Title: Some Multivariate Analyses using Structural Equation Modeling
Description: A set of functions for some multivariate analyses utilizing a
structural equation modeling (SEM) approach through the 'OpenMx' package.
These analyses include canonical correlation analysis (CANCORR),
redundancy analysis (RDA), and multivariate principal component regression (MPCR).
It implements procedures discussed in Gu and Cheung (2023) <doi:10.1111/bmsp.12301>,
Gu, Yung, and Cheung (2019) <doi:10.1080/00273171.2018.1512847>, and
Gu et al. (2023) <doi:10.1080/00273171.2022.2141675>.
Author: Mike Cheung [aut, cre] ,
Fei Gu [ctb] ,
Yiu-Fai Yung [ctb]
Maintainer: Mike Cheung <mikewlcheung@nus.edu.sg>
Diff between mulSEM versions 1.0 dated 2024-02-04 and 1.2 dated 2026-02-16
mulSEM-1.0/mulSEM/man/print.Rd |only mulSEM-1.2/mulSEM/DESCRIPTION | 19 ++- mulSEM-1.2/mulSEM/MD5 | 55 +++++----- mulSEM-1.2/mulSEM/NAMESPACE | 21 ++- mulSEM-1.2/mulSEM/NEWS | 8 + mulSEM-1.2/mulSEM/R/cancorr.R | 117 ++++++++++++++++++--- mulSEM-1.2/mulSEM/R/data.R |only mulSEM-1.2/mulSEM/R/helper.R | 11 ++ mulSEM-1.2/mulSEM/R/mpcr.R | 173 ++++++++++++++++++++++++-------- mulSEM-1.2/mulSEM/R/mulSEM-package.R |only mulSEM-1.2/mulSEM/R/rda.R | 85 +++++++++++++-- mulSEM-1.2/mulSEM/README.md | 14 +- mulSEM-1.2/mulSEM/build |only mulSEM-1.2/mulSEM/data/Chittum19.rda |binary mulSEM-1.2/mulSEM/data/Lambert88.rda |binary mulSEM-1.2/mulSEM/data/Nimon21.rda |binary mulSEM-1.2/mulSEM/data/Thorndike00.rda |binary mulSEM-1.2/mulSEM/data/sas_ex1.rda |binary mulSEM-1.2/mulSEM/data/sas_ex2.rda |binary mulSEM-1.2/mulSEM/man/Chittum19.Rd | 47 ++++---- mulSEM-1.2/mulSEM/man/Lambert88.Rd | 47 ++++---- mulSEM-1.2/mulSEM/man/Nimon21.Rd | 40 ++++--- mulSEM-1.2/mulSEM/man/Thorndike00.Rd | 39 +++---- mulSEM-1.2/mulSEM/man/cancorr.Rd | 107 ++++++++++++------- mulSEM-1.2/mulSEM/man/mpcr.Rd | 116 +++++++++++++-------- mulSEM-1.2/mulSEM/man/mulSEM-package.Rd | 84 +++++++++------ mulSEM-1.2/mulSEM/man/print.CanCorr.Rd |only mulSEM-1.2/mulSEM/man/print.MPCR.Rd |only mulSEM-1.2/mulSEM/man/print.RDA.Rd |only mulSEM-1.2/mulSEM/man/rda.Rd | 87 ++++++++++------ mulSEM-1.2/mulSEM/man/sas_ex1.Rd | 33 ++++-- mulSEM-1.2/mulSEM/man/sas_ex2.Rd | 29 +++-- 32 files changed, 779 insertions(+), 353 deletions(-)
Title: Interim Analysis of Operational Futility in Randomized Trials
with Time-to-Event Endpoints and Fixed Follow-Up
Description: Randomized clinical trials commonly follow participants for a time-to-event efficacy endpoint for a fixed period of time. Consequently, at the time when the last enrolled participant completes their follow-up, the number of observed endpoints is a random variable. Assuming data collected through an interim timepoint, simulation-based estimation and inferential procedures in the standard right-censored failure time analysis framework are conducted for the distribution of the number of endpoints--in total as well as by treatment arm--at the end of the follow-up period. The future (i.e., yet unobserved) enrollment, endpoint, and dropout times are generated according to mechanisms specified in the simTrial() function in the 'seqDesign' package. A Bayesian model for the endpoint rate, offering the option to specify a robust mixture prior distribution, is used for generating future data (see the vignette for details). Inference can be restricted to participants who received treatment accordi [...truncated...]
Author: Yingying Zhuang [aut],
Michal Juraska [aut, cre],
Doug Grove [ctb],
Peter Gilbert [ctb],
Alexander Luedtke [ctb],
Sanne Roels [ctb],
An Vandebosch [ctb]
Maintainer: Michal Juraska <mjuraska@fredhutch.org>
Diff between futility versions 0.4 dated 2019-04-11 and 0.5 dated 2026-02-16
DESCRIPTION | 11 MD5 | 16 R/futility.R | 3531 ++++++++++++++++---------------- build/vignette.rds |binary inst/doc/bayesianIncidenceRateModel.pdf |binary man/completeTrial.byArm.Rd | 29 man/completeTrial.pooledArms.Rd | 43 man/plotRCDF.byArm.Rd | 29 man/plotRCDF.pooledArms.Rd | 43 9 files changed, 1972 insertions(+), 1730 deletions(-)
Title: Utility Functions to Support and Extend the 'rbmi' Package
Description: Provides utility functions that extend the capabilities of the
reference-based multiple imputation package 'rbmi'. It supports clinical
trial analysis workflows with functions for managing imputed datasets,
applying analysis methods across imputations, and tidying results for
reporting.
Author: Mark Baillie [aut, cre, cph] ,
Tobias Muetze [aut] ,
Jack Talboys [aut],
Lukas A. Widmer [ctb]
Maintainer: Mark Baillie <bailliem@gmail.com>
Diff between rbmiUtils versions 0.1.8 dated 2026-01-24 and 0.3.0 dated 2026-02-16
DESCRIPTION | 24 - MD5 | 117 +++++- NAMESPACE | 24 + NEWS.md | 137 +++++++ R/analyse_mi_data.R | 440 +++++++++++++++++++++-- R/analysis_utils.R | 109 +++++ R/ard_conversion.R |only R/data_helpers.R |only R/describe.R |only R/efficacy_table.R |only R/formatting.R |only R/imputation_storage.R |only R/plot_forest.R |only R/pool_methods.R |only R/rbmiUtils-package.R | 3 R/result_helpers.R |only R/tidiers.R | 123 ++++-- R/utils.R | 56 +++ README.md | 165 ++++---- build/vignette.rds |binary inst/WORDLIST | 74 +++ inst/doc/analyse2.R | 11 inst/doc/analyse2.Rmd | 47 +- inst/doc/analyse2.html | 133 +++---- inst/doc/data-preparation.R |only inst/doc/data-preparation.Rmd |only inst/doc/data-preparation.html |only inst/doc/deriving-endpoints.R |only inst/doc/deriving-endpoints.Rmd |only inst/doc/deriving-endpoints.html |only inst/doc/diagnostics.R |only inst/doc/diagnostics.Rmd |only inst/doc/diagnostics.html |only inst/doc/efficient-storage.R |only inst/doc/efficient-storage.Rmd |only inst/doc/efficient-storage.html |only inst/doc/pipeline.R |only inst/doc/pipeline.Rmd |only inst/doc/pipeline.html |only man/analyse_mi_data.Rd | 37 + man/as_analysis2.Rd | 4 man/as_simple_formula2.Rd | 4 man/combine_results.Rd |only man/create_impid.Rd |only man/describe_draws.Rd |only man/describe_imputation.Rd |only man/efficacy_table.Rd |only man/expand_imputed_data.Rd |only man/extract_covariates2.Rd | 3 man/extract_lsm.Rd |only man/extract_trt_effects.Rd |only man/figures/README-efficacy-table-1.png |only man/figures/README-forest-plot-1.png |only man/figures/efficacy_table-example.png |only man/figures/logo.png |only man/figures/plot_forest-trt.png |only man/format_estimate.Rd |only man/format_pvalue.Rd |only man/format_results.Rd |only man/format_results_table.Rd |only man/plot_forest.Rd |only man/pool_to_ard.Rd |only man/prepare_data_ice.Rd |only man/print.analysis.Rd |only man/print.describe_draws.Rd |only man/print.describe_imputation.Rd |only man/print.pool.Rd |only man/rbmiUtils-package.Rd | 4 man/reduce_imputed_data.Rd |only man/summarise_missingness.Rd |only man/summary.analysis.Rd |only man/summary.pool.Rd |only man/tidy_pool_obj.Rd | 39 +- man/validate_data.Rd |only tests/testthat/Rplots.pdf |only tests/testthat/test-analyse_mi_data.R | 574 ++++++++++++++++++++++++++++++- tests/testthat/test-analysis_utils.R | 349 ++++++++++++++++++ tests/testthat/test-ard_conversion.R |only tests/testthat/test-data_helpers.R |only tests/testthat/test-describe.R |only tests/testthat/test-efficacy_table.R |only tests/testthat/test-formatting.R |only tests/testthat/test-imputation_storage.R |only tests/testthat/test-integration.R |only tests/testthat/test-plot_forest.R |only tests/testthat/test-pool_methods.R |only tests/testthat/test-result_helpers.R |only tests/testthat/test-tidiers.R | 336 ++++++++++++++++++ vignettes/analyse2.Rmd | 47 +- vignettes/data-preparation.Rmd |only vignettes/deriving-endpoints.Rmd |only vignettes/diagnostics.Rmd |only vignettes/efficient-storage.Rmd |only vignettes/pipeline.Rmd |only 94 files changed, 2537 insertions(+), 323 deletions(-)
Title: Analysis of Competing Risks Using Quantile Regressions
Description: Estimation, testing and regression modeling of
subdistribution functions in competing risks using quantile regressions,
as described in Peng and Fine (2009) <DOI:10.1198/jasa.2009.tm08228>.
Author: Stephan Dlugosz [aut, cre],
Limin Peng [aut],
Ruosha Li [aut],
Shuolin Shi [ctb]
Maintainer: Stephan Dlugosz <stephan.dlugosz@googlemail.com>
Diff between cmprskQR versions 0.9.2 dated 2019-09-15 and 0.9.3 dated 2026-02-16
DESCRIPTION | 29 +++++++++++++++++++++-------- MD5 | 4 ++-- man/plot.predict.crrQR.Rd | 4 ++-- 3 files changed, 25 insertions(+), 12 deletions(-)
Title: A Point Pattern Simulator for Spatial Cellular Data
Description: Single cell resolution data has been valuable in learning about tissue microenvironments and interactions between cells or spots. This package allows for the simulation of this level of data, be it single cell or ‘spots’, in both a univariate (single metric or cell type) and bivariate (2 or more metrics or cell types) ways. As more technologies come to marker, more methods will be developed to derive spatial metrics from the data which will require a way to benchmark methods against each other. Additionally, as the field currently stands, there is not a gold standard method to be compared against. We set out to develop an R package that will allow users to simulate point patterns that can be biologically informed from different tissue domains, holes, and varying degrees of clustering/colocalization. The data can be exported as spatial files and a summary file (like 'HALO'). <https://github.com/FridleyLab/scSpatialSIM/>.
Author: Alex Soupir [aut],
Christopher Wilson [aut],
Jordan Creed [aut],
Julia Wrobel [aut],
Oscar Ospina [aut],
Brooke Fridley [aut, cph],
Fridley Lab [cre]
Maintainer: Fridley Lab <fridley.lab@moffitt.org>
Diff between scSpatialSIM versions 0.1.3.4 dated 2024-10-01 and 0.1.4 dated 2026-02-16
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++++-------- R/plotting.R | 6 ++++-- README.md | 6 +++++- build/vignette.rds |binary inst/doc/a01_Introduction.html | 30 +++++++++++++++--------------- inst/doc/a02_Using_with_spatialTIME.Rmd | 2 +- inst/doc/a02_Using_with_spatialTIME.html | 9 +++++---- inst/doc/a03_CellAttributes.R |only inst/doc/a03_CellAttributes.Rmd |only inst/doc/a03_CellAttributes.html |only vignettes/a02_Using_with_spatialTIME.Rmd | 2 +- vignettes/a03_CellAttributes.Rmd |only 13 files changed, 47 insertions(+), 36 deletions(-)
Title: Datasets from the Book "Methods of Multivariate Analysis (3rd)"
Description: Provides the datasets in the book "Methods of Multivariate Analysis (3rd)", such as Table 6.27 Blood Pressure Data, for statistical analysis,especially MANOVA. The dataset names correspond to their numbering in the third edition of the book, such as table6.27. Based on the book by Rencher and Christensen (2012, ISBN:9780470178966).
Author: Atefeh Rashidi Pour [aut, cre],
Fatemeh Naderi [aut]
Maintainer: Atefeh Rashidi Pour <rashidiatefeh98@gmail.com>
Diff between rencher versions 0.1.4 dated 2025-07-02 and 0.1.6 dated 2026-02-16
rencher-0.1.4/rencher/R/table3.3.R |only rencher-0.1.4/rencher/data/table3.3.rda |only rencher-0.1.4/rencher/man/table3.3.Rd |only rencher-0.1.6/rencher/DESCRIPTION | 8 ++++---- rencher-0.1.6/rencher/MD5 | 32 ++++++++++++++++---------------- rencher-0.1.6/rencher/R/table3.4.R | 12 ++++++------ rencher-0.1.6/rencher/R/table3.5.R | 16 ++++++++-------- rencher-0.1.6/rencher/R/table3.7.R | 28 ++++++++++++++-------------- rencher-0.1.6/rencher/R/table3.8.R | 4 ++-- rencher-0.1.6/rencher/R/table3.9.R |only rencher-0.1.6/rencher/data/table3.4.rda |binary rencher-0.1.6/rencher/data/table3.5.rda |binary rencher-0.1.6/rencher/data/table3.6.rda |binary rencher-0.1.6/rencher/data/table3.7.rda |binary rencher-0.1.6/rencher/data/table3.8.rda |binary rencher-0.1.6/rencher/data/table3.9.rda |only rencher-0.1.6/rencher/man/table3.4.Rd | 12 ++++++------ rencher-0.1.6/rencher/man/table3.5.Rd | 14 +++++++------- rencher-0.1.6/rencher/man/table3.8.Rd | 4 ++-- rencher-0.1.6/rencher/man/table3.9.Rd |only 20 files changed, 65 insertions(+), 65 deletions(-)
Title: 'LuaJIT' Scripting
Description: An interface to 'LuaJIT' <https://luajit.org>, a just-in-time
compiler for the 'Lua' scripting language <https://www.lua.org>. Allows
users to run 'Lua' code from 'R'.
Author: Mike Pall [aut, cph] ,
Lua.org, PUC-Rio [cph] ,
Nicholas Davies [cre, ctb, cph] ,
Scott Lembcke, Howling Moon Software [ctb, cph]
Maintainer: Nicholas Davies <nicholas.davies@lshtm.ac.uk>
Diff between luajr versions 0.2.1 dated 2026-02-15 and 0.2.2 dated 2026-02-16
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 5 +++++ inst/doc/luajr.html | 8 ++++---- inst/include/luajr_luajit.h | 4 ++-- src/luajit/src/lj_record.c | 6 +++--- tools/luajit_relver.txt | 2 +- 7 files changed, 24 insertions(+), 19 deletions(-)
Title: Robust Bayesian Longitudinal Regularized Semiparametric Mixed
Models
Description: Our recently developed fully robust Bayesian semiparametric mixed-effect model for high-dimensional longitudinal studies with heterogeneous observations can be implemented through this package. This model can distinguish between time-varying interactions and constant-effect-only cases to avoid model misspecifications. Facilitated by spike-and-slab priors, this model leads to superior performance in estimation, identification and statistical inference. In particular, robust Bayesian inferences in terms of valid Bayesian credible intervals on both parametric and nonparametric effects can be validated on finite samples. The Markov chain Monte Carlo algorithms of the proposed and alternative models are efficiently implemented in 'C++'.
Author: Kun Fan [aut, cre],
Cen Wu [aut]
Maintainer: Kun Fan <kfan@ksu.edu>
Diff between Blend versions 0.1.1.1 dated 2025-01-29 and 0.1.2 dated 2026-02-16
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/Blend-package.R | 5 +++-- README.md | 13 ++++++++----- build/partial.rdb |binary 5 files changed, 20 insertions(+), 16 deletions(-)
Title: Handle Bitfields to Record Meta Data
Description: Record algorithmic and analytic meta data along a workflow to store
that in a bitfield, which can be published alongside any (modelled) data
products.
Author: Steffen Ehrmann [aut, cre]
Maintainer: Steffen Ehrmann <steffen.ehrmann@posteo.de>
Diff between bitfield versions 0.6.1 dated 2025-05-01 and 1.0.0 dated 2026-02-16
bitfield-0.6.1/bitfield/man/dot-rast.Rd |only bitfield-1.0.0/bitfield/DESCRIPTION | 19 bitfield-1.0.0/bitfield/MD5 | 82 bitfield-1.0.0/bitfield/NAMESPACE | 36 bitfield-1.0.0/bitfield/NEWS.md | 33 bitfield-1.0.0/bitfield/R/1registry.R | 74 bitfield-1.0.0/bitfield/R/bf_analyze.R |only bitfield-1.0.0/bitfield/R/bf_decode.R | 247 + bitfield-1.0.0/bitfield/R/bf_encode.R | 157 - bitfield-1.0.0/bitfield/R/bf_export.R |only bitfield-1.0.0/bitfield/R/bf_flag.R |only bitfield-1.0.0/bitfield/R/bf_map.R | 508 ++- bitfield-1.0.0/bitfield/R/bf_protocol.R | 14 bitfield-1.0.0/bitfield/R/bf_registry.R | 75 bitfield-1.0.0/bitfield/R/bf_standards.R | 159 - bitfield-1.0.0/bitfield/R/data.R | 2 bitfield-1.0.0/bitfield/R/helpers.R | 1278 ++++++++-- bitfield-1.0.0/bitfield/README.md | 430 +-- bitfield-1.0.0/bitfield/build |only bitfield-1.0.0/bitfield/data/bf_pcl.rda |binary bitfield-1.0.0/bitfield/data/bf_tbl.rda |binary bitfield-1.0.0/bitfield/inst |only bitfield-1.0.0/bitfield/man/bf_analyze.Rd |only bitfield-1.0.0/bitfield/man/bf_decode.Rd | 57 bitfield-1.0.0/bitfield/man/bf_encode.Rd | 21 bitfield-1.0.0/bitfield/man/bf_export.Rd |only bitfield-1.0.0/bitfield/man/bf_flag.Rd |only bitfield-1.0.0/bitfield/man/bf_map.Rd | 165 - bitfield-1.0.0/bitfield/man/bf_protocol.Rd | 6 bitfield-1.0.0/bitfield/man/bf_registry.Rd | 51 bitfield-1.0.0/bitfield/man/bf_tbl.Rd | 2 bitfield-1.0.0/bitfield/man/dot-assessEncodingQuality.Rd |only bitfield-1.0.0/bitfield/man/dot-makeDatacite.Rd |only bitfield-1.0.0/bitfield/man/dot-makeEncoding.Rd | 61 bitfield-1.0.0/bitfield/man/dot-toBin.Rd | 15 bitfield-1.0.0/bitfield/man/dot-toDec.Rd | 30 bitfield-1.0.0/bitfield/man/figures/README-unnamed-chunk-12-1.png |binary bitfield-1.0.0/bitfield/man/print.bf_analysis.Rd |only bitfield-1.0.0/bitfield/man/project.Rd |only bitfield-1.0.0/bitfield/man/registry-class.Rd | 10 bitfield-1.0.0/bitfield/tests/testthat/test-1registry.R |only bitfield-1.0.0/bitfield/tests/testthat/test-bf_analyze.R |only bitfield-1.0.0/bitfield/tests/testthat/test-bf_decode.R | 208 + bitfield-1.0.0/bitfield/tests/testthat/test-bf_encode.R | 128 - bitfield-1.0.0/bitfield/tests/testthat/test-bf_export.R |only bitfield-1.0.0/bitfield/tests/testthat/test-bf_map.R | 509 +++ bitfield-1.0.0/bitfield/tests/testthat/test-bf_pcl.R |only bitfield-1.0.0/bitfield/tests/testthat/test-bf_protocol.R |only bitfield-1.0.0/bitfield/tests/testthat/test-bf_registry.R | 42 bitfield-1.0.0/bitfield/tests/testthat/test-helpers.R |only bitfield-1.0.0/bitfield/vignettes |only 51 files changed, 3354 insertions(+), 1065 deletions(-)
Title: Difference-in-Differences with Unpoolable Data
Description: A framework for estimating difference-in-differences with
unpoolable data, based on Karim, Webb, Austin, and Strumpf (2025)
<doi:10.48550/arXiv.2403.15910>. Supports common or staggered adoption, multiple
groups, and the inclusion of covariates. Also computes p-values for the
aggregate average treatment effect on the treated via the
randomization inference procedure described in MacKinnon and Webb (2020)
<doi:10.1016/j.jeconom.2020.04.024>.
Author: Eric Jamieson [aut, cre, cph]
Maintainer: Eric Jamieson <ericbrucejamieson@gmail.com>
Diff between undidR versions 3.0.0 dated 2026-01-25 and 3.0.1 dated 2026-02-16
DESCRIPTION | 6 +- MD5 | 26 +++++---- NAMESPACE | 1 NEWS.md | 6 ++ R/undid_stage_three.r | 82 ++++++++++++++++++++++--------- README.md | 42 +++++++++++----- inst/doc/undidR.R | 5 + inst/doc/undidR.Rmd | 5 + inst/doc/undidR.html | 47 +++++++++-------- man/figures |only man/plot.UnDiDObj.Rd | 17 ++++++ man/undid_stage_three.Rd | 16 ++++-- tests/testthat/test-undid_stage_three.r | 84 +++++++++----------------------- vignettes/undidR.Rmd | 5 + 14 files changed, 199 insertions(+), 143 deletions(-)
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Title: Unified Principal Sufficient Dimension Reduction Package
Description: A unified and user-friendly framework for applying the principal sufficient dimension reduction methods for both linear and nonlinear cases. The package has an extendable power by varying loss functions for the support vector machine, even for an user-defined arbitrary function, unless those are convex and differentiable everywhere over the support (Li et al. (2011) <doi:10.1214/11-AOS932>). Also, it provides a real-time sufficient dimension reduction update procedure using the principal least squares support vector machine (Artemiou et al. (2021) <doi:10.1016/j.patcog.2020.107768>).
Author: Jungmin Shin [aut, cre],
Seung Jun Shin [aut],
Andreas Artemiou [aut]
Maintainer: Jungmin Shin <c16267@gmail.com>
Diff between psvmSDR versions 2.0.1 dated 2025-10-27 and 3.0.1 dated 2026-02-16
DESCRIPTION | 6 MD5 | 44 - NAMESPACE | 12 R/fn_minor.R | 77 +++ R/fn_npsdr.R | 729 +++++++++++++------------------- R/fn_npsdr_x.R | 107 +++- R/fn_plot_npsdr.R | 159 +++++-- R/fn_plot_psdr.R | 152 +++++- R/fn_psdr.R | 955 ++++++++++++++++++++++++------------------- R/fn_psdr_bic.R | 185 ++++++-- R/fn_rtpsdr.R | 368 +++++++++++----- R/psvmSDR-package.R | 2 README.md | 2 man/npsdr.Rd | 55 +- man/npsdr_x.Rd | 28 + man/plot.npsdr.Rd | 47 +- man/plot.psdr.Rd | 46 +- man/psdr.Rd | 83 ++- man/psdr_bic.Rd | 95 +++- man/rtpsdr.Rd | 85 ++- tests/testthat/Rplots.pdf |binary tests/testthat/test-psdr.R | 17 tests/testthat/test-rtpsdr.R | 13 23 files changed, 1987 insertions(+), 1280 deletions(-)
Title: Parallel Nonparametric Kernel Smoothing Methods for Mixed Data
Types Using 'MPI'
Description: Nonparametric (and semiparametric) kernel methods that seamlessly
handle a mix of continuous, unordered, and ordered factor data types. This
package is a parallel implementation of the 'np' package based on the 'MPI'
specification that incorporates the 'Rmpi' package (Hao Yu
<hyu@stats.uwo.ca>) with minor modifications and we are extremely grateful
to Hao Yu for his contributions to the 'R' community. We would like to
gratefully acknowledge support from the Natural Sciences and Engineering
Research Council of Canada (NSERC, <https://www.nserc-crsng.gc.ca/>), the
Social Sciences and Humanities Research Council of Canada (SSHRC,
<https://www.sshrc-crsh.gc.ca/>), and the Shared Hierarchical Academic
Research Computing Network (SHARCNET, <https://sharcnet.ca/>). We would
also like to acknowledge the contributions of the 'GNU GSL' authors. In
particular, we adapt the 'GNU GSL' B-spline routine 'gsl_bspline.c' adding
automated support for quantile knots (in addition t [...truncated...]
Author: Jeffrey S. Racine [aut, cre],
Tristen Hayfield [aut],
Hao Yu [ctb, cph],
The GSL Team [cph],
Numerical Recipes Software [cph]
Maintainer: Jeffrey S. Racine <racinej@mcmaster.ca>
This is a re-admission after prior archival of version 0.60-2 dated 2014-06-27
Diff between npRmpi versions 0.60-2 dated 2014-06-27 and 0.60-20 dated 2026-02-16
npRmpi-0.60-2/npRmpi/demo/serial |only npRmpi-0.60-2/npRmpi/inst/doc/npRmpi.bib |only npRmpi-0.60-20/npRmpi/CHANGELOG | 328 + npRmpi-0.60-20/npRmpi/DESCRIPTION | 57 npRmpi-0.60-20/npRmpi/MD5 | 397 - npRmpi-0.60-20/npRmpi/NAMESPACE | 17 npRmpi-0.60-20/npRmpi/R/Rcoll.R | 2 npRmpi-0.60-20/npRmpi/R/Rmpi.R | 6 npRmpi-0.60-20/npRmpi/R/Rng.R | 6 npRmpi-0.60-20/npRmpi/R/Rparutilities.R | 131 npRmpi-0.60-20/npRmpi/R/bandwidth.R | 4 npRmpi-0.60-20/npRmpi/R/cmstest.R | 11 npRmpi-0.60-20/npRmpi/R/conbandwidth.R | 4 npRmpi-0.60-20/npRmpi/R/condbandwidth.R | 4 npRmpi-0.60-20/npRmpi/R/dbandwidth.R | 4 npRmpi-0.60-20/npRmpi/R/deneqtest.R | 13 npRmpi-0.60-20/npRmpi/R/deptest.R | 5 npRmpi-0.60-20/npRmpi/R/gsl_bspline.R |only npRmpi-0.60-20/npRmpi/R/np.condensity.bw.R | 39 npRmpi-0.60-20/npRmpi/R/np.condistribution.bw.R | 47 npRmpi-0.60-20/npRmpi/R/np.conmode.R | 14 npRmpi-0.60-20/npRmpi/R/np.copula.R | 9 npRmpi-0.60-20/npRmpi/R/np.deneqtest.R | 4 npRmpi-0.60-20/npRmpi/R/np.density.R | 8 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Title: Power Analysis and Data Simulation for Multilevel Models
Description: A declarative language for specifying multilevel models,
solving for population parameters based on specified variance-explained effect
size measures, generating data, and conducting power analyses to determine
sample size recommendations. The specification allows for any number of
within-cluster effects, between-cluster effects, covariate effects
at either level, and random coefficients. Moreover, the models do not
assume orthogonal effects, and predictors can correlate at either level
and accommodate models with multiple interaction effects.
Author: Brian T. Keller [aut, cre, cph]
Maintainer: Brian T. Keller <btkeller@missouri.edu>
Diff between mlmpower versions 1.0.10 dated 2025-05-07 and 1.0.11 dated 2026-02-16
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/model.R | 2 +- build/vignette.rds |binary 5 files changed, 12 insertions(+), 8 deletions(-)
Title: Access Data from the 'Impect' API
Description: Pull data from the 'Impect' Customer API <https://glossary.impect.com/api-design>. The package can retrieve data such as events or match sums.
Author: Impect GmbH [cph],
Florian Schmitt [aut, cre],
Thomas Walentin [ctb]
Maintainer: Florian Schmitt <florian.schmitt@impect.com>
Diff between impectR versions 2.5.3 dated 2025-12-17 and 2.5.4 dated 2026-02-16
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 13 +++++++++++++ README.md | 4 ++-- 4 files changed, 21 insertions(+), 8 deletions(-)
Title: Binary Gene Operations for Genetic Algorithms
Description: Representation-dependent gene level operations of a
genetic algorithm with binary coded genes
for the R-package 'xega' <https://CRAN.R-project.org/package=xega>:
Initialization of random binary genes, several gene maps for
binary genes, several mutation operators, several crossover
operators with 1 and 2 kids, replication
pipelines for 1 and 2 kids, and, last but not least, function
factories for configuration.
See Goldberg, D. E. (1989, ISBN:0-201-15767-5).
For crossover operators, see
Syswerda, G. (1989, ISBN:1-55860-066-3),
Spears, W. and De Jong, K. (1991, ISBN:1-55860-208-9).
For mutation operators, see
Stanhope, S. A. and Daida, J. M. (1996, ISBN:0-18-201-031-7).
For 'xega''s architecture,
see Geyer-Schulz, A. (2025) <doi:10.5445/IR/1000187255>.
Author: Andreas Geyer-Schulz [aut, cre]
Maintainer: Andreas Geyer-Schulz <Andreas.Geyer-Schulz@kit.edu>
Diff between xegaGaGene versions 1.0.0.5 dated 2025-08-22 and 1.0.0.6 dated 2026-02-16
DESCRIPTION | 13 +- MD5 | 31 +++-- NAMESPACE | 10 + NEWS | 6 + R/xegaGaCrossover.R | 10 - R/xegaGaReplicate.R | 196 +++++++++++++++++++++++++++++++++++ R/xegaOperatorPipelinesInGene.R |only man/newCross2Mut1PipelineG.Rd |only man/newCross2Mut2PipelineG.Rd |only man/newCross2PipelineG.Rd |only man/newCrossMut2PipelineG.Rd |only man/newCrossMutPipelineG.Rd |only man/newCrossPipelineG.Rd |only man/newMutPipelineG.Rd |only man/newPipelineG.Rd |only man/xegaGaReplicate2Gene.Rd | 4 man/xegaGaReplicate2GenePipeline.Rd | 4 man/xegaGaReplicate2GenePipelineG.Rd |only man/xegaGaReplicateGene.Rd | 4 man/xegaGaReplicateGenePipeline.Rd | 4 man/xegaGaReplicateGenePipelineG.Rd |only man/xegaGaReplicationFactory.Rd | 4 22 files changed, 262 insertions(+), 24 deletions(-)
Title: Gene Operations for Real-Coded Genes
Description: Representation-dependent gene-level operations
for genetic and evolutionary algorithms with real-coded genes
used in the R-package 'xega' <https://CRAN.R-project.org/package=xega>
are collected in this package. The common feature of the gene
operations is that all of them are useful for derivation-free
optimization algorithms. At the moment the package
implements initialization, mutation, crossover, and replication
operations for differential evolution as described in
Price, Kenneth V., Storn, Rainer M. and Lampinen, Jouni A. (2005)
<doi:10.1007/3-540-31306-0>. In addition, several (more recent)
methods for determining the scale factor are provided.
For 'xega''s architecture,
see Geyer-Schulz, A. (2025) <doi:10.5445/IR/1000187255>.
Author: Andreas Geyer-Schulz [aut, cre]
Maintainer: Andreas Geyer-Schulz <Andreas.Geyer-Schulz@kit.edu>
Diff between xegaDfGene versions 1.0.0.7 dated 2025-08-22 and 1.0.0.9 dated 2026-02-16
DESCRIPTION | 11 ++- MD5 | 15 ++-- NAMESPACE | 1 NEWS | 12 +++ R/xegaDfReplicate.R | 109 +++++++++++++++++++++++++++++++++- man/xegaDfReplicateGeneDE.Rd | 8 ++ man/xegaDfReplicateGeneDEPipeline.Rd | 8 ++ man/xegaDfReplicateGeneDEPipelineG.Rd |only man/xegaDfReplicationFactory.Rd | 2 9 files changed, 151 insertions(+), 15 deletions(-)
Title: Sequential Trial Emulation
Description: Implementation of sequential trial emulation for the analysis of observational databases.
The 'SEQTaRget' software accommodates time-varying treatments and confounders, as well as binary
and failure time outcomes. 'SEQTaRget' allows to compare both static and dynamic strategies,
can be used to estimate observational analogs of intention-to-treat
and per-protocol effects, and can adjust for potential selection bias
induced by losses-to-follow-up. (Paper to come).
Author: Ryan O'Dea [aut, cre] ,
Alejandro Szmulewicz [aut] ,
Tom Palmer [aut] ,
Miguel Hernan [aut] ,
The President and Fellows of Harvard College [cph]
Maintainer: Ryan O'Dea <ryan.odea@psi.ch>
Diff between SEQTaRget versions 1.3.5 dated 2026-02-05 and 1.3.6 dated 2026-02-16
DESCRIPTION | 6 +- MD5 | 14 +++--- NEWS.md | 4 + R/internal_analysis.R | 1 R/internal_hazard.R | 3 - inst/doc/SEQuential.html | 94 +++++++++++++++++++++---------------------- inst/doc/censoring.html | 2 tests/testthat/test_hazard.R | 31 ++++++++++++++ 8 files changed, 96 insertions(+), 59 deletions(-)
Title: Conjoint Analysis with Reliability Correction and Visualization
Description: Provides tools for analyzing data generated from conjoint survey experiments, a method widely used in the social sciences for studying multidimensional preferences. The package implements estimation of marginal means (MMs) and average marginal component effects (AMCEs), with corrections for measurement error. Methods include profile-level and choice-level estimators, bias correction using intra-respondent reliability (IRR), and visualization utilities. For details on the methodology, see Clayton, Horiuchi, Kaufman, King, and Komisarchik (2025) <https://gking.harvard.edu/conjointE>.
Author: Yusaku Horiuchi [aut, cre] ,
Aaron Kaufman [aut] ,
Gary King [aut]
Maintainer: Yusaku Horiuchi <yusaku.horiuchi@gmail.com>
Diff between projoint versions 1.0.6 dated 2025-10-29 and 1.1.0 dated 2026-02-16
DESCRIPTION | 10 - MD5 | 36 +++--- NEWS.md | 17 ++ R/reshape_projoint.R | 283 +++++++++++++++++++++++++++--------------------- README.md | 7 - build/vignette.rds |binary inst/CITATION | 6 - inst/doc/analyze.html | 9 - inst/doc/explore.Rmd | 2 inst/doc/explore.html | 7 - inst/doc/faq.Rmd | 2 inst/doc/faq.html | 11 + inst/doc/read.html | 9 - inst/doc/structure.Rmd | 125 +++++++++++++-------- inst/doc/structure.html | 268 ++++++++++++++++++++++++--------------------- man/reshape_projoint.Rd | 2 vignettes/explore.Rmd | 2 vignettes/faq.Rmd | 2 vignettes/structure.Rmd | 125 +++++++++++++-------- 19 files changed, 537 insertions(+), 386 deletions(-)
Title: NASCAR Race Data
Description: A collection of NASCAR race, driver, owner and manufacturer
data across the three major NASCAR divisions: NASCAR Cup Series, NXS,
and NASCAR Craftsman Truck Series. The curated
data begins with the 1949 season and is updated weekly during the
racing season. Explore race, season, or career performance for drivers,
teams, and manufacturers throughout NASCAR's history. Data was sourced
with permission from DriverAverages.com.
Author: Kyle Grealis [aut, cre] ,
Nick Triplett [ctb],
Gabriel Odom [ctb]
Maintainer: Kyle Grealis <kylegrealis@proton.me>
Diff between nascaR.data versions 3.0.0 dated 2026-02-14 and 3.0.1 dated 2026-02-16
DESCRIPTION | 6 +-- MD5 | 28 +++++++------- NEWS.md | 14 +++++-- R/cache.R | 40 +++++++++----------- R/data.R | 65 ++++++---------------------------- README.md | 12 +++--- inst/doc/a-race-winning-strategy.html | 14 +++---- inst/doc/migrating-to-nxs.R | 8 +--- inst/doc/migrating-to-nxs.Rmd | 23 +++--------- inst/doc/migrating-to-nxs.html | 41 ++++++++------------- inst/validation/validate_data.R | 2 - man/clear_cache.Rd | 11 +++-- man/load_series.Rd | 25 +++++-------- tests/testthat/test-data.R | 16 -------- vignettes/migrating-to-nxs.Rmd | 23 +++--------- 15 files changed, 122 insertions(+), 206 deletions(-)
Title: Event History Procedures and Models
Description: Functions for setting up and analyzing event history data.
Author: Bruce Swihart [cre, aut],
Jim Lindsey [aut]
Maintainer: Bruce Swihart <bruce.swihart@gmail.com>
Diff between event versions 1.1.1 dated 2018-05-24 and 1.1.2 dated 2026-02-16
DESCRIPTION | 12 +++---- MD5 | 16 ++++++---- NAMESPACE | 37 ++++++++++++++--------- NEWS.md | 85 +++++++++++++++++++++++++++---------------------------- R/survkit.r |only README.md | 6 +-- man/event.Rd | 2 - man/survkit.Rd |only src/event_init.c | 17 +++++++++-- src/parinclu.h |only src/survkit.f |only 11 files changed, 99 insertions(+), 76 deletions(-)
Title: Cancer RADAR Project Tool
Description: Cancer RADAR is a project which aim is to develop an
infrastructure that allows quantifying the risk of cancer by migration
background across Europe. This package contains a set of functions
cancer registries partners should use to reshape 5 year-age group
cancer incidence data into a set of summary statistics (see Boyle &
Parkin (1991, ISBN:978-92-832-1195-2)) in lines with Cancer RADAR data
protections rules.
Author: Nienke Alberts [aut],
Damien Georges [aut, cre] ,
Stefano Rosso [aut],
Iacopo Baussano [aut]
Maintainer: Damien Georges <georgesd@iarc.who.int>
Diff between cancerradarr versions 2.1.0 dated 2025-11-10 and 3.0.0 dated 2026-02-16
DESCRIPTION | 8 - MD5 | 14 +- NAMESPACE | 2 NEWS.md | 6 R/create_canradar_summary_file.R | 250 +++++++++++++++++++++------------------ R/custom_ageg_aggregation.R | 60 ++++++++- R/diagnose_input_file.R |only R/validate_age_groups.R |only man/diagnose_input_file.Rd |only man/validate_age_groups.Rd |only 10 files changed, 209 insertions(+), 131 deletions(-)
Title: Query Composite Hypotheses
Description: Provides functions for the joint analysis of Q sets of
p-values obtained for the same list of items. This joint analysis is
performed by querying a composite hypothesis, i.e. an arbitrary
complex combination of simple hypotheses, as described in Mary-Huard
et al. (2021) <doi:10.1093/bioinformatics/btab592> and De Walsche et
al.(2025) <doi: 10.1093/nargab/lqaf118>. In this approach, the Q-uplet
of p-values associated with each item is distributed as a multivariate
mixture, where each of the 2^Q components corresponds to a specific
combination of simple hypotheses. The dependence between the p-value
series is considered using a Gaussian copula function. A p-value for
the composite hypothesis test is derived from the posterior
probabilities.
Author: Tristan Mary-Huard [aut, cre] ,
Annaig De Walsche [aut] ,
Franck Gauthier [ctb]
Maintainer: Tristan Mary-Huard <tristan.mary-huard@agroparistech.fr>
Diff between qch versions 2.1.0 dated 2025-07-04 and 2.1.2 dated 2026-02-16
DESCRIPTION | 32 +- MD5 | 46 +-- NAMESPACE | 32 +- R/EM_functions.R | 12 R/FastKerFDR_functions.R | 479 +++++++++++++++++---------------- R/GetHinfo.R | 8 R/RcppExports.R | 156 +++++----- R/qch_fit.R | 2 R/qch_test.R | 16 - build/partial.rdb |binary man/Copula.Hconfig_gaussian_density.Rd | 2 man/EM_calibration_gaussian.Rd | 2 man/EM_calibration_gaussian_memory.Rd | 2 man/EM_calibration_indep_memory.Rd | 2 man/FastKerFdr_signed.Rd | 30 -- man/FastKerFdr_unsigned.Rd | 29 - man/GetH1AtLeast.Rd | 4 man/GetH1Equal.Rd | 4 man/R.MLE.Rd | 2 man/R.MLE.memory.Rd | 2 man/f1_separation_signed.Rd | 24 - man/qch-package.Rd | 2 man/qch.fit.Rd | 2 man/qch.test.Rd | 8 24 files changed, 459 insertions(+), 439 deletions(-)
Title: Piece-Wise Exponential Additive Mixed Modeling Tools for
Survival Analysis
Description: The Piece-wise exponential (Additive Mixed) Model
(PAMM; Bender and others (2018) <doi: 10.1177/1471082X17748083>) is a
powerful model class for the analysis of survival (or time-to-event) data,
based on Generalized Additive (Mixed) Models (GA(M)Ms).
It offers intuitive specification and robust estimation of complex survival
models with stratified baseline hazards, random effects, time-varying effects,
time-dependent covariates and cumulative effects (Bender and others (2019)),
as well as support for left-truncated data as well as competing risks,
recurrent events and multi-state settings.
pammtools provides tidy workflow for survival analysis with PAMMs,
including data simulation, transformation and other functions for data
preprocessing and model post-processing as well as visualization.
Author: Andreas Bender [aut, cre] ,
Fabian Scheipl [aut] ,
Johannes Piller [aut] ,
Philipp Kopper [aut] ,
Lukas Burk [ctb]
Maintainer: Andreas Bender <andreas.bender@stat.uni-muenchen.de>
Diff between pammtools versions 0.7.3 dated 2025-03-24 and 0.7.4 dated 2026-02-16
DESCRIPTION | 21 ++++---- MD5 | 28 +++++------ NEWS.md | 18 +++++++ R/add-functions.R | 51 +++++++++++++++++++-- R/as-ped.R | 15 ++++-- R/get-cut-points.R | 6 ++ R/pammfit.R | 5 ++ R/zzz.R | 2 man/add_trans_prob.Rd | 86 ++++++++++++++++++------------------ man/geom_hazard.Rd | 8 ++- man/geom_stepribbon.Rd | 8 ++- man/rpexp.Rd | 9 --- tests/testthat/test-add-functions.R | 45 ++++++++++++++++++ tests/testthat/test-as-ped-cr.R | 21 ++++++++ tests/testthat/test-pamm-fit.R | 4 + 15 files changed, 235 insertions(+), 92 deletions(-)
Title: A Metadata and Text Extraction and Manipulation Tool Set
Description: Provides a function collection to extract metadata, sectioned text and study characteristics from scientific articles in 'NISO-JATS' format. Articles in PDF format can be converted to 'NISO-JATS' with the 'Content ExtRactor and MINEr' ('CERMINE', <https://github.com/CeON/CERMINE>). For convenience, two functions bundle the extraction heuristics: JATSdecoder() converts 'NISO-JATS'-tagged XML files to a structured list with elements title, author, journal, history, 'DOI', abstract, sectioned text and reference list. study.character() extracts multiple study characteristics like number of included studies, statistical methods used, alpha error, power, statistical results, correction method for multiple testing, software used. The function get.stats() extracts all statistical results from text and recomputes p-values for many standard test statistics. It performs a consistency check of the reported with the recalculated p-values. An estimation of the involved sample size is performed [...truncated...]
Author: Ingmar Boeschen [aut, cre]
Maintainer: Ingmar Boeschen <ingmar.boeschen@uni-hamburg.de>
Diff between JATSdecoder versions 1.2.2 dated 2026-01-07 and 1.3.0 dated 2026-02-16
DESCRIPTION | 8 +- MD5 | 8 +- R/character_get.alpha.error.R | 124 ++++++++++++++++-------------------------- R/character_standardStats.R | 87 +++++++++++++++++------------ R/helper_letter.convert.R | 3 + 5 files changed, 111 insertions(+), 119 deletions(-)
Title: LiDAR Data Voxelisation
Description: Read, manipulate and write voxel spaces. Voxel spaces are
read from text-based output files of the 'AMAPVox' software. 'AMAPVox'
is a LiDAR point cloud voxelisation software that aims at estimating
leaf area through several theoretical/numerical approaches. See more
in the article Vincent et al. (2017) <doi:10.23708/1AJNMP> and the
technical note Vincent et al. (2021) <doi:10.23708/1AJNMP>.
Author: Gregoire Vincent [aut],
Julien Heurtebize [aut],
Philippe Verley [aut, cre]
Maintainer: Philippe Verley <philippe.verley@ird.fr>
Diff between AMAPVox versions 2.2.1 dated 2024-03-15 and 2.4.2 dated 2026-02-16
DESCRIPTION | 6 +-- MD5 | 38 +++++++++++----------- NEWS.md | 77 ++++++++++++++++++++++++++++++++++++++++++--- R/PlotVoxelSpace.R | 23 ++++++++++--- R/Run.R | 9 +++-- R/VersionManager.R | 58 +++++++++++++++++---------------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/AMAPVox.html | 3 + inst/doc/Installation.Rmd | 2 - inst/doc/Installation.html | 10 +++-- inst/doc/Publications.html | 9 ++--- inst/doc/Voxelization.Rmd | 4 +- inst/doc/Voxelization.html | 7 ++-- inst/doc/amapvox-gui.html | 33 +++++++++---------- man/getRemoteVersions.Rd | 4 +- man/plot.Rd | 4 ++ man/run.Rd | 7 ++-- vignettes/Installation.Rmd | 2 - vignettes/Voxelization.Rmd | 4 +- 20 files changed, 198 insertions(+), 102 deletions(-)
Title: R Graphics Devices for 'Office' Vector Graphics Output
Description: Vector Graphics devices for 'Microsoft PowerPoint' and
'Microsoft Excel'. Functions extending package 'officer' are provided
to embed 'DrawingML' graphics into 'Microsoft PowerPoint'
presentations and 'Microsoft Excel' workbooks.
Author: David Gohel [aut, cre],
ArData [cph],
Bob Rudis [ctb] ,
Francois Brunetti [ctb]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between rvg versions 0.4.0 dated 2025-10-06 and 0.4.1 dated 2026-02-16
DESCRIPTION | 8 - MD5 | 51 ++++----- NAMESPACE | 2 NEWS.md | 42 +++++++ R/dml_pptx.R | 16 ++- R/dml_xlsx.R | 27 +++-- R/fonts.R | 55 +++------- R/ph_with_vg.R | 42 ++++++- R/xl_add_vg.R | 26 ++-- README.md | 8 - inst/test-rvg.R |only man/dml.Rd | 39 ++++++- man/dml_pptx.Rd | 16 ++- man/dml_xlsx.Rd | 24 ++-- man/ph_with.dml.Rd | 4 man/xl_add_vg.Rd | 7 - src/main_tree.cpp | 1 src/ppr.cpp | 1 src/pptx.cpp | 43 +++++++- src/raster.cpp | 3 src/rpr.cpp | 4 src/shapes.cpp | 201 ++++++++++++++++++++++++++++++++++++-- src/write_nv_pr.cpp | 1 src/xlsx.cpp | 49 ++++++++- tests/testthat/test-pptx-text.R | 4 tests/testthat/test-xlsx-raster.R | 11 +- tests/testthat/test-xlsx-text.R | 4 27 files changed, 534 insertions(+), 155 deletions(-)
Title: Demographic Analysis and Data Manipulation
Description: Perform tasks commonly encountered when
preparing and analysing demographic data.
Some functions are intended for end users, and
others for developers. Includes functions for
working with life tables.
Author: John Bryant [aut, cre],
Bayesian Demography Limited [cph]
Maintainer: John Bryant <john@bayesiandemography.com>
Diff between poputils versions 0.5.0 dated 2026-01-12 and 0.6.1 dated 2026-02-16
poputils-0.5.0/poputils/tests/testthat/test-ex_to_lifetab.R |only poputils-0.6.1/poputils/DESCRIPTION | 10 poputils-0.6.1/poputils/MD5 | 42 poputils-0.6.1/poputils/NAMESPACE | 1 poputils-0.6.1/poputils/NEWS.md | 27 poputils-0.6.1/poputils/R/check-functions.R | 26 poputils-0.6.1/poputils/R/e0_to_lifetab.R |only poputils-0.6.1/poputils/R/ex_to_lifetab.R | 425 ---------- poputils-0.6.1/poputils/R/intrinsic_growth_rate.R | 58 + poputils-0.6.1/poputils/R/poputils-package.R | 4 poputils-0.6.1/poputils/R/tfr_to_asfr.R | 59 - poputils-0.6.1/poputils/README.md | 4 poputils-0.6.1/poputils/inst/doc/poputils.R | 4 poputils-0.6.1/poputils/inst/doc/poputils.Rmd | 43 - poputils-0.6.1/poputils/inst/doc/poputils.html | 50 - poputils-0.6.1/poputils/man/dot-intrinsic_growth_rate.Rd | 9 poputils-0.6.1/poputils/man/e0_to_lifetab_logit.Rd |only poputils-0.6.1/poputils/man/ex_to_lifetab_brass.Rd | 132 --- poputils-0.6.1/poputils/man/poputils-package.Rd | 4 poputils-0.6.1/poputils/man/tfr_to_asfr_scale.Rd | 60 - poputils-0.6.1/poputils/tests/testthat/test-check-functions.R | 106 +- poputils-0.6.1/poputils/tests/testthat/test-e0_to_lifetab.R |only poputils-0.6.1/poputils/tests/testthat/test-intrinsic_growth_rate.R | 80 + poputils-0.6.1/poputils/vignettes/poputils.Rmd | 43 - 24 files changed, 389 insertions(+), 798 deletions(-)
Title: Prototype of Multiple Latent Dirichlet Allocation Runs
Description: Determine a Prototype from a number of runs of Latent Dirichlet Allocation (LDA) measuring its similarities with S-CLOP: A procedure to select the LDA run with highest mean pairwise similarity, which is measured by S-CLOP (Similarity of multiple sets by Clustering with Local Pruning), to all other runs. LDA runs are specified by its assignments leading to estimators for distribution parameters. Repeated runs lead to different results, which we encounter by choosing the most representative LDA run as prototype.
Author: Jonas Rieger [aut, cre]
Maintainer: Jonas Rieger <jonas.rieger@tu-dortmund.de>
Diff between ldaPrototype versions 0.3.1 dated 2021-09-02 and 0.3.2 dated 2026-02-16
DESCRIPTION | 15 ++++++++------- MD5 | 42 +++++++++++++++++++++--------------------- R/LDARep.R | 4 ++-- R/SCLOP.R | 2 +- R/cosineTopics.R | 4 ++-- R/dendTopics.R | 2 +- R/jaccardTopics.R | 4 ++-- R/jsTopics.R | 4 ++-- R/ldaPrototype-package.R | 6 +++--- R/rboTopics.R | 7 +++---- README.md | 10 ++++++---- build/partial.rdb |binary inst/CITATION | 2 +- man/LDABatch.Rd | 2 +- man/LDAPrototype.Rd | 2 +- man/LDARep.Rd | 4 ++-- man/cosineTopics.Rd | 2 +- man/getTopics.Rd | 4 ++-- man/jaccardTopics.Rd | 2 +- man/jsTopics.Rd | 2 +- man/ldaPrototype-package.Rd | 6 +++--- man/rboTopics.Rd | 5 ++--- 22 files changed, 66 insertions(+), 65 deletions(-)
Title: Holistic Multimodel Domain Analysis for Exploratory Machine
Learning
Description: Holistic Multimodel Domain Analysis (HMDA) is a robust and transparent framework designed for exploratory machine learning research, aiming to enhance the process of feature assessment and selection. HMDA addresses key limitations of traditional machine learning methods by evaluating the consistency across multiple high-performing models within a fine-tuned modeling grid, thereby improving the interpretability and reliability of feature importance assessments. Specifically, it computes Weighted Mean SHapley Additive exPlanations (WMSHAP), which aggregate feature contributions from multiple models based on weighted performance metrics. HMDA also provides confidence intervals to demonstrate the stability of these feature importance estimates. This framework is particularly beneficial for analyzing complex, multidimensional datasets common in health research, supporting reliable exploration of mental health outcomes such as suicidal ideation, suicide attempts, and other psychological cond [...truncated...]
Author: E. F. Haghish [aut, cre, cph]
Maintainer: E. F. Haghish <haghish@hotmail.com>
Diff between HMDA versions 0.1.1 dated 2025-09-18 and 0.2.0 dated 2026-02-16
HMDA-0.1.1/HMDA/man/list_hyperparameter.Rd |only HMDA-0.2.0/HMDA/DESCRIPTION | 11 - HMDA-0.2.0/HMDA/MD5 | 83 +++++---- HMDA-0.2.0/HMDA/NAMESPACE | 35 +--- HMDA-0.2.0/HMDA/R/best_of_family.R | 5 HMDA-0.2.0/HMDA/R/check_efa.R | 22 +- HMDA-0.2.0/HMDA/R/hmda.adjust.params.R | 17 +- HMDA-0.2.0/HMDA/R/hmda.autoEnsemble.R | 31 +-- HMDA-0.2.0/HMDA/R/hmda.best.models.R | 221 ++++++++++++++++++-------- HMDA-0.2.0/HMDA/R/hmda.compare.shap.plot.R |only HMDA-0.2.0/HMDA/R/hmda.domain.R | 57 ++---- HMDA-0.2.0/HMDA/R/hmda.efa.R | 42 ---- HMDA-0.2.0/HMDA/R/hmda.feature.selection.R | 6 HMDA-0.2.0/HMDA/R/hmda.grid.R | 41 ++-- HMDA-0.2.0/HMDA/R/hmda.grid.analysis.R | 26 +-- HMDA-0.2.0/HMDA/R/hmda.init.R | 11 - HMDA-0.2.0/HMDA/R/hmda.partition.R | 11 - HMDA-0.2.0/HMDA/R/hmda.plot.R |only HMDA-0.2.0/HMDA/R/hmda.plot.metrics.R |only HMDA-0.2.0/HMDA/R/hmda.search.param.R | 10 - HMDA-0.2.0/HMDA/R/hmda.suggest.param.R | 19 +- HMDA-0.2.0/HMDA/R/hmda.test.R |only HMDA-0.2.0/HMDA/R/hmda.wmshap.R | 73 +++----- HMDA-0.2.0/HMDA/R/hmda.wmshap.table.R | 83 +++------ HMDA-0.2.0/HMDA/R/list_hyperparameter.R | 5 HMDA-0.2.0/HMDA/R/suggest_mtries.R | 1 HMDA-0.2.0/HMDA/R/zzz.R | 6 HMDA-0.2.0/HMDA/README.md | 9 - HMDA-0.2.0/HMDA/man/best_of_family.Rd | 5 HMDA-0.2.0/HMDA/man/check_efa.Rd | 13 + HMDA-0.2.0/HMDA/man/hmda.adjust.params.Rd | 2 HMDA-0.2.0/HMDA/man/hmda.autoEnsemble.Rd | 21 +- HMDA-0.2.0/HMDA/man/hmda.best.models.Rd | 115 ++++++++----- HMDA-0.2.0/HMDA/man/hmda.compare.shap.plot.Rd |only HMDA-0.2.0/HMDA/man/hmda.domain.Rd | 44 ++--- HMDA-0.2.0/HMDA/man/hmda.feature.selection.Rd | 6 HMDA-0.2.0/HMDA/man/hmda.grid.Rd | 22 +- HMDA-0.2.0/HMDA/man/hmda.grid.analysis.Rd | 4 HMDA-0.2.0/HMDA/man/hmda.init.Rd | 9 - HMDA-0.2.0/HMDA/man/hmda.partition.Rd | 9 - HMDA-0.2.0/HMDA/man/hmda.plot.Rd |only HMDA-0.2.0/HMDA/man/hmda.plot.metrics.Rd |only HMDA-0.2.0/HMDA/man/hmda.search.param.Rd | 10 - HMDA-0.2.0/HMDA/man/hmda.suggest.param.Rd | 16 + HMDA-0.2.0/HMDA/man/hmda.test.Rd |only HMDA-0.2.0/HMDA/man/hmda.wmshap.Rd | 32 +-- HMDA-0.2.0/HMDA/man/hmda.wmshap.table.Rd | 44 ++--- 47 files changed, 619 insertions(+), 558 deletions(-)
Title: C++ Interface to PostgreSQL
Description: Fully DBI-compliant C++-backed interface to PostgreSQL
<https://www.postgresql.org/>, an open-source relational database.
Author: Hadley Wickham [aut],
Jeroen Ooms [aut],
Kirill Mueller [aut, cre] ,
RStudio [cph],
R Consortium [fnd],
Tomoaki Nishiyama [ctb]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between RPostgres versions 1.4.9 dated 2026-02-06 and 1.4.10 dated 2026-02-16
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 7 +++++++ src/DbConnection.cpp | 2 ++ src/PqResultImpl.cpp | 1 + 5 files changed, 18 insertions(+), 8 deletions(-)
Title: Risk Regression Models and Prediction Scores for Survival
Analysis with Competing Risks
Description: Implementation of the following methods for event history analysis.
Risk regression models for survival endpoints also in the presence of competing
risks are fitted using binomial regression based on a time sequence of binary
event status variables. A formula interface for the Fine-Gray regression model
and an interface for the combination of cause-specific Cox regression models.
A toolbox for assessing and comparing performance of risk predictions (risk
markers and risk prediction models). Prediction performance is measured by the
Brier score and the area under the ROC curve for binary possibly time-dependent
outcome. Inverse probability of censoring weighting and pseudo values are used
to deal with right censored data. Lists of risk markers and lists of risk models
are assessed simultaneously. Cross-validation repeatedly splits the data, trains
the risk prediction models on one part of each split and then summarizes and
compares the performance across splits.
Author: Thomas Alexander Gerds [aut, cre],
Johan Sebastian Ohlendorff [aut],
Paul Blanche [ctb],
Rikke Mortensen [ctb],
Marvin Wright [ctb],
Nikolaj Tollenaar [ctb],
John Muschelli [ctb],
Ulla Brasch Mogensen [ctb],
Asbjoern Risom [ctb],
Brice Ozenne [aut]
Maintainer: Thomas Alexander Gerds <tag@biostat.ku.dk>
Diff between riskRegression versions 2025.09.17 dated 2025-09-17 and 2026.02.13 dated 2026-02-16
DESCRIPTION | 6 MD5 | 86 +++--- NAMESPACE | 1 R/AUC.binary.R | 32 +- R/AUC.competing.risks.R | 6 R/AUC.survival.R | 6 R/Brier.binary.R | 6 R/Brier.competing.risks.R | 4 R/CSC.R | 4 R/GLMnet.R | 2 R/HAL9001.R | 69 +++-- R/IPACompute.R | 92 +++--- R/Score.R | 567 ++++++++++++------------------------------- R/ate-bootstrap.R | 17 - R/autoplot.Score.R | 10 R/computePerformance.R | 60 ++-- R/coxBaseEstimator.R | 5 R/coxCenter.R | 5 R/coxFormula.R | 4 R/coxLP.R | 5 R/coxModel.Frame.R | 7 R/coxN.R | 5 R/coxSpecial.R | 5 R/coxStrata.R | 5 R/crossvalPerf.loob.AUC.R | 21 - R/crossvalPerf.loob.Brier.R | 58 +--- R/getComparisons.R | 4 R/getLegendData.R | 4 R/getPerformanceData.R | 9 R/iidCox.R | 1 R/plotAUC.R | 4 R/plotCalibration.R | 35 +- R/predict.CauseSpecificCox.R | 2 R/predictCox.R | 18 + R/predictRisk.R | 84 +++++- R/summary.Score.R | 20 - R/synthesize.R | 8 build/vignette.rds |binary man/CSC.Rd | 2 man/GLMnet.Rd | 2 man/Hal9001.Rd | 4 man/plotCalibration.Rd | 4 man/predictRisk.Rd | 14 - man/synthesize.Rd | 4 44 files changed, 590 insertions(+), 717 deletions(-)
More information about riskRegression at CRAN
Permanent link
Title: Inferring Chromatin Interaction Modules from 3C-Based Data
Description: Identifies chromatin interaction modules by constructing a Hi-C contact network based on statistically significant interactions, followed by network clustering. The method enables comparison of module connectivity across two Hi-C datasets and is capable of detecting cell-type-specific regulatory modules. By integrating network analysis with chromatin conformation data, this approach provides insights into the spatial organization of the genome and its functional implications in gene regulation. Author: Sora Yoon (2025) <https://github.com/ysora/HiCociety>.
Author: Sora Yoon [aut, cre]
Maintainer: Sora Yoon <ysora90@gmail.com>
Diff between HiCociety versions 0.1.38 dated 2025-05-13 and 0.1.39 dated 2026-02-16
DESCRIPTION | 32 +++++++------ MD5 | 9 ++- R/get_example_hic_file.R |only R/main.R | 100 +++++++++++++++++++++---------------------- inst/example.hic |only man/getContactProbability.Rd | 2 man/get_example_hic_file.Rd |only 7 files changed, 74 insertions(+), 69 deletions(-)
Title: Extreme Value Analyses with Missing Data
Description: Performs likelihood-based extreme value inferences with
adjustment for the presence of missing values based on Simpson and
Northrop (2026) <doi:10.1002/env.70075>. A Generalised Extreme Value
distribution is fitted to block maxima using maximum likelihood estimation,
with the location and scale parameters reflecting the numbers of
non-missing raw values in each block. A Bayesian version is also provided.
For the purposes of comparison, there are options to make no adjustment for
missing values or to discard any block maximum for which greater than a
percentage of the underlying raw values are missing. Example datasets
containing missing values are provided.
Author: Paul J. Northrop [aut, cre, cph],
Emma S. Simpson [aut, cph]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between evmissing versions 1.0.1 dated 2026-01-28 and 1.0.2 dated 2026-02-16
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/evmissing-package.R | 4 ++-- R/gev_mle.R | 2 +- README.md | 10 +++++----- man/evmissing-package.Rd | 4 ++-- man/gev_mle.Rd | 2 +- 8 files changed, 27 insertions(+), 23 deletions(-)
Title: Creating and Significance Testing Language Features for
Visualisation
Description: Implements differential language analysis with statistical tests and offers various language visualization techniques for n-grams and topics. It also supports the 'text' package. For more information, visit <https://r-topics.org/> and <https://www.r-text.org/>.
Author: Leon Ackermann [aut] ,
Zhuojun Gu [aut] ,
Oscar Kjell [aut, cre]
Maintainer: Oscar Kjell <oscar.kjell@psy.lu.se>
Diff between topics versions 0.62 dated 2025-08-29 and 0.70 dated 2026-02-16
topics-0.62/topics/man/topicsPreds.Rd |only topics-0.62/topics/tests/testthat/_snaps/1_6_topicsPlot/topics4square2t-1.svg |only topics-0.70/topics/DESCRIPTION | 16 topics-0.70/topics/MD5 | 102 - topics-0.70/topics/NAMESPACE | 21 topics-0.70/topics/NEWS.md | 46 topics-0.70/topics/R/0_globals.R | 5 topics-0.70/topics/R/1_topicsDtm.R | 44 topics-0.70/topics/R/2_1_1_topicsModel_Pred.R | 25 topics-0.70/topics/R/2_2_topicsGrams.R | 1007 ++++++---- topics-0.70/topics/R/3_topicTest.R | 161 + topics-0.70/topics/R/4_1_topicsPlot.R | 398 ++- topics-0.70/topics/R/4_2_wordclouds.R | 70 topics-0.70/topics/R/data_download.R |only topics-0.70/topics/README.md | 77 topics-0.70/topics/build/vignette.rds |binary topics-0.70/topics/inst/doc/extended_installation_guide.Rmd | 42 topics-0.70/topics/inst/doc/extended_installation_guide.html | 147 + topics-0.70/topics/inst/doc/resources.R |only topics-0.70/topics/inst/doc/resources.Rmd |only topics-0.70/topics/inst/doc/resources.html |only topics-0.70/topics/inst/doc/topics.R | 76 topics-0.70/topics/man/topicsDtm.Rd | 18 topics-0.70/topics/man/topicsGrams.Rd | 93 topics-0.70/topics/man/topicsGridLegend.Rd | 6 topics-0.70/topics/man/topicsPlot.Rd | 13 topics-0.70/topics/man/topicsPlotOverview.Rd |only topics-0.70/topics/man/topicsPredict.Rd |only topics-0.70/topics/man/topicsScatterLegend.Rd | 6 topics-0.70/topics/man/topicsTest.Rd | 2 topics-0.70/topics/man/topicsTutorialData.Rd |only topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/1-ngram.svg | 116 - topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/2-ngram-negative.svg | 63 topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/3-ngram-positive.svg | 65 topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/plots-controlled-distribution.svg | 191 - topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/plots-controlled-legend.svg | 28 topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/plots-controlled-square1t-3.svg | 41 topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/topics-overview-plot.svg |only topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/topics-specific-t1.svg | 191 - topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/topics2-overview-plot.svg |only topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/topics4-distribution-logistic.svg | 153 - topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/topics4-distribution.svg | 121 - topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/topics4-legend-logistic.svg | 22 topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/topics4-legend.svg | 22 topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/topics4overview-plot.svg |only topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/topics4square1t-48.svg | 41 topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/topics4square3t-34.svg |only topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/topics5distribution.svg | 191 - topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/topics5legend.svg | 46 topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/topics5overview-plot.svg |only topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/topics5square1.svg | 39 topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/topics5square2.svg | 39 topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/topics5square4.svg | 54 topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/topics5square6.svg | 54 topics-0.70/topics/tests/testthat/_snaps/1_6_topicsPlot/topics5square9.svg | 39 topics-0.70/topics/tests/testthat/test_1_5_topicsTest.R | 6 topics-0.70/topics/tests/testthat/test_1_6_topicsPlot.R | 45 topics-0.70/topics/tests/testthat/test_9_topicTutorialData.R |only topics-0.70/topics/vignettes/extended_installation_guide.Rmd | 42 topics-0.70/topics/vignettes/resources.Rmd |only 60 files changed, 2405 insertions(+), 1579 deletions(-)
Title: Analyses of Text using Transformers Models from HuggingFace,
Natural Language Processing and Machine Learning
Description: Link R with Transformers from Hugging Face to transform text variables to word embeddings; where the word embeddings are used to statistically test the mean difference between set of texts, compute semantic similarity scores between texts, predict numerical variables, and visual statistically significant words according to various dimensions etc. For more information see <https://www.r-text.org>.
Author: Oscar Kjell [aut, cre] ,
Salvatore Giorgi [aut] ,
Andrew Schwartz [aut]
Maintainer: Oscar Kjell <oscar.kjell@psy.lu.se>
Diff between text versions 1.8.0 dated 2026-01-08 and 1.8.1 dated 2026-02-16
DESCRIPTION | 6 MD5 | 16 +- NEWS.md | 5 R/7_1_textTopics.R | 260 +++++++++++++++++++++++++++---------- R/7_2_textTopicsAnalysis.R | 16 +- inst/doc/LBAM.html | 4 inst/python/bert_topic.py | 248 ++++++++++++++++++++++++----------- man/textTopics.Rd | 149 +++++++++++++++------ tests/testthat/test_7_textTopics.R | 151 ++++++++++++++++++--- 9 files changed, 636 insertions(+), 219 deletions(-)
Title: Read Paradox Database Files into R
Description: Provides a simple and efficient way to read data from Paradox
database files (.db) directly into R as modern 'tibble' data frames.
It uses the underlying 'pxlib' C library, to handle the low-level file format
details and provides a clean, user-friendly R interface.
Author: Daniil Popov [aut, cre]
Maintainer: Daniil Popov <popov.daniil@gmail.com>
Diff between Rparadox versions 0.2.1 dated 2026-02-11 and 0.2.2 dated 2026-02-16
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 6 ++++++ src/interface.c | 30 ++++++++++++++++++++++++------ 4 files changed, 36 insertions(+), 12 deletions(-)
Title: An R Interface to the California Academy of Sciences Eschmeyer's
Catalog of Fishes
Description: Accesses the California Academy of Sciences Eschmeyer's Catalog of Fishes in R using web requests. The Catalog of fishes is the leading authority in fish taxonomy. Functions in the package allow users to search for fish taxa and valid names, retrieve taxonomic references, retrieve monthly taxonomic changes, obtain natural history collection information, and see the number of species by taxonomic group. For more information on the Catalog: Fricke, R., Eschmeyer, W. N. & R. van der Laan (eds) 2025. ESCHMEYER'S CATALOG OF FISHES <https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp>.
Author: Samuel R. Borstein [aut, cre],
Brandon Dominy [aut],
Brian O'Meara [aut]
Maintainer: Samuel R. Borstein <sam@borstein.com>
Diff between rcatfish versions 1.0.0 dated 2026-02-03 and 1.0.1 dated 2026-02-16
DESCRIPTION | 8 - MD5 | 17 +- NEWS.md |only R/rcatfish_search.R | 200 +++++++++++++++++---------------- R/rcatfish_updates.R | 8 - inst/doc/rcatfish-vignette.Rmd | 18 +- inst/doc/rcatfish-vignette.html | 23 +-- man/rcatfish_search.Rd | 10 - tests/testthat/test_rcatfish_updates.R | 2 vignettes/rcatfish-vignette.Rmd | 18 +- 10 files changed, 163 insertions(+), 141 deletions(-)
Title: Multiverse Analysis of Multinomial Processing Tree Models
Description: Statistical or cognitive modeling usually requires a number of more or less
arbitrary choices creating one specific path through a 'garden of forking paths'.
The multiverse approach (Steegen, Tuerlinckx, Gelman, & Vanpaemel, 2016,
<doi:10.1177/1745691616658637>) offers a principled alternative in which results
for all possible combinations of reasonable modeling choices are reported.
MPTmultiverse performs a multiverse analysis for multinomial processing tree
(MPT, Riefer & Batchelder, 1988, <doi:10.1037/0033-295X.95.3.318>) models combining
maximum-likelihood/frequentist and Bayesian estimation approaches with
different levels of pooling (i.e., data aggregation) as described in
Singmann et al. (2024, <doi:10.1037/bul0000434>). For the
frequentist approaches, no pooling (with and without parametric or nonparametric
bootstrap) and complete pooling are implemented using
MPTinR <https://cran.r-project.org/package=MPTinR>.
For the Bayesian approaches, no poo [...truncated...]
Author: Henrik Singmann [aut, cre] ,
Daniel W. Heck [aut],
Marius Barth [aut] ,
Frederik Aust [ctb]
Maintainer: Henrik Singmann <singmann@gmail.com>
This is a re-admission after prior archival of version 0.4-2 dated 2020-06-24
Diff between MPTmultiverse versions 0.4-2 dated 2020-06-24 and 0.4-3 dated 2026-02-16
DESCRIPTION | 28 MD5 | 35 NEWS.md | 3 R/check_results.R | 12 R/fit_mpt.R | 123 +- R/make_results_row.R | 9 R/mpt_options.R | 34 R/mptinr.R | 22 R/plot_multiverseMPT.R | 14 R/treebugs.R | 4 README.md | 4 build/partial.rdb |only build/vignette.rds |binary inst/doc/introduction-bayen_kuhlmann_2011.R | 36 inst/doc/introduction-bayen_kuhlmann_2011.html | 1092 ++++++++++--------------- inst/doc/introduction-bayen_kuhlmann_2011.rmd | 2 man/fit_mpt.Rd | 152 +-- man/mpt_options.Rd | 32 vignettes/introduction-bayen_kuhlmann_2011.rmd | 2 19 files changed, 725 insertions(+), 879 deletions(-)
Title: Easy Analysis and Visualization of Factorial Experiments
Description: Facilitates easy analysis of factorial experiments, including
purely within-Ss designs (a.k.a. "repeated measures"), purely between-Ss
designs, and mixed within-and-between-Ss designs. The functions in this package
aim to provide simple, intuitive and consistent specification of data analysis
and visualization. Visualization functions also include design visualization for
pre-analysis data auditing, and correlation matrix visualization. Finally, this
package includes functions for non-parametric analysis, including permutation
tests and bootstrap resampling. The bootstrap function obtains predictions
either by cell means or by more advanced/powerful mixed effects models, yielding
predictions and confidence intervals that may be easily visualized at any level
of the experiment's design.
Author: Michael A. Lawrence [aut],
Valentin Koob [cre]
Maintainer: Valentin Koob <v.koob@web.de>
This is a re-admission after prior archival of version 4.4-0 dated 2016-11-02
Diff between ez versions 4.4-0 dated 2016-11-02 and 4.5-0 dated 2026-02-16
CHANGES | 396 ++++++------- DESCRIPTION | 27 MD5 | 68 +- NAMESPACE | 73 +- R/ez-internal.R | 1476 ++++++++++++++++++++++++------------------------- R/ezANOVA.R | 182 +++--- R/ezBoot.R | 396 ++++++------- R/ezCor.R | 466 +++++++-------- R/ezDesign.R | 302 +++++----- R/ezMixed.R | 1230 ++++++++++++++++++++-------------------- R/ezMixedProgress.R | 90 +- R/ezPerm.R | 288 ++++----- R/ezPlot.R | 586 +++++++++---------- R/ezPlot2.R | 676 +++++++++++----------- R/ezPrecis.R | 140 ++-- R/ezPredict.R | 302 +++++----- R/ezResample.R | 228 +++---- R/ezStats.R | 230 +++---- man/ANT.Rd | 74 +- man/ANT2.Rd | 38 - man/ez-internal.Rd | 30 man/ez-package.Rd | 88 +- man/ezANOVA.Rd | 464 +++++++-------- man/ezBoot.Rd | 236 +++---- man/ezCor.Rd | 280 ++++----- man/ezDesign.Rd | 182 +++--- man/ezMixed.Rd | 328 +++++----- man/ezMixedProgress.Rd | 114 +-- man/ezPerm.Rd | 218 +++---- man/ezPlot.Rd | 630 ++++++++++---------- man/ezPlot2.Rd | 244 ++++---- man/ezPrecis.Rd | 114 +-- man/ezPredict.Rd | 152 ++--- man/ezResample.Rd | 196 +++--- man/ezStats.Rd | 232 +++---- 35 files changed, 5400 insertions(+), 5376 deletions(-)
Title: Discover and Call 'Bund.dev' APIs
Description: Provides a registry of APIs listed on <https://bund.dev> and a core
'OpenAPI' client layer to explore specs and perform requests. Adapter helpers
return tidy tibbles for supported APIs, with optional response caching and
rate limiting guidance.
Author: Michael Buecker [aut, cre]
Maintainer: Michael Buecker <michael.buecker@fh-muenster.de>
Diff between bunddev versions 0.2.0 dated 2026-02-13 and 0.2.1 dated 2026-02-16
DESCRIPTION | 14 - MD5 | 34 ++-- R/core_cache.R | 6 R/core_call.R | 3 R/core_openapi.R | 8 R/core_tidy.R | 3 README.md | 283 +++++++++++++++++++++++----------- man/bunddev_cache_dir.Rd | 2 man/bunddev_call.Rd | 3 man/bunddev_call_tidy.Rd | 3 man/bunddev_endpoints.Rd | 2 man/bunddev_parameter_values.Rd | 2 man/bunddev_parameters.Rd | 2 man/bunddev_parameters_for.Rd | 2 man/bunddev_spec.Rd | 2 man/bunddev_spec_path.Rd | 2 tests/testthat/test-handelsregister.R | 5 tests/testthat/test-travelwarning.R | 5 18 files changed, 265 insertions(+), 116 deletions(-)
Title: Diagnostics for OMOP Common Data Model Drug Records
Description: Ingredient specific diagnostics for drug exposure records in the Observational Medical Outcomes Partnership (OMOP) common data model.
Author: Ger Inberg [aut, cre] ,
Edward Burn [aut] ,
Theresa Burkard [aut] ,
Yuchen Guo [ctb] ,
Marti Catala [ctb] ,
Mike Du [ctb] ,
Xintong Li [ctb] ,
Ross Williams [ctb] ,
Erasmus MC [cph]
Maintainer: Ger Inberg <g.inberg@erasmusmc.nl>
Diff between DrugExposureDiagnostics versions 1.1.5 dated 2025-09-16 and 1.1.6 dated 2026-02-16
DESCRIPTION | 10 +-- MD5 | 42 ++++++++-------- NEWS.md | 4 + R/ingredientDescendantsInDb.R | 2 R/obscureCounts.R | 2 R/runBenchmark.R | 52 +++++++++++++++++--- R/summariseChecks.R | 18 +++--- build/vignette.rds |binary inst/doc/DaysSupply.html | 5 + inst/doc/DiagnosticsSummary.html | 5 + inst/doc/DrugDose.html | 7 +- inst/doc/DrugDuration.html | 5 + inst/doc/DrugSig.html | 7 +- inst/doc/DrugSourceConcepts.html | 5 + inst/doc/DrugTypes.html | 5 + inst/doc/IntroductionToDrugExposureDiagnostics.html | 14 ++--- inst/doc/Missingness.html | 5 + inst/doc/Quantity.html | 5 + inst/doc/Routes.html | 5 + inst/doc/VerbatimEndDate.html | 5 + man/mem_change.Rd |only man/mem_used.Rd |only tests/testthat/test-SyntheaSqlServer.R | 2 23 files changed, 131 insertions(+), 74 deletions(-)
More information about DrugExposureDiagnostics at CRAN
Permanent link
Title: Connect to an OMOP Common Data Model
Description: Provides tools for working with observational health data in the
Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax.
Common data model database table references are stored in a single compound object along with metadata.
Author: Adam Black [aut, cre] ,
Artem Gorbachev [aut],
Edward Burn [aut],
Marti Catala Sabate [aut],
Ioanna Nika [aut]
Maintainer: Adam Black <ablack3@gmail.com>
Diff between CDMConnector versions 2.3.0 dated 2026-01-10 and 2.4.0 dated 2026-02-16
CDMConnector-2.3.0/CDMConnector/tests/testthat/old_tests |only CDMConnector-2.4.0/CDMConnector/DESCRIPTION | 12 CDMConnector-2.4.0/CDMConnector/MD5 | 78 +- CDMConnector-2.4.0/CDMConnector/NAMESPACE | 3 CDMConnector-2.4.0/CDMConnector/NEWS.md | 8 CDMConnector-2.4.0/CDMConnector/R/CDMConnector-package.R | 1 CDMConnector-2.4.0/CDMConnector/R/cdm.R | 20 CDMConnector-2.4.0/CDMConnector/R/cdmFromCohortSet.R |only CDMConnector-2.4.0/CDMConnector/R/compute.R | 41 - CDMConnector-2.4.0/CDMConnector/R/copyCdmTo.R | 26 CDMConnector-2.4.0/CDMConnector/R/dbSource.R | 107 ++- CDMConnector-2.4.0/CDMConnector/R/generateCohortSet.R | 241 +++++--- CDMConnector-2.4.0/CDMConnector/R/utils.R | 298 +++++++++- CDMConnector-2.4.0/CDMConnector/inst/doc/a01_getting-started.html | 66 +- CDMConnector-2.4.0/CDMConnector/inst/doc/a02_cohorts.R | 294 ++++----- CDMConnector-2.4.0/CDMConnector/inst/doc/a02_cohorts.html | 249 +++++++- CDMConnector-2.4.0/CDMConnector/inst/doc/a04_DBI_connection_examples.Rmd | 2 CDMConnector-2.4.0/CDMConnector/inst/doc/a04_DBI_connection_examples.html | 4 CDMConnector-2.4.0/CDMConnector/inst/doc/a06_using_cdm_attributes.html | 4 CDMConnector-2.4.0/CDMConnector/man/CDMConnector-package.Rd | 2 CDMConnector-2.4.0/CDMConnector/man/cdmCommentContents.Rd |only CDMConnector-2.4.0/CDMConnector/man/cdmDisconnect.db_cdm.Rd | 6 CDMConnector-2.4.0/CDMConnector/man/cdmFromCohortSet.Rd |only CDMConnector-2.4.0/CDMConnector/man/dbSource.Rd | 4 CDMConnector-2.4.0/CDMConnector/man/generateCohortSetLocal.Rd |only CDMConnector-2.4.0/CDMConnector/man/inSchema.Rd | 6 CDMConnector-2.4.0/CDMConnector/man/readCohortSet.Rd | 7 CDMConnector-2.4.0/CDMConnector/tests/testthat/setup.R | 4 CDMConnector-2.4.0/CDMConnector/tests/testthat/test-02-db-cdm.R | 8 CDMConnector-2.4.0/CDMConnector/tests/testthat/test-06-db-compute.R | 4 CDMConnector-2.4.0/CDMConnector/tests/testthat/test-07-db-dateadd.R | 2 CDMConnector-2.4.0/CDMConnector/tests/testthat/test-09-db-copy_cdm_to.R | 5 CDMConnector-2.4.0/CDMConnector/tests/testthat/test-16-db-dbSource.R | 15 CDMConnector-2.4.0/CDMConnector/tests/testthat/test-cdmDisconnect.R |only CDMConnector-2.4.0/CDMConnector/tests/testthat/test-cdmFromCohortSet.R |only CDMConnector-2.4.0/CDMConnector/tests/testthat/test-db-utils.R | 6 CDMConnector-2.4.0/CDMConnector/tests/testthat/test-duckdb-multiple-catalogs.R |only CDMConnector-2.4.0/CDMConnector/tests/testthat/test-local-generateCohortSet.R |only CDMConnector-2.4.0/CDMConnector/tests/testthat/test-readCohortSet.R | 10 CDMConnector-2.4.0/CDMConnector/tests/testthat/test-utils.R |only CDMConnector-2.4.0/CDMConnector/vignettes/a04_DBI_connection_examples.Rmd | 2 41 files changed, 1093 insertions(+), 442 deletions(-)
Title: Universal Graphics Device
Description: A unified R graphics backend. Render R graphics fast and easy to many common file formats.
Provides a thread safe 'C' interface for asynchronous rendering of R graphics.
Author: Florian Rupprecht [aut, cre] ,
Kun Ren [ctb],
Tatsuya Shima [ctb],
Jeroen Ooms [ctb] ,
Hadley Wickham [cph] ,
Lionel Henry [cph] ,
Thomas Lin Pedersen [cph] ,
T Jake Luciani [cph] ,
Matthieu Decorde [cph] ,
Vaudor Lise [cph] ,
Tony Plate [cph] ,
Davi [...truncated...]
Maintainer: Florian Rupprecht <floruppr@gmail.com>
This is a re-admission after prior archival of version 0.1.3 dated 2025-02-19
Diff between unigd versions 0.1.3 dated 2025-02-19 and 0.2.0 dated 2026-02-16
unigd-0.1.3/unigd/build/compile_commands.json |only unigd-0.1.3/unigd/src/Makevars.ucrt |only unigd-0.1.3/unigd/tools |only unigd-0.2.0/unigd/DESCRIPTION | 20 unigd-0.2.0/unigd/MD5 | 225 unigd-0.2.0/unigd/NAMESPACE | 46 unigd-0.2.0/unigd/NEWS.md | 8 unigd-0.2.0/unigd/R/fonts.R | 242 unigd-0.2.0/unigd/R/testgraphic.R | 537 + unigd-0.2.0/unigd/R/unigd-package.R | 36 unigd-0.2.0/unigd/R/unigd.R | 1052 +-- unigd-0.2.0/unigd/R/utils.R | 178 unigd-0.2.0/unigd/README.md | 116 unigd-0.2.0/unigd/build/vignette.rds |binary unigd-0.2.0/unigd/cleanup | 2 unigd-0.2.0/unigd/configure | 313 - unigd-0.2.0/unigd/inst/doc/a00_installation.Rmd | 210 unigd-0.2.0/unigd/inst/doc/a00_installation.html | 860 +-- unigd-0.2.0/unigd/inst/doc/b00_guide.R | 41 unigd-0.2.0/unigd/inst/doc/b00_guide.Rmd | 542 - unigd-0.2.0/unigd/inst/doc/b00_guide.html | 1197 ++-- unigd-0.2.0/unigd/inst/doc/c00_c_api.Rmd |only unigd-0.2.0/unigd/inst/doc/c00_c_api.html |only unigd-0.2.0/unigd/inst/doc/d00_benchmark.R |only 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Title: Vectorised Computation of P-Values and Their Supports for
Several Discrete Statistical Tests
Description: Provides vectorised functions for computing p-values of various
common discrete statistical tests, as described e.g. in Agresti (2002)
<doi:10.1002/0471249688>, including their distributions. Exact and
approximate computation methods are provided. For exact ones, several
procedures of determining two-sided p-values are included, which are
outlined in more detail in Hirji (2006) <doi:10.1201/9781420036190>.
Author: Florian Junge [cre, aut] ,
Christina Kihn [aut],
Sebastian Doehler [ctb] ,
Guillermo Durand [ctb]
Maintainer: Florian Junge <diso.fbmn@h-da.de>
Diff between DiscreteTests versions 0.2.1 dated 2024-10-27 and 0.3.0 dated 2026-02-16
DESCRIPTION | 28 - MD5 | 50 +- NAMESPACE | 29 + NEWS.md | 20 + R/DiscreteTests-package.R | 3 R/RcppExports.R |only R/binom.R | 146 +++---- R/class-results.R | 727 ++++++++++++++++++++++++++----------- R/class-summary.R | 90 +++- R/fisher.R | 187 +++++---- R/homogeneity.R |only R/internal.R | 123 ++++-- R/mann-whitney.R |only R/mcnemar.R | 114 ++--- R/poisson.R | 127 +++--- R/wilcoxon.R |only build/partial.rdb |binary man/DiscreteTestResults.Rd | 150 ++++--- man/DiscreteTestResultsSummary.Rd | 8 man/DiscreteTests-package.Rd | 3 man/binom_test_pv.Rd | 39 + man/fisher_test_pv.Rd | 43 +- man/homogeneity_test_pv.Rd |only man/mann_whitney_test_pv.Rd |only man/mcnemar_test_pv.Rd | 41 +- man/poisson_test_pv.Rd | 39 + man/summary.DiscreteTestResults.Rd | 4 man/wilcox_test_pv.Rd |only src |only 29 files changed, 1261 insertions(+), 710 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-01-31 1.0.0
Title: Evaluation of Tweedie Exponential Family Models
Description: Maximum likelihood computations for Tweedie families, including the series expansion (Dunn and Smyth, 2005; <doi:10.1007/s11222-005-4070-y>) and the Fourier inversion (Dunn and Smyth, 2008; <doi:10.1007/s11222-007-9039-6>), and related methods.
Author: Peter K. Dunn [cre, aut]
Maintainer: Peter K. Dunn <pdunn2@usc.edu.au>
Diff between tweedie versions 3.0.12 dated 2026-02-07 and 3.0.14 dated 2026-02-16
tweedie-3.0.12/tweedie/src/Makevars-Working.makefile |only tweedie-3.0.12/tweedie/src/Makevars-WorksOnLinux.makefile |only tweedie-3.0.12/tweedie/src/Makevars-workingOnMac.makefile |only tweedie-3.0.12/tweedie/src/TweedieIntZones.f90 |only tweedie-3.0.12/tweedie/src/twcomputation_main.f90 |only tweedie-3.0.12/tweedie/tests/testthat/tests-valgrind.RHIDE |only tweedie-3.0.14/tweedie/DESCRIPTION | 8 tweedie-3.0.14/tweedie/MD5 | 473 +++++++++++-- tweedie-3.0.14/tweedie/NEWS.md | 19 tweedie-3.0.14/tweedie/R/dtweedie_inversion.R | 14 tweedie-3.0.14/tweedie/R/ptweedie_inversion.R | 7 tweedie-3.0.14/tweedie/R/tweedie-internals.R | 11 tweedie-3.0.14/tweedie/R/tweedie_profile.R | 35 tweedie-3.0.14/tweedie/R/utils.R | 4 tweedie-3.0.14/tweedie/README.md | 2 tweedie-3.0.14/tweedie/build/partial.rdb |binary tweedie-3.0.14/tweedie/build/vignette.rds |binary tweedie-3.0.14/tweedie/inst/CITATION | 6 tweedie-3.0.14/tweedie/inst/doc/tweedie.R | 78 +- tweedie-3.0.14/tweedie/inst/doc/tweedie.Rmd | 145 +++ tweedie-3.0.14/tweedie/inst/doc/tweedie.html | 381 +++++++--- tweedie-3.0.14/tweedie/inst/extdata |only tweedie-3.0.14/tweedie/man/dtweedie_inversion.Rd | 2 tweedie-3.0.14/tweedie/man/ptweedie_inversion.Rd | 2 tweedie-3.0.14/tweedie/man/tweedie_profile.Rd | 7 tweedie-3.0.14/tweedie/src/00tweedie_params.f90 | 2 tweedie-3.0.14/tweedie/src/Calcs_Imag.f90 | 128 ++- tweedie-3.0.14/tweedie/src/Calcs_K.f90 | 420 +++++++---- tweedie-3.0.14/tweedie/src/Calcs_Real.f90 | 57 - tweedie-3.0.14/tweedie/src/Calcs_Solvers.f90 | 170 +--- tweedie-3.0.14/tweedie/src/Doxyfile |only tweedie-3.0.14/tweedie/src/Integrands.f90 | 21 tweedie-3.0.14/tweedie/src/Makevars.in | 15 tweedie-3.0.14/tweedie/src/Makevars.win | 11 tweedie-3.0.14/tweedie/src/TweedieIntHelpers.f90 |only tweedie-3.0.14/tweedie/src/TweedieIntegration.f90 | 102 +- tweedie-3.0.14/tweedie/src/accelerate.f90 | 3 tweedie-3.0.14/tweedie/src/deps.out |only tweedie-3.0.14/tweedie/src/docs |only tweedie-3.0.14/tweedie/src/findAccelStart.f90 | 12 tweedie-3.0.14/tweedie/src/twcomputation.f90 | 2 tweedie-3.0.14/tweedie/src/twcomputation_loop.f90 |only tweedie-3.0.14/tweedie/tests/testthat/Rplots.pdf |binary tweedie-3.0.14/tweedie/tests/testthat/test-other.R | 8 tweedie-3.0.14/tweedie/vignettes/references.bib |only tweedie-3.0.14/tweedie/vignettes/tweedie.Rmd | 145 +++ 46 files changed, 1577 insertions(+), 713 deletions(-)
Title: Visualizations of Paired Comparisons
Description: Convert a logical vector or a vector of p-values or a correlation,
difference, or distance matrix into a display identifying the pairs for
which the differences were not significantly different. Designed for use
in conjunction with the output of functions like TukeyHSD, dist (stats),
simint, simtest, csimint, csimtest (multcomp), friedmanmc, kruskalmc (pgirmess).
Author: Spencer Graves [aut],
Hans-Peter Piepho [aut],
Luciano Selzer [aut, cre],
Sundar Dorai-Raj [ctb]
Maintainer: Luciano Selzer <luciano.selzer@gmail.com>
Diff between multcompView versions 0.1-10 dated 2024-03-07 and 0.1-11 dated 2026-02-16
multcompView-0.1-10/multcompView/man/multcompView-package.Rd |only multcompView-0.1-11/multcompView/DESCRIPTION | 37 +++-- multcompView-0.1-11/multcompView/MD5 | 10 - multcompView-0.1-11/multcompView/R/multcompTs.R | 2 multcompView-0.1-11/multcompView/R/multcompView-package.R | 70 +++++------ multcompView-0.1-11/multcompView/inst |only multcompView-0.1-11/multcompView/man/multcompTs.Rd | 2 7 files changed, 61 insertions(+), 60 deletions(-)
Title: Core Tools for Packages in the 'fable' Framework
Description: Provides tools, helpers and data structures for
developing models and time series functions for 'fable' and extension
packages. These tools support a consistent and tidy interface for time
series modelling and analysis.
Author: Mitchell O'Hara-Wild [aut, cre] ,
Rob Hyndman [aut],
Earo Wang [aut] ,
Di Cook [ctb],
George Athanasopoulos [ctb],
David Holt [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between fabletools versions 0.6.0 dated 2026-02-09 and 0.6.1 dated 2026-02-16
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 8 ++++++++ R/zzz.R | 24 ++++++++++++------------ build/stage23.rdb |binary 5 files changed, 27 insertions(+), 19 deletions(-)