Title: Characterise Transitions in Test Result Status in Longitudinal
Studies
Description: Analyse data from longitudinal studies to characterise changes in values of
semi-quantitative outcome variables within individual subjects, using high performance C++
code to enable rapid processing of large datasets. A flexible methodology is available for
codifying these state transitions.
Author: Mark Eisler [aut, cre, cph] ,
Ana Rabaza [aut]
Maintainer: Mark Eisler <mark.eisler@bristol.ac.uk>
Diff between Transition versions 1.0.1 dated 2025-08-29 and 1.0.2 dated 2026-02-11
DESCRIPTION | 10 ++++---- MD5 | 21 +++++++++++------- NEWS.md | 10 ++++++++ R/RcppExports.R | 55 +++++------------------------------------------ build/partial.rdb |binary build/vignette.rds |only inst |only man/PreviousDate.Rd | 50 ++----------------------------------------- man/PreviousResult.Rd | 2 - man/Transitions.Rd | 3 +- src/transition.cpp | 58 ++++++-------------------------------------------- vignettes |only 12 files changed, 47 insertions(+), 162 deletions(-)
Title: Synthesise and Correlate Likert Scale and Rating-Scale Data
Based on Summary Statistics
Description: Generate and correlate synthetic Likert and rating-scale data
with predefined means, standard deviations, Cronbach's Alpha, Factor
Loading table, coefficients, and other summary statistics.
Worked examples and documentation are available in the package
articles, accessible via the package website,
<https://winzarh.github.io/LikertMakeR/>.
Author: Hume Winzar [cre, aut]
Maintainer: Hume Winzar <winzar@gmail.com>
Diff between LikertMakeR versions 1.3.0 dated 2025-11-25 and 1.4.0 dated 2026-02-11
LikertMakeR-1.3.0/LikertMakeR/R/makeItems.R |only LikertMakeR-1.3.0/LikertMakeR/man/makeItems.Rd |only LikertMakeR-1.3.0/LikertMakeR/tests/testthat/test-makeItems.R |only LikertMakeR-1.3.0/LikertMakeR/vignettes/references.bib |only LikertMakeR-1.4.0/LikertMakeR/DESCRIPTION | 12 LikertMakeR-1.4.0/LikertMakeR/MD5 | 49 LikertMakeR-1.4.0/LikertMakeR/NAMESPACE | 4 LikertMakeR-1.4.0/LikertMakeR/NEWS.md | 38 LikertMakeR-1.4.0/LikertMakeR/R/correlateScales.R | 496 +- LikertMakeR-1.4.0/LikertMakeR/R/lfast.R | 258 - LikertMakeR-1.4.0/LikertMakeR/R/makeCorrAlpha.R | 2 LikertMakeR-1.4.0/LikertMakeR/R/reliability.R |only LikertMakeR-1.4.0/LikertMakeR/README.md | 1283 ----- LikertMakeR-1.4.0/LikertMakeR/build/vignette.rds |binary LikertMakeR-1.4.0/LikertMakeR/inst/doc/LikertMakeR_vignette.R | 64 LikertMakeR-1.4.0/LikertMakeR/inst/doc/LikertMakeR_vignette.Rmd | 194 LikertMakeR-1.4.0/LikertMakeR/inst/doc/LikertMakeR_vignette.html | 2171 +++++----- LikertMakeR-1.4.0/LikertMakeR/inst/doc/lfast_infographic.R |only LikertMakeR-1.4.0/LikertMakeR/inst/doc/lfast_infographic.Rmd |only LikertMakeR-1.4.0/LikertMakeR/inst/doc/lfast_infographic.html |only LikertMakeR-1.4.0/LikertMakeR/inst/doc/reliability_measures.R |only LikertMakeR-1.4.0/LikertMakeR/inst/doc/reliability_measures.Rmd |only LikertMakeR-1.4.0/LikertMakeR/inst/doc/reliability_measures.html |only LikertMakeR-1.4.0/LikertMakeR/man/correlateScales.Rd | 9 LikertMakeR-1.4.0/LikertMakeR/man/makeCorrAlpha.Rd | 2 LikertMakeR-1.4.0/LikertMakeR/man/ordinal_diagnostics.Rd |only LikertMakeR-1.4.0/LikertMakeR/man/print.likert_reliability.Rd |only LikertMakeR-1.4.0/LikertMakeR/man/reliability.Rd |only LikertMakeR-1.4.0/LikertMakeR/tests/testthat/test-reliability-basic.R |only LikertMakeR-1.4.0/LikertMakeR/tests/testthat/test-reliability-options.R |only LikertMakeR-1.4.0/LikertMakeR/vignettes/LikertMakeR_vignette.Rmd | 194 LikertMakeR-1.4.0/LikertMakeR/vignettes/img/lfast_infographic.png |only LikertMakeR-1.4.0/LikertMakeR/vignettes/img/lfast_infographic_t.png |only LikertMakeR-1.4.0/LikertMakeR/vignettes/lfast_infographic.Rmd |only LikertMakeR-1.4.0/LikertMakeR/vignettes/references_2.bib |only LikertMakeR-1.4.0/LikertMakeR/vignettes/reliability_measures.Rmd |only 36 files changed, 2056 insertions(+), 2720 deletions(-)
Title: Cognitive Diagnostic Computerized Adaptive Testing
Description: Provides a set of functions for conducting cognitive diagnostic computerized adaptive testing applications (Chen, 2009) <DOI:10.1007/s11336-009-9123-2>). It includes different item selection rules such us the global discrimination index (Kaplan, de la Torre, and Barrada (2015) <DOI:10.1177/0146621614554650>) and the nonparametric selection method (Chang, Chiu, and Tsai (2019) <DOI:10.1177/0146621618813113>), as well as several stopping rules. Functions for generating item banks and responses are also provided. To guide item bank calibration, model comparison at the item level can be conducted using the two-step likelihood ratio test statistic by Sorrel, de la Torre, Abad and Olea (2017) <DOI:10.1027/1614-2241/a000131>.
Author: Miguel A. Sorrel [aut, cre, cph],
Pablo Najera [aut, cph],
Francisco J. Abad [aut, cph]
Maintainer: Miguel A. Sorrel <miguel.sorrel@uam.es>
Diff between cdcatR versions 1.0.6 dated 2022-05-25 and 1.0.7 dated 2026-02-11
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS.md | 42 +++++++++++++++++++++++------------------- R/helper.R | 4 ++-- 4 files changed, 33 insertions(+), 29 deletions(-)
Title: Trust Region Optimization
Description: Does local optimization using two derivatives and trust regions.
Guaranteed to converge to local minimum of objective function.
Author: Charles J. Geyer [aut, cre]
Maintainer: Charles J. Geyer <geyer@umn.edu>
Diff between trust versions 0.1-8 dated 2020-01-10 and 0.1-9 dated 2026-02-11
ChangeLog | 2 ++ DESCRIPTION | 18 +++++++++++------- MD5 | 16 ++++++++-------- build/vignette.rds |binary inst/doc/trust.pdf |binary tests/bar.R | 2 ++ tests/bar.Rout.save | 11 ++++++++--- tests/baz.R | 2 ++ tests/baz.Rout.save | 11 ++++++++--- 9 files changed, 41 insertions(+), 21 deletions(-)
Title: Density and Abundance from Distance-Sampling Surveys
Description: Distance-sampling (<doi:10.1007/978-3-319-19219-2>)
is a field survey and analytical method that estimates density and
abundance of survey targets (e.g., animals) when
detection probability declines with observation distance.
Distance-sampling is popular in ecology,
especially when survey targets are observed from aerial platforms (e.g.,
airplane or drone), surface vessels (e.g., boat or truck), or along
walking transects. Analysis involves fitting smooth (parametric) curves to
histograms of observation distances and using those functions to
adjust density estimates for missed targets. Routines included here
fit curves to observation distance histograms, estimate effective
sampling area, density of targets in surveyed areas, and the abundance
of targets in a surrounding study area. Confidence interval estimation
uses built-in bootstrap resampling. Help files are extensive and have been
vetted by multiple authors. Many tutorials are available on the package's
website (URL below).
Author: Trent McDonald [cre, aut],
Jason Carlisle [aut],
Aidan McDonald [aut] ,
Ryan Nielson [ctb] ,
Ben Augustine [ctb] ,
James Griswald [ctb] ,
Patrick McKann [ctb] ,
Lacey Jeroue [ctb] ,
Hoffman Abigail [ctb] ,
Kleinsausser Michael [ctb] ,
Joel Reynolds [ [...truncated...]
Maintainer: Trent McDonald <trent@mcdonalddatasciences.com>
Diff between Rdistance versions 4.3.0 dated 2026-01-09 and 4.3.1 dated 2026-02-11
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 11 +++++++++++ R/ESW.r | 3 +++ R/parseModel.R | 2 +- man/parseModel.Rd | 2 +- 6 files changed, 25 insertions(+), 11 deletions(-)
Title: Powerful 'SAS' Inspired Concepts for more Efficient Bigger
Outputs
Description: The main goal is to make descriptive evaluations easier to create bigger and more complex outputs in less time with less code. Introducing format containers with multilabels <https://documentation.sas.com/doc/en/pgmsascdc/v_067/proc/p06ciqes4eaqo6n0zyqtz9p21nfb.htm>, a more powerful summarise which is capable to output every possible combination of the provided grouping variables in one go <https://documentation.sas.com/doc/en/pgmsascdc/v_067/proc/p0jvbbqkt0gs2cn1lo4zndbqs1pe.htm>, tabulation functions which can create any table in different styles <https://documentation.sas.com/doc/en/pgmsascdc/v_067/proc/n1ql5xnu0k3kdtn11gwa5hc7u435.htm> and other more readable functions. The code is optimized to work fast even with datasets of over a million observations.
Author: Tim Siebenmorgen [aut, cre, cph]
Maintainer: Tim Siebenmorgen <qol_package@proton.me>
Diff between qol versions 1.2.0 dated 2026-01-13 and 1.2.1 dated 2026-02-11
qol-1.2.0/qol/inst/extdata/qol_example_data.csv |only qol-1.2.0/qol/inst/extdata/qol_example_data.xlsx |only qol-1.2.1/qol/DESCRIPTION | 8 qol-1.2.1/qol/MD5 | 122 ++-- qol-1.2.1/qol/NAMESPACE | 14 qol-1.2.1/qol/NEWS.md | 81 ++- qol-1.2.1/qol/R/any_table.R | 478 ++++++++++++++---- qol-1.2.1/qol/R/apply_format.R | 13 qol-1.2.1/qol/R/build_master.R | 4 qol-1.2.1/qol/R/content_report.R | 2 qol-1.2.1/qol/R/conversion.R | 28 - qol-1.2.1/qol/R/create_format.R | 158 +++++ qol-1.2.1/qol/R/crosstabs.R | 101 ++- qol-1.2.1/qol/R/excel_helpers.R | 232 +++++--- qol-1.2.1/qol/R/export_with_style.R | 8 qol-1.2.1/qol/R/free_memory.R |only qol-1.2.1/qol/R/frequencies.R | 343 ++++++++---- qol-1.2.1/qol/R/globals.R | 7 qol-1.2.1/qol/R/if_else.R | 101 +++ qol-1.2.1/qol/R/import_export.R | 188 ++++++- qol-1.2.1/qol/R/internal.R | 20 qol-1.2.1/qol/R/keep_drop.R | 448 ++++++++-------- qol-1.2.1/qol/R/macro.R |only qol-1.2.1/qol/R/options.R | 112 +++- qol-1.2.1/qol/R/qol.R | 13 qol-1.2.1/qol/R/recode.R | 63 +- qol-1.2.1/qol/R/renaming.R | 26 qol-1.2.1/qol/R/retain.R | 185 +++--- qol-1.2.1/qol/R/small_helpers.R | 57 ++ qol-1.2.1/qol/R/sort_plus.R | 21 qol-1.2.1/qol/R/strings.R |only qol-1.2.1/qol/R/summarise_plus.R | 194 ++++++- qol-1.2.1/qol/R/transpose_plus.R | 5 qol-1.2.1/qol/README.md | 6 qol-1.2.1/qol/inst/extdata/qol_example_data_csv.csv |only qol-1.2.1/qol/inst/extdata/qol_example_data_xlsx.xlsx |only qol-1.2.1/qol/man/any_table.Rd | 35 - qol-1.2.1/qol/man/combine_into_workbook.Rd | 53 - qol-1.2.1/qol/man/concat.Rd |only qol-1.2.1/qol/man/crosstabs.Rd | 7 qol-1.2.1/qol/man/duplicates.Rd |only qol-1.2.1/qol/man/excel_output_style.Rd | 34 + qol-1.2.1/qol/man/expand_formats.Rd |only qol-1.2.1/qol/man/free_memory.Rd |only qol-1.2.1/qol/man/frequencies.Rd | 9 qol-1.2.1/qol/man/import_export.Rd | 63 ++ qol-1.2.1/qol/man/keep_dropp.Rd | 2 qol-1.2.1/qol/man/macro.Rd |only qol-1.2.1/qol/man/qol-package.Rd | 13 qol-1.2.1/qol/man/qol_options.Rd | 22 qol-1.2.1/qol/man/recode.Rd | 18 qol-1.2.1/qol/man/remove_blanks.Rd |only qol-1.2.1/qol/man/retain.Rd | 68 +- qol-1.2.1/qol/man/style_options.Rd | 5 qol-1.2.1/qol/man/sub_string.Rd |only qol-1.2.1/qol/man/summarise_plus.Rd | 5 qol-1.2.1/qol/man/where..Rd |only qol-1.2.1/qol/tests/testthat/test-any_table.R | 133 +++-- qol-1.2.1/qol/tests/testthat/test-create_format.R | 99 +++ qol-1.2.1/qol/tests/testthat/test-free_memory.R |only qol-1.2.1/qol/tests/testthat/test-frequencies.R | 57 +- qol-1.2.1/qol/tests/testthat/test-if_else.R | 12 qol-1.2.1/qol/tests/testthat/test-import_export.R | 94 ++- qol-1.2.1/qol/tests/testthat/test-loading.R | 2 qol-1.2.1/qol/tests/testthat/test-macro.R |only qol-1.2.1/qol/tests/testthat/test-options.R | 51 + qol-1.2.1/qol/tests/testthat/test-recode.R | 421 +++++++-------- qol-1.2.1/qol/tests/testthat/test-retain.R | 164 +++--- qol-1.2.1/qol/tests/testthat/test-small_helpers.R | 15 qol-1.2.1/qol/tests/testthat/test-strings.R |only qol-1.2.1/qol/tests/testthat/test-summarise_plus.R | 155 ++++- 71 files changed, 3257 insertions(+), 1318 deletions(-)
Title: Evolutionary Diversity Metrics for Raster Data
Description: Phylogenetic Diversity (PD, Faith 1992), Evolutionary
Distinctiveness (ED, Isaac et al. 2007), Phylogenetic Endemism (PE,
Rosauer et al. 2009; Laffan et al. 2016), and Weighted Endemism (WE,
Laffan et al. 2016) for presence-absence raster. Faith, D. P. (1992)
<doi:10.1016/0006-3207(92)91201-3> Isaac, N. J. et al. (2007)
<doi:10.1371/journal.pone.0000296> Laffan, S. W. et al. (2016)
<doi:10.1111/2041-210X.12513> Rosauer, D. et al. (2009)
<doi:10.1111/j.1365-294X.2009.04311.x>.
Author: Gabriela Alves-Ferreira [aut, cre, cph] ,
Flavio M. M. Mota [aut] ,
Neander Marcel Heming [aut]
Maintainer: Gabriela Alves-Ferreira <gabriela-alves77@hotmail.com>
This is a re-admission after prior archival of version 2.2.0 dated 2025-02-28
Diff between phyloraster versions 2.2.0 dated 2025-02-28 and 2.3.0 dated 2026-02-11
DESCRIPTION | 18 - MD5 | 32 +-- NEWS.md | 12 - R/arg.check.R | 89 ++++---- R/geo.phylo.R | 2 R/rast.ed.ses.R | 2 README.md | 2 build/vignette.rds |binary inst/doc/phyloraster-vignette.R | 4 inst/doc/phyloraster-vignette.html | 54 ++--- man/shp2rast.Rd | 4 tests/testthat/test-delta-grid.R | 168 +++++++--------- tests/testthat/test-geo.phylo.R | 388 ++++++++++++++++++------------------- tests/testthat/test-rast-ed-ses.R | 244 +++++++++++------------ tests/testthat/test-rast.pd.ses.R | 242 +++++++++++------------ tests/testthat/test-rast.pe.ses.R | 206 +++++++++---------- tests/testthat/test-shp2rast.R | 208 +++++++++---------- 17 files changed, 834 insertions(+), 841 deletions(-)
Title: Biodiversity Data from the GBIF Node Network
Description: The Global Biodiversity Information Facility
('GBIF', <https://www.gbif.org>) sources data from an international network
of data providers, known as 'nodes'. Several of these nodes - the "living
atlases" (<https://living-atlases.gbif.org>) - maintain their own web
services using software originally developed by the Atlas of Living
Australia ('ALA', <https://www.ala.org.au>). 'galah' enables the R community
to directly access data and resources hosted by 'GBIF' and its partner nodes.
Author: Martin Westgate [aut, cre],
Dax Kellie [aut],
Shandiya Balasubramaniam [ctb],
Matilda Stevenson [ctb]
Maintainer: Martin Westgate <martin.westgate@csiro.au>
Diff between galah versions 2.1.2 dated 2025-06-12 and 2.2.0 dated 2026-02-11
galah-2.1.2/galah/R/arrange.R |only galah-2.1.2/galah/R/build.R |only galah-2.1.2/galah/R/build_checks.R |only galah-2.1.2/galah/R/build_query_set.R |only galah-2.1.2/galah/R/check_internal_cache.R |only galah-2.1.2/galah/R/collapse.R |only galah-2.1.2/galah/R/collapse_distributions.R |only galah-2.1.2/galah/R/collapse_media.R |only galah-2.1.2/galah/R/collapse_occurrences_count.R |only galah-2.1.2/galah/R/collapse_occurrences_doi.R |only galah-2.1.2/galah/R/collapse_species.R |only galah-2.1.2/galah/R/collapse_taxa.R |only galah-2.1.2/galah/R/collapse_unnest.R |only galah-2.1.2/galah/R/collect.R |only galah-2.1.2/galah/R/collect_unnest.R |only galah-2.1.2/galah/R/compute.R |only galah-2.1.2/galah/R/count-data_request.R |only galah-2.1.2/galah/R/parse_checks.R |only galah-2.1.2/galah/R/parse_metadata.R |only galah-2.1.2/galah/R/parse_metadata_unnest.R |only galah-2.1.2/galah/R/parse_occurrences_count.R |only galah-2.1.2/galah/R/parse_query.R |only galah-2.1.2/galah/R/parse_species_count.R |only galah-2.1.2/galah/R/quosure_handling.R |only galah-2.1.2/galah/R/slice_head.R |only galah-2.1.2/galah/R/tidyverse.R |only galah-2.1.2/galah/R/update_data_request.R |only galah-2.1.2/galah/R/utilities_occurrences.R |only galah-2.1.2/galah/inst/doc/choosing_an_atlas.R |only galah-2.1.2/galah/inst/doc/choosing_an_atlas.Rmd |only galah-2.1.2/galah/inst/doc/choosing_an_atlas.html |only galah-2.1.2/galah/inst/doc/download_data.Rmd |only galah-2.1.2/galah/inst/doc/download_data.html |only galah-2.1.2/galah/inst/doc/narrow_your_results.Rmd |only galah-2.1.2/galah/inst/doc/narrow_your_results.html |only galah-2.1.2/galah/inst/doc/object_oriented_programming.Rmd |only galah-2.1.2/galah/inst/doc/object_oriented_programming.html |only galah-2.1.2/galah/man/tidyverse_functions.Rd |only galah-2.1.2/galah/tests/testthat/test-count_arrange_slice.R |only galah-2.1.2/galah/tests/testthat/test-galah_filter.R |only galah-2.1.2/galah/tests/testthat/test-galah_select.R |only galah-2.1.2/galah/vignettes/atlas_stats.csv |only galah-2.1.2/galah/vignettes/choosing_an_atlas.Rmd |only galah-2.1.2/galah/vignettes/download_data.Rmd |only galah-2.1.2/galah/vignettes/narrow_your_results.Rmd |only galah-2.1.2/galah/vignettes/object_oriented_programming.Rmd |only galah-2.2.0/galah/DESCRIPTION | 23 galah-2.2.0/galah/MD5 | 347 ++--- galah-2.2.0/galah/NAMESPACE | 149 -- galah-2.2.0/galah/NEWS.md | 32 galah-2.2.0/galah/R/atlas_citation.R | 19 galah-2.2.0/galah/R/atlas_counts.R | 12 galah-2.2.0/galah/R/atlas_media.R | 134 -- galah-2.2.0/galah/R/atlas_occurrences.R | 7 galah-2.2.0/galah/R/atlas_species.R | 20 galah-2.2.0/galah/R/atlas_taxonomy.R | 105 - 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Title: Time Series Prediction with Integrated Tuning
Description: Time series prediction is a critical task in data analysis, requiring not only the selection of appropriate models, but also suitable data preprocessing and tuning strategies.
TSPredIT (Time Series Prediction with Integrated Tuning) is a framework that provides a seamless integration of data preprocessing, decomposition, model training, hyperparameter optimization, and evaluation.
Unlike other frameworks, TSPredIT emphasizes the co-optimization of both preprocessing and modeling steps, improving predictive performance.
It supports a variety of statistical and machine learning models, filtering techniques, outlier detection, data augmentation, and ensemble strategies.
More information is available in Salles et al. <doi:10.1007/978-3-662-68014-8_2>.
Author: Eduardo Ogasawara [aut, ths, cre] ,
Cristiane Gea [aut],
Diego Carvalho [ctb],
Diogo Santos [aut],
Eduardo Bezerra [ctb],
Esther Pacitti [ctb],
Fabio Porto [ctb],
Fernando Alexandrino [aut],
Rebecca Salles [aut],
Vitoria Birindiba [aut],
CEFET/RJ [cp [...truncated...]
Maintainer: Eduardo Ogasawara <eogasawara@ieee.org>
Diff between tspredit versions 1.2.747 dated 2025-10-27 and 1.2.767 dated 2026-02-11
DESCRIPTION | 6 +-- MD5 | 70 ++++++++++++++++++++++++++++++++++--------- NAMESPACE | 2 + R/data.R | 20 ------------ R/ts_arima.R | 2 + R/ts_elm.R | 2 + R/ts_knn.R | 2 + R/ts_mlp.R | 1 R/ts_reg.R | 1 R/ts_regsw.R | 3 + R/ts_rf.R | 2 + R/ts_svm.R | 2 + R/tspredbench.R |only R/tspredbench_loadfulldata.R |only README.md | 14 +++----- build |only data/CATS.RData |only data/EUNITE.Loads.RData |only data/EUNITE.Reg.RData |only data/EUNITE.Temp.RData |only data/NN3.RData |only data/NN5.RData |only data/SantaFe.A.RData |only data/SantaFe.D.RData |only data/bioenergy.RData |only data/climate.RData |only data/emissions.RData |only data/fertilizers.RData |binary data/gdp.RData |only data/ipeadata.d.RData |only data/ipeadata.m.RData |only data/m1.RData |only data/m3.RData |only data/m4.RData |only data/pesticides.RData |only data/stocks.RData |only man/CATS.Rd |only man/EUNITE.Loads.Rd |only man/EUNITE.Reg.Rd |only man/EUNITE.Temp.Rd |only man/NN3.Rd |only man/NN5.Rd |only man/SantaFe.A.Rd |only man/SantaFe.D.Rd |only man/bioenergy.Rd |only man/climate.Rd |only man/emissions.Rd |only man/fertilizers.Rd | 27 +++++++--------- man/gdp.Rd |only man/ipeadata.d.Rd |only man/ipeadata.m.Rd |only man/loadfulldata.Rd |only man/m1.Rd |only man/m3.Rd |only man/m4.Rd |only man/pesticides.Rd |only man/stocks.Rd |only 57 files changed, 94 insertions(+), 60 deletions(-)
Title: Utility Functions for Data Analysis and Visualization
Description: A comprehensive collection of utility functions for data analysis
and visualization in R. The package provides 60+ functions for data
manipulation, file handling, color palette management, bioinformatics
workflows, statistical analysis, plotting, and package management. Features include void value
handling, custom infix operators, flexible file I/O, and publication-ready
visualizations with sensible defaults. Implementation follows tidyverse
principles (Wickham et al. (2019) <doi:10.21105/joss.01686>) and incorporates
best practices from the R community.
Author: Evan Zhou [aut, cre]
Maintainer: Evan Zhou <evanzhou.bio@gmail.com>
Diff between evanverse versions 0.3.7 dated 2025-10-21 and 0.4.0 dated 2026-02-11
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Title: Simple and Configurable Tables in 'HTML', 'LaTeX', 'Markdown',
'Word', 'PNG', 'PDF', and 'Typst' Formats
Description: Create highly customized tables with this simple and dependency-free package. Data frames can be converted to 'HTML', 'LaTeX', 'Markdown', 'Word', 'PNG', 'PDF', or 'Typst' tables. The user interface is minimalist and easy to learn. The syntax is concise. 'HTML' tables can be customized using the flexible 'Bootstrap' framework, and 'LaTeX' code with the 'tabularray' package.
Author: Vincent Arel-Bundock [aut, cre]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between tinytable versions 0.15.2 dated 2025-12-21 and 0.16.0 dated 2026-02-11
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tinytable-0.16.0/tinytable/inst/tinytest/_tinysnapshot/typst-tblr.typ | 4 tinytable-0.16.0/tinytable/inst/tinytest/helpers.R | 3 tinytable-0.16.0/tinytable/inst/tinytest/test-latex.R | 11 tinytable-0.16.0/tinytable/inst/tinytest/test-misc.R | 1 tinytable-0.16.0/tinytable/inst/tinytest/test-theme.R | 13 tinytable-0.16.0/tinytable/man/format_tt.Rd | 3 tinytable-0.16.0/tinytable/man/pkgdown_print.tinytable.Rd |only tinytable-0.16.0/tinytable/man/style_tt.Rd | 2 tinytable-0.16.0/tinytable/man/theme_default.Rd | 5 tinytable-0.16.0/tinytable/man/theme_rotate.Rd | 4 tinytable-0.16.0/tinytable/man/theme_tinytable.Rd |only 175 files changed, 854 insertions(+), 755 deletions(-)
Title: Functions and Datasets Required for ST370 Class
Description: Provides functions and datasets required for the ST 370 course at North Carolina State University.
Author: Dennis D. Boos [aut],
Douglas Nychka [aut],
Dennis Boos [cre]
Maintainer: Dennis Boos <boos@ncsu.edu>
Diff between Rlab versions 4.0 dated 2022-05-04 and 4.5.1 dated 2026-02-11
DESCRIPTION | 22 +++++++++++++++++----- MD5 | 8 ++++---- man/Exponential.Rd | 2 +- man/Gamma.Rd | 2 +- man/college.Rd | 4 ++-- 5 files changed, 25 insertions(+), 13 deletions(-)
Title: Polytomous Variable Latent Class Analysis
Description: Latent class analysis and latent class regression models
for polytomous outcome variables. Also known as latent structure analysis.
Author: Drew Linzer [aut, cre],
Jeffrey Lewis [aut]
Maintainer: Drew Linzer <drew@votamatic.org>
Diff between poLCA versions 1.6.0.1 dated 2022-04-25 and 1.6.0.2 dated 2026-02-11
DESCRIPTION | 24 +++++++++++++++--------- MD5 | 12 ++++++------ README.md | 4 ++-- inst/CITATION | 10 ++++++---- man/carcinoma.Rd | 2 +- man/poLCA.Rd | 4 ++-- src/poLCA.c | 2 +- 7 files changed, 33 insertions(+), 25 deletions(-)
Title: Historical and Ahistorical Population Projection Matrix Analysis
Description: Complete analytical environment for the construction and analysis
of matrix population models and integral projection models.
Includes the ability to construct historical matrices, which are
2d matrices comprising 3 consecutive times of demographic
information. Estimates both raw and function-based forms of
historical and standard ahistorical matrices. It also estimates
function-based age-by-stage matrices and raw and function-based
Leslie matrices.
Author: Richard P. Shefferson [aut, cre] ,
Johan Ehrlen [aut]
Maintainer: Richard P. Shefferson <cdorm@g.ecc.u-tokyo.ac.jp>
Diff between lefko3 versions 6.7.1 dated 2026-01-31 and 6.7.2 dated 2026-02-11
DESCRIPTION | 8 +- MD5 | 28 ++++----- NEWS.md | 14 ++++ R/RcppExports.R | 28 ++++++++- R/matrixcreation.R | 30 +++++++--- man/arlefko2.Rd | 5 + man/bootstrap3.Rd | 8 ++ man/mpm_create.Rd | 6 ++ man/rlefko2.Rd | 5 + man/rlefko3.Rd | 5 + man/rleslie.Rd | 5 + src/DataManagement.cpp | 17 +++++ src/MatsNProj.cpp | 144 ++++++++++++++++++++++++++++++++++++------------- src/PopChar.cpp | 4 - src/RcppExports.cpp | 18 +++--- 15 files changed, 245 insertions(+), 80 deletions(-)
Title: Kaplan-Meier Plot with 'ggplot2'
Description: The function 'jskm()' creates publication quality Kaplan-Meier plot with at risk tables below. 'svyjskm()' provides plot for weighted Kaplan-Meier estimator.
Author: Jinseob Kim [aut, cre] ,
yoonkyoung Chun [aut],
Zarathu [cph, fnd],
sungho Choi [aut],
Mingu Jee [aut],
Wonbin Hahn [aut],
Taehong Kim [aut],
Sangho Oh [aut],
Sewon Lee [aut]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jskm versions 0.6.0 dated 2026-01-27 and 0.6.1 dated 2026-02-11
DESCRIPTION | 18 +++++++++++------- MD5 | 12 ++++++------ NEWS.md | 5 +++++ R/jskm.R | 6 +++--- R/svyjskm.R | 12 ++++++------ README.md | 16 ++++++++-------- inst/doc/jskm.html | 36 ++++++++++++++++++------------------ 7 files changed, 57 insertions(+), 48 deletions(-)
Title: Robust Estimation in the Presence of Cellwise and Casewise
Contamination and Missing Data
Description: Robust Estimation of Multivariate Location and Scatter in the
Presence of Cellwise and Casewise Contamination and Missing Data.
Author: Andy Leung [aut],
Mike Danilov [aut],
Victor Yohai [aut],
Ruben Zamar [aut],
Claudio Agostinelli [cre]
Maintainer: Claudio Agostinelli <claudio.agostinelli@unitn.it>
Diff between GSE versions 4.2-3 dated 2025-10-10 and 4.2-4 dated 2026-02-11
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- src/Makevars | 2 +- src/Makevars.win | 2 +- src/cov-em.cpp | 2 ++ src/cov-em.h | 4 ++-- src/emve.cpp | 11 ++++++----- src/emve.h | 4 ++-- src/gse-rocke.cpp | 22 +++++++++++----------- src/gse.cpp | 16 ++++++++-------- 10 files changed, 46 insertions(+), 43 deletions(-)
Title: Tools for the Analysis of Epidemiological Data
Description: Tools for the analysis of epidemiological and surveillance data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, computation of confidence intervals around incidence risk and incidence rate estimates and sample size calculations for cross-sectional, case-control and cohort studies. Surveillance tools include functions to calculate an appropriate sample size for 1- and 2-stage representative freedom surveys, functions to estimate surveillance system sensitivity and functions to support scenario tree modelling analyses.
Author: Mark Stevenson [aut, cre] ,
Evan Sergeant [aut],
Cord Heuer [ctb],
Telmo Nunes [ctb],
Cord Heuer [ctb],
Jonathon Marshall [ctb],
Javier Sanchez [ctb],
Ron Thornton [ctb],
Jeno Reiczigel [ctb],
Jim Robison-Cox [ctb],
Paola Sebastiani [ctb],
Peter Soly [...truncated...]
Maintainer: Mark Stevenson <mark.stevenson1@unimelb.edu.au>
Diff between epiR versions 2.0.89 dated 2025-12-15 and 2.0.90 dated 2026-02-11
DESCRIPTION | 10 +++++----- MD5 | 20 +++++++++++--------- NAMESPACE | 4 +++- NEWS | 7 +++++++ R/epi.evalue.R |only build/vignette.rds |binary inst/doc/epiR_descriptive_epi.html | 18 +++++++++--------- inst/doc/epiR_diagnostic_tests.html | 20 ++++++++++---------- inst/doc/epiR_measures_of_assoc.html | 12 ++++++------ inst/doc/epiR_sample_size.html | 4 ++-- inst/doc/epiR_surveillance.html | 14 +++++++------- man/epi.evalue.Rd |only 12 files changed, 60 insertions(+), 49 deletions(-)
Title: Data Table Back-End for 'dplyr'
Description: Provides a data.table backend for 'dplyr'. The goal of
'dtplyr' is to allow you to write 'dplyr' code that is automatically
translated to the equivalent, but usually much faster, data.table
code.
Author: Hadley Wickham [cre, aut],
Maximilian Girlich [aut],
Mark Fairbanks [aut],
Ryan Dickerson [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between dtplyr versions 1.3.2 dated 2025-09-10 and 1.3.3 dated 2026-02-11
dtplyr-1.3.2/dtplyr/tests/testthat/_snaps/step-group.md |only dtplyr-1.3.3/dtplyr/DESCRIPTION | 8 +-- dtplyr-1.3.3/dtplyr/MD5 | 33 +++++++------- dtplyr-1.3.3/dtplyr/NEWS.md | 4 + dtplyr-1.3.3/dtplyr/README.md | 4 - dtplyr-1.3.3/dtplyr/build/vignette.rds |binary dtplyr-1.3.3/dtplyr/inst/doc/translation.Rmd | 2 dtplyr-1.3.3/dtplyr/inst/doc/translation.html | 8 +-- dtplyr-1.3.3/dtplyr/man/expand.dtplyr_step.Rd | 18 +------- dtplyr-1.3.3/dtplyr/man/filter.dtplyr_step.Rd | 13 ++--- dtplyr-1.3.3/dtplyr/man/group_by.dtplyr_step.Rd | 8 +-- dtplyr-1.3.3/dtplyr/man/mutate.dtplyr_step.Rd | 4 - dtplyr-1.3.3/dtplyr/man/pivot_longer.dtplyr_step.Rd | 2 dtplyr-1.3.3/dtplyr/man/reframe.dtplyr_step.Rd | 4 - dtplyr-1.3.3/dtplyr/man/slice.dtplyr_step.Rd | 4 - dtplyr-1.3.3/dtplyr/man/summarise.dtplyr_step.Rd | 36 +++++----------- dtplyr-1.3.3/dtplyr/tests/testthat/test-step-group.R | 4 - dtplyr-1.3.3/dtplyr/vignettes/translation.Rmd | 2 18 files changed, 61 insertions(+), 93 deletions(-)
Title: Generate 'CodeMeta' Metadata for R Packages
Description: The 'Codemeta' Project defines a 'JSON-LD' format
for describing software metadata, as detailed at
<https://codemeta.github.io>. This package provides utilities to
generate, parse, and modify 'codemeta.json' files automatically for R
packages, as well as tools and examples for working with
'codemeta.json' 'JSON-LD' more generally.
Author: Carl Boettiger [aut, cre, cph] ,
Anna Krystalli [rev, ctb] ,
Toph Allen [rev] ,
Maelle Salmon [ctb, aut] ,
rOpenSci [fnd] ,
Katrin Leinweber [ctb] ,
Noam Ross [ctb] ,
Arfon Smith [ctb],
Jeroen Ooms [ctb] ,
Sebastian Meyer [ctb] ,
Michael Rustler [ctb [...truncated...]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between codemetar versions 0.3.6 dated 2025-07-28 and 0.3.7 dated 2026-02-11
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 +++- build/vignette.rds |binary inst/doc/codemetar.html | 4 ++-- tests/testthat/test-give_opinions.R | 29 +++++++++++++++++++++-------- 6 files changed, 34 insertions(+), 19 deletions(-)