSketch-1.0.1/OmopSketch/R/utilities.R | 53 +- OmopSketch-1.0.1/OmopSketch/build/vignette.rds |binary OmopSketch-1.0.1/OmopSketch/inst/brand/scarlet.yml | 162 +++---- OmopSketch-1.0.1/OmopSketch/man/databaseCharacteristics.Rd | 2 OmopSketch-1.0.1/OmopSketch/man/plotObservationPeriod.Rd | 9 OmopSketch-1.0.1/OmopSketch/man/plotTrend.Rd | 15 OmopSketch-1.0.1/OmopSketch/man/shinyCharacteristics.Rd | 2 OmopSketch-1.0.1/OmopSketch/man/style-table.Rd | 8 OmopSketch-1.0.1/OmopSketch/man/tableClinicalRecords.Rd | 17 OmopSketch-1.0.1/OmopSketch/man/tableMissingData.Rd | 17 OmopSketch-1.0.1/OmopSketch/man/tableObservationPeriod.Rd | 17 OmopSketch-1.0.1/OmopSketch/man/tableOmopSnapshot.Rd | 17 OmopSketch-1.0.1/OmopSketch/man/tablePerson.Rd | 26 + OmopSketch-1.0.1/OmopSketch/man/tableTrend.Rd | 17 OmopSketch-1.0.1/OmopSketch/tests/testthat/test-databaseCharacteristics.R | 2 OmopSketch-1.0.1/OmopSketch/tests/testthat/test-deprecated.R |only OmopSketch-1.0.1/OmopSketch/tests/testthat/test-sqlTranslations.R | 12 OmopSketch-1.0.1/OmopSketch/tests/testthat/test-summariseClinicalRecords.R | 11 OmopSketch-1.0.1/OmopSketch/tests/testthat/test-summariseConceptIdCounts.R | 12 OmopSketch-1.0.1/OmopSketch/tests/testthat/test-summariseMissingData.R | 2 OmopSketch-1.0.1/OmopSketch/tests/testthat/test-summariseObservationPeriod.R | 7 OmopSketch-1.0.1/OmopSketch/tests/testthat/test-summariseOmopSnapshot.R | 1 OmopSketch-1.0.1/OmopSketch/tests/testthat/test-summarisePerson.R | 2 OmopSketch-1.0.1/OmopSketch/tests/testthat/test-summariseTrend.R | 17 OmopSketch-1.0.1/OmopSketch/vignettes/articles |only 74 files changed, 615 insertions(+), 584 deletions(-)
Title: Client for the Ifo Institute Time Series
Description: Download ifo business survey data and more time series from
ifo institute <https://www.ifo.de/en/ifo-time-series>.
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between ifo versions 0.2.2 dated 2025-08-31 and 0.2.3 dated 2026-02-06
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 5 +++++ R/ifo.R | 37 ++++++++++++++++++------------------- README.md | 6 ++---- man/figures/README-plotting-1.png |binary man/ifo_business.Rd | 2 +- man/ifo_climate.Rd | 2 +- man/ifo_expectation.Rd | 4 ++-- 9 files changed, 41 insertions(+), 39 deletions(-)
Title: Estimating Fixed Effects Individual Slope Models
Description: Provides the function feis() to estimate fixed effects individual
slope (FEIS) models. The FEIS model constitutes a more general version of
the often-used fixed effects (FE) panel model, as implemented in the
package 'plm' by Croissant and Millo (2008) <doi:10.18637/jss.v027.i02>.
In FEIS models, data are not only person demeaned like in conventional
FE models, but detrended by the predicted individual slope of each
person or group. Estimation is performed by applying least squares lm()
to the transformed data. For more details on FEIS models see Bruederl and
Ludwig (2015, ISBN:1446252442); Frees (2001) <doi:10.2307/3316008>;
Polachek and Kim (1994) <doi:10.1016/0304-4076(94)90075-2>;
Ruettenauer and Ludwig (2020) <doi:10.1177/0049124120926211>;
Wooldridge (2010, ISBN:0262294354). To test consistency of conventional FE
and random effects estimators against heterogeneous slopes, the package
also provides the functions feistest() for an artificial regression test
[...truncated...]
Author: Tobias Ruettenauer [aut, cre] ,
Volker Ludwig [aut]
Maintainer: Tobias Ruettenauer <ruettenauer@sowi.uni-kl.de>
Diff between feisr versions 1.3.0 dated 2022-04-01 and 1.3.1 dated 2026-02-06
DESCRIPTION | 13 MD5 | 24 NAMESPACE | 1 NEWS.md | 6 R/aod.R | 1 R/feis.R | 3 R/feisr-package.R | 2 R/utility_functions.R | 21 build/partial.rdb |binary build/vignette.rds |binary inst/doc/feisr-vignette.R | 2 inst/doc/feisr-vignette.html | 1257 ++++++++++++++++++++++++++++++------------- man/feisr-package.Rd | 4 13 files changed, 931 insertions(+), 403 deletions(-)
Title: Retrieve Data on European Union Law
Description: Access to data on European Union laws and court decisions made easy with pre-defined 'SPARQL' queries and 'GET' requests. See Ovadek (2021) <doi:10.1080/2474736X.2020.1870150> .
Author: Michal Ovadek [aut, cre, cph]
Maintainer: Michal Ovadek <michal.ovadek@gmail.com>
Diff between eurlex versions 0.4.8 dated 2024-07-03 and 0.4.9 dated 2026-02-06
DESCRIPTION | 20 ++++----- MD5 | 36 ++++++++-------- NAMESPACE | 2 NEWS.md | 12 +++++ R/elx_council_votes.R | 63 +++++++++++++--------------- R/elx_curia_list.R | 94 +++++++++++++++++++++---------------------- R/elx_download_xml.R | 20 +++++---- R/elx_fetch_data.R | 92 +++++++++++++++++++----------------------- R/elx_label_eurovoc.R | 6 +- R/elx_make_query.R | 2 R/elx_run_query.R | 60 +++++++++------------------ README.md | 31 -------------- build/vignette.rds |binary inst/doc/sparql-queries.R | 10 +--- inst/doc/sparql-queries.Rmd | 10 +--- inst/doc/sparql-queries.html | 94 +++++++++++++++++++++---------------------- man/elx_download_xml.Rd | 2 man/elx_label_eurovoc.Rd | 2 vignettes/sparql-queries.Rmd | 10 +--- 19 files changed, 255 insertions(+), 311 deletions(-)
Title: Modular Crop Growth Simulations
Description: A cross-platform representation of models as sets of equations
that facilitates modularity in model building and allows users to harness
modern techniques for numerical integration and data visualization.
Documentation is provided by several vignettes included in this package;
also see Lochocki et al. (2022) <doi:10.1093/insilicoplants/diac003>.
Author: Justin M. McGrath [cre, aut] ,
Edward B. Lochocki [aut] ,
Yufeng He [aut] ,
Scott W. Oswald [aut] ,
Scott Rohde [aut] ,
Deepak Jaiswal [aut] ,
Megan L. Matthews [aut] ,
Fernando E. Miguez [aut] ,
Stephen P. Long [aut] ,
Dan Wang [ctb],
David LeBauer [...truncated...]
Maintainer: Justin M. McGrath <jmcgrath@illinois.edu>
Diff between BioCro versions 3.3.0 dated 2025-12-13 and 3.3.1 dated 2026-02-06
BioCro-3.3.0/BioCro/src/math/roots/multidim/broyden_method.h |only BioCro-3.3.1/BioCro/DESCRIPTION | 8 BioCro-3.3.1/BioCro/MD5 | 19 BioCro-3.3.1/BioCro/NEWS.md | 12 BioCro-3.3.1/BioCro/inst/doc/BioCro.R | 7 BioCro-3.3.1/BioCro/inst/doc/BioCro.Rmd | 7 BioCro-3.3.1/BioCro/src/Makevars | 3 BioCro-3.3.1/BioCro/src/math/roots/multidim/broyden.h | 6 BioCro-3.3.1/BioCro/src/math/roots/multidim/zeros.h | 229 +++-------- BioCro-3.3.1/BioCro/src/module_library/broyden_test.h | 6 BioCro-3.3.1/BioCro/vignettes/BioCro.Rmd | 7 11 files changed, 122 insertions(+), 182 deletions(-)
Title: Profiling Inference Functions for Various Model Classes
Description: Provides tools that can be used to calculate, evaluate, plot and use for inference the profiles of *arbitrary* inference functions for *arbitrary* 'glm'-like fitted models with linear predictors. More information on the methods that are implemented can be found in Kosmidis (2008) <https://www.r-project.org/doc/Rnews/Rnews_2008-2.pdf>.
Author: Ioannis Kosmidis [aut, cre]
Maintainer: Ioannis Kosmidis <ioannis.kosmidis@warwick.ac.uk>
Diff between profileModel versions 0.6.1 dated 2021-01-08 and 0.6.2 dated 2026-02-06
DESCRIPTION | 9 +++++---- MD5 | 11 ++++++----- R/print.profileModel.R | 2 +- inst/CHANGES | 4 ++++ inst/WORDLIST |only man/plot.profileModel.Rd | 2 +- man/profileModel.Rd | 2 +- 7 files changed, 18 insertions(+), 12 deletions(-)
Title: Add Ipea Editorial Standards to 'ggplot2' Graphics
Description: Convenient functions to create 'ggplot2' graphics following the
editorial guidelines of the Institute for Applied Economic
Research (Ipea).
Author: Pedro Ferreira [aut, cre],
Pedro Jorge [aut],
Daniel Lima [aut],
Gustavo Coelho [aut],
Rafael H. M. Pereira [aut],
Lucas Mation [aut],
Fabio Vaz [ctb],
Ipea - Institue for Applied Economic Research [cph, fnd]
Maintainer: Pedro Ferreira <pedro.ferreira2@ipea.gov.br>
Diff between ipeaplot versions 0.5.0 dated 2025-10-07 and 0.5.1 dated 2026-02-06
DESCRIPTION | 8 ++--- MD5 | 32 ++++++++++---------- NEWS.md | 3 + R/ipea_palette.R | 68 +++++++++++++++++++------------------------ R/save_ipeaplot.R | 60 ++++++++++++++++++++----------------- R/scale_ipea.R | 22 +++++-------- README.md | 2 - inst/doc/cookbook.html | 4 +- inst/doc/intro_ipeaplot.R | 18 +++++------ inst/doc/intro_ipeaplot.Rmd | 4 +- inst/doc/intro_ipeaplot.html | 5 +-- man/ipea_pal.Rd | 10 +++--- man/ipea_palette.Rd | 10 +++--- man/save_ipeaplot.Rd | 2 - man/scale_color_ipea.Rd | 8 ++--- man/scale_fill_ipea.Rd | 8 ++--- vignettes/intro_ipeaplot.Rmd | 4 +- 17 files changed, 133 insertions(+), 135 deletions(-)
Title: R Integration for 'Goose' AI
Description: Seamless integration between R and 'Goose' AI capabilities
including memory management, visualization enhancements, and workflow
automation. Save R objects to 'Goose' memory, apply Block branding to
visualizations, and manage data science project workflows.
For more information about 'Goose' AI, see <https://github.com/block/goose>.
Author: Brandon Theriault [aut, cre]
Maintainer: Brandon Theriault <btheriault@block.xyz>
Diff between gooseR versions 0.1.1 dated 2025-12-22 and 0.1.2 dated 2026-02-06
DESCRIPTION | 6 +- MD5 | 51 +++++++++++---------- NAMESPACE | 2 NEWS.md | 20 ++++++++ R/addins.R | 3 - R/ai_assistant.R | 6 +- R/async.R | 10 ++-- R/branding.R | 6 +- R/cli_integration.R | 92 +++++++++++++++++++++++++++------------ R/cli_runner.R |only R/goose_ask_enhanced.R | 70 ++++++++++++++++------------- R/streaming.R | 46 ++++++++++++++++++- R/templates.R | 1 R/ui_components.R | 2 README.md | 17 +++++-- inst/doc/use-case-demo.html | 4 - man/StreamHandler.Rd | 31 +++++++++++-- man/StreamSession.Rd | 10 ++++ man/WorkerPool.Rd | 15 +++++- man/goose_ask.Rd | 12 ++++- man/goose_ask_raw.Rd | 9 ++- man/goose_async_timeout.Rd | 4 - man/goose_recipe.Rd | 15 +++++- man/goose_session.Rd | 10 +++- man/goose_stream.Rd | 11 ++++ man/goose_templates.Rd |only man/goose_test_cli.Rd | 8 ++- tests/testthat/test-cli-runner.R |only 28 files changed, 341 insertions(+), 120 deletions(-)
Title: 'VigiBase' Pharmacovigilance Database Toolbox
Description: Perform the analysis of the World Health Organization
(WHO) Pharmacovigilance database 'VigiBase' (Extract Case Level version),
<https://who-umc.org/>
e.g., load data, perform data management,
disproportionality analysis, and descriptive statistics. Intended for
pharmacovigilance routine use or studies.
This package is NOT supported nor reflect the opinion of the WHO, or the
Uppsala Monitoring Centre.
Disproportionality methods are described by Norén et
al (2013) <doi:10.1177/0962280211403604>.
Author: Charles Dolladille [aut, cre] ,
Basile Chretien [aut] ,
Universite de Caen Normandie [cph] ,
Unite de pharmaco-epidemiologie [cph]
Maintainer: Charles Dolladille <cdolladille@hotmail.com>
Diff between vigicaen versions 0.16.1 dated 2025-07-25 and 1.0.0 dated 2026-02-06
vigicaen-0.16.1/vigicaen/R/dt_fst.R |only vigicaen-0.16.1/vigicaen/man/dt_fst.Rd |only vigicaen-0.16.1/vigicaen/tests/testthat/_snaps/dt_fst.md |only vigicaen-0.16.1/vigicaen/tests/testthat/test-dt_fst.R |only vigicaen-1.0.0/vigicaen/DESCRIPTION | 10 vigicaen-1.0.0/vigicaen/MD5 | 238 - vigicaen-1.0.0/vigicaen/NAMESPACE | 3 vigicaen-1.0.0/vigicaen/NEWS.md | 49 vigicaen-1.0.0/vigicaen/R/add_adr.R | 13 vigicaen-1.0.0/vigicaen/R/add_dose.R |only vigicaen-1.0.0/vigicaen/R/add_drug.R | 11 vigicaen-1.0.0/vigicaen/R/add_ind.R |only vigicaen-1.0.0/vigicaen/R/check_data_type.R | 457 +- vigicaen-1.0.0/vigicaen/R/check_dm.R | 98 vigicaen-1.0.0/vigicaen/R/check_id_list.R | 220 - vigicaen-1.0.0/vigicaen/R/compute_dispro.R | 688 +-- vigicaen-1.0.0/vigicaen/R/compute_or_mod.R | 220 - vigicaen-1.0.0/vigicaen/R/create_example_tables.R | 2 vigicaen-1.0.0/vigicaen/R/data_doc.R | 2 vigicaen-1.0.0/vigicaen/R/desc_cont.R | 646 +-- vigicaen-1.0.0/vigicaen/R/desc_facvar.R | 420 +- vigicaen-1.0.0/vigicaen/R/desc_outcome.R | 346 - vigicaen-1.0.0/vigicaen/R/desc_tto.R | 218 - vigicaen-1.0.0/vigicaen/R/dt_parquet.R | 2 vigicaen-1.0.0/vigicaen/R/get_llt_smq.R | 2 vigicaen-1.0.0/vigicaen/R/get_llt_soc.R | 2 vigicaen-1.0.0/vigicaen/R/query_data_type.R | 139 vigicaen-1.0.0/vigicaen/R/screen_adr.R | 4 vigicaen-1.0.0/vigicaen/R/screen_drug.R | 272 - vigicaen-1.0.0/vigicaen/R/tb_subset.R | 779 ++-- vigicaen-1.0.0/vigicaen/R/tb_vigibase.R | 2 vigicaen-1.0.0/vigicaen/R/tb_who.R | 2 vigicaen-1.0.0/vigicaen/R/vigi_routine.R | 1796 +++++---- vigicaen-1.0.0/vigicaen/README.md | 7 vigicaen-1.0.0/vigicaen/inst/doc/basic_workflow.R | 22 vigicaen-1.0.0/vigicaen/inst/doc/basic_workflow.Rmd | 53 vigicaen-1.0.0/vigicaen/inst/doc/basic_workflow.html | 347 + vigicaen-1.0.0/vigicaen/inst/doc/descriptive.R | 2 vigicaen-1.0.0/vigicaen/inst/doc/descriptive.Rmd | 2 vigicaen-1.0.0/vigicaen/inst/doc/descriptive.html | 7 vigicaen-1.0.0/vigicaen/inst/doc/getting_started.html | 5 vigicaen-1.0.0/vigicaen/inst/doc/interactions.html | 5 vigicaen-1.0.0/vigicaen/inst/doc/routine_pharmacovigilance.R | 2 vigicaen-1.0.0/vigicaen/inst/doc/routine_pharmacovigilance.Rmd | 2 vigicaen-1.0.0/vigicaen/inst/doc/routine_pharmacovigilance.html | 9 vigicaen-1.0.0/vigicaen/inst/doc/template_dictionary.R | 8 vigicaen-1.0.0/vigicaen/inst/doc/template_dictionary.Rmd | 8 vigicaen-1.0.0/vigicaen/inst/doc/template_dictionary.html | 15 vigicaen-1.0.0/vigicaen/inst/doc/template_main.R | 19 vigicaen-1.0.0/vigicaen/inst/doc/template_main.Rmd | 19 vigicaen-1.0.0/vigicaen/inst/doc/template_main.html | 239 - vigicaen-1.0.0/vigicaen/inst/doc/template_routine.R | 2 vigicaen-1.0.0/vigicaen/inst/doc/template_routine.Rmd | 2 vigicaen-1.0.0/vigicaen/inst/doc/template_routine.html | 7 vigicaen-1.0.0/vigicaen/man/add_adr.Rd | 4 vigicaen-1.0.0/vigicaen/man/add_dose.Rd |only vigicaen-1.0.0/vigicaen/man/add_drug.Rd | 8 vigicaen-1.0.0/vigicaen/man/add_ind.Rd |only vigicaen-1.0.0/vigicaen/man/create_example_tables.Rd | 2 vigicaen-1.0.0/vigicaen/man/desc_cont.Rd | 2 vigicaen-1.0.0/vigicaen/man/desc_outcome.Rd | 2 vigicaen-1.0.0/vigicaen/man/figures/vg.png |binary vigicaen-1.0.0/vigicaen/man/get_drecno.Rd | 2 vigicaen-1.0.0/vigicaen/man/get_llt_smq.Rd | 4 vigicaen-1.0.0/vigicaen/man/get_llt_soc.Rd | 4 vigicaen-1.0.0/vigicaen/man/meddra_.Rd | 2 vigicaen-1.0.0/vigicaen/man/screen_adr.Rd | 4 vigicaen-1.0.0/vigicaen/man/screen_drug.Rd | 4 vigicaen-1.0.0/vigicaen/man/tb_meddra.Rd | 2 vigicaen-1.0.0/vigicaen/man/tb_subset.Rd | 2 vigicaen-1.0.0/vigicaen/man/tb_vigibase.Rd | 4 vigicaen-1.0.0/vigicaen/man/tb_who.Rd | 4 vigicaen-1.0.0/vigicaen/man/vigi_routine.Rd | 9 vigicaen-1.0.0/vigicaen/tests/testthat/Rplots.pdf |binary vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/add_adr.md | 245 - vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/add_dose.md |only vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/add_drug.md | 423 +- vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/add_ind.md |only vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/check_data_type.md | 1030 ++--- vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/desc_cont.md | 117 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/macos |only vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/query_data_type.md | 115 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/arrow-table.svg | 52 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/base-graphic.svg | 52 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/case-time-to-onset.svg | 60 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/case-tto-above-90-days.svg | 60 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/case-tto-below-90-days.svg | 60 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/custom-drug-and-adr-labels.svg | 60 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/dual-drug-analysis.svg | 52 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/exporting.svg | 60 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/ic025-below-0.svg | 52 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/no-cases.svg | 28 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/no-rechallenge.svg | 32 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/no-time-to-onset-export.svg | 28 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/no-time-to-onset-with-2-drugs.svg | 28 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/no-time-to-onset.svg | 28 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/suspect-only-true.svg | 52 vigicaen-1.0.0/vigicaen/tests/testthat/test-add_adr.R | 32 vigicaen-1.0.0/vigicaen/tests/testthat/test-add_dose.R |only vigicaen-1.0.0/vigicaen/tests/testthat/test-add_drug.R | 35 vigicaen-1.0.0/vigicaen/tests/testthat/test-add_ind.R |only vigicaen-1.0.0/vigicaen/tests/testthat/test-check_data_type.R | 468 +- vigicaen-1.0.0/vigicaen/tests/testthat/test-check_dm.R | 132 vigicaen-1.0.0/vigicaen/tests/testthat/test-check_id_list.R | 166 vigicaen-1.0.0/vigicaen/tests/testthat/test-compute_dispro.R | 1038 ++--- vigicaen-1.0.0/vigicaen/tests/testthat/test-compute_or_mod.R | 220 - vigicaen-1.0.0/vigicaen/tests/testthat/test-desc_cont.R | 927 ++--- vigicaen-1.0.0/vigicaen/tests/testthat/test-desc_facvar.R | 826 ++-- vigicaen-1.0.0/vigicaen/tests/testthat/test-dt_parquet.R | 5 vigicaen-1.0.0/vigicaen/tests/testthat/test-extract_tto.R | 442 +- vigicaen-1.0.0/vigicaen/tests/testthat/test-get_drecno.R | 1440 +++---- vigicaen-1.0.0/vigicaen/tests/testthat/test-query_data_type.R | 8 vigicaen-1.0.0/vigicaen/tests/testthat/test-screen_adr.R | 634 +-- vigicaen-1.0.0/vigicaen/tests/testthat/test-tb_subset.R | 1036 ++--- vigicaen-1.0.0/vigicaen/tests/testthat/test-vigi_routine.R | 1853 +++++----- vigicaen-1.0.0/vigicaen/tests/testthat/testthat-problems.rds |only vigicaen-1.0.0/vigicaen/vignettes/basic_workflow.Rmd | 53 vigicaen-1.0.0/vigicaen/vignettes/descriptive.Rmd | 2 vigicaen-1.0.0/vigicaen/vignettes/routine_pharmacovigilance.Rmd | 2 vigicaen-1.0.0/vigicaen/vignettes/template_dictionary.Rmd | 8 vigicaen-1.0.0/vigicaen/vignettes/template_main.Rmd | 19 vigicaen-1.0.0/vigicaen/vignettes/template_routine.Rmd | 2 122 files changed, 10116 insertions(+), 9348 deletions(-)
Title: 'Mica' Data Web Portal Client
Description: 'Mica' is a server application used to create data web portals for
large-scale epidemiological studies or multiple-study consortia. 'Mica' helps
studies to provide scientifically robust data visibility and web presence
without significant information technology effort. 'Mica' provides a
structured description of consortia, studies, annotated and searchable data
dictionaries, and data access request management. This 'Mica' client allows
to perform data extraction for reporting purposes.
Author: Yannick Marcon [aut, cre] ,
OBiBa group [cph]
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>
Diff between micar versions 1.1.2 dated 2021-04-16 and 1.2.0 dated 2026-02-06
DESCRIPTION | 16 - MD5 | 62 +++-- NAMESPACE | 4 R/mica.R | 74 ++++-- R/mica.dars.R | 119 ++++++++++- R/mica.datasets.R | 34 +-- R/mica.networks.R | 18 - R/mica.rql.R | 4 R/mica.studies.R | 20 - R/mica.study.dces.R | 15 - R/mica.study.populations.R | 15 - R/mica.variables.R | 23 +- README.md | 13 - build/vignette.rds |binary inst/doc/mica-dar.R | 16 - inst/doc/mica-dar.html | 372 ++++++++++++++++++++++++++++------ inst/doc/mica-search.R | 20 - inst/doc/mica-search.html | 389 +++++++++++++++++++++++++++++------- man/mica.dar.Rd | 10 man/mica.dar.actions.Rd | 12 - man/mica.dar.agreements.Rd |only man/mica.dar.amendment.Rd | 10 man/mica.dar.amendment.form.Rd | 12 - man/mica.dar.amendment.history.Rd | 12 - man/mica.dar.amendments.Rd | 10 man/mica.dar.amendments.history.Rd | 10 man/mica.dar.form.Rd | 12 - man/mica.dar.history.Rd | 14 - man/mica.dar.preliminaries.Rd |only man/mica.dar.preliminary.Rd |only man/mica.dar.preliminary.history.Rd |only man/mica.dars.Rd | 14 - man/mica.login.Rd | 5 man/mica.studies.Rd | 2 34 files changed, 1006 insertions(+), 331 deletions(-)
Title: Creating Echarts Visualizations as Easy as Possible
Description: Create beautiful and interactive visualizations in a single function call. The 'data.table' package is utilized to perform the data wrangling necessary to prepare your data for the plot types you wish to build, along with allowing fast processing for big data. There are two broad classes of plots available: standard plots and machine learning evaluation plots. There are lots of parameters available in each plot type function for customizing the plots (such as faceting) and data wrangling (such as variable transformations and aggregation).
Author: Adrian Antico [aut, cre, cph]
Maintainer: Adrian Antico <adrianantico@gmail.com>
Diff between AutoPlots versions 1.0.0 dated 2024-01-23 and 1.5.0 dated 2026-02-06
AutoPlots-1.0.0/AutoPlots/inst |only AutoPlots-1.5.0/AutoPlots/DESCRIPTION | 16 AutoPlots-1.5.0/AutoPlots/MD5 | 168 AutoPlots-1.5.0/AutoPlots/NAMESPACE | 197 - AutoPlots-1.5.0/AutoPlots/NEWS.md | 45 AutoPlots-1.5.0/AutoPlots/R/AccessoryFunctions.R | 111 AutoPlots-1.5.0/AutoPlots/R/Imports.R | 15 AutoPlots-1.5.0/AutoPlots/R/PlotFunctions.R | 504 ++ AutoPlots-1.5.0/AutoPlots/R/PlotFunctions_NEW.R |only AutoPlots-1.5.0/AutoPlots/R/revised_echarts4r_functions.R |only AutoPlots-1.5.0/AutoPlots/R/zzz.R |only AutoPlots-1.5.0/AutoPlots/README.md | 1743 ++++++++-- AutoPlots-1.5.0/AutoPlots/man/ACF.Rd |only AutoPlots-1.5.0/AutoPlots/man/Area.Rd |only AutoPlots-1.5.0/AutoPlots/man/Bar.Rd |only AutoPlots-1.5.0/AutoPlots/man/BarPlot3D.Rd |only AutoPlots-1.5.0/AutoPlots/man/BinaryMetricsPlot.Rd |only AutoPlots-1.5.0/AutoPlots/man/Box.Rd |only AutoPlots-1.5.0/AutoPlots/man/Calibration.Box.Rd |only AutoPlots-1.5.0/AutoPlots/man/Calibration.Line.Rd |only AutoPlots-1.5.0/AutoPlots/man/ConfusionMatrix.Rd 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AutoPlots-1.5.0/AutoPlots/man/Plot.BinaryMetrics.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.Box.Rd | 35 AutoPlots-1.5.0/AutoPlots/man/Plot.Calibration.Box.Rd | 19 AutoPlots-1.5.0/AutoPlots/man/Plot.Calibration.Line.Rd | 19 AutoPlots-1.5.0/AutoPlots/man/Plot.ConfusionMatrix.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.Copula.Rd | 31 AutoPlots-1.5.0/AutoPlots/man/Plot.Copula3D.Rd | 33 AutoPlots-1.5.0/AutoPlots/man/Plot.CorrMatrix.Rd | 33 AutoPlots-1.5.0/AutoPlots/man/Plot.Density.Rd | 35 AutoPlots-1.5.0/AutoPlots/man/Plot.Donut.Rd | 35 AutoPlots-1.5.0/AutoPlots/man/Plot.Gains.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.HeatMap.Rd | 33 AutoPlots-1.5.0/AutoPlots/man/Plot.Histogram.Rd | 35 AutoPlots-1.5.0/AutoPlots/man/Plot.Lift.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.Line.Rd | 39 AutoPlots-1.5.0/AutoPlots/man/Plot.PACF.Rd | 33 AutoPlots-1.5.0/AutoPlots/man/Plot.Parallel.Rd | 34 AutoPlots-1.5.0/AutoPlots/man/Plot.PartialDependence.Box.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.PartialDependence.HeatMap.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.PartialDependence.Line.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.Pie.Rd | 35 AutoPlots-1.5.0/AutoPlots/man/Plot.ProbabilityPlot.Rd | 35 AutoPlots-1.5.0/AutoPlots/man/Plot.ROC.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.Radar.Rd | 35 AutoPlots-1.5.0/AutoPlots/man/Plot.Residuals.Histogram.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.Residuals.Scatter.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.River.Rd | 35 AutoPlots-1.5.0/AutoPlots/man/Plot.Rosetype.Rd | 35 AutoPlots-1.5.0/AutoPlots/man/Plot.Scatter.Rd | 33 AutoPlots-1.5.0/AutoPlots/man/Plot.Scatter3D.Rd | 33 AutoPlots-1.5.0/AutoPlots/man/Plot.ShapImportance.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.StackedBar.Rd | 33 AutoPlots-1.5.0/AutoPlots/man/Plot.Step.Rd | 35 AutoPlots-1.5.0/AutoPlots/man/Plot.VariableImportance.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.WordCloud.Rd | 33 AutoPlots-1.5.0/AutoPlots/man/Plot.prROC.Rd |only AutoPlots-1.5.0/AutoPlots/man/ProbabilityPlot.Rd |only AutoPlots-1.5.0/AutoPlots/man/ROC.Rd |only AutoPlots-1.5.0/AutoPlots/man/Radar.Rd |only AutoPlots-1.5.0/AutoPlots/man/Residuals.Histogram.Rd |only AutoPlots-1.5.0/AutoPlots/man/Residuals.Scatter.Rd |only AutoPlots-1.5.0/AutoPlots/man/River.Rd |only AutoPlots-1.5.0/AutoPlots/man/Rosetype.Rd |only AutoPlots-1.5.0/AutoPlots/man/Scatter.Rd |only AutoPlots-1.5.0/AutoPlots/man/Scatter3D.Rd |only AutoPlots-1.5.0/AutoPlots/man/ShapImportance.Rd |only AutoPlots-1.5.0/AutoPlots/man/StackedBar.Rd |only AutoPlots-1.5.0/AutoPlots/man/Step.Rd |only AutoPlots-1.5.0/AutoPlots/man/VariableImportance.Rd |only AutoPlots-1.5.0/AutoPlots/man/WordCloud.Rd |only AutoPlots-1.5.0/AutoPlots/man/display_plots_grid.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_area_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_bar_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_boxplot_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_density_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_grid_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_heatmap_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_legend_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_parallel_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_title_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_toolbox_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_tooltip_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_visual_map_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_x_axis_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_y_axis_full.Rd |only 106 files changed, 3102 insertions(+), 787 deletions(-)
Title: Indexed 'tibble' and Methods for 'dplyr'
Description: Provides extended data frames, with a special data frame column which contains two indexes, with potentially a nesting structure, and support for tibbles and methods for 'dplyr'.
Author: Yves Croissant [aut, cre]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>
Diff between tidydfidx versions 0.0-1 dated 2025-06-16 and 0.0-3 dated 2026-02-06
tidydfidx-0.0-1/tidydfidx/inst/doc/tidydfidx.pdf |only tidydfidx-0.0-3/tidydfidx/DESCRIPTION | 12 +-- tidydfidx-0.0-3/tidydfidx/MD5 | 14 ++-- tidydfidx-0.0-3/tidydfidx/NEWS.md | 8 ++ tidydfidx-0.0-3/tidydfidx/build/vignette.rds |binary tidydfidx-0.0-3/tidydfidx/inst/doc/tidydfidx.R | 24 ++----- tidydfidx-0.0-3/tidydfidx/inst/doc/tidydfidx.html |only tidydfidx-0.0-3/tidydfidx/inst/doc/tidydfidx.qmd | 74 +++++++++++----------- tidydfidx-0.0-3/tidydfidx/vignettes/tidydfidx.qmd | 74 +++++++++++----------- 9 files changed, 109 insertions(+), 97 deletions(-)
Title: Access to the 'RESOURCECODE' Hindcast Database
Description: Utility functions to download data from the 'RESOURCECODE'
hindcast database of sea-states, time series of sea-state parameters
and time series of 1D and 2D wave spectra. See
<https://resourcecode.ifremer.fr> for more details about the available
data. Also provides facilities to plot and analyse downloaded data,
such as computing the sea-state parameters from both the 1D and 2D
surface elevation variance spectral density.
Author: Nicolas Raillard [aut, cre]
Maintainer: Nicolas Raillard <nicolas.raillard@ifremer.fr>
Diff between resourcecode versions 0.5.2 dated 2026-01-09 and 0.5.3 dated 2026-02-06
resourcecode-0.5.2/resourcecode/tests/testthat/test-data_download.R |only resourcecode-0.5.3/resourcecode/DESCRIPTION | 16 resourcecode-0.5.3/resourcecode/MD5 | 43 resourcecode-0.5.3/resourcecode/NEWS.md | 8 resourcecode-0.5.3/resourcecode/R/download_data.R | 122 ++ resourcecode-0.5.3/resourcecode/R/spectral_data_download.R | 138 ++- resourcecode-0.5.3/resourcecode/R/utils.R | 39 resourcecode-0.5.3/resourcecode/README.md | 6 resourcecode-0.5.3/resourcecode/inst/doc/resourcecode.R | 64 - resourcecode-0.5.3/resourcecode/inst/doc/resourcecode.Rmd | 68 - resourcecode-0.5.3/resourcecode/inst/doc/resourcecode.html | 256 ++--- resourcecode-0.5.3/resourcecode/man/compute_sea_state_1d_spectrum.Rd | 4 resourcecode-0.5.3/resourcecode/man/get_1d_spectrum.Rd | 22 resourcecode-0.5.3/resourcecode/man/get_2d_spectrum.Rd | 12 resourcecode-0.5.3/resourcecode/man/get_parameters.Rd | 6 resourcecode-0.5.3/resourcecode/tests/testthat/Rplots.pdf |binary resourcecode-0.5.3/resourcecode/tests/testthat/_vcr |only resourcecode-0.5.3/resourcecode/tests/testthat/test-plot_1d_specta.R |only resourcecode-0.5.3/resourcecode/tests/testthat/test-spectral_data_download.R |only resourcecode-0.5.3/resourcecode/tests/testthat/test-test_cut_seasons.R | 438 ++++++++-- resourcecode-0.5.3/resourcecode/tests/testthat/tests_download_parameters.R |only resourcecode-0.5.3/resourcecode/vignettes/resourcecode.Rmd | 68 - 22 files changed, 841 insertions(+), 469 deletions(-)
More information about quickSentiment at CRAN
Permanent link
Title: Reads in 'Neuroimaging' 'GIFTI' Files with Geometry Information
Description: Functions to read in the geometry format under the
'Neuroimaging' 'Informatics' Technology Initiative ('NIfTI'), called
'GIFTI' <https://www.nitrc.org/projects/gifti/>.
These files contain surfaces of brain imaging data.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between gifti versions 0.8.0 dated 2020-11-11 and 0.9.0 dated 2026-02-06
DESCRIPTION | 16 +- MD5 | 22 +-- NEWS.md | 6 R/data_encoder.R | 9 - R/read_gifti.R | 4 README.md | 10 - build/vignette.rds |binary inst/doc/Reading_GIFTI_Files.R | 76 +++++------ inst/doc/Reading_GIFTI_Files.Rmd | 8 - inst/doc/Reading_GIFTI_Files.html | 241 ++++++++++++++++++-------------------- man/readgii.Rd | 4 vignettes/Reading_GIFTI_Files.Rmd | 8 - 12 files changed, 195 insertions(+), 209 deletions(-)
Title: Resource Resolver
Description: A resource represents some data or a computation unit. It is
described by a URL and credentials. This package proposes a Resource model
with "resolver" and "client" classes to facilitate the access and the usage of the
resources.
Author: Yannick Marcon [aut, cre] ,
OBiBa group [cph]
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>
Diff between resourcer versions 1.4.0 dated 2023-04-25 and 1.5.0 dated 2026-02-06
DESCRIPTION | 18 + MD5 | 20 +- R/DBIResourceConnector.R | 9 R/PostgresResourceConnector.R | 19 +- README.md | 14 - build/vignette.rds |binary inst/doc/resources-introduction.R | 58 +++--- inst/doc/resources-introduction.Rmd | 6 inst/doc/resources-introduction.html | 323 ++++++++++++++++++++--------------- inst/resources/resource.js | 108 +++++------ vignettes/resources-introduction.Rmd | 6 11 files changed, 330 insertions(+), 251 deletions(-)
Title: Solve for Leaf Temperature Using Energy Balance
Description: Implements models of leaf temperature using energy balance. It uses units to ensure that parameters are properly specified and transformed before calculations. It allows separate lower and upper surface conductances to heat and water vapour, so sensible and latent heat loss are calculated for each surface separately as in Foster and Smith (1986) <doi:10.1111/j.1365-3040.1986.tb02108.x>. It's straightforward to model leaf temperature over environmental gradients such as light, air temperature, humidity, and wind. It can also model leaf temperature over trait gradients such as leaf size or stomatal conductance. Other references are Monteith and Unsworth (2013, ISBN:9780123869104), Nobel (2009, ISBN:9780123741431), and Okajima et al. (2012) <doi:10.1007/s11284-011-0905-5>.
Author: Chris Muir [aut, cre]
Maintainer: Chris Muir <cdmuir@wisc.edu>
Diff between tealeaves versions 1.0.6.1 dated 2025-06-23 and 1.0.7 dated 2026-02-06
DESCRIPTION | 23 +++++++------ MD5 | 44 ++++++++++++------------- NEWS.md | 7 ++++ R/constants.R | 14 ++++---- R/enviro-par.R | 14 ++++---- R/leaf-par.R | 14 ++++---- R/make_parameters.R | 1 R/tealeaves.R | 4 +- R/tleaves.R | 48 ++++++++++++++++++--------- README.md | 61 +++++++++++++++++------------------ build/vignette.rds |binary data/tl_example1.rda |binary inst/CITATION | 10 ++--- inst/doc/parameter-functions.html | 18 +++++----- inst/doc/tealeaves-intermediate.html | 8 ++-- inst/doc/tealeaves-introduction.Rmd | 2 - inst/doc/tealeaves-introduction.html | 30 ++++++++--------- man/constants.Rd | 11 ++++-- man/dot-get_ps.Rd | 2 - man/enviro_par.Rd | 11 ++++-- man/leaf_par.Rd | 11 ++++-- man/tealeaves.Rd | 15 ++++++++ vignettes/tealeaves-introduction.Rmd | 2 - 23 files changed, 206 insertions(+), 144 deletions(-)
Title: Simulate Disease Outbreak Line List and Contacts Data
Description: Tools to simulate realistic raw case data for an epidemic in
the form of line lists and contacts using a branching process.
Simulated outbreaks are parameterised with epidemiological parameters
and can have age-structured populations, age-stratified
hospitalisation and death risk and time-varying case fatality risk.
Author: Joshua W. Lambert [aut, cre, cph] ,
Carmen Tamayo Cuartero [aut] ,
Hugo Gruson [ctb, rev] ,
Pratik R. Gupte [ctb, rev] ,
Adam Kucharski [rev] ,
Chris Hartgerink [rev] ,
Sebastian Funk [ctb] ,
London School of Hygiene and Tropical Medicine, LSHTM [cph [...truncated...]
Maintainer: Joshua W. Lambert <joshua.lambert@lshtm.ac.uk>
Diff between simulist versions 0.6.0 dated 2025-08-28 and 0.7.0 dated 2026-02-06
DESCRIPTION | 8 LICENSE | 2 MD5 | 122 +- NEWS.md | 32 R/add_cols.R | 23 R/checkers.R | 21 R/create_config.R | 18 R/messy_linelist.R | 4 R/sim_contacts.R | 4 R/sim_internal.R | 20 R/sim_linelist.R | 20 R/sim_outbreak.R | 13 R/utils.R | 25 README.md | 166 +- build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 3 inst/doc/age-strat-risks.R | 2 inst/doc/age-strat-risks.html | 153 +- inst/doc/age-struct-pop.html | 70 - inst/doc/design-principles.html | 2 inst/doc/reporting-delays-truncation.R | 28 inst/doc/reporting-delays-truncation.Rmd | 28 inst/doc/reporting-delays-truncation.html | 212 +-- inst/doc/simulist.R | 12 inst/doc/simulist.Rmd | 12 inst/doc/simulist.html | 395 +++--- inst/doc/time-varying-cfr.R | 29 inst/doc/time-varying-cfr.Rmd | 31 inst/doc/time-varying-cfr.html | 205 +-- inst/doc/vis-linelist.R | 111 + inst/doc/vis-linelist.Rmd | 124 +- inst/doc/vis-linelist.html | 542 +++++---- inst/doc/wrangling-linelist.R | 12 inst/doc/wrangling-linelist.Rmd | 14 inst/doc/wrangling-linelist.html | 363 +++--- man/create_config.Rd | 9 man/dot-add_cols.Rd | 15 man/dot-check_sim_input.Rd | 16 man/dot-sim_internal.Rd | 7 man/figures/simulist_archi.svg | 81 - man/sim_contacts.Rd | 2 man/sim_linelist.Rd | 13 man/sim_outbreak.Rd | 13 man/simulist-package.Rd | 2 tests/testthat/_snaps/sim_contacts.md | 294 ++-- tests/testthat/_snaps/sim_linelist.md | 972 ++++++++-------- tests/testthat/_snaps/sim_outbreak.md | 1798 +++++++++++++++--------------- tests/testthat/test-add_cols.R | 34 tests/testthat/test-checkers.R | 39 tests/testthat/test-create_config.R | 46 tests/testthat/test-messy_linelist.R | 2 tests/testthat/test-sim_contacts.R | 8 tests/testthat/test-sim_linelist.R | 49 tests/testthat/test-sim_network_bp.R | 4 tests/testthat/test-sim_outbreak.R | 10 tests/testthat/test-truncate_linelist.R | 6 vignettes/reporting-delays-truncation.Rmd | 28 vignettes/simulist.Rmd | 12 vignettes/time-varying-cfr.Rmd | 31 vignettes/vis-linelist.Rmd | 124 +- vignettes/wrangling-linelist.Rmd | 14 62 files changed, 3486 insertions(+), 2969 deletions(-)
Title: Longitudinal Sequential Imputation and Prediction with Bayesian
Trees Mixed-Effects Models for Longitudinal Data
Description: Implements a sequential imputation framework using Bayesian Mixed-Effects Trees ('SBMTrees') for handling missing data in longitudinal studies. The package supports a variety of models, including non-linear relationships and non-normal random effects and residuals, leveraging Dirichlet Process priors for increased flexibility. Key features include handling Missing at Random (MAR) longitudinal data, imputation of both covariates and outcomes, and generating posterior predictive samples for further analysis. The methodology is designed for applications in epidemiology, biostatistics, and other fields requiring robust handling of missing data in longitudinal settings.
Author: Jungang Zou [aut, cre],
Liangyuan Hu [aut],
Robert McCulloch [ctb],
Rodney Sparapani [ctb],
Charles Spanbauer [ctb],
Robert Gramacy [ctb],
Jean-Sebastien Roy [ctb]
Maintainer: Jungang Zou <jungang.zou@gmail.com>
This is a re-admission after prior archival of version 1.2 dated 2024-12-11
Diff between SBMTrees versions 1.2 dated 2024-12-11 and 1.4 dated 2026-02-06
SBMTrees-1.2/SBMTrees/man/simulation_prediction.Rd |only SBMTrees-1.2/SBMTrees/src/BART/bart.cpp |only SBMTrees-1.2/SBMTrees/src/BART/bd.cpp |only SBMTrees-1.4/SBMTrees/DESCRIPTION | 24 SBMTrees-1.4/SBMTrees/MD5 | 85 - SBMTrees-1.4/SBMTrees/NAMESPACE | 28 SBMTrees-1.4/SBMTrees/NEWS.md | 6 SBMTrees-1.4/SBMTrees/R/BMTrees_prediction.R | 238 +++ SBMTrees-1.4/SBMTrees/R/RcppExports.R | 50 SBMTrees-1.4/SBMTrees/R/Rcpp_function.R | 55 SBMTrees-1.4/SBMTrees/R/sequential_imputation.R | 328 ++--- SBMTrees-1.4/SBMTrees/R/simulation_imputation.R | 890 ++++++++------ SBMTrees-1.4/SBMTrees/R/simulation_prediction.R | 540 ++++---- SBMTrees-1.4/SBMTrees/README.md | 48 SBMTrees-1.4/SBMTrees/build/vignette.rds |binary SBMTrees-1.4/SBMTrees/inst/doc/SBMTrees_Introduction.R | 95 - SBMTrees-1.4/SBMTrees/inst/doc/SBMTrees_Introduction.Rmd | 101 - SBMTrees-1.4/SBMTrees/inst/doc/SBMTrees_Introduction.html | 269 +--- SBMTrees-1.4/SBMTrees/man/BMLMM_prediction.Rd |only SBMTrees-1.4/SBMTrees/man/BMTrees_prediction.Rd | 51 SBMTrees-1.4/SBMTrees/man/SBMTrees-package.Rd | 51 SBMTrees-1.4/SBMTrees/man/apply_locf_nocb.Rd | 47 SBMTrees-1.4/SBMTrees/man/sequential_imputation.Rd | 68 - SBMTrees-1.4/SBMTrees/man/simulation_imputation.Rd | 89 - SBMTrees-1.4/SBMTrees/man/simulation_imputation_LTFU.Rd |only SBMTrees-1.4/SBMTrees/man/simulation_prediction_binary.Rd |only SBMTrees-1.4/SBMTrees/man/simulation_prediction_conti.Rd |only SBMTrees-1.4/SBMTrees/src/BART/bart.h | 113 + SBMTrees-1.4/SBMTrees/src/BART/bartfuns.cpp | 261 ---- SBMTrees-1.4/SBMTrees/src/BART/bartfuns.h | 276 ++++ SBMTrees-1.4/SBMTrees/src/BART/bd.h | 365 +++++ SBMTrees-1.4/SBMTrees/src/BART/heterbart.h |only SBMTrees-1.4/SBMTrees/src/BART/heterbartfuns.h |only SBMTrees-1.4/SBMTrees/src/BART/heterbd.h |only SBMTrees-1.4/SBMTrees/src/BART/lambda.cpp |only SBMTrees-1.4/SBMTrees/src/BART/lambda.h | 75 - SBMTrees-1.4/SBMTrees/src/BART/rn.h | 8 SBMTrees-1.4/SBMTrees/src/BART/treefuns.cpp | 13 SBMTrees-1.4/SBMTrees/src/BART/treefuns.h | 13 SBMTrees-1.4/SBMTrees/src/DP_lambda.h | 234 +++ SBMTrees-1.4/SBMTrees/src/RcppExports.cpp | 182 ++ SBMTrees-1.4/SBMTrees/src/bart_model.h | 691 ++++++---- SBMTrees-1.4/SBMTrees/src/bm.h |only SBMTrees-1.4/SBMTrees/src/bmlmm.h |only SBMTrees-1.4/SBMTrees/src/bmtrees.h | 609 --------- SBMTrees-1.4/SBMTrees/src/cal_random_effects.h | 161 ++ SBMTrees-1.4/SBMTrees/src/sequential_imputation.cpp | 887 +++++++++++-- SBMTrees-1.4/SBMTrees/src/update_B.h | 21 SBMTrees-1.4/SBMTrees/src/utils.h | 123 + SBMTrees-1.4/SBMTrees/vignettes/SBMTrees_Introduction.Rmd | 101 - 50 files changed, 4269 insertions(+), 2927 deletions(-)
Title: Functions for Generating Restricted Permutations of Data
Description: A set of restricted permutation designs for freely exchangeable, line transects (time series), and spatial grid designs plus permutation of blocks (groups of samples) is provided. 'permute' also allows split-plot designs, in which the whole-plots or split-plots or both can be freely-exchangeable or one of the restricted designs. The 'permute' package is modelled after the permutation schemes of 'Canoco 3.1' (and later) by Cajo ter Braak.
Author: Gavin L. Simpson [aut, cph, cre] ,
R Core Team [cph],
Douglas M. Bates [ctb],
Jari Oksanen [ctb]
Maintainer: Gavin L. Simpson <ucfagls@gmail.com>
Diff between permute versions 0.9-8 dated 2025-06-25 and 0.9-10 dated 2026-02-06
permute-0.9-10/permute/DESCRIPTION | 8 - permute-0.9-10/permute/MD5 | 22 ++--- permute-0.9-10/permute/NEWS.md |only permute-0.9-10/permute/R/numPerms.R | 6 - permute-0.9-10/permute/build/vignette.rds |binary permute-0.9-10/permute/inst/doc/permutations.R | 2 permute-0.9-10/permute/inst/doc/permutations.Rmd | 14 +-- permute-0.9-10/permute/inst/doc/permutations.html | 74 +++++++++--------- permute-0.9-10/permute/man/get-methods.Rd | 2 permute-0.9-10/permute/man/shuffleSet.Rd | 4 permute-0.9-10/permute/tests/testthat/test-numPerms.R | 31 ++++++- permute-0.9-10/permute/vignettes/permutations.Rmd | 14 +-- permute-0.9-8/permute/inst/NEWS |only 13 files changed, 100 insertions(+), 77 deletions(-)
Title: SQLite Interface for R
Description: Embeds the SQLite database engine in R and provides an
interface compliant with the DBI package. The source for the SQLite
engine (version 3.51.2) and for various extensions is included.
System libraries will never be consulted because this package relies
on static linking for the plugins it includes; this also ensures a
consistent experience across all installations.
Author: Kirill Mueller [aut, cre] ,
Hadley Wickham [aut],
David A. James [aut],
Seth Falcon [aut],
D. Richard Hipp [ctb] ,
Dan Kennedy [ctb] ,
Joe Mistachkin [ctb] ,
SQLite Authors [ctb] ,
Liam Healy [ctb] ,
R Consortium [fnd],
RStudio [cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between RSQLite versions 2.4.5 dated 2025-11-30 and 2.4.6 dated 2026-02-06
DESCRIPTION | 12 +- MD5 | 92 ++++++++--------- NEWS.md | 13 ++ R/cpp11.R | 4 build/vignette.rds |binary src/DbColumn.cpp | 46 +++++--- src/DbColumn.h | 10 + src/DbColumnDataSource.cpp | 8 - src/DbColumnDataSource.h | 2 src/DbColumnDataSourceFactory.cpp | 6 - src/DbColumnDataSourceFactory.h | 2 src/DbColumnDataType.h | 2 src/DbColumnStorage.cpp | 91 ++++++++++------ src/DbColumnStorage.h | 11 +- src/DbConnection.cpp | 41 ++++--- src/DbConnection.h | 14 +- src/DbDataFrame.cpp | 48 ++++++-- src/DbDataFrame.h | 13 +- src/DbResult.cpp | 19 +-- src/DbResult.h | 3 src/RSQLite.h | 2 src/RSQLite_types.h | 15 +- src/SqliteColumnDataSource.cpp | 128 ++++++++++++----------- src/SqliteColumnDataSource.h | 9 + src/SqliteColumnDataSourceFactory.cpp | 13 +- src/SqliteColumnDataSourceFactory.h | 2 src/SqliteDataFrame.cpp | 22 ++-- src/SqliteDataFrame.h | 11 +- src/SqliteResult.cpp | 13 +- src/SqliteResult.h | 5 src/SqliteResultImpl.cpp | 183 ++++++++++++++++------------------ src/SqliteResultImpl.h | 5 src/affinity.c | 83 ++++++++------- src/affinity.h | 14 +- src/connection.cpp | 70 ++++++++----- src/cpp11.cpp | 9 - src/ext-math.c | 3 src/extensions.cpp | 14 ++ src/import-file.c | 92 +++++++++-------- src/integer64.h | 2 src/result.cpp | 8 - src/rsqlite.cpp | 13 -- src/sqlite3-cpp.h | 4 src/vendor/extensions/csv.c | 16 +- src/vendor/extensions/regexp.c | 28 +++-- src/vendor/sqlite3/sqlite3.c | 160 ++++++++++++++++++----------- src/vendor/sqlite3/sqlite3.h | 10 - 47 files changed, 777 insertions(+), 594 deletions(-)
Title: An 'Rcpp' Interface to Active Bindings
Description: Provides an easy way to fill an environment with active
bindings that call a C++ function.
Author: Kirill Mueller [aut, cre] ,
RStudio [cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between bindrcpp versions 0.2.3 dated 2023-12-11 and 0.2.4 dated 2026-02-06
bindrcpp-0.2.3/bindrcpp/man/init_logging.Rd |only bindrcpp-0.2.3/bindrcpp/src/plogr.cpp |only bindrcpp-0.2.4/bindrcpp/DESCRIPTION | 15 +- bindrcpp-0.2.4/bindrcpp/MD5 | 16 +-- bindrcpp-0.2.4/bindrcpp/NEWS.md | 9 + bindrcpp-0.2.4/bindrcpp/R/RcppExports.R | 13 -- bindrcpp-0.2.4/bindrcpp/man/bindrcpp-package.Rd | 2 bindrcpp-0.2.4/bindrcpp/src/RcppExports.cpp | 35 ++---- bindrcpp-0.2.4/bindrcpp/src/create.cpp | 122 +++++++++++++++++++----- bindrcpp-0.2.4/bindrcpp/src/test.cpp | 92 +++++++++++------- 10 files changed, 195 insertions(+), 109 deletions(-)
Title: Focus-Glue-Context Fisheye Transformations for Spatial
Visualization
Description: Focus-glue-context (FGC) fisheye transformations to two-dimensional coordinates and spatial vector geometries. Implements a smooth radial distortion that enlarges a focal region, transitions through a glue ring, and preserves outside context. Methods build on generalized fisheye views and focus+context mapping. For more details see Furnas (1986) <doi:10.1145/22339.22342>, Furnas (2006) <doi:10.1145/1124772.1124921> and Yamamoto et al. (2009) <doi:10.1145/1653771.1653788>.
Author: Alex Nguyen [aut, cre, cph],
Dianne Cook [aut] ,
Michael Lydeamore [aut]
Maintainer: Alex Nguyen <thanhcuong10091992@gmail.com>
Diff between mapycusmaximus versions 1.0.0 dated 2025-12-19 and 1.0.7 dated 2026-02-06
mapycusmaximus-1.0.0/mapycusmaximus/inst/doc/Mapycus.R |only mapycusmaximus-1.0.0/mapycusmaximus/inst/doc/Mapycus.Rmd |only mapycusmaximus-1.0.0/mapycusmaximus/inst/doc/Mapycus.html |only mapycusmaximus-1.0.0/mapycusmaximus/vignettes/Mapycus.Rmd |only mapycusmaximus-1.0.7/mapycusmaximus/DESCRIPTION | 11 mapycusmaximus-1.0.7/mapycusmaximus/MD5 | 38 + mapycusmaximus-1.0.7/mapycusmaximus/NAMESPACE | 71 +-- mapycusmaximus-1.0.7/mapycusmaximus/NEWS.md | 23 + mapycusmaximus-1.0.7/mapycusmaximus/R/fisheye_fgc.R | 2 mapycusmaximus-1.0.7/mapycusmaximus/R/sf_fisheye.R | 23 - mapycusmaximus-1.0.7/mapycusmaximus/R/shiny_fisheye.R |only mapycusmaximus-1.0.7/mapycusmaximus/R/utils.R | 217 ++++++++++ mapycusmaximus-1.0.7/mapycusmaximus/build/vignette.rds |binary mapycusmaximus-1.0.7/mapycusmaximus/data/conn_fish.rda |binary mapycusmaximus-1.0.7/mapycusmaximus/data/vic.rda |binary mapycusmaximus-1.0.7/mapycusmaximus/data/vic_fish.rda |binary mapycusmaximus-1.0.7/mapycusmaximus/inst/doc/mapycusmaximus-vignette.R |only mapycusmaximus-1.0.7/mapycusmaximus/inst/doc/mapycusmaximus-vignette.Rmd |only mapycusmaximus-1.0.7/mapycusmaximus/inst/doc/mapycusmaximus-vignette.html |only mapycusmaximus-1.0.7/mapycusmaximus/inst/shiny_app |only mapycusmaximus-1.0.7/mapycusmaximus/man/fisheye_fgc.Rd | 150 +++--- mapycusmaximus-1.0.7/mapycusmaximus/man/lines_from_sf.Rd |only mapycusmaximus-1.0.7/mapycusmaximus/man/points_from_sf.Rd |only mapycusmaximus-1.0.7/mapycusmaximus/man/polygons_from_sf.Rd |only mapycusmaximus-1.0.7/mapycusmaximus/man/sf_fisheye.Rd | 11 mapycusmaximus-1.0.7/mapycusmaximus/man/shiny_fisheye.Rd |only mapycusmaximus-1.0.7/mapycusmaximus/vignettes/mapycusmaximus-vignette.Rmd |only 27 files changed, 387 insertions(+), 159 deletions(-)
More information about mapycusmaximus at CRAN
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Title: Evaluation of Tweedie Exponential Family Models
Description: Maximum likelihood computations for Tweedie families, including the series expansion (Dunn and Smyth, 2005; <doi:10.1007/s11222-005-4070-y>) and the Fourier inversion (Dunn and Smyth, 2008; <doi:10.1007/s11222-007-9039-6>), and related methods.
Author: Peter K. Dunn [cre, aut]
Maintainer: Peter K. Dunn <pdunn2@usc.edu.au>
Diff between tweedie versions 2.3.5 dated 2022-08-17 and 3.0.10 dated 2026-02-06
tweedie-2.3.5/tweedie/R/tweedie.R |only tweedie-2.3.5/tweedie/man/AICtweedie.Rd |only tweedie-2.3.5/tweedie/man/dtweedie.Rd |only tweedie-2.3.5/tweedie/man/dtweedie.dldphi.Rd |only tweedie-2.3.5/tweedie/man/dtweedie.saddle.Rd |only tweedie-2.3.5/tweedie/man/logLik.tweedie.Rd |only tweedie-2.3.5/tweedie/man/tweedie-internal.Rd |only tweedie-2.3.5/tweedie/man/tweedie.convert.Rd |only tweedie-2.3.5/tweedie/man/tweedie.dev.Rd |only tweedie-2.3.5/tweedie/man/tweedie.plot.Rd |only tweedie-2.3.5/tweedie/man/tweedie.profile.Rd |only tweedie-2.3.5/tweedie/src/tweedie.f |only tweedie-3.0.10/tweedie/DESCRIPTION | 22 +-- tweedie-3.0.10/tweedie/MD5 | 102 +++++++++++--- tweedie-3.0.10/tweedie/NAMESPACE | 67 +++++++-- tweedie-3.0.10/tweedie/NEWS.md | 67 ++++++++- tweedie-3.0.10/tweedie/R/dtweedie_interpolation.R |only tweedie-3.0.10/tweedie/R/dtweedie_inversion.R |only tweedie-3.0.10/tweedie/R/dtweedie_saddle.R |only tweedie-3.0.10/tweedie/R/dtweedie_series.R |only tweedie-3.0.10/tweedie/R/logLiktweedie.R |only tweedie-3.0.10/tweedie/R/ptweedie_inversion.R |only tweedie-3.0.10/tweedie/R/ptweedie_series.R |only tweedie-3.0.10/tweedie/R/tweedie-internals.R |only tweedie-3.0.10/tweedie/R/tweedie-package.R |only tweedie-3.0.10/tweedie/R/tweedie_AIC.R |only tweedie-3.0.10/tweedie/R/tweedie_convert.R |only tweedie-3.0.10/tweedie/R/tweedie_dev.R |only tweedie-3.0.10/tweedie/R/tweedie_dpqr.R |only tweedie-3.0.10/tweedie/R/tweedie_integrand.R |only tweedie-3.0.10/tweedie/R/tweedie_lambda.R |only tweedie-3.0.10/tweedie/R/tweedie_plot.R |only tweedie-3.0.10/tweedie/R/tweedie_profile.R |only tweedie-3.0.10/tweedie/R/utils.R |only tweedie-3.0.10/tweedie/R/zzz.R |only tweedie-3.0.10/tweedie/README.md |only tweedie-3.0.10/tweedie/build/partial.rdb |binary tweedie-3.0.10/tweedie/build/vignette.rds |only tweedie-3.0.10/tweedie/cleanup |only tweedie-3.0.10/tweedie/configure |only tweedie-3.0.10/tweedie/configure.win |only tweedie-3.0.10/tweedie/inst/CITATION | 18 +- tweedie-3.0.10/tweedie/inst/doc |only tweedie-3.0.10/tweedie/man/Tweedie.Rd |only tweedie-3.0.10/tweedie/man/dtweedie_inversion.Rd |only tweedie-3.0.10/tweedie/man/dtweedie_saddle.Rd |only tweedie-3.0.10/tweedie/man/dtweedie_series.Rd |only tweedie-3.0.10/tweedie/man/figures |only tweedie-3.0.10/tweedie/man/logLiktweedie.Rd |only tweedie-3.0.10/tweedie/man/ptweedie_inversion.Rd |only tweedie-3.0.10/tweedie/man/ptweedie_series.Rd |only tweedie-3.0.10/tweedie/man/tweedie-package.Rd | 83 +---------- tweedie-3.0.10/tweedie/man/tweedie_AIC.Rd |only tweedie-3.0.10/tweedie/man/tweedie_convert.Rd |only tweedie-3.0.10/tweedie/man/tweedie_dev.Rd |only tweedie-3.0.10/tweedie/man/tweedie_integrand.Rd |only tweedie-3.0.10/tweedie/man/tweedie_lambda.Rd |only tweedie-3.0.10/tweedie/man/tweedie_plot.Rd |only tweedie-3.0.10/tweedie/man/tweedie_profile.Rd |only tweedie-3.0.10/tweedie/src/00tweedie_params.f90 |only tweedie-3.0.10/tweedie/src/Calcs_Imag.f90 |only tweedie-3.0.10/tweedie/src/Calcs_K.f90 |only tweedie-3.0.10/tweedie/src/Calcs_Real.f90 |only tweedie-3.0.10/tweedie/src/Calcs_Solvers.f90 |only tweedie-3.0.10/tweedie/src/GaussQuadrature.f90 |only tweedie-3.0.10/tweedie/src/Integrands.f90 |only tweedie-3.0.10/tweedie/src/Makevars-Working.makefile |only tweedie-3.0.10/tweedie/src/Makevars-WorksOnLinux.makefile |only tweedie-3.0.10/tweedie/src/Makevars-workingOnMac.makefile |only tweedie-3.0.10/tweedie/src/Makevars.in |only tweedie-3.0.10/tweedie/src/Makevars.win |only tweedie-3.0.10/tweedie/src/R_interfaces.f90 |only tweedie-3.0.10/tweedie/src/Rprintf_wrapper.c |only tweedie-3.0.10/tweedie/src/TweedieIntZones.f90 |only tweedie-3.0.10/tweedie/src/TweedieIntegration.f90 |only tweedie-3.0.10/tweedie/src/TweedieIntegration.f90HIDING |only tweedie-3.0.10/tweedie/src/accelerate.f90 |only tweedie-3.0.10/tweedie/src/findAccelStart.f90 |only tweedie-3.0.10/tweedie/src/gaussianData.f90 |only tweedie-3.0.10/tweedie/src/init.c | 26 +-- tweedie-3.0.10/tweedie/src/rprintf_mod.f90 |only tweedie-3.0.10/tweedie/src/twcomputation.f90 |only tweedie-3.0.10/tweedie/src/twcomputation_main.f90 |only tweedie-3.0.10/tweedie/tests |only tweedie-3.0.10/tweedie/vignettes |only 85 files changed, 245 insertions(+), 140 deletions(-)
Title: Solvers for Initial Value Problems of Differential Equations
('ODE', 'DAE', 'DDE')
Description: Functions that solve initial value problems of a system
of first-order ordinary differential equations ('ODE'), of
partial differential equations ('PDE'), of differential
algebraic equations ('DAE'), and of delay differential
equations. The functions provide an interface to the FORTRAN
functions 'lsoda', 'lsodar', 'lsode', 'lsodes' of the 'ODEPACK'
collection, to the FORTRAN functions 'dvode', 'zvode' and 'daspk'
and a C-implementation of solvers of the 'Runge-Kutta' family with
fixed or variable time steps. The package contains routines
designed for solving 'ODEs' resulting from 1-D, 2-D and 3-D
partial differential equations ('PDE') that have been converted
to 'ODEs' by numerical differencing.
Author: Karline Soetaert [aut] ,
Thomas Petzoldt [aut, cre] ,
R. Woodrow Setzer [aut] ,
Peter N. Brown [ctb] ,
George D. Byrne [ctb] ,
Ernst Hairer [ctb] ,
Alan C. Hindmarsh [ctb] ,
Cleve Moler [ctb] ,
Linda R. Petzold [ctb] ,
Youcef Saad [ctb] ,
Clement W. [...truncated...]
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Diff between deSolve versions 1.40 dated 2023-11-27 and 1.41 dated 2026-02-06
DESCRIPTION | 18 MD5 | 74 - NEWS.md | 6 R/DLLfunc.R | 358 +++--- R/checkevents.R | 382 +++--- R/cleanEventTimes.R | 58 - R/daspk.R | 1112 +++++++++---------- R/diagnostics.R | 376 +++--- R/euler.R | 300 ++--- R/forcings.R | 314 ++--- R/lsoda.R | 8 R/lsodar.R | 10 R/lsode.R | 652 +++++------ R/lsodes.R | 844 +++++++-------- R/matplot.R | 754 ++++++------- R/radau.R | 644 +++++------ R/rk.R | 472 ++++---- R/rk4.R | 216 +-- R/rkMethod.R | 780 ++++++------- build/partial.rdb |binary build/vignette.rds |binary data/ccl4data.rda |binary inst/CITATION | 44 inst/doc/compiledCode.R | 706 ++++++------ inst/doc/compiledCode.Rnw | 36 inst/doc/compiledCode.pdf |binary inst/doc/deSolve.R | 2074 ++++++++++++++++++------------------- inst/doc/deSolve.Rnw | 9 inst/doc/deSolve.pdf |binary inst/doc/dynload-dede/dede_lv.R | 124 +- inst/doc/dynload-dede/dede_lv2.R | 178 +-- inst/doc/dynload-dede/dedesimple.R | 122 +- inst/doc/dynload/radaudaedll.R | 160 +- man/deSolve.Rd | 6 man/rkMethod.Rd | 606 +++++----- vignettes/compiledCode.Rnw | 36 vignettes/deSolve.Rnw | 9 vignettes/integration.bib | 113 -- 38 files changed, 5805 insertions(+), 5796 deletions(-)
Title: Simulate and Plot Estimates from Cox Proportional Hazards Models
Description: Simulates and plots quantities of interest (relative
hazards, first differences, and hazard ratios) for linear coefficients,
multiplicative interactions, polynomials, penalised splines, and
non-proportional hazards, as well as stratified survival curves from Cox
Proportional Hazard models. It also simulates and plots marginal effects
for multiplicative interactions. Methods described in Gandrud (2015)
<doi:10.18637/jss.v065.i03>.
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>
Diff between simPH versions 1.3.14 dated 2025-04-18 and 1.3.15 dated 2026-02-06
simPH-1.3.14/simPH/data/CarpenterFdaData.tab |only simPH-1.3.14/simPH/data/GolubEUPData.tab |only simPH-1.3.15/simPH/DESCRIPTION | 16 ++--- simPH-1.3.15/simPH/MD5 | 32 +++++------ simPH-1.3.15/simPH/NAMESPACE | 8 -- simPH-1.3.15/simPH/NEWS | 10 +++ simPH-1.3.15/simPH/R/IntervalConstrict.R | 4 - simPH-1.3.15/simPH/R/MinMaxLines.R | 10 +-- simPH-1.3.15/simPH/R/coxsimPoly.R | 5 - simPH-1.3.15/simPH/README.md | 4 - simPH-1.3.15/simPH/build/partial.rdb |binary simPH-1.3.15/simPH/data/CarpenterFdaData.tab.gz |only simPH-1.3.15/simPH/data/GolubEUPData.tab.gz |only simPH-1.3.15/simPH/man/coxsimInteract.Rd | 2 simPH-1.3.15/simPH/man/coxsimLinear.Rd | 2 simPH-1.3.15/simPH/man/coxsimPoly.Rd | 2 simPH-1.3.15/simPH/man/coxsimSpline.Rd | 2 simPH-1.3.15/simPH/man/coxsimtvc.Rd | 2 simPH-1.3.15/simPH/tests/testthat/test-MinMaxLines.R |only simPH-1.3.15/simPH/tests/testthat/test-dplyr-compatibility.R |only 20 files changed, 51 insertions(+), 48 deletions(-)
Title: GroundWater Spatiotemporal Data Analysis Tool (GWSDAT)
Description: Shiny application for the analysis of groundwater
monitoring data, designed to work with simple time-series data for
solute concentration and ground water elevation, but can also plot
non-aqueous phase liquid (NAPL) thickness if required. Also provides
the import of a site basemap in GIS shapefile format.
Author: Wayne Jones [aut, cre]
Maintainer: Wayne Jones <wayne.w.jones@shell.com>
Diff between GWSDAT versions 3.2.1 dated 2024-03-04 and 3.3.0 dated 2026-02-06
GWSDAT-3.2.1/GWSDAT/inst/extdata/GWSDAT-v3.10.xlam |only GWSDAT-3.2.1/GWSDAT/inst/extdata/GWSDAT-v3.12.xlam |only GWSDAT-3.2.1/GWSDAT/inst/extdata/GWSDAT-v3.20.xlam |only GWSDAT-3.3.0/GWSDAT/DESCRIPTION | 15 GWSDAT-3.3.0/GWSDAT/MD5 | 133 GWSDAT-3.3.0/GWSDAT/NAMESPACE | 90 GWSDAT-3.3.0/GWSDAT/NEWS.md | 130 GWSDAT-3.3.0/GWSDAT/R/WellRedundancyUtils.R | 28 GWSDAT-3.3.0/GWSDAT/R/aggregateData.R | 205 GWSDAT-3.3.0/GWSDAT/R/calcGWFlow.R | 164 GWSDAT-3.3.0/GWSDAT/R/calcTrafficLights.R | 428 GWSDAT-3.3.0/GWSDAT/R/createOptions.R | 132 GWSDAT-3.3.0/GWSDAT/R/fitData.R | 166 GWSDAT-3.3.0/GWSDAT/R/fitPSpline.R | 648 GWSDAT-3.3.0/GWSDAT/R/global.R | 38 GWSDAT-3.3.0/GWSDAT/R/importTables.R | 316 GWSDAT-3.3.0/GWSDAT/R/interpBary.R | 219 GWSDAT-3.3.0/GWSDAT/R/interpConc.R | 347 GWSDAT-3.3.0/GWSDAT/R/jobqueue.R | 386 GWSDAT-3.3.0/GWSDAT/R/launchApp.R | 136 GWSDAT-3.3.0/GWSDAT/R/plotPlumeTimeSeries.R | 704 GWSDAT-3.3.0/GWSDAT/R/plotSTPredictions.R | 494 GWSDAT-3.3.0/GWSDAT/R/plotSpatialImage.R | 1424 - GWSDAT-3.3.0/GWSDAT/R/plotTimeSeries.R | 1046 - GWSDAT-3.3.0/GWSDAT/R/plotTrendTable.R | 690 GWSDAT-3.3.0/GWSDAT/R/plotWellReport.R | 492 GWSDAT-3.3.0/GWSDAT/R/plumeDiagnostics.R | 538 GWSDAT-3.3.0/GWSDAT/R/ppt.R | 220 GWSDAT-3.3.0/GWSDAT/R/predictValues.R | 80 GWSDAT-3.3.0/GWSDAT/R/processData.R | 972 - GWSDAT-3.3.0/GWSDAT/R/readData.R | 648 GWSDAT-3.3.0/GWSDAT/R/selectGamma.R | 232 GWSDAT-3.3.0/GWSDAT/R/server.R | 7599 +++++----- GWSDAT-3.3.0/GWSDAT/R/shapeFiles.R | 286 GWSDAT-3.3.0/GWSDAT/R/ui.R | 354 GWSDAT-3.3.0/GWSDAT/R/uiAnalyse.R | 86 GWSDAT-3.3.0/GWSDAT/R/uiAnalyseOptions.R | 264 GWSDAT-3.3.0/GWSDAT/R/uiAttr.R | 302 GWSDAT-3.3.0/GWSDAT/R/uiCustomColourKey.R | 64 GWSDAT-3.3.0/GWSDAT/R/uiDataManager.R | 794 - GWSDAT-3.3.0/GWSDAT/R/uiLogsJobs.R | 38 GWSDAT-3.3.0/GWSDAT/R/uiPlumeDiagnostics.R | 106 GWSDAT-3.3.0/GWSDAT/R/uiSTPredictions.R | 88 GWSDAT-3.3.0/GWSDAT/R/uiSession.R | 51 GWSDAT-3.3.0/GWSDAT/R/uiSpatialImage.R | 296 GWSDAT-3.3.0/GWSDAT/R/uiTimeSeries.R | 125 GWSDAT-3.3.0/GWSDAT/R/uiTrendTable.R | 157 GWSDAT-3.3.0/GWSDAT/R/uiWellReport.R | 84 GWSDAT-3.3.0/GWSDAT/R/user_db.R | 222 GWSDAT-3.3.0/GWSDAT/R/utilities.R | 358 GWSDAT-3.3.0/GWSDAT/inst/application/jqdb_pspline_fit.R | 168 GWSDAT-3.3.0/GWSDAT/inst/application/simple_pspline_fit.R | 66 GWSDAT-3.3.0/GWSDAT/inst/extdata/BasicExample_WellCoords.csv | 24 GWSDAT-3.3.0/GWSDAT/inst/extdata/BasicExample_WellData.csv | 1042 - GWSDAT-3.3.0/GWSDAT/inst/extdata/ComprehensiveExample_WellCoords.csv | 66 GWSDAT-3.3.0/GWSDAT/inst/extdata/ComprehensiveExample_WellData.csv | 3690 ++-- GWSDAT-3.3.0/GWSDAT/inst/extdata/CreatePackageExamples.R |only GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDAT-v3.30.xlam |only GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDAT_Basic_Example.rds |binary GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDAT_Basic_Example_V3.2.rds |only GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDAT_Example.rds |binary GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDAT_Example_V3.2.rds |only GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDAT_Examples.rds |binary GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDAT_Examples_V3.2.rds |only GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDATex2.cpg |only GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDATex2.dbf |only GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDATex2.shp |only GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDATex2.shx |only GWSDAT-3.3.0/GWSDAT/inst/extdata/Old_GWSDAT_Add-ins |only GWSDAT-3.3.0/GWSDAT/inst/www/google-analytics.js | 16 GWSDAT-3.3.0/GWSDAT/inst/www/jump_to_tsplot.js | 14 GWSDAT-3.3.0/GWSDAT/man/createOptions.Rd | 54 GWSDAT-3.3.0/GWSDAT/man/launchApp.Rd | 58 73 files changed, 14014 insertions(+), 13579 deletions(-)
Title: The Research Data Warehouse of Miguel de Carvalho
Description: Pulls together a collection of datasets from Miguel de Carvalho research articles and books. Including, for example:
- de Carvalho (2012) <doi:10.1016/j.jspi.2011.08.016>;
- de Carvalho et al (2012) <doi:10.1080/03610926.2012.709905>;
- de Carvalho et al (2012) <doi:10.1016/j.econlet.2011.09.007>);
- de Carvalho and Davison (2014) <doi:10.1080/01621459.2013.872651>;
- de Carvalho and Rua (2017) <doi:10.1016/j.ijforecast.2015.09.004>;
- de Carvalho et al (2023) <doi:10.1002/sta4.560>;
- de Carvalho et al (2022) <doi:10.1007/s13253-021-00469-9>;
- Palacios et al (2025) <doi:10.1214/24-BA1420>.
Author: Miguel de Carvalho [aut, cre]
Maintainer: Miguel de Carvalho <Miguel.deCarvalho@ed.ac.uk>
Diff between DATAstudio versions 1.2.1 dated 2025-03-29 and 1.2.2 dated 2026-02-06
DATAstudio-1.2.1/DATAstudio/data/california.RData |only DATAstudio-1.2.1/DATAstudio/data/hongkong.RData |only DATAstudio-1.2.1/DATAstudio/data/lisbon.RData |only DATAstudio-1.2.2/DATAstudio/DESCRIPTION | 14 +++--- DATAstudio-1.2.2/DATAstudio/MD5 | 40 +++++++++---------- DATAstudio-1.2.2/DATAstudio/R/dataset.R | 22 +++++++--- DATAstudio-1.2.2/DATAstudio/R/hidden.R | 6 ++ DATAstudio-1.2.2/DATAstudio/inst/CITATION | 2 DATAstudio-1.2.2/DATAstudio/man/DATAstudio.Rd | 38 ++++++++++++------ DATAstudio-1.2.2/DATAstudio/man/GDP.Rd | 2 DATAstudio-1.2.2/DATAstudio/man/GDPIP.Rd | 2 DATAstudio-1.2.2/DATAstudio/man/brainwave.Rd | 6 +- DATAstudio-1.2.2/DATAstudio/man/california.Rd | 12 +++-- DATAstudio-1.2.2/DATAstudio/man/claims.Rd | 2 DATAstudio-1.2.2/DATAstudio/man/dataset.Rd | 4 - DATAstudio-1.2.2/DATAstudio/man/figures/handbook.jpg |only DATAstudio-1.2.2/DATAstudio/man/hongkong.Rd | 11 +++-- DATAstudio-1.2.2/DATAstudio/man/hurricane.Rd | 4 - DATAstudio-1.2.2/DATAstudio/man/lisbon.Rd | 14 ++++-- DATAstudio-1.2.2/DATAstudio/man/marketsUS.Rd | 4 - DATAstudio-1.2.2/DATAstudio/man/sydney.Rd | 8 +-- DATAstudio-1.2.2/DATAstudio/man/unemployment.Rd | 2 DATAstudio-1.2.2/DATAstudio/man/wildfire.Rd | 2 23 files changed, 116 insertions(+), 79 deletions(-)
Title: Cardinal to Ordinal Number & Date Conversion
Description: Language specific cardinal to ordinal number conversion.
Author: Damian W. Betebenner [aut, cre],
Andrew Martin [ctb],
Jeff Erickson [ctb]
Maintainer: Damian W. Betebenner <dbetebenner@nciea.org>
Diff between toOrdinal versions 1.3-0.0 dated 2022-02-24 and 1.4-0.0 dated 2026-02-06
DESCRIPTION | 12 MD5 | 25 + NAMESPACE | 5 R/toOrdinal_Utility_Functions.R | 305 ++++++++++++----------- R/zzz.R | 48 +++ build/vignette.rds |binary inst/CITATION | 27 +- inst/NEWS | 3 inst/doc/toOrdinal.Rmd | 3 inst/doc/toOrdinal.html | 398 ++++++++++++++++++++++++------- man/toOrdinal-package.Rd | 4 tests/testthat/test_toOrdinal_dutch.R | 8 vignettes/releases/toOrdinal-1.3-0.0.Rmd |only vignettes/toOrdinal.Rmd | 3 14 files changed, 564 insertions(+), 277 deletions(-)
Title: Simulate Data from State Space Models
Description: Provides a streamlined and user-friendly framework
for simulating data in state space models,
particularly when the number of subjects/units (n) exceeds one,
a scenario commonly encountered in social and behavioral sciences.
This package was designed to generate data for the simulations
performed in Pesigan, Russell, and Chow (2025) <doi:10.1037/met0000779>.
Author: Ivan Jacob Agaloos Pesigan [aut, cre, cph] ,
Michael A. Russell [ctb] ,
Sy-Miin Chow [ctb]
Maintainer: Ivan Jacob Agaloos Pesigan <r.jeksterslab@gmail.com>
Diff between simStateSpace versions 1.2.14 dated 2026-01-10 and 1.2.15 dated 2026-02-06
DESCRIPTION | 6 - MD5 | 104 +++++++++++------------ NAMESPACE | 2 NEWS.md | 6 + R/RcppExports.R | 10 +- R/simStateSpace-sim-ssm-fixed.R | 2 R/simStateSpace-sim-ssm-lin-sde-fixed.R | 2 R/simStateSpace-sim-ssm-ou-fixed.R | 10 +- R/simStateSpace-sim-ssm-ou-i-vary.R | 4 R/simStateSpace-ssm-intercept-eta.R |only R/simStateSpace-ssm-intercept-y.R |only R/simStateSpace-ssm-mean-y.R | 5 - man/LinSDE2SSM.Rd | 4 man/LinSDECovEta.Rd | 2 man/LinSDECovY.Rd | 2 man/LinSDEMeanEta.Rd | 2 man/LinSDEMeanY.Rd | 2 man/ProjectToHurwitz.Rd | 2 man/ProjectToStability.Rd | 2 man/SSMCovEta.Rd | 2 man/SSMCovY.Rd | 2 man/SSMInterceptEta.Rd |only man/SSMInterceptY.Rd |only man/SSMMeanEta.Rd | 2 man/SSMMeanY.Rd | 2 man/SimAlphaN.Rd | 2 man/SimBetaN.Rd | 2 man/SimBetaN2.Rd | 2 man/SimBetaNCovariate.Rd | 2 man/SimCovDiagN.Rd | 2 man/SimCovN.Rd | 2 man/SimIotaN.Rd | 2 man/SimNuN.Rd | 2 man/SimPhiN.Rd | 2 man/SimPhiN2.Rd | 2 man/SimPhiNCovariate.Rd | 2 man/SimSSMFixed.Rd | 4 man/SimSSMIVary.Rd | 4 man/SimSSMLinGrowth.Rd | 4 man/SimSSMLinGrowthIVary.Rd | 6 + man/SimSSMLinSDEFixed.Rd | 4 man/SimSSMLinSDEIVary.Rd | 4 man/SimSSMOUFixed.Rd | 12 +- man/SimSSMOUIVary.Rd | 12 +- man/SimSSMVARFixed.Rd | 4 man/SimSSMVARIVary.Rd | 4 man/SpectralRadius.Rd | 2 man/TestPhi.Rd | 2 man/TestPhiHurwitz.Rd | 2 man/TestStability.Rd | 2 man/TestStationarity.Rd | 2 src/RcppExports.cpp | 27 +++++ src/source.cpp | 29 ++++++ tests/testthat/test-simStateSpace-ssm-mean-eta.R | 14 +++ tests/testthat/test-simStateSpace-ssm-mean-y.R | 15 +++ 55 files changed, 263 insertions(+), 87 deletions(-)
Title: C++ Interface to PostgreSQL
Description: Fully DBI-compliant C++-backed interface to PostgreSQL
<https://www.postgresql.org/>, an open-source relational database.
Author: Hadley Wickham [aut],
Jeroen Ooms [aut],
Kirill Mueller [aut, cre] ,
RStudio [cph],
R Consortium [fnd],
Tomoaki Nishiyama [ctb]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between RPostgres versions 1.4.8 dated 2025-02-25 and 1.4.9 dated 2026-02-06
RPostgres-1.4.8/RPostgres/src/logging.cpp |only RPostgres-1.4.9/RPostgres/DESCRIPTION | 15 RPostgres-1.4.9/RPostgres/MD5 | 186 +++--- RPostgres-1.4.9/RPostgres/NAMESPACE | 1 RPostgres-1.4.9/RPostgres/NEWS.md | 21 RPostgres-1.4.9/RPostgres/R/PqConnection.R | 99 +++ RPostgres-1.4.9/RPostgres/R/PqResult.R | 40 + RPostgres-1.4.9/RPostgres/R/cpp11.R | 8 RPostgres-1.4.9/RPostgres/R/dbAppendTable_PqConnection.R | 9 RPostgres-1.4.9/RPostgres/R/dbBind_PqResult.R | 4 RPostgres-1.4.9/RPostgres/R/dbColumnInfo_PqResult.R | 6 RPostgres-1.4.9/RPostgres/R/dbConnect_PqDriver.R | 60 +- RPostgres-1.4.9/RPostgres/R/dbConnect_RedshiftDriver.R | 17 RPostgres-1.4.9/RPostgres/R/dbDataType_PqConnection.R | 4 RPostgres-1.4.9/RPostgres/R/dbDataType_PqDriver.R | 4 RPostgres-1.4.9/RPostgres/R/dbExistsTable_PqConnection_Id.R | 6 RPostgres-1.4.9/RPostgres/R/dbExistsTable_PqConnection_character.R | 6 RPostgres-1.4.9/RPostgres/R/dbFetch_PqResult.R | 16 RPostgres-1.4.9/RPostgres/R/dbListFields_PqConnection_character.R | 6 RPostgres-1.4.9/RPostgres/R/dbListObjects_PqConnection_ANY.R | 24 RPostgres-1.4.9/RPostgres/R/dbQuoteIdentifier_PqConnection_Id.R | 6 RPostgres-1.4.9/RPostgres/R/dbQuoteIdentifier_PqConnection_SQL.R | 6 RPostgres-1.4.9/RPostgres/R/dbQuoteIdentifier_PqConnection_character.R | 6 RPostgres-1.4.9/RPostgres/R/dbQuoteLiteral_PqConnection.R | 15 RPostgres-1.4.9/RPostgres/R/dbQuoteString_PqConnection_SQL.R | 6 RPostgres-1.4.9/RPostgres/R/dbQuoteString_PqConnection_character.R | 10 RPostgres-1.4.9/RPostgres/R/dbReadTable_PqConnection_character.R | 23 RPostgres-1.4.9/RPostgres/R/dbRemoveTable_PqConnection_character.R | 18 RPostgres-1.4.9/RPostgres/R/dbSendQuery_PqConnection.R | 11 RPostgres-1.4.9/RPostgres/R/dbUnquoteIdentifier_PqConnection_SQL.R | 17 RPostgres-1.4.9/RPostgres/R/dbWriteTable_PqConnection_character_data.frame.R | 59 +- RPostgres-1.4.9/RPostgres/R/default.R | 6 RPostgres-1.4.9/RPostgres/R/sqlData_PqConnection.R | 4 RPostgres-1.4.9/RPostgres/R/tables.R | 56 +- RPostgres-1.4.9/RPostgres/R/utils.R | 8 RPostgres-1.4.9/RPostgres/build/vignette.rds |binary RPostgres-1.4.9/RPostgres/configure | 7 RPostgres-1.4.9/RPostgres/inst/doc/work-queue.Rmd | 2 RPostgres-1.4.9/RPostgres/inst/doc/work-queue.html | 2 RPostgres-1.4.9/RPostgres/man/postgresExportLargeObject.Rd |only RPostgres-1.4.9/RPostgres/man/postgresImportLargeObject.Rd | 3 RPostgres-1.4.9/RPostgres/src/DbColumn.cpp | 44 + RPostgres-1.4.9/RPostgres/src/DbColumn.h | 10 RPostgres-1.4.9/RPostgres/src/DbColumnDataSource.cpp | 8 RPostgres-1.4.9/RPostgres/src/DbColumnDataSource.h | 2 RPostgres-1.4.9/RPostgres/src/DbColumnDataSourceFactory.cpp | 6 RPostgres-1.4.9/RPostgres/src/DbColumnDataSourceFactory.h | 2 RPostgres-1.4.9/RPostgres/src/DbColumnDataType.h | 2 RPostgres-1.4.9/RPostgres/src/DbColumnStorage.cpp | 88 +-- RPostgres-1.4.9/RPostgres/src/DbColumnStorage.h | 12 RPostgres-1.4.9/RPostgres/src/DbConnection.cpp | 114 ++-- RPostgres-1.4.9/RPostgres/src/DbConnection.h | 11 RPostgres-1.4.9/RPostgres/src/DbDataFrame.cpp | 51 + RPostgres-1.4.9/RPostgres/src/DbDataFrame.h | 13 RPostgres-1.4.9/RPostgres/src/DbResult.cpp | 19 RPostgres-1.4.9/RPostgres/src/DbResult.h | 3 RPostgres-1.4.9/RPostgres/src/Makevars.in | 7 RPostgres-1.4.9/RPostgres/src/PqColumnDataSource.cpp | 58 -- RPostgres-1.4.9/RPostgres/src/PqColumnDataSource.h | 8 RPostgres-1.4.9/RPostgres/src/PqColumnDataSourceFactory.cpp | 13 RPostgres-1.4.9/RPostgres/src/PqColumnDataSourceFactory.h | 7 RPostgres-1.4.9/RPostgres/src/PqDataFrame.cpp | 23 RPostgres-1.4.9/RPostgres/src/PqDataFrame.h | 12 RPostgres-1.4.9/RPostgres/src/PqResult.cpp | 19 RPostgres-1.4.9/RPostgres/src/PqResult.h | 14 RPostgres-1.4.9/RPostgres/src/PqResultImpl.cpp | 271 ++++------ RPostgres-1.4.9/RPostgres/src/PqResultImpl.h | 15 RPostgres-1.4.9/RPostgres/src/PqResultSource.cpp | 6 RPostgres-1.4.9/RPostgres/src/PqResultSource.h | 2 RPostgres-1.4.9/RPostgres/src/PqUtils.cpp | 9 RPostgres-1.4.9/RPostgres/src/RPostgres-init.c | 4 RPostgres-1.4.9/RPostgres/src/RPostgres_types.h | 16 RPostgres-1.4.9/RPostgres/src/connection.cpp | 36 - RPostgres-1.4.9/RPostgres/src/cpp11.cpp | 18 RPostgres-1.4.9/RPostgres/src/encode.cpp | 28 - RPostgres-1.4.9/RPostgres/src/encode.h | 10 RPostgres-1.4.9/RPostgres/src/encrypt.cpp | 3 RPostgres-1.4.9/RPostgres/src/integer64.h | 2 RPostgres-1.4.9/RPostgres/src/pch.h | 3 RPostgres-1.4.9/RPostgres/src/result.cpp | 7 RPostgres-1.4.9/RPostgres/src/vendor/boost/config/compiler/diab.hpp | 1 RPostgres-1.4.9/RPostgres/tests/testthat/helper-DBItest.R | 78 +- RPostgres-1.4.9/RPostgres/tests/testthat/helper-astyle.R | 21 RPostgres-1.4.9/RPostgres/tests/testthat/test-DBItest.R | 5 RPostgres-1.4.9/RPostgres/tests/testthat/test-ImportLargeObject.R | 115 +++- RPostgres-1.4.9/RPostgres/tests/testthat/test-Redshift.R | 4 RPostgres-1.4.9/RPostgres/tests/testthat/test-bigint.R | 15 RPostgres-1.4.9/RPostgres/tests/testthat/test-checkInterrupts.R | 12 RPostgres-1.4.9/RPostgres/tests/testthat/test-dbConnect.R | 19 RPostgres-1.4.9/RPostgres/tests/testthat/test-dbGetQuery.R | 32 - RPostgres-1.4.9/RPostgres/tests/testthat/test-dbQuoteIdentifier.R | 73 +- RPostgres-1.4.9/RPostgres/tests/testthat/test-dbWriteTable.R | 111 +++- RPostgres-1.4.9/RPostgres/tests/testthat/test-timezone.R | 13 RPostgres-1.4.9/RPostgres/tools/winlibs.R | 8 RPostgres-1.4.9/RPostgres/vignettes/work-queue.Rmd | 2 95 files changed, 1469 insertions(+), 813 deletions(-)
Title: Database Interface and MariaDB Driver
Description: Implements a DBI-compliant interface to MariaDB
(<https://mariadb.org/>) and MySQL (<https://www.mysql.com/>)
databases.
Author: Kirill Mueller [aut, cre] ,
Jeroen Ooms [aut] ,
David James [aut],
Saikat DebRoy [aut],
Hadley Wickham [aut],
Jeffrey Horner [aut],
R Consortium [fnd],
RStudio [cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between RMariaDB versions 1.3.4 dated 2025-02-24 and 1.3.5 dated 2026-02-06
DESCRIPTION | 15 +-- MD5 | 60 ++++++------ NEWS.md | 15 ++- R/cpp11.R | 4 configure | 7 - src/CMakeLists.txt | 2 src/DbConnection.cpp | 217 +++++++++++++++++++++++++++++----------------- src/DbConnection.h | 27 +++-- src/DbResult.cpp | 22 ++-- src/DbResult.h | 3 src/Makevars.in | 7 + src/MariaBinding.cpp | 59 +++--------- src/MariaBinding.h | 1 src/MariaResult.cpp | 21 ++-- src/MariaResult.h | 17 ++- src/MariaResultImpl.cpp | 6 - src/MariaResultImpl.h | 2 src/MariaResultPrep.cpp | 108 +++++++++++----------- src/MariaResultSimple.cpp | 36 ++++--- src/MariaRow.cpp | 111 +++++++++-------------- src/MariaTypes.cpp | 36 +++++-- src/MariaTypes.h | 11 +- src/MariaUtils.cpp | 30 +++--- src/MariaUtils.h | 8 + src/RMariaDB_types.h | 16 ++- src/connection.cpp | 24 ++++- src/cpp11.cpp | 9 - src/driver.cpp | 15 --- src/integer64.h | 2 src/pch.h | 2 src/result.cpp | 12 +- 31 files changed, 490 insertions(+), 415 deletions(-)
Title: Tools for the 'Parallel' Package
Description: Miscellaneous utilities for parallelizing large
computations. Alternative to MapReduce.
File splitting and distributed operations such as sort and aggregate.
"Software Alchemy" method for parallelizing most statistical methods,
presented in N. Matloff, Parallel Computation for Data Science,
Chapman and Hall, 2015. Includes a debugging aid.
Author: Norm Matloff [cre, aut],
Clark Fitzgerald [aut],
Reed Davis [aut],
Robin Yancey [aut],
Shunxu Huang [aut],
Alex Rumbaugh [aut],
Hadley Wickham [aut]
Maintainer: Norm Matloff <normmatloff@gmail.com>
Diff between partools versions 1.1.6 dated 2017-04-10 and 1.1.7 dated 2026-02-06
partools-1.1.6/partools/inst/CITATION |only partools-1.1.7/partools/DESCRIPTION | 45 +++++++++++++++++++++---- partools-1.1.7/partools/MD5 | 46 +++++++++++++++++++++----- partools-1.1.7/partools/README.md | 2 - partools-1.1.7/partools/build/vignette.rds |binary partools-1.1.7/partools/inst/doc/partools.pdf |binary partools-1.1.7/partools/man/newadult.Rd | 2 - partools-1.1.7/partools/man/prgeng.Rd | 10 ++--- partools-1.1.7/partools/man/snowdoop.Rd | 5 ++ partools-1.1.7/partools/vignettes/DESCRIPTION |only partools-1.1.7/partools/vignettes/MD5 |only partools-1.1.7/partools/vignettes/NAMESPACE |only partools-1.1.7/partools/vignettes/R |only partools-1.1.7/partools/vignettes/README.md |only partools-1.1.7/partools/vignettes/build |only partools-1.1.7/partools/vignettes/data |only partools-1.1.7/partools/vignettes/inst |only partools-1.1.7/partools/vignettes/man |only partools-1.1.7/partools/vignettes/tests |only 19 files changed, 85 insertions(+), 25 deletions(-)
Title: Multi-Level Vector Autoregression
Description: Estimates the multi-level vector autoregression model on time-series data.
Three network structures are obtained: temporal networks, contemporaneous
networks and between-subjects networks.
Author: Sacha Epskamp [aut, cre],
Marie K. Deserno [aut],
Laura F. Bringmann [aut],
Myrthe Veenman [ctb]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between mlVAR versions 0.5.2 dated 2024-02-01 and 0.5.5 dated 2026-02-06
DESCRIPTION | 14 +++++----- MD5 | 30 +++++++++++----------- NAMESPACE | 5 --- NEWS | 17 ++++++++++++ R/NodeWise.R | 10 +++---- R/S3Methods0.R | 4 +- R/effects.R | 22 ++++------------ R/lmer_murmur.R | 23 +++++++++++++--- R/mlVAR.R | 75 ++++++++++++++++++++++++++++++++++++++++++++++++------- R/mlVAR0.R | 70 +++++++++++++++++++++++++++------------------------ R/mlVARcompare.R | 2 - R/mlVARmodel.R | 14 ++++++---- R/movingWindow.R | 21 ++++++--------- R/parSim.R | 8 ++--- man/mlVAR.Rd | 9 +++++- man/mlVARsim.Rd | 9 +++++- 16 files changed, 214 insertions(+), 119 deletions(-)
Title: 'ggplot2' Based Plots with Statistical Details
Description: Extension of 'ggplot2', 'ggstatsplot' creates graphics with
details from statistical tests included in the plots themselves. It
provides an easier syntax to generate information-rich plots for
statistical analysis of continuous (violin plots, scatterplots,
histograms, dot plots, dot-and-whisker plots) or categorical (pie and
bar charts) data. Currently, it supports the most common types of
statistical approaches and tests: parametric, nonparametric, robust,
and Bayesian versions of t-test/ANOVA, correlation analyses,
contingency table analysis, meta-analysis, and regression analyses.
References: Patil (2021) <doi:10.21105/joss.03236>.
Author: Indrajeet Patil [cre, aut, cph]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between ggstatsplot versions 0.13.4 dated 2025-12-09 and 0.13.5 dated 2026-02-06
DESCRIPTION | 18 +++++++------- MD5 | 20 ++++++++-------- NEWS.md | 6 ++++ R/extract-stats.R | 2 - R/ggbetweenstats-helpers.R | 12 +++++---- R/ggpiestats-ggbarstats-helpers.R | 12 +++++---- README.md | 40 ++++++++++++++++---------------- inst/doc/ggstatsplot.Rmd | 4 --- inst/doc/ggstatsplot.html | 4 --- tests/testthat/test-extract-stats.R | 44 ++++++++++++++++++++++++++++++++++++ vignettes/ggstatsplot.Rmd | 4 --- 11 files changed, 107 insertions(+), 59 deletions(-)
Title: Genetic Analysis Package
Description: As first reported [Zhao, J. H. 2007. "gap: Genetic Analysis Package". J Stat Soft 23(8):1-18.
<doi:10.18637/jss.v023.i08>], it is designed as an integrated package for genetic data
analysis of both population and family data. Currently, it contains functions for
sample size calculations of both population-based and family-based designs, probability
of familial disease aggregation, kinship calculation, statistics in linkage analysis,
and association analysis involving genetic markers including haplotype analysis with or
without environmental covariates. Over years, the package has been developed in-between
many projects hence also in line with the name (gap).
Author: Jing Hua Zhao [aut, cre] ,
Kurt Hornik [ctb],
Brian Ripley [ctb],
Uwe Ligges [ctb],
Achim Zeileis [ctb]
Maintainer: Jing Hua Zhao <jinghuazhao@hotmail.com>
Diff between gap versions 1.6 dated 2024-08-27 and 1.9 dated 2026-02-06
gap-1.6/gap/inst/doc/jss.Rnw |only gap-1.6/gap/inst/doc/jss.pdf |only gap-1.6/gap/vignettes/figure1.jpg |only gap-1.6/gap/vignettes/jss.Rnw |only gap-1.6/gap/vignettes/jss.bib |only gap-1.6/gap/vignettes/jsslogo.jpg |only gap-1.9/gap/ChangeLog | 14 ++++++ gap-1.9/gap/DESCRIPTION | 19 ++++---- gap-1.9/gap/MD5 | 44 ++++++++----------- gap-1.9/gap/R/h2.jags.R | 4 + gap-1.9/gap/R/kin.morgan.R | 2 gap-1.9/gap/R/qtl2dplotly.R | 6 +- gap-1.9/gap/R/qtl3dplotly.R | 6 +- gap-1.9/gap/build/partial.rdb |binary gap-1.9/gap/build/vignette.rds |binary gap-1.9/gap/data/hg18.rda |binary gap-1.9/gap/data/hg19.rda |binary gap-1.9/gap/data/hg38.rda |binary gap-1.9/gap/inst/REFERENCES.bib | 27 +++++------- gap-1.9/gap/inst/doc/gap.R | 2 gap-1.9/gap/inst/doc/gap.Rmd | 2 gap-1.9/gap/inst/doc/gap.html | 83 ++++++++++++++++++++----------------- gap-1.9/gap/inst/doc/shinygap.html | 4 - gap-1.9/gap/man/h2.jags.Rd | 4 + gap-1.9/gap/man/kin.morgan.Rd | 2 gap-1.9/gap/vignettes/gap.Rmd | 2 26 files changed, 123 insertions(+), 98 deletions(-)
Title: Occurrence Data Cleaning
Description: Flags and checks occurrence data that are in Darwin Core
format. The package includes generic functions and data as well as
some that are specific to bees. This package is meant to build upon
and be complimentary to other excellent occurrence cleaning packages,
including 'bdc' and 'CoordinateCleaner'. This package uses datasets
from several sources and particularly from the Discover Life Website,
created by Ascher and Pickering (2020). For further information,
please see the original publication and package website. Publication
- Dorey et al. (2023) <doi:10.1101/2023.06.30.547152> and package
website - Dorey et al. (2023) <https://github.com/jbdorey/BeeBDC>.
Author: James B. Dorey [aut, cre, cph] ,
Robert L. O'Reilly [aut] ,
Silas Bossert [aut] ,
Erica E. Fischer [aut]
Maintainer: James B. Dorey <jbdorey@me.com>
Diff between BeeBDC versions 1.3.2 dated 2026-01-16 and 1.3.3 dated 2026-02-06
DESCRIPTION | 6 ++-- MD5 | 40 +++++++++++++++---------------- NEWS.md | 6 ++++ R/BeeBDCQuery.R | 2 - R/interactiveMapR.R | 4 +++ R/jbd_coordinates_transposed.R | 4 +-- R/jbd_create_figures.R | 7 ++++- R/jbd_get_world_map.R | 4 --- R/repoMerge.R | 5 +++ R/richnessPrepR.R | 4 ++- R/taxadbToBeeBDC.R | 7 ++++- README.md | 34 +++----------------------- inst/CITATION | 18 +++++++++++-- man/interactiveMapR.Rd | 4 +++ man/jbd_coordinates_transposed.Rd | 4 +-- man/jbd_create_figures.Rd | 7 ++++- man/repoMerge.Rd | 5 +++ man/richnessPrepR.Rd | 4 ++- man/taxadbToBeeBDC.Rd | 7 ++++- tests/testthat/test-jbd_create_figures.R | 1 tests/testthat/test-richnessPrepR.R | 2 - 21 files changed, 103 insertions(+), 72 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-01-17 0.5.4
2025-06-25 0.5.3
2025-06-23 0.5.2
2025-01-15 0.4.0
2024-06-04 0.3.7
2024-05-27 0.3.6
2023-06-12 0.3.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-02-19 0.1.3