Title: Make 'ggplot2' Graphics Interactive
Description: Create interactive 'ggplot2' graphics using 'htmlwidgets'.
Author: David Gohel [aut, cre],
Panagiotis Skintzos [aut],
Mike Bostock [cph] ,
Speros Kokenes [cph] ,
Eric Shull [cph] ,
Lee Thomason [cph] ,
Vladimir Agafonkin [cph] ,
Eric Book [ctb]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between ggiraph versions 0.9.5 dated 2026-02-17 and 0.9.6 dated 2026-02-21
ggiraph-0.9.5/ggiraph/inst/tinytest/test-fonts.R |only ggiraph-0.9.5/ggiraph/inst/tinytest/test-zz-dom.R |only ggiraph-0.9.6/ggiraph/DESCRIPTION | 10 ggiraph-0.9.6/ggiraph/MD5 | 182 ++++------ ggiraph-0.9.6/ggiraph/NAMESPACE | 1 ggiraph-0.9.6/ggiraph/NEWS.md | 6 ggiraph-0.9.6/ggiraph/R/geom_density_2d_interactive.R | 51 ++ ggiraph-0.9.6/ggiraph/R/guide_bins_interactive.R | 109 +++++ ggiraph-0.9.6/ggiraph/R/guide_coloursteps_interactive.R | 49 ++ ggiraph-0.9.6/ggiraph/R/utils.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-annotate_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-annotation_raster_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-dsvg.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-dsvg_clip_mask_pattern.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-dsvg_lines.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-dsvg_points.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-dsvg_raster.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-dsvg_text.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_abline_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_bar_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_bin_2d_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_boxplot_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_col_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_contour_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_count_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_crossbar_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_curve_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_density_2d_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_density_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_dotplot_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_errorbar_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_errorbarh_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_freqpoly_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_hex_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_histogram_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_hline_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_jitter_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_label_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_linerange_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_map_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_path_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_point_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_pointrange_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_polygon_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_quantile_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_raster_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_rect_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_ribbon_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_segment_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_sf_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_smooth_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_spoke_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_text_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_text_repel_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_tile_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_violin_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-geom_vline_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-girafe.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-guide_bins_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-guide_legend_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-interactive_circle_grob.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-interactive_curve_grob.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-interactive_path_grob.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-interactive_points_grob.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-interactive_polygon_grob.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-interactive_polyline_grob.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-interactive_raster_grob.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-interactive_rect_grob.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-interactive_roundrect_grob.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-interactive_segments_grob.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-interactive_text_grob.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-labeller_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-scale_alpha_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-scale_brewer_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-scale_colour_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-scale_gradient_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-scale_linetype_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-scale_manual_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-scale_shape_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-scale_size_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-scale_steps_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-scale_viridis_interactive.R | 1 ggiraph-0.9.6/ggiraph/inst/tinytest/test-tracers.R | 1 ggiraph-0.9.6/ggiraph/man/annotate_interactive.Rd | 4 ggiraph-0.9.6/ggiraph/man/geom_abline_interactive.Rd | 2 ggiraph-0.9.6/ggiraph/man/geom_density_2d_interactive.Rd | 18 ggiraph-0.9.6/ggiraph/man/geom_quasirandom_interactive.Rd | 7 ggiraph-0.9.6/ggiraph/man/guide_bins_interactive.Rd | 3 ggiraph-0.9.6/ggiraph/man/guide_coloursteps_interactive.Rd | 10 ggiraph-0.9.6/ggiraph/man/guide_legend_interactive.Rd | 2 ggiraph-0.9.6/ggiraph/man/scale_viridis_interactive.Rd | 2 ggiraph-0.9.6/ggiraph/tests/tinytest.R | 2 ggiraph-0.9.6/ggiraph/tools/tests/test_stubs.R | 1 93 files changed, 329 insertions(+), 204 deletions(-)
Title: Detection of Univariate Outliers
Description: Provides well-known techniques for detecting univariate
outliers. Methods for handling skewed distributions are included.
The Hidiroglou-Berthelot (1986) method for detecting outliers in
ratios of historical data is also implemented. When available,
survey weights can be incorporated in the detection process.
Author: Marcello D'Orazio [aut, cre]
Maintainer: Marcello D'Orazio <mdo.statmatch@gmail.com>
Diff between univOutl versions 0.4 dated 2022-05-31 and 0.5.0 dated 2026-02-21
univOutl-0.4/univOutl/NEWS |only univOutl-0.5.0/univOutl/DESCRIPTION | 23 +++++++++++++++++------ univOutl-0.5.0/univOutl/MD5 | 8 ++++---- univOutl-0.5.0/univOutl/NEWS.md |only univOutl-0.5.0/univOutl/R/boxB.R | 25 ++++++++++++++++++++++++- univOutl-0.5.0/univOutl/man/boxB.Rd | 23 ++++++++++++++++++----- 6 files changed, 63 insertions(+), 16 deletions(-)
Title: Data Exchange Between R and 'LabKey' Server
Description: The 'LabKey' client library for R makes it easy for R users to
load live data from a 'LabKey' Server, <https://www.labkey.com/>,
into the R environment for analysis, provided users have permissions
to read the data. It also enables R users to insert, update, and
delete records stored on a 'LabKey' Server, provided they have appropriate
permissions to do so.
Author: Peter Hussey [aut],
Cory Nathe [cre]
Maintainer: Cory Nathe <cnathe@labkey.com>
Diff between Rlabkey versions 3.4.5 dated 2026-01-29 and 3.4.6 dated 2026-02-21
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 4 ++++ R/makeFilter.R | 10 ++++++++++ man/Rlabkey-package.Rd | 4 ++-- man/makeFilter.Rd | 9 ++++++++- src/listToMatrix.cpp | 24 ++++++++++++++++++++++-- 7 files changed, 56 insertions(+), 15 deletions(-)
Title: Partial Least Squares and Principal Component Regression
Description: Multivariate regression methods
Partial Least Squares Regression (PLSR), Principal Component
Regression (PCR) and Canonical Powered Partial Least Squares (CPPLS).
Author: Kristian Hovde Liland [aut, cre],
Bjoern-Helge Mevik [aut],
Ron Wehrens [aut],
Paul Hiemstra [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between pls versions 2.8-5 dated 2024-09-15 and 2.9-0 dated 2026-02-21
pls-2.8-5/pls/inst/doc/pls-manual.Rnw |only pls-2.8-5/pls/inst/doc/pls-manual.pdf |only pls-2.8-5/pls/vignettes/pls-manual.Rnw |only pls-2.9-0/pls/DESCRIPTION | 16 pls-2.9-0/pls/MD5 | 76 ++- pls-2.9-0/pls/NAMESPACE | 4 pls-2.9-0/pls/R/cppls.fit.R | 12 pls-2.9-0/pls/R/crossval.R | 28 + pls-2.9-0/pls/R/cvsegments.R | 11 pls-2.9-0/pls/R/extract.R | 373 ++++++++++++------- pls-2.9-0/pls/R/fac2seg.R | 1 pls-2.9-0/pls/R/mvr.R | 276 +++++++------- pls-2.9-0/pls/R/mvrVal.R | 8 pls-2.9-0/pls/R/mvr_wrappers.R | 48 +- pls-2.9-0/pls/R/nipals.fit.R |only pls-2.9-0/pls/R/plots.R | 35 + pls-2.9-0/pls/R/simpls.fit.R | 48 ++ pls-2.9-0/pls/R/summaries.R | 19 pls-2.9-0/pls/R/svdpc.fit.R | 196 +++++++++ pls-2.9-0/pls/build/vignette.rds |binary pls-2.9-0/pls/inst/NEWS.Rd | 14 pls-2.9-0/pls/inst/doc/pls-manual.R | 240 +++--------- pls-2.9-0/pls/inst/doc/pls-manual.Rmd |only pls-2.9-0/pls/inst/doc/pls-manual.html |only pls-2.9-0/pls/man/cvsegments.Rd | 13 pls-2.9-0/pls/man/fac2seg.Rd | 3 pls-2.9-0/pls/man/mvr.Rd | 9 pls-2.9-0/pls/man/nipals.fit.Rd |only pls-2.9-0/pls/man/nipalspc.fit.Rd |only pls-2.9-0/pls/man/pls.Rd | 1 pls-2.9-0/pls/man/scoreplot.Rd | 17 pls-2.9-0/pls/man/scores.Rd | 8 pls-2.9-0/pls/man/simpls.fit.Rd | 55 ++ pls-2.9-0/pls/tests/RUnit/common/runit.algorithms.R | 14 pls-2.9-0/pls/tests/pred.cppls.rds |only pls-2.9-0/pls/tests/pred.pcr.rds |only pls-2.9-0/pls/tests/pred.pls.rds |only pls-2.9-0/pls/tests/pred.pls.widekernel.rds |only pls-2.9-0/pls/tests/pred_nocenter.cppls.rds |only pls-2.9-0/pls/tests/pred_nocenter.oscorepls.rds |only pls-2.9-0/pls/tests/pred_nocenter.pcr.rds |only pls-2.9-0/pls/tests/pred_nocenter.pls.rds |only pls-2.9-0/pls/tests/pred_nocenter.pls.widekernel.rds |only pls-2.9-0/pls/tests/testthat/pred.cppls.rds |binary pls-2.9-0/pls/tests/testthat/test_basic_pls.R | 6 pls-2.9-0/pls/vignettes/pls-manual.Rmd |only pls-2.9-0/pls/vignettes/pls-manual.Rnw.old |only pls-2.9-0/pls/vignettes/pls-manual.bib | 22 + pls-2.9-0/pls/vignettes/pls-manual.tex |only 49 files changed, 1038 insertions(+), 515 deletions(-)
Title: Read, Write and Edit 'xlsx' Files
Description: Simplifies the creation of 'xlsx' files by
providing a high level interface to writing, styling and editing
worksheets.
Author: Jordan Mark Barbone [aut] ,
Jan Marvin Garbuszus [aut, cre],
Olivier Roy [ctb],
openxlsx authors [cph] ,
Arseny Kapoulkine [ctb, cph]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>
Diff between openxlsx2 versions 1.23.1 dated 2026-01-19 and 1.24 dated 2026-02-21
openxlsx2-1.23.1/openxlsx2/tests/testthat/test-protect-workbook.R |only openxlsx2-1.23.1/openxlsx2/tests/testthat/test-protect-worksheet.R |only openxlsx2-1.24/openxlsx2/DESCRIPTION | 10 openxlsx2-1.24/openxlsx2/MD5 | 207 - openxlsx2-1.24/openxlsx2/NEWS.md | 25 openxlsx2-1.24/openxlsx2/R/RcppExports.R | 9 openxlsx2-1.24/openxlsx2/R/baseXML.R | 2 openxlsx2-1.24/openxlsx2/R/class-color.R | 81 openxlsx2-1.24/openxlsx2/R/class-comment.R | 20 openxlsx2-1.24/openxlsx2/R/class-style_mgr.R | 8 openxlsx2-1.24/openxlsx2/R/class-workbook-wrappers.R | 1133 +++++++--- openxlsx2-1.24/openxlsx2/R/class-workbook.R | 486 +++- openxlsx2-1.24/openxlsx2/R/class-worksheet.R | 9 openxlsx2-1.24/openxlsx2/R/converters.R | 98 openxlsx2-1.24/openxlsx2/R/get-named-regions.R | 3 openxlsx2-1.24/openxlsx2/R/helper-functions.R | 205 + openxlsx2-1.24/openxlsx2/R/pugixml.R | 9 openxlsx2-1.24/openxlsx2/R/read.R | 388 +-- openxlsx2-1.24/openxlsx2/R/utils.R | 33 openxlsx2-1.24/openxlsx2/R/wb_functions.R | 16 openxlsx2-1.24/openxlsx2/R/wb_load.R | 706 +++--- openxlsx2-1.24/openxlsx2/R/wb_styles.R | 46 openxlsx2-1.24/openxlsx2/R/write.R | 41 openxlsx2-1.24/openxlsx2/R/xl_open.R | 52 openxlsx2-1.24/openxlsx2/README.md | 2 openxlsx2-1.24/openxlsx2/build/vignette.rds |binary openxlsx2-1.24/openxlsx2/inst/AUTHORS | 2 openxlsx2-1.24/openxlsx2/inst/WORDLIST | 51 openxlsx2-1.24/openxlsx2/inst/doc/conditional-formatting.html | 104 openxlsx2-1.24/openxlsx2/inst/doc/openxlsx2.Rmd | 2 openxlsx2-1.24/openxlsx2/inst/doc/openxlsx2.html | 4 openxlsx2-1.24/openxlsx2/inst/doc/openxlsx2_charts_manual.html | 10 openxlsx2-1.24/openxlsx2/inst/doc/openxlsx2_read_to_df.Rmd | 6 openxlsx2-1.24/openxlsx2/inst/doc/openxlsx2_read_to_df.html | 14 openxlsx2-1.24/openxlsx2/inst/doc/openxlsx2_style_manual.R | 2 openxlsx2-1.24/openxlsx2/inst/doc/openxlsx2_style_manual.Rmd | 16 openxlsx2-1.24/openxlsx2/inst/doc/openxlsx2_style_manual.html | 37 openxlsx2-1.24/openxlsx2/man/col2int.Rd | 55 openxlsx2-1.24/openxlsx2/man/create_sparklines.Rd | 101 openxlsx2-1.24/openxlsx2/man/int2col.Rd | 46 openxlsx2-1.24/openxlsx2/man/wbWorkbook.Rd | 4 openxlsx2-1.24/openxlsx2/man/wb_add_border.Rd | 67 openxlsx2-1.24/openxlsx2/man/wb_add_cell_style.Rd | 99 openxlsx2-1.24/openxlsx2/man/wb_add_chartsheet.Rd | 39 openxlsx2-1.24/openxlsx2/man/wb_add_dxfs_style.Rd | 50 openxlsx2-1.24/openxlsx2/man/wb_add_fill.Rd | 57 openxlsx2-1.24/openxlsx2/man/wb_add_font.Rd | 88 openxlsx2-1.24/openxlsx2/man/wb_add_ignore_error.Rd | 64 openxlsx2-1.24/openxlsx2/man/wb_add_image.Rd | 54 openxlsx2-1.24/openxlsx2/man/wb_add_mschart.Rd | 55 openxlsx2-1.24/openxlsx2/man/wb_add_page_break.Rd | 41 openxlsx2-1.24/openxlsx2/man/wb_add_pivot_table.Rd | 2 openxlsx2-1.24/openxlsx2/man/wb_add_plot.Rd | 54 openxlsx2-1.24/openxlsx2/man/wb_add_sparklines.Rd | 11 openxlsx2-1.24/openxlsx2/man/wb_add_style.Rd | 41 openxlsx2-1.24/openxlsx2/man/wb_add_worksheet.Rd | 102 openxlsx2-1.24/openxlsx2/man/wb_cell_style.Rd | 48 openxlsx2-1.24/openxlsx2/man/wb_clean_sheet.Rd | 57 openxlsx2-1.24/openxlsx2/man/wb_color.Rd | 78 openxlsx2-1.24/openxlsx2/man/wb_freeze_pane.Rd | 58 openxlsx2-1.24/openxlsx2/man/wb_load.Rd | 3 openxlsx2-1.24/openxlsx2/man/wb_open.Rd | 34 openxlsx2-1.24/openxlsx2/man/wb_protect.Rd | 21 openxlsx2-1.24/openxlsx2/man/wb_protect_worksheet.Rd | 24 openxlsx2-1.24/openxlsx2/man/wb_set_sheetview.Rd | 73 openxlsx2-1.24/openxlsx2/man/wb_to_df.Rd | 193 - openxlsx2-1.24/openxlsx2/man/write_xlsx.Rd | 24 openxlsx2-1.24/openxlsx2/man/xl_open.Rd | 51 openxlsx2-1.24/openxlsx2/man/xml_attr_mod.Rd | 3 openxlsx2-1.24/openxlsx2/src/RcppExports.cpp | 22 openxlsx2-1.24/openxlsx2/src/date.cpp | 1 openxlsx2-1.24/openxlsx2/src/helper_functions.cpp | 161 - openxlsx2-1.24/openxlsx2/src/load_workbook.cpp | 11 openxlsx2-1.24/openxlsx2/src/openxlsx2.h | 56 openxlsx2-1.24/openxlsx2/src/openxlsx2_types.h | 9 openxlsx2-1.24/openxlsx2/src/pugi.cpp | 288 -- openxlsx2-1.24/openxlsx2/src/strings_xml.cpp | 150 - openxlsx2-1.24/openxlsx2/src/styles_xml.cpp | 134 - openxlsx2-1.24/openxlsx2/src/write_file.cpp | 245 +- openxlsx2-1.24/openxlsx2/src/xlsb.cpp | 178 - openxlsx2-1.24/openxlsx2/src/xlsb_funs.h | 62 openxlsx2-1.24/openxlsx2/tests/testthat/helper.R | 1068 --------- openxlsx2-1.24/openxlsx2/tests/testthat/test-base_font.R | 6 openxlsx2-1.24/openxlsx2/tests/testthat/test-class-comment.R | 45 openxlsx2-1.24/openxlsx2/tests/testthat/test-class-workbook-wrappers.R | 8 openxlsx2-1.24/openxlsx2/tests/testthat/test-class-workbook.R | 149 - openxlsx2-1.24/openxlsx2/tests/testthat/test-conditional_formatting.R | 6 openxlsx2-1.24/openxlsx2/tests/testthat/test-formulas.R | 6 openxlsx2-1.24/openxlsx2/tests/testthat/test-helper-functions.R | 67 openxlsx2-1.24/openxlsx2/tests/testthat/test-loading_workbook.R | 36 openxlsx2-1.24/openxlsx2/tests/testthat/test-named_regions.R | 11 openxlsx2-1.24/openxlsx2/tests/testthat/test-protect.R |only openxlsx2-1.24/openxlsx2/tests/testthat/test-pugi_cpp.R | 5 openxlsx2-1.24/openxlsx2/tests/testthat/test-pugixml.R | 16 openxlsx2-1.24/openxlsx2/tests/testthat/test-read_sources.R | 103 openxlsx2-1.24/openxlsx2/tests/testthat/test-read_xlsb.R | 53 openxlsx2-1.24/openxlsx2/tests/testthat/test-save.R | 16 openxlsx2-1.24/openxlsx2/tests/testthat/test-strings_xml.R | 9 openxlsx2-1.24/openxlsx2/tests/testthat/test-styles_xml.R | 84 openxlsx2-1.24/openxlsx2/tests/testthat/test-utils.R | 11 openxlsx2-1.24/openxlsx2/tests/testthat/test-wb_functions.R | 13 openxlsx2-1.24/openxlsx2/tests/testthat/test-wb_styles.R | 150 - openxlsx2-1.24/openxlsx2/tests/testthat/test-write.R | 18 openxlsx2-1.24/openxlsx2/vignettes/openxlsx2.Rmd | 2 openxlsx2-1.24/openxlsx2/vignettes/openxlsx2_read_to_df.Rmd | 6 openxlsx2-1.24/openxlsx2/vignettes/openxlsx2_style_manual.Rmd | 16 106 files changed, 5114 insertions(+), 3641 deletions(-)
Title: Measles Epidemiological Models
Description: A specialized collection of measles epidemiological models built on the 'epiworldR' framework. This package is a spinoff from 'epiworldR' focusing specifically on measles transmission dynamics. It includes models for school settings with quarantine and isolation policies, mixing models with population groups, and risk-based quarantine strategies. The models use Agent-Based Models (ABM) with a fast 'C++' backend from the 'epiworld' library. Ideal for studying measles outbreaks, vaccination strategies, and intervention policies.
Author: George Vega Yon [aut, cre] ,
Damon Toth [ctb] ,
Jake Wagoner [ctb] ,
Olivia Banks [ctb] ,
Centers for Disease Control and Prevention [fnd]
Maintainer: George Vega Yon <g.vegayon@gmail.com>
Diff between measles versions 0.1.0 dated 2026-02-12 and 0.1.1 dated 2026-02-21
measles-0.1.0/measles/cleanup |only measles-0.1.0/measles/configure |only measles-0.1.0/measles/configure.ac |only measles-0.1.0/measles/src/Makevars.in |only measles-0.1.1/measles/DESCRIPTION | 7 measles-0.1.1/measles/MD5 | 13 - measles-0.1.1/measles/NEWS.md | 14 + measles-0.1.1/measles/inst/doc/short-creek.html | 294 +++++++++++------------- measles-0.1.1/measles/src/Makevars |only measles-0.1.1/measles/src/Makevars.win | 8 10 files changed, 168 insertions(+), 168 deletions(-)
Title: Spatiotemporal Nutrient Balance Analysis Across Agricultural and
Municipal Systems
Description: A comprehensive framework for analyzing agricultural nutrient
balances across multiple spatial scales (county, 'HUC8', 'HUC2') with
integration of wastewater treatment plant ('WWTP') effluent loads for both
nitrogen and phosphorus. Supports classification of spatial units as
nutrient sources, sinks, or balanced areas based on agricultural surplus
and deficit calculations. Includes visualization tools, spatial transition
probability analysis, and nutrient flow network mapping. Built-in datasets
include agricultural nutrient balance data from the Nutrient Use Geographic
Information System ('NuGIS'; The Fertilizer Institute and Plant Nutrition
Canada, 1987-2016) <https://nugis.tfi.org/tabular_data/> and U.S. Environmental
Protection Agency ('EPA') wastewater discharge data from the 'ECHO' Discharge
Monitoring Report ('DMR') Loading Tool (2007-2016)
<https://echo.epa.gov/trends/loading-tool/water-pollution-search>. Data
are downloaded on demand from the Open Science Framework ( [...truncated...]
Author: Olatunde D. Akanbi [aut, cre, cph] ,
Vibha Mandayam [aut] ,
Atharva Gupta [aut] ,
K. Colton Flynn [aut] ,
Jeffrey Yarus [aut] ,
Erika I. Barcelos [aut, cph] ,
Roger H. French [aut, cph]
Maintainer: Olatunde D. Akanbi <olatunde.akanbi@case.edu>
Diff between manureshed versions 0.1.2 dated 2026-01-28 and 0.1.3 dated 2026-02-21
DESCRIPTION | 6 +- MD5 | 22 ++++---- NEWS.md | 4 + R/data_loading.R | 6 +- R/export_functions.R | 84 ++++++++++++++------------------ R/package_documentation.R | 31 +++++++---- inst/doc/advanced-features.html | 4 - inst/doc/custom-efficiency-analyis.html | 4 - inst/doc/data-integration.html | 4 - inst/doc/getting-started.html | 4 - inst/doc/visualization-guide.html | 4 - tests/testthat/test-workflows.R | 1 12 files changed, 91 insertions(+), 83 deletions(-)
Title: Additional Layout Algorithms for Network Visualizations
Description: Several new layout algorithms to visualize networks are provided which are not part of 'igraph'.
Most are based on the concept of stress majorization by Gansner et al. (2004) <doi:10.1007/978-3-540-31843-9_25>.
Some more specific algorithms allow the user to emphasize hidden group structures in networks or focus on specific nodes.
Author: David Schoch [aut, cre]
Maintainer: David Schoch <david@schochastics.net>
Diff between graphlayouts versions 1.2.2 dated 2025-01-23 and 1.2.3 dated 2026-02-21
DESCRIPTION | 9 MD5 | 60 +- NEWS.md | 5 R/annotate_functions.R | 150 +++-- R/graph_manipulate.R | 30 - R/layout_backbone.R | 237 +++++---- R/layout_dynamic.R | 88 ++- R/layout_large_graphs.R | 106 ++-- R/layout_multilevel.R | 381 +++++++-------- R/layout_spectral.R | 58 +- R/layout_stress.R | 755 +++++++++++++++++------------- R/layout_umap.R | 25 R/layouts.R | 324 +++++++++--- R/metro_multicriteria.R | 81 +-- R/utils.R | 303 ++++++------ man/figures/README-example-1.png |binary man/figures/README-example-2.png |binary man/figures/README-example_un-1.png |binary man/figures/README-example_un-2.png |binary man/figures/README-flex_cent-1.png |binary src/stress.cpp | 279 ++++++----- tests/testthat/test-graph_manipulate.R | 8 tests/testthat/test-layout_backbone.R | 24 tests/testthat/test-layout_dynamic.R | 10 tests/testthat/test-layout_large_graphs.R | 36 - tests/testthat/test-layout_manipulate.R | 26 - tests/testthat/test-layout_multilevel.R | 107 ++-- tests/testthat/test-layout_spectral.R | 12 tests/testthat/test-layouts.R | 18 tests/testthat/test-misc.R | 40 + tests/testthat/test-stress_majorization.R | 424 +++++++++------- 31 files changed, 2076 insertions(+), 1520 deletions(-)
Title: Fast Agent-Based Epi Models
Description: A flexible framework for Agent-Based Models (ABM), the 'epiworldR' package provides methods for prototyping disease outbreaks and transmission models using a 'C++' backend, making it very fast. It supports multiple epidemiological models, including the Susceptible-Infected-Susceptible (SIS), Susceptible-Infected-Removed (SIR), Susceptible-Exposed-Infected-Removed (SEIR), and others, involving arbitrary mitigation policies and multiple-disease models. Users can specify infectiousness/susceptibility rates as a function of agents' features, providing great complexity for the model dynamics. Furthermore, 'epiworldR' is ideal for simulation studies featuring large populations.
Author: George Vega Yon [aut, cre] ,
Derek Meyer [aut] ,
Andrew Pulsipher [aut] ,
Susan Holmes [rev] ,
Abinash Satapathy [rev] ,
Carinogurjao [rev],
Centers for Disease Control and Prevention [fnd]
Maintainer: George Vega Yon <g.vegayon@gmail.com>
Diff between epiworldR versions 0.11.2.0 dated 2026-02-03 and 0.12.0.0 dated 2026-02-21
epiworldR-0.11.2.0/epiworldR/cleanup |only epiworldR-0.11.2.0/epiworldR/configure |only epiworldR-0.11.2.0/epiworldR/configure.ac |only epiworldR-0.11.2.0/epiworldR/inst/include/epiworld/entities-bones.hpp |only epiworldR-0.11.2.0/epiworldR/src/Makevars.in |only epiworldR-0.12.0.0/epiworldR/DESCRIPTION | 7 epiworldR-0.12.0.0/epiworldR/MD5 | 58 ++-- epiworldR-0.12.0.0/epiworldR/NEWS.md | 18 + epiworldR-0.12.0.0/epiworldR/R/ModelSEIRMixingQuarantine.R | 20 - epiworldR-0.12.0.0/epiworldR/README.md | 10 epiworldR-0.12.0.0/epiworldR/inst/doc/advanced-modeling.html | 12 epiworldR-0.12.0.0/epiworldR/inst/doc/getting-started.html | 8 epiworldR-0.12.0.0/epiworldR/inst/doc/likelihood-free-mcmc.html | 8 epiworldR-0.12.0.0/epiworldR/inst/doc/mixing.html | 8 epiworldR-0.12.0.0/epiworldR/inst/doc/run-multiple.html | 4 epiworldR-0.12.0.0/epiworldR/inst/include/epiworld/agent-bones.hpp | 13 - epiworldR-0.12.0.0/epiworldR/inst/include/epiworld/agent-events-meat.hpp | 123 ++-------- epiworldR-0.12.0.0/epiworldR/inst/include/epiworld/agent-meat.hpp | 74 ++---- epiworldR-0.12.0.0/epiworldR/inst/include/epiworld/agentssample-bones.hpp | 19 - epiworldR-0.12.0.0/epiworldR/inst/include/epiworld/entity-bones.hpp | 19 - epiworldR-0.12.0.0/epiworldR/inst/include/epiworld/entity-distribute-meat.hpp | 4 epiworldR-0.12.0.0/epiworldR/inst/include/epiworld/entity-meat.hpp | 62 ++--- epiworldR-0.12.0.0/epiworldR/inst/include/epiworld/epiworld.hpp | 6 epiworldR-0.12.0.0/epiworldR/inst/include/epiworld/model-bones.hpp | 1 epiworldR-0.12.0.0/epiworldR/inst/include/epiworld/model-meat.hpp | 43 --- epiworldR-0.12.0.0/epiworldR/inst/include/epiworld/models/measlesmixingriskquarantine.hpp | 4 epiworldR-0.12.0.0/epiworldR/inst/include/epiworld/models/seirmixingquarantine.hpp | 54 +++- epiworldR-0.12.0.0/epiworldR/inst/include/epiworld/tool-distribute-meat.hpp | 2 epiworldR-0.12.0.0/epiworldR/inst/include/epiworld/virus-distribute-meat.hpp | 6 epiworldR-0.12.0.0/epiworldR/man/ModelSEIRMixingQuarantine.Rd | 5 epiworldR-0.12.0.0/epiworldR/src/Makevars |only epiworldR-0.12.0.0/epiworldR/src/Makevars.win | 8 epiworldR-0.12.0.0/epiworldR/src/entities.cpp | 6 33 files changed, 269 insertions(+), 333 deletions(-)
Title: Bayesian Hierarchical Models for Basket Trials
Description: Provides functions for the evaluation of basket
trial designs with binary endpoints. Operating characteristics of a
basket trial design are assessed by simulating trial data according to
scenarios, analyzing the data with Bayesian hierarchical models (BHMs), and
assessing decision probabilities on stratum and trial-level based on Go / No-go decision making.
The package is build for high flexibility regarding decision rules,
number of interim analyses, number of strata, and recruitment.
The BHMs proposed by
Berry et al. (2013) <doi:10.1177/1740774513497539>
and Neuenschwander et al. (2016) <doi:10.1002/pst.1730>,
as well as a model that combines both approaches are implemented.
Functions are provided to implement Bayesian decision rules as for example
proposed by Fisch et al. (2015) <doi:10.1177/2168479014533970>.
In addition, posterior point estimates (mean/median) and credible intervals
for response rates and some model parameters can be calculated.
For simulated tri [...truncated...]
Author: Stephan Wojciekowski [aut, cre],
Tathagata Chattopadhyay [aut]
Maintainer: Stephan Wojciekowski <stephan.wojciekowski@boehringer-ingelheim.com>
Diff between bhmbasket versions 0.9.5 dated 2022-02-14 and 1.0.0 dated 2026-02-21
bhmbasket-0.9.5/bhmbasket/vignettes/bhmbasket_on_HPC.R |only bhmbasket-1.0.0/bhmbasket/DESCRIPTION | 30 bhmbasket-1.0.0/bhmbasket/MD5 | 66 bhmbasket-1.0.0/bhmbasket/NAMESPACE | 54 bhmbasket-1.0.0/bhmbasket/NEWS.md | 252 bhmbasket-1.0.0/bhmbasket/R/AnalysisFunctions.R | 2656 +++++----- bhmbasket-1.0.0/bhmbasket/R/CheckingFunctions.R | 191 bhmbasket-1.0.0/bhmbasket/R/DataFunctions.R | 1666 +++--- bhmbasket-1.0.0/bhmbasket/R/Misc.R | 690 +- bhmbasket-1.0.0/bhmbasket/R/OCFunctions.R | 2378 ++++---- bhmbasket-1.0.0/bhmbasket/R/PlotFunctions.R | 122 bhmbasket-1.0.0/bhmbasket/R/PriorFunctions.R | 1892 +++---- bhmbasket-1.0.0/bhmbasket/README.md |only bhmbasket-1.0.0/bhmbasket/build/vignette.rds |binary bhmbasket-1.0.0/bhmbasket/inst/CITATION | 36 bhmbasket-1.0.0/bhmbasket/inst/WORDLIST | 107 bhmbasket-1.0.0/bhmbasket/inst/doc/Running_bhmbasket_on_HPC.R | 104 bhmbasket-1.0.0/bhmbasket/inst/doc/Running_bhmbasket_on_HPC.Rmd | 158 bhmbasket-1.0.0/bhmbasket/inst/doc/Running_bhmbasket_on_HPC.html | 641 +- bhmbasket-1.0.0/bhmbasket/inst/doc/reproduceExNex.R | 334 - bhmbasket-1.0.0/bhmbasket/inst/doc/reproduceExNex.Rmd | 622 +- bhmbasket-1.0.0/bhmbasket/inst/doc/reproduceExNex.html | 1088 ++-- bhmbasket-1.0.0/bhmbasket/inst/jags_models/berry.txt | 46 bhmbasket-1.0.0/bhmbasket/inst/jags_models/exnex.txt | 108 bhmbasket-1.0.0/bhmbasket/inst/jags_models/exnex_adj.txt | 104 bhmbasket-1.0.0/bhmbasket/man/continueRecruitment.Rd | 5 bhmbasket-1.0.0/bhmbasket/man/createTrial.Rd | 6 bhmbasket-1.0.0/bhmbasket/man/getAverageNSubjects.Rd |only bhmbasket-1.0.0/bhmbasket/man/getEstimates.Rd | 3 bhmbasket-1.0.0/bhmbasket/tests |only bhmbasket-1.0.0/bhmbasket/vignettes/Running_bhmbasket_on_HPC.Rmd | 158 bhmbasket-1.0.0/bhmbasket/vignettes/reproduceExNex.Rmd | 622 +- 32 files changed, 7542 insertions(+), 6597 deletions(-)
Title: A Fast 'WHATWG' Compliant URL Parser
Description: A wrapper for 'ada-url', a 'WHATWG' compliant and fast URL parser written in modern 'C++'. Also contains auxiliary functions such as a public suffix extractor.
Author: David Schoch [aut, cre] ,
Chung-hong Chan [aut] ,
Yagiz Nizipli [ctb, cph] ,
Daniel Lemire [ctb, cph]
Maintainer: David Schoch <david@schochastics.net>
Diff between adaR versions 0.3.4 dated 2025-01-16 and 0.3.5 dated 2026-02-21
DESCRIPTION | 12 MD5 | 18 NEWS.md | 6 README.md | 25 build/vignette.rds |binary inst/doc/adaR.html | 5 src/Makevars | 2 src/ada/ada.cpp | 8027 ++++++++++++++++++++++++++++++++++------------------- src/ada/ada.h | 6855 +++++++++++++++++++++++++++++++++++---------- src/ada/ada_c.h | 10 10 files changed, 10675 insertions(+), 4285 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-06 0.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-07 0.1.0