Title: Create Tests According to QTI 2.1 Standard
Description: Create tests and tasks compliant with the Question & Test Interoperability (QTI) information model version 2.1. Input sources are Rmd/md description files or S4-class objects. Output formats include standalone zip or xml files. Supports the generation of basic task types (single and multiple choice, order, pair association, matching tables, filling gaps and essay) and provides a comprehensive set of attributes for customizing tests.
Author: Andrey Shevandrin [aut, cre, cph] ,
Petr Bondarenko [ctb] ,
Ivonne Ojeda [ctb],
Johannes Titz [aut, cph] ,
Brian Mottershead [cph] ,
Stiftung fuer Innovation in der Hochschullehre [fnd]
Maintainer: Andrey Shevandrin <shevandrin@gmail.com>
Diff between rqti versions 1.0.0 dated 2025-03-05 and 1.1.0 dated 2026-02-23
rqti-1.0.0/rqti/man/qtijs_path.Rd |only rqti-1.1.0/rqti/DESCRIPTION | 20 rqti-1.1.0/rqti/MD5 | 77 rqti-1.1.0/rqti/NAMESPACE | 2 rqti-1.1.0/rqti/NEWS.md | 24 rqti-1.1.0/rqti/R/AssessmentSection.R | 433 +- rqti-1.1.0/rqti/R/AssessmentTest.R | 556 +-- rqti-1.1.0/rqti/R/Entry.R | 374 +- rqti-1.1.0/rqti/R/LMS.R | 935 +++--- rqti-1.1.0/rqti/R/Opal.R | 997 +++--- rqti-1.1.0/rqti/R/extract_results.R | 4 rqti-1.1.0/rqti/R/helpers.R | 52 rqti-1.1.0/rqti/R/knit_functions.R | 355 +- rqti-1.1.0/rqti/README.md | 59 rqti-1.1.0/rqti/inst/QTIJS/index.xml | 444 +- rqti-1.1.0/rqti/inst/exercises/sc1d.xml |only rqti-1.1.0/rqti/inst/rmarkdown/templates/dropdown-complex/skeleton/skeleton.Rmd | 7 rqti-1.1.0/rqti/inst/rmarkdown/templates/dropdown-simple/skeleton/skeleton.Rmd | 3 rqti-1.1.0/rqti/inst/rmarkdown/templates/gap-complex/skeleton/skeleton.Rmd | 22 rqti-1.1.0/rqti/inst/rmarkdown/templates/gap-simple/skeleton/skeleton.Rmd | 4 rqti-1.1.0/rqti/man/create_question_object.Rd | 52 rqti-1.1.0/rqti/man/extract_results.Rd | 4 rqti-1.1.0/rqti/man/getCourseResult-methods.Rd | 98 rqti-1.1.0/rqti/man/getLMSResourcesByName-methods.Rd | 76 rqti-1.1.0/rqti/man/prepare_renderer.Rd | 12 rqti-1.1.0/rqti/man/qtijs_pkg_path.Rd |only rqti-1.1.0/rqti/man/render_opal.Rd | 4 rqti-1.1.0/rqti/man/render_qtijs.Rd | 99 rqti-1.1.0/rqti/man/render_xml.Rd | 49 rqti-1.1.0/rqti/man/render_zip.Rd | 15 rqti-1.1.0/rqti/man/start_server.Rd | 28 rqti-1.1.0/rqti/man/upload2opal.Rd | 120 rqti-1.1.0/rqti/tests/testthat/test-api_lms.R | 99 rqti-1.1.0/rqti/tests/testthat/test-assessment_test.R | 1502 +++++----- rqti-1.1.0/rqti/tests/testthat/test-essay.R | 158 - rqti-1.1.0/rqti/tests/testthat/test-helpers.R | 32 rqti-1.1.0/rqti/tests/testthat/test-knit_functions.R |only rqti-1.1.0/rqti/tests/testthat/test-multiple_choice.R | 216 - rqti-1.1.0/rqti/tests/testthat/test-rmd2qti.R | 4 rqti-1.1.0/rqti/tests/testthat/test-rqti_project.R |only rqti-1.1.0/rqti/tests/testthat/test-single_choice.R | 390 +- rqti-1.1.0/rqti/tests/testthat/test-text_gap.R | 834 ++--- 42 files changed, 4245 insertions(+), 3915 deletions(-)
Title: Simulate, Evaluate, and Analyze Dose Finding Trials with
Bayesian MCPMod
Description: Bayesian MCPMod (Fleischer et al. (2022)
<doi:10.1002/pst.2193>) is an innovative method that improves the
traditional MCPMod by systematically incorporating historical data,
such as previous placebo group data. This package offers functions
for simulating, analyzing, and evaluating Bayesian MCPMod trials with
normally and binary distributed endpoints. It enables the assessment of trial
designs incorporating historical data across various true
dose-response relationships and sample sizes. Robust mixture prior
distributions, such as those derived with the Meta-Analytic-Predictive
approach (Schmidli et al. (2014) <doi:10.1111/biom.12242>), can be
specified for each dose group. Resulting mixture posterior
distributions are used in the Bayesian Multiple Comparison Procedure
and modeling steps. The modeling step also includes a weighted model
averaging approach (Pinheiro et al. (2014) <doi:10.1002/sim.6052>).
Estimated dose-response relationships can be bootstrapped and
v [...truncated...]
Author: Boehringer Ingelheim Pharma GmbH & Co. KG [cph, fnd],
Stephan Wojciekowski [aut, cre],
Lars Andersen [aut],
Jonas Schick [ctb],
Sebastian Bossert [aut]
Maintainer: Stephan Wojciekowski <stephan.wojciekowski@boehringer-ingelheim.com>
Diff between BayesianMCPMod versions 1.2.0 dated 2025-08-28 and 1.3.0 dated 2026-02-23
DESCRIPTION | 10 MD5 | 96 + NEWS.md | 10 R/BMCPMod.R | 357 +----- R/assessDesign.R |only R/bootstrapping.R | 52 R/modeling.R | 337 +++-- R/plot.R | 104 + R/posterior.R | 69 - R/s3methods.R | 170 ++ R/simulation.R | 87 - R/utils.R |only README.md | 9 build/vignette.rds |binary inst/CITATION | 2 inst/WORDLIST | 25 inst/doc/Simulation_Comparison.Rmd | 15 inst/doc/Simulation_Comparison.html | 1157 +++++++++----------- inst/doc/Simulation_Example.R | 11 inst/doc/Simulation_Example.Rmd | 38 inst/doc/Simulation_Example.html | 1204 ++++++++++---------- inst/doc/Simulation_Example_Binary.R |only inst/doc/Simulation_Example_Binary.Rmd |only inst/doc/Simulation_Example_Binary.html |only inst/doc/analysis_normal.R | 78 - inst/doc/analysis_normal.Rmd | 113 - inst/doc/analysis_normal.html | 1263 +++++++++++----------- inst/doc/binary_endpoint.R |only inst/doc/binary_endpoint.Rmd |only inst/doc/binary_endpoint.html |only man/assessDesign.Rd | 91 + man/getBootstrapQuantiles.Rd | 10 man/getBootstrapSamples.Rd | 9 man/getESS.Rd | 10 man/getMED.Rd | 8 man/getModelFits.Rd | 15 man/getPosterior.Rd | 15 man/performBayesianMCPMod.Rd | 9 man/plot.modelFits.Rd | 13 man/predict.modelFits.Rd | 11 man/simulateData.Rd | 34 tests/testthat/test-BMCPMod.R | 190 --- tests/testthat/test-assessDesign.R |only tests/testthat/test-binary-bmcpmod.R |only tests/testthat/test-binary-bootstrapping.R |only tests/testthat/test-binary-internal-calibration.R |only tests/testthat/test-binary-mcp-type1-power.R |only tests/testthat/test-binary-med.R |only tests/testthat/test-binary-modeling.R |only tests/testthat/test-binary-plausibility.R |only tests/testthat/test-binary-posterior.R |only tests/testthat/test-binary-ppc.R |only tests/testthat/test-binary-sbc-coverage.R |only tests/testthat/test-binary-simulation.R |only vignettes/Simulation_Comparison.Rmd | 15 vignettes/Simulation_Example.Rmd | 38 vignettes/Simulation_Example_Binary.Rmd |only vignettes/analysis_normal.Rmd | 113 - vignettes/binary_endpoint.Rmd |only vignettes/references.bib | 51 60 files changed, 2895 insertions(+), 2944 deletions(-)
More information about BayesianMCPMod at CRAN
Permanent link
Title: 'eXtra' / 'eXperimental' Functionality for Robust Statistics
Description: Robustness -- 'eXperimental', 'eXtraneous', or 'eXtraordinary'
Functionality for Robust Statistics. Hence methods which are not well established,
often related to methods in package 'robustbase'. Amazingly, 'BACON()', originally by
Billor, Hadi, and Velleman (2000) <doi:10.1016/S0167-9473(99)00101-2>
has become established in places. The "barrow wheel" `rbwheel()` is from
Stahel and Mächler (2009) <doi:10.1111/j.1467-9868.2009.00706.x>.
Author: Martin Maechler [aut, cre] ,
Werner A. Stahel [aut],
Rolf Turner [ctb] ),
Ueli Oetliker [ctb] and mvBACON for S+),
Tobias Schoch [ctb]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between robustX versions 1.2-7 dated 2023-06-16 and 1.2-8 dated 2026-02-23
ChangeLog | 7 +++ DESCRIPTION | 17 ++++++-- MD5 | 16 ++++---- R/covNNC-orig.R | 12 ++++++ R/covNNC.R | 105 +++++++++++++++++++++++++++++++++++++++--------------- build/partial.rdb |binary man/covNNC.Rd | 25 ++++++++---- man/rbwheel.Rd | 2 - tests/cov-ex.R | 39 ++++++++++++-------- 9 files changed, 157 insertions(+), 66 deletions(-)
Title: Interfaces to Phylogenetic Software in R
Description: Functions that wrap popular phylogenetic software for sequence
alignment, masking of sequence alignments, and estimation of phylogenies and
ancestral character states.
Author: Christoph Heibl [aut],
Natalie Cusimano [aut],
Franz-Sebastian Krah [aut],
Martin R. Smith [ctb, cre]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
This is a re-admission after prior archival of version 0.0.12 dated 2024-04-23
Diff between ips versions 0.0.12 dated 2024-04-23 and 0.0.13 dated 2026-02-23
DESCRIPTION | 26 +++-- MD5 | 132 ++++++++++++++--------------- NEWS.md | 134 +++++++++++++++-------------- R/DNAbin2index.R | 4 R/EmptyCells.R | 8 - R/aliscore.R | 1 R/collapseUnsupportedEdges.R | 6 - R/combMyTree.R | 6 - R/del.miss.R | 4 R/deleteGaps.R | 6 - R/forceEqualTipHeights.R | 78 ++++++++--------- R/gblocks.R | 3 R/index2DNAbin.R | 4 R/mafft.R | 2 R/mafft.merge.R | 8 - R/mrbayes.R | 2 R/neighboringPairs.R | 4 R/ntip.R | 4 R/oi.R | 154 ++++++++++++++++----------------- R/pathd8.R | 6 - R/phylo2mafft.R | 2 R/phylo2mst.R | 4 R/pis.R | 4 R/raxml.R | 4 R/rbeauti.R | 2 R/read.R | 66 +++++++------- R/sister.R | 2 R/splitIntoClades.R | 4 R/terminalSisters.R | 2 man/DNAbin2index.Rd | 2 man/EmptyCells.Rd | 6 - man/aliscore.Rd | 2 man/code.simple.gaps.Rd | 4 man/collapseUnsupportedEdges.Rd | 4 man/combMyTree.Rd | 4 man/del.miss.Rd | 2 man/deleteGaps.Rd | 4 man/descendants.Rd | 74 ++++++++-------- man/fixNodes.Rd | 96 ++++++++++----------- man/forceEqualTipHeights.Rd | 8 - man/gblocks.Rd | 3 man/index2DNAbin.Rd | 2 man/ips-package.Rd | 56 ++++++------ man/ips.16S.Rd | 2 man/ips.28S.Rd | 2 man/ips.cox1.Rd | 2 man/mafft.Rd | 2 man/mafft.merge.Rd | 8 - man/mrbayes.Rd | 2 man/multistate.Rd | 128 ++++++++++++++-------------- man/neighboringPairs.Rd | 2 man/ntip.Rd | 2 man/oi.Rd | 2 man/pathd8.Rd | 4 man/phylo2mafft.Rd | 2 man/phylo2mst.Rd | 2 man/pis.Rd | 2 man/raxml.Rd | 4 man/raxml.partitions.Rd | 80 ++++++++--------- man/rbeauti.Rd | 2 man/read.Rd | 2 man/sister.Rd | 2 man/splitIntoClades.Rd | 2 man/terminalSisters.Rd | 2 man/tipHeights.Rd | 52 +++++------ man/traitRate.Rd | 92 ++++++++++---------- man/write.fas.Rd | 182 ++++++++++++++++++++-------------------- 67 files changed, 768 insertions(+), 763 deletions(-)
Title: A Grammar of Graphics for Comparative Genomics
Description: An extension of 'ggplot2' for creating complex genomic
maps. It builds on the power of 'ggplot2' and 'tidyverse' adding new 'ggplot2'-style
geoms & positions and 'dplyr'-style verbs to manipulate the underlying data. It
implements a layout concept inspired by 'ggraph' and introduces tracks to bring
tidiness to the mess that is genomics data.
Author: Thomas Hackl [aut, cre],
Markus J. Ankenbrand [aut],
Bart van Adrichem [aut],
Kristina Haslinger [ctb, sad]
Maintainer: Thomas Hackl <t.hackl@rug.nl>
Diff between gggenomes versions 1.1.2 dated 2025-11-14 and 1.1.3 dated 2026-02-23
gggenomes-1.1.2/gggenomes/inst/doc/gggenomes.pdf |only gggenomes-1.1.3/gggenomes/DESCRIPTION | 6 gggenomes-1.1.3/gggenomes/MD5 | 38 +++--- gggenomes-1.1.3/gggenomes/NEWS.md | 5 gggenomes-1.1.3/gggenomes/R/geom_gene.R | 6 gggenomes-1.1.3/gggenomes/R/position_strandpile.R | 6 gggenomes-1.1.3/gggenomes/R/read.R | 2 gggenomes-1.1.3/gggenomes/build/partial.rdb |binary gggenomes-1.1.3/gggenomes/build/vignette.rds |binary gggenomes-1.1.3/gggenomes/inst/doc/emales.html | 139 ++++++++++++---------- gggenomes-1.1.3/gggenomes/inst/doc/flip.html | 116 ++++++++---------- gggenomes-1.1.3/gggenomes/inst/doc/gggenomes.Rmd | 2 gggenomes-1.1.3/gggenomes/inst/doc/gggenomes.html |only gggenomes-1.1.3/gggenomes/man/def_formats.Rd | 22 +-- gggenomes-1.1.3/gggenomes/man/read_bed.Rd | 19 +-- gggenomes-1.1.3/gggenomes/man/read_blast.Rd | 19 +-- gggenomes-1.1.3/gggenomes/man/read_gbk.Rd | 19 +-- gggenomes-1.1.3/gggenomes/man/read_gff3.Rd | 19 +-- gggenomes-1.1.3/gggenomes/man/read_paf.Rd | 19 +-- gggenomes-1.1.3/gggenomes/man/read_vcf.Rd | 19 +-- gggenomes-1.1.3/gggenomes/vignettes/gggenomes.Rmd | 2 21 files changed, 225 insertions(+), 233 deletions(-)
Title: Collection of Utility Functions for Data Analysis and Computing
Description: Provides utility functions for data analysis and scientific computing. Includes functions for logging, parallel processing, and other computational tasks to streamline workflows.
Author: Meng Xu [aut, cre]
Maintainer: Meng Xu <mengxu98@qq.com>
Diff between thisutils versions 0.3.6 dated 2026-01-08 and 0.4.2 dated 2026-02-23
DESCRIPTION | 11 +- MD5 | 27 +++--- NAMESPACE | 2 NEWS.md | 33 +++++++ R/RcppExports.R | 7 - R/add_pkg_file.R | 204 +++++++++++++++++++++++++++++++++++------------- R/check_r.R |only R/parallelize_fun.R | 2 R/thisutils-package.R | 12 +- man/add_pkg_file.Rd | 8 - man/check_r.Rd |only man/matrix_to_table.Rd | 5 - man/remove_r.Rd |only man/table_to_matrix.Rd | 6 - src/matrix_to_table.cpp | 193 ++++++++++++++++++++++++++++++++++++++------- src/table_to_matrix.cpp | 43 ++++------ 16 files changed, 417 insertions(+), 136 deletions(-)
More information about sunburstShinyWidget at CRAN
Permanent link
Title: 'Rcpp' Integration for the 'Blaze' High-Performance 'C++' Math
Library
Description: Blaze is an open-source, high-performance 'C++' math library for dense and sparse arithmetic.
With its state-of-the-art Smart Expression Template implementation Blaze combines the elegance and
ease of use of a domain-specific language with HPC-grade performance, making it one of the most
intuitive and fastest 'C++' math libraries available. The 'RcppBlaze' package includes the header files
from the 'Blaze' library with disabling some functionalities related to link to the thread and system
libraries which make 'RcppBlaze' be a header-only library. Therefore, users do not need to install
'Blaze'.
Author: Ching-Chuan Chen [aut, cre, ctr] ,
Klaus Iglberger [aut] ,
Georg Georg [aut] ,
Tobias Scharpff [aut]
Maintainer: Ching-Chuan Chen <zw12356@gmail.com>
Diff between RcppBlaze versions 1.0.1 dated 2024-05-08 and 1.0.2 dated 2026-02-23
DESCRIPTION | 14 ++++---- MD5 | 16 +++++----- build/partial.rdb |binary inst/include/RcppBlazeForward.h | 17 ++++++++++ man/blaze_seed.Rd | 40 ++++++++++++------------- man/blaze_threads.Rd | 46 ++++++++++++++-------------- man/blaze_version.Rd | 46 ++++++++++++++-------------- man/fastLmPure.Rd | 64 ++++++++++++++++++++-------------------- src/Makevars | 1 9 files changed, 131 insertions(+), 113 deletions(-)
Title: R Client for the 'OMOPHub' Medical Vocabulary API
Description: Provides an R interface to the 'OMOPHub' API for accessing
'OHDSI ATHENA' standardized medical vocabularies. Supports concept search,
semantic search using neural embeddings, concept similarity, vocabulary
exploration, hierarchy navigation, relationship queries, and concept
mappings with automatic pagination and rate limiting.
Author: Alex Chen [aut, cre, cph],
Observational Health Data Science and Informatics [cph]
Maintainer: Alex Chen <alex@omophub.com>
Diff between omophub versions 1.3.0 dated 2026-01-08 and 1.4.0 dated 2026-02-23
DESCRIPTION | 11 MD5 | 36 - NEWS.md | 16 R/mappings.R | 48 ++ R/request.R | 2 R/search.R | 195 ++++++++++ README.md | 31 + inst/doc/getting-started.R | 52 ++ inst/doc/getting-started.Rmd | 71 +++ inst/doc/getting-started.html | 162 +++++--- inst/examples/map_between_vocabularies.R | 4 inst/examples/search_concepts.R | 102 +++++ man/MappingsResource.Rd | 12 man/SearchResource.Rd | 149 ++++++++ tests/testthat/test-mappings-integration.R | 56 ++- tests/testthat/test-mappings.R | 94 ++++- tests/testthat/test-search-integration.R | 212 +++++++++++ tests/testthat/test-search.R | 534 +++++++++++++++++++++++++++++ vignettes/getting-started.Rmd | 71 +++ 19 files changed, 1748 insertions(+), 110 deletions(-)
Title: Kernel Balancing
Description: Provides a weighting approach that employs kernels to make one group have a similar distribution to another group on covariates. This method matches not only means or marginal distributions but also higher-order transformations implied by the choice of kernel. 'kbal' is applicable to both treatment effect estimation and survey reweighting problems. Based on Hazlett, C. (2020) "Kernel Balancing: A flexible non-parametric weighting procedure for estimating causal effects." Statistica Sinica. <https://www.researchgate.net/publication/299013953_Kernel_Balancing_A_flexible_non-parametric_weighting_procedure_for_estimating_causal_effects>.
Author: Chad Hazlett [aut, cph],
Ciara Sterbenz [aut],
Erin Hartman [ctb],
Alex Kravetz [ctb],
Borna Bateni [aut, cre]
Maintainer: Borna Bateni <borna@ucla.edu>
Diff between kbal versions 0.1.3 dated 2025-07-06 and 0.1.4 dated 2026-02-23
DESCRIPTION | 8 +- MD5 | 12 +-- NEWS.md | 6 + R/functions.R | 218 ++++++++++++++++++++++++++++++++++++++++++++++----------- man/getdist.Rd | 5 + man/getw.Rd | 17 +++- man/kbal.Rd | 7 + 7 files changed, 218 insertions(+), 55 deletions(-)
Title: Tools for the Analysis of Epidemiological Data
Description: Tools for the analysis of epidemiological and surveillance data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, computation of confidence intervals around incidence risk and incidence rate estimates and sample size calculations for cross-sectional, case-control and cohort studies. Surveillance tools include functions to calculate an appropriate sample size for 1- and 2-stage representative freedom surveys, functions to estimate surveillance system sensitivity and functions to support scenario tree modelling analyses.
Author: Mark Stevenson [aut, cre] ,
Evan Sergeant [aut],
Cord Heuer [ctb],
Telmo Nunes [ctb],
Cord Heuer [ctb],
Jonathon Marshall [ctb],
Javier Sanchez [ctb],
Ron Thornton [ctb],
Jeno Reiczigel [ctb],
Jim Robison-Cox [ctb],
Paola Sebastiani [ctb],
Peter Soly [...truncated...]
Maintainer: Mark Stevenson <mark.stevenson1@unimelb.edu.au>
Diff between epiR versions 2.0.90 dated 2026-02-11 and 2.0.91 dated 2026-02-23
DESCRIPTION | 8 +- MD5 | 32 ++++----- NEWS | 7 ++ R/epi.evalue.R | 18 ++--- R/epi.ssdetect.R | 113 +++++++++++++++++------------------ inst/doc/epiR_descriptive_epi.html | 18 ++--- inst/doc/epiR_diagnostic_tests.R | 2 inst/doc/epiR_diagnostic_tests.Rmd | 4 - inst/doc/epiR_diagnostic_tests.html | 31 ++++----- inst/doc/epiR_measures_of_assoc.Rmd | 2 inst/doc/epiR_measures_of_assoc.html | 18 ++--- inst/doc/epiR_sample_size.html | 4 - inst/doc/epiR_surveillance.html | 14 ++-- man/epi.evalue.Rd | 14 ++-- man/epi.ssdetect.Rd | 69 +++++++++++---------- vignettes/epiR_diagnostic_tests.Rmd | 4 - vignettes/epiR_measures_of_assoc.Rmd | 2 17 files changed, 186 insertions(+), 174 deletions(-)
Title: Data Processing for Aquatic Ecology
Description: Facilitate the analysis of data related to aquatic ecology, specifically the establishment of carbon budget.
Currently, the package allows the below analysis.
(i) the calculation of greenhouse gas flux based on data obtained from trace gas analyzer using the method described in Lin et al. (2024).
(ii) the calculation of Dissolved Oxygen (DO) metabolism based on data obtained from dissolved oxygen data logger using the method described in Staehr et al. (2010).
Yong et al. (2024) <doi:10.5194/bg-21-5247-2024>.
Staehr et al. (2010) <doi:10.4319/lom.2010.8.0628>.
Author: Zhao-Jun Yong [cre, aut]
Maintainer: Zhao-Jun Yong <nuannuan0425@gmail.com>
Diff between aelab versions 1.0.1 dated 2025-01-08 and 1.1.0 dated 2026-02-23
DESCRIPTION | 13 +- MD5 | 41 +++++- NAMESPACE | 59 +++++++++ NEWS.md | 26 ++++ R/ghg_flux.R | 254 ++++++++++++++++++++++++++++------------- R/hobo_do.R | 204 +++++++++++++++++++++----------- R/lab_analysis.R |only R/statistics.R |only R/visualization.R |only man/aelab_palettes.Rd |only man/aov_test.Rd |only man/calc_chla_trichromatic.Rd |only man/calculate_MDF.Rd |only man/calculate_total_co2e.Rd |only man/combine_weather_month.Rd |only man/convert_ghg_unit.Rd | 45 +++++-- man/descriptive_statistic.Rd |only man/df_trans.Rd |only man/find_outlier.Rd |only man/ks_test.Rd |only man/normality_test_aov.Rd |only man/normality_test_t.Rd |only man/plot_bar.Rd |only man/plot_box.Rd |only man/plot_line.Rd |only man/plot_map_taiwan.Rd |only man/plot_point.Rd |only man/process_weather_month.Rd |only man/scale_colour_aelab_c.Rd |only man/scale_colour_aelab_d.Rd |only man/scale_fill_aelab_c.Rd |only man/scale_fill_aelab_d.Rd |only tests/testthat/test-ghg_flux.R | 7 - tests/testthat/test-hobo_do.R | 2 34 files changed, 475 insertions(+), 176 deletions(-)
Title: Tidying and Visualizing Animal Pedigrees
Description: Built on graph theory and the high-performance 'data.table' framework,
this package provides a comprehensive suite of tools for tidying, analyzing,
and visualizing animal pedigrees. By modeling pedigrees as directed acyclic
graphs using 'igraph', it ensures robust loop detection, efficient
generation assignment, and optimal sub-population splitting. Key features
include standardizing pedigree formats, flexible ancestry tracing, and
generating legible vector-based PDF graphs. A unique compaction algorithm
enables the visualization of massive pedigrees by grouping full-sib families.
Furthermore, the package implements high-performance C++ algorithms for
calculating and visualizing genetic relationship matrices (A, D, AA, and
their inverses) and inbreeding coefficients.
Author: Sheng Luan [aut, cre]
Maintainer: Sheng Luan <luansheng@gmail.com>
Diff between visPedigree versions 0.7.1 dated 2026-01-21 and 1.0.1 dated 2026-02-23
DESCRIPTION | 27 +- MD5 | 98 +++++--- NAMESPACE | 28 ++ NEWS.md | 73 +++++- R/RcppExports.R |only R/data.R | 5 R/globals.R | 29 ++ R/inbreed.R | 51 +--- R/pedmatrix.R |only R/splitped.R |only R/tidyped.R | 276 ++++++++++++++---------- R/utils-s3.R | 210 ++++++++++++++++-- R/vismat.R |only R/visped.R | 227 ++++++++++++++----- R/visped_graph.R | 4 R/visped_layout.R | 10 R/visped_style.R | 62 ++++- README.md | 70 +++--- build/vignette.rds |binary inst/doc/draw-pedigree.R | 49 ++-- inst/doc/draw-pedigree.Rmd | 93 ++++---- inst/doc/draw-pedigree.html | 126 +++++------ inst/doc/relationship-matrix.R |only inst/doc/relationship-matrix.Rmd |only inst/doc/relationship-matrix.html |only inst/doc/tidy-pedigree.R | 32 ++ inst/doc/tidy-pedigree.Rmd | 76 +++++- inst/doc/tidy-pedigree.html | 365 ++++++++++++++++++++++---------- man/big_family_size_ped.Rd | 2 man/compact_ped_for_matrix.Rd |only man/expand_pedmat.Rd |only man/fade_cols.Rd |only man/finalize_graph.Rd | 2 man/inbreed.Rd | 4 man/pedmat.Rd |only man/query_relationship.Rd |only man/simple_ped.Rd | 3 man/splitped.Rd |only man/summary.tidyped.Rd | 12 - man/summary_pedmat.Rd |only man/tidyped.Rd | 16 + man/vismat.Rd |only man/visped.Rd | 60 ++++- src |only tests/manual |only tests/testthat/Rplots.pdf |only tests/testthat/test-edge-cases.R |only tests/testthat/test-inbreed.R |only tests/testthat/test-pedmat-compact.R |only tests/testthat/test-pedmat-threads.R |only tests/testthat/test-pedmat.R |only tests/testthat/test-splitped.R |only tests/testthat/test-summary-tidyped.R |only tests/testthat/test-tidyped-alignment.R |only tests/testthat/test-tidyped.R | 32 +- tests/testthat/test-visped-layout.R |only tests/testthat/test_highlight_edges.R |only vignettes/draw-pedigree.Rmd | 93 ++++---- vignettes/relationship-matrix.Rmd |only vignettes/tidy-pedigree.Rmd | 76 +++++- 60 files changed, 1525 insertions(+), 686 deletions(-)
Title: Utility Functions for Plotting
Description: Provides utility functions for plotting. Includes functions for color manipulation, plot customization, panel size control, data optimization for plots, and layout adjustments.
Author: Meng Xu [aut, cre]
Maintainer: Meng Xu <mengxu98@qq.com>
Diff between thisplot versions 0.3.2 dated 2026-01-11 and 0.3.5 dated 2026-02-23
DESCRIPTION | 15 MD5 | 24 NAMESPACE | 12 NEWS.md | 20 R/StatPlot.R |only R/reexports.R | 19 R/sankey.R |only R/thisplot-package.R | 11 R/utils.R | 1 README.md | 4473 --------------------------------------------- man/StatPlot.Rd |only man/geom_alluvial.Rd |only man/geom_alluvial_label.Rd |only man/geom_sankey.Rd |only man/geom_sankey_bump.Rd |only man/geom_sankey_label.Rd |only man/make_long.Rd |only man/theme_sankey.Rd |only 18 files changed, 81 insertions(+), 4494 deletions(-)
Title: A Simple Package for Testing R Packages
Description: Provides two convenience functions assert() and test_pkg() to
facilitate testing R packages.
Author: Yihui Xie [aut, cre] ,
Tomas Kalibera [ctb],
Steven Mortimer [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between testit versions 0.15 dated 2025-12-19 and 0.16 dated 2026-02-23
DESCRIPTION | 7 - LICENSE | 2 MD5 | 16 +- R/testit.R | 89 +++++++++------ R/utils.R | 187 +++++++++++++++++++++++++++++++- man/test_pkg.Rd | 53 +++++---- tests/test-all.R | 7 + tests/testit/test-assert.R | 6 - tests/testit/test-snapshots-advanced.md |only tests/testit/test-snapshots-basic.md |only 10 files changed, 293 insertions(+), 74 deletions(-)
Title: Pipeline for Topological Data Analysis
Description: A comprehensive toolset for any
useR conducting topological data analysis, specifically via the
calculation of persistent homology in a Vietoris-Rips complex.
The tools this package currently provides can be conveniently split
into three main sections: (1) calculating persistent homology; (2)
conducting statistical inference on persistent homology calculations;
(3) visualizing persistent homology and statistical inference.
The published form of TDAstats can be found in Wadhwa et al. (2018)
<doi:10.21105/joss.00860>.
For a general background on computing persistent homology for
topological data analysis, see Otter et al. (2017)
<doi:10.1140/epjds/s13688-017-0109-5>.
To learn more about how the permutation test is used for
nonparametric statistical inference in topological data analysis,
read Robinson & Turner (2017) <doi:10.1007/s41468-017-0008-7>.
To learn more about how TDAstats calculates persistent homology,
you can visit the GitHub repository for Ripser, the s [...truncated...]
Author: Raoul Wadhwa [aut],
Andrew Dhawan [aut],
Drew Williamson [aut],
Jacob Scott [aut],
Jason Cory Brunson [aut, cre],
Shota Ochi [ctb]
Maintainer: Jason Cory Brunson <cornelioid@gmail.com>
Diff between TDAstats versions 0.4.1 dated 2019-12-12 and 0.4.2 dated 2026-02-23
DESCRIPTION | 25 MD5 | 52 - R/RcppExports.R | 8 R/TDAstats.R | 3 R/calculate.R | 101 ++- R/data.R | 8 build/vignette.rds |binary inst/CITATION | 8 inst/doc/inference.R | 16 inst/doc/inference.html | 886 ++++++++++++++++++++------------- inst/doc/inputformat.R | 14 inst/doc/inputformat.html | 673 +++++++++++++++---------- inst/doc/intro.R | 30 - inst/doc/intro.Rmd | 6 inst/doc/intro.html | 849 ++++++++++++++++++++----------- man/TDAstats.Rd | 27 - man/calculate_homology.Rd | 13 man/circle2d.Rd | 6 man/permutation_test.Rd | 3 man/sphere3d.Rd | 6 man/unif2d.Rd | 6 man/unif3d.Rd | 6 src/RcppExports.cpp | 31 - src/ripser_short.cpp | 88 ++- tests/testthat/test_calculate_errors.R | 4 tests/testthat/test_ripser_accurate.R | 17 vignettes/intro.Rmd | 6 27 files changed, 1820 insertions(+), 1072 deletions(-)
Title: Retrieve Genomic and Clinical Data from CBioPortal Including
TCGA Data
Description: The Cancer Genome Atlas (TCGA) is a program aimed at improving our understanding of Cancer Biology. Several TCGA Datasets are available online. 'TCGAretriever' helps accessing and downloading TCGA data hosted on 'cBioPortal' via its Web Interface (see <https://www.cbioportal.org/> for more information).
Author: Damiano Fantini [aut, cre]
Maintainer: Damiano Fantini <damiano.fantini@gmail.com>
This is a re-admission after prior archival of version 1.10.1 dated 2025-11-20
Diff between TCGAretriever versions 1.10.1 dated 2025-11-20 and 1.10.3 dated 2026-02-23
TCGAretriever-1.10.1/TCGAretriever/R/tcgaretriever_v_1_10_1.R |only TCGAretriever-1.10.1/TCGAretriever/inst/doc/getting_started_with_TCGAretriever.R |only TCGAretriever-1.10.1/TCGAretriever/inst/doc/getting_started_with_TCGAretriever.Rmd |only TCGAretriever-1.10.1/TCGAretriever/inst/doc/getting_started_with_TCGAretriever.html |only TCGAretriever-1.10.1/TCGAretriever/vignettes/getting_started_with_TCGAretriever.Rmd |only TCGAretriever-1.10.3/TCGAretriever/DESCRIPTION | 8 - TCGAretriever-1.10.3/TCGAretriever/MD5 | 45 +++++----- TCGAretriever-1.10.3/TCGAretriever/NAMESPACE | 1 TCGAretriever-1.10.3/TCGAretriever/R/tcgaretriever_v_1_10_3.R |only TCGAretriever-1.10.3/TCGAretriever/build/vignette.rds |binary TCGAretriever-1.10.3/TCGAretriever/inst/doc/get_started_with_TCGAretriever.R |only TCGAretriever-1.10.3/TCGAretriever/inst/doc/get_started_with_TCGAretriever.Rmd |only TCGAretriever-1.10.3/TCGAretriever/inst/doc/get_started_with_TCGAretriever.html |only TCGAretriever-1.10.3/TCGAretriever/man/TCGAretriever-package.Rd | 2 TCGAretriever-1.10.3/TCGAretriever/man/blcaOutputExamples.Rd | 2 TCGAretriever-1.10.3/TCGAretriever/man/cb_query.Rd | 2 TCGAretriever-1.10.3/TCGAretriever/man/check_TCGAretriever_connection.Rd |only TCGAretriever-1.10.3/TCGAretriever/man/expand_cases.Rd | 2 TCGAretriever-1.10.3/TCGAretriever/man/fetch_all_tcgadata.Rd | 2 TCGAretriever-1.10.3/TCGAretriever/man/get_cancer_studies.Rd | 2 TCGAretriever-1.10.3/TCGAretriever/man/get_cancer_types.Rd | 2 TCGAretriever-1.10.3/TCGAretriever/man/get_case_lists.Rd | 2 TCGAretriever-1.10.3/TCGAretriever/man/get_clinical_data.Rd | 2 TCGAretriever-1.10.3/TCGAretriever/man/get_gene_identifiers.Rd | 2 TCGAretriever-1.10.3/TCGAretriever/man/get_genetic_profiles.Rd | 2 TCGAretriever-1.10.3/TCGAretriever/man/get_molecular_data.Rd | 2 TCGAretriever-1.10.3/TCGAretriever/man/get_mutation_data.Rd | 2 TCGAretriever-1.10.3/TCGAretriever/man/make_groups.Rd | 2 TCGAretriever-1.10.3/TCGAretriever/vignettes/get_started_with_TCGAretriever.Rmd |only 29 files changed, 42 insertions(+), 40 deletions(-)
Title: Swash-Backwash Model for the Single Epidemic Wave
Description: The Swash-Backwash Model for the Single Epidemic Wave was developed by Cliff and Haggett (2006) <doi:10.1007/s10109-006-0027-8> to model the velocity of spread of infectious diseases across space. This package enables the calculation of the Swash-Backwash Model for user-supplied panel data on regional infections. The package provides additional functions for bootstrap confidence intervals, country comparison, visualization of results, and data management. Furthermore, it contains several functions for analysis and visualization of (spatial) infection data.
Author: Thomas Wieland [aut, cre]
Maintainer: Thomas Wieland <geowieland@googlemail.com>
Diff between swash versions 1.3.2 dated 2026-02-15 and 1.3.3 dated 2026-02-23
DESCRIPTION | 8 - MD5 | 14 - NEWS.md | 8 - R/swash.R | 352 +++++++++++++++++++++++++++----------------- man/growth.Rd | 2 man/growth_initial.Rd | 2 man/plot_regions-methods.Rd | 2 man/plot_regions.Rd | 2 8 files changed, 241 insertions(+), 149 deletions(-)
Title: Embed 'SWI'-'Prolog'
Description: Interface to 'SWI'-'Prolog', <https://www.swi-prolog.org/>. This package is normally not loaded directly, please refer to package 'rolog' instead. The purpose of this package is to provide the 'Prolog' runtime on systems that do not have a software installation of 'SWI'-'Prolog'.
Author: Matthias Gondan [aut, com, cre] ,
Jan Wielemaker [ctb, cph] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
Diff between rswipl versions 10.1.1.1 dated 2026-01-21 and 10.1.4 dated 2026-02-23
DESCRIPTION | 8 MD5 | 319 +++++----- NEWS.md | 18 R/rswipl.R | 2 src/install.libs.R | 2 src/swipl-devel/CMakeLists.txt | 3 src/swipl-devel/VERSION | 2 src/swipl-devel/bench/compare.pl | 34 - src/swipl-devel/bench/run.pl | 4 src/swipl-devel/boot/build_home.pl | 84 +- src/swipl-devel/cmake/BuildType.cmake | 94 ++ src/swipl-devel/cmake/Config.cmake | 13 src/swipl-devel/cmake/LibIndex.cmake | 43 - src/swipl-devel/cmake/PackageSelection.cmake | 10 src/swipl-devel/cmake/QLF.cmake | 3 src/swipl-devel/cmake/RuntimeDependencies.cmake | 1 src/swipl-devel/cmake/Utils.cmake | 10 src/swipl-devel/cmake/port/Darwin.cmake | 9 src/swipl-devel/cmake/port/Windows.cmake | 16 src/swipl-devel/library/ansi_term.pl | 1 src/swipl-devel/library/check_installation.pl | 103 +-- src/swipl-devel/library/console_input.pl | 136 +++- src/swipl-devel/library/debug.pl | 2 src/swipl-devel/library/edit.pl | 1 src/swipl-devel/library/listing.pl | 115 +++ src/swipl-devel/library/lists.pl | 47 - src/swipl-devel/library/main.pl | 2 src/swipl-devel/library/record.pl | 26 src/swipl-devel/library/shlib.pl | 8 src/swipl-devel/packages/archive/archive4pl.c | 2 src/swipl-devel/packages/bdb/bdb4pl.c | 95 +- src/swipl-devel/packages/clib/cgi.c | 33 - src/swipl-devel/packages/clib/crypt.c | 4 src/swipl-devel/packages/clib/form.c | 76 +- src/swipl-devel/packages/clib/form.h | 28 src/swipl-devel/packages/clib/nonblockio.c | 20 src/swipl-devel/packages/clib/process.pl | 4 src/swipl-devel/packages/clib/sha1/sha1.c | 2 src/swipl-devel/packages/clib/sha1/sha2.c | 8 src/swipl-devel/packages/clib/socket.c | 20 src/swipl-devel/packages/clib/test_udp_sockets.pl | 2 src/swipl-devel/packages/clib/time.c | 6 src/swipl-devel/packages/clib/unix.c | 2 src/swipl-devel/packages/clib/utf8.h | 43 - src/swipl-devel/packages/cmake/PrologPackage.cmake | 14 src/swipl-devel/packages/cpp/SWI-cpp.h | 22 src/swipl-devel/packages/cpp/SWI-cpp2-plx.h | 2 src/swipl-devel/packages/cpp/SWI-cpp2.cpp | 24 src/swipl-devel/packages/cpp/SWI-cpp2.h | 25 src/swipl-devel/packages/cpp/pl2cpp.doc | 51 + src/swipl-devel/packages/cpp/test_cpp.cpp | 18 src/swipl-devel/packages/cpp/test_cpp.cpp.orig |only src/swipl-devel/packages/cpp/test_cpp.pl | 13 src/swipl-devel/packages/cpp/test_cpp.pl.orig |only src/swipl-devel/packages/http/CMakeLists.txt | 4 src/swipl-devel/packages/http/http_header.pl | 64 -- src/swipl-devel/packages/http/websocket.c | 33 - src/swipl-devel/packages/json/json.c | 4 src/swipl-devel/packages/pcre/cmake/FindPCRE.cmake | 11 src/swipl-devel/packages/sgml/charmap.c | 2 src/swipl-devel/packages/sgml/dtd.h | 18 src/swipl-devel/packages/sgml/parser.c | 6 src/swipl-devel/packages/sgml/quote.c | 10 src/swipl-devel/packages/sgml/utf8.c | 46 - src/swipl-devel/packages/sgml/xsd.c | 6 src/swipl-devel/packages/ssl/crypt_blowfish.c | 4 src/swipl-devel/packages/ssl/cryptolib.c | 8 src/swipl-devel/packages/ssl/ssl4pl.c | 2 src/swipl-devel/packages/table/order.c | 28 src/swipl-devel/packages/table/table.c | 28 src/swipl-devel/packages/utf8proc/unicode4pl.c | 8 src/swipl-devel/packages/utf8proc/utf8proc.c | 8 src/swipl-devel/packages/xpce/CMakeLists.txt | 8 src/swipl-devel/packages/xpce/cmake/XPCEConfig.cmake | 4 src/swipl-devel/packages/xpce/config.h.cmake | 1 src/swipl-devel/packages/xpce/man/interface/callback.doc | 4 src/swipl-devel/packages/xpce/prolog/lib/emacs/prolog_mode.pl | 26 src/swipl-devel/packages/xpce/prolog/lib/emacs_extend.pl | 10 src/swipl-devel/packages/xpce/prolog/lib/trace/gui.pl | 40 - src/swipl-devel/packages/xpce/src/gra/listbrowser.c | 6 src/swipl-devel/packages/xpce/src/gra/scrollbar.c | 19 src/swipl-devel/packages/xpce/src/gra/text.c | 6 src/swipl-devel/packages/xpce/src/h/kernel.h | 17 src/swipl-devel/packages/xpce/src/itf/stub.c | 8 src/swipl-devel/packages/xpce/src/ker/goodies.c | 6 src/swipl-devel/packages/xpce/src/ker/programobject.c | 2 src/swipl-devel/packages/xpce/src/ker/self.c | 23 src/swipl-devel/packages/xpce/src/md/md-windows.h | 3 src/swipl-devel/packages/xpce/src/men/button.c | 4 src/swipl-devel/packages/xpce/src/men/diagroup.c | 4 src/swipl-devel/packages/xpce/src/men/label.c | 6 src/swipl-devel/packages/xpce/src/men/labelbox.c | 8 src/swipl-devel/packages/xpce/src/men/menu.c | 12 src/swipl-devel/packages/xpce/src/men/popup.c | 11 src/swipl-devel/packages/xpce/src/men/slider.c | 4 src/swipl-devel/packages/xpce/src/men/tab.c | 4 src/swipl-devel/packages/xpce/src/men/textitem.c | 6 src/swipl-devel/packages/xpce/src/sdl/sdldraw.c | 168 +++-- src/swipl-devel/packages/xpce/src/sdl/sdldraw.h | 3 src/swipl-devel/packages/xpce/src/txt/editor.c | 10 src/swipl-devel/packages/xpce/src/txt/terminal.c | 17 src/swipl-devel/packages/xpce/src/txt/textbuffer.c | 6 src/swipl-devel/packages/yaml/yaml4pl.c | 6 src/swipl-devel/scripts/configure | 40 + src/swipl-devel/scripts/macos-deps.sh | 40 - src/swipl-devel/scripts/macos-import-x86_64.sh |only src/swipl-devel/scripts/macosx_bundle_fixup.sh | 22 src/swipl-devel/scripts/make-distribution | 91 ++ src/swipl-devel/scripts/make-ppa | 2 src/swipl-devel/src/CMakeLists.txt | 14 src/swipl-devel/src/SWI-Prolog.h | 21 src/swipl-devel/src/config.h.cmake | 2 src/swipl-devel/src/config/wincfg.h | 2 src/swipl-devel/src/libbf/libbf.c | 4 src/swipl-devel/src/minizip/zip.c | 6 src/swipl-devel/src/os/pl-buffer.c | 13 src/swipl-devel/src/os/pl-file.h | 1 src/swipl-devel/src/os/pl-files.c | 18 src/swipl-devel/src/os/pl-prologflag.c | 11 src/swipl-devel/src/os/pl-stream.c | 2 src/swipl-devel/src/os/pl-table.c | 10 src/swipl-devel/src/os/pl-table.h | 4 src/swipl-devel/src/os/pl-text.c | 3 src/swipl-devel/src/pl-alloc.c | 4 src/swipl-devel/src/pl-arith.c | 34 - src/swipl-devel/src/pl-builtin.h | 2 src/swipl-devel/src/pl-dbref.c | 5 src/swipl-devel/src/pl-dict.c | 62 + src/swipl-devel/src/pl-dict.h | 14 src/swipl-devel/src/pl-fli.c | 48 - src/swipl-devel/src/pl-gmp.c | 85 +- src/swipl-devel/src/pl-gmp.h | 58 + src/swipl-devel/src/pl-incl.h | 31 src/swipl-devel/src/pl-init.c | 14 src/swipl-devel/src/pl-load.c | 21 src/swipl-devel/src/pl-main.c | 4 src/swipl-devel/src/pl-mutex.c | 4 src/swipl-devel/src/pl-nt.c | 4 src/swipl-devel/src/pl-nt.h | 2 src/swipl-devel/src/pl-proc.c | 67 ++ src/swipl-devel/src/pl-qlf.c | 2 src/swipl-devel/src/pl-read.c | 2 src/swipl-devel/src/pl-rec.c | 10 src/swipl-devel/src/pl-rec.h | 2 src/swipl-devel/src/pl-termhash.c | 25 src/swipl-devel/src/pl-thread.c | 31 src/swipl-devel/src/pl-thread.h | 5 src/swipl-devel/src/pl-trie.c | 71 +- src/swipl-devel/src/pl-trie.c.save |only src/swipl-devel/src/pl-vmi.c | 4 src/swipl-devel/src/pl-write.c | 197 +++--- src/swipl-devel/src/pl-write.h | 2 src/swipl-devel/src/swipl-ld.1 | 25 src/swipl-devel/src/swipl-ld.c | 166 +++-- src/swipl-devel/tests/GC/test_ch_shift.pl | 71 +- src/swipl-devel/tests/core/test_dict.pl | 8 src/swipl-devel/tests/core/test_hash.pl | 15 src/swipl-devel/tests/files/test_pipe.pl | 15 src/swipl-devel/tests/library/test_record.pl | 52 + src/swipl-devel/tests/save/test_saved_states.pl | 5 src/swipl-devel/tests/test.pl | 3 src/swipl-devel/tests/thread/test_thread_exit.pl |only tests/testthat/test-rswipl.R | 18 163 files changed, 2399 insertions(+), 1467 deletions(-)
Title: Identification of Cell Types, Inference of Lineage Trees, and
Prediction of Noise Dynamics from Single-Cell RNA-Seq Data
Description: Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) <DOI:10.1038/nmeth.4662>). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) <DOI:10.1186/s13059-023-02974-1>).
Author: Dominic Gruen [aut, cre]
Maintainer: Dominic Gruen <dominic.gruen@gmail.com>
Diff between RaceID versions 0.3.9 dated 2024-11-24 and 0.4.0 dated 2026-02-23
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/VarID_functions.R | 5 +++-- inst/doc/RaceID.html | 4 ++-- man/plotPT.Rd | 4 +++- 5 files changed, 16 insertions(+), 13 deletions(-)
Title: Analysis Tools for 'PsyToolkit'
Description: Analyses and reports questionnaire and experiment data exported from 'PsyToolkit'. The package reads downloaded study folders, parses questionnaire structure, optionally merges demographic exports from CloudResearch or Prolific, and produces summary overviews of responses and completion times. It also provides helper functions to extract and aggregate experiment measures and survey variables, and to export results to spreadsheet files for further analysis and archiving. See Stoet (2017) <doi:10.1177/0098628316677643> for the 'PsyToolkit' platform.
Author: Gijsbert Stoet [cre, aut]
Maintainer: Gijsbert Stoet <g.stoet@essex.ac.uk>
Diff between PsyToolkit versions 1.1.0 dated 2026-02-19 and 1.1.2 dated 2026-02-23
PsyToolkit-1.1.0/PsyToolkit/data/d.rda |only PsyToolkit-1.1.0/PsyToolkit/man/d.Rd |only PsyToolkit-1.1.2/PsyToolkit/DESCRIPTION | 9 - PsyToolkit-1.1.2/PsyToolkit/MD5 | 28 +-- PsyToolkit-1.1.2/PsyToolkit/NAMESPACE | 2 PsyToolkit-1.1.2/PsyToolkit/R/psytkExport.r | 28 +-- PsyToolkit-1.1.2/PsyToolkit/R/psytkParseSurvey.r | 14 - PsyToolkit-1.1.2/PsyToolkit/R/psytkReadData.r | 80 ++++---- PsyToolkit-1.1.2/PsyToolkit/R/psytkRemoveData.r | 2 PsyToolkit-1.1.2/PsyToolkit/R/psytkReport.r | 180 +++++++++++--------- PsyToolkit-1.1.2/PsyToolkit/R/psytkTable.r | 207 +++++++++++------------ PsyToolkit-1.1.2/PsyToolkit/R/psytkUtils.r | 6 PsyToolkit-1.1.2/PsyToolkit/data/psytkDemo.rda |only PsyToolkit-1.1.2/PsyToolkit/man/PsyToolkit.Rd | 2 PsyToolkit-1.1.2/PsyToolkit/man/psytkDemo.Rd |only PsyToolkit-1.1.2/PsyToolkit/man/psytkExport.Rd | 9 - PsyToolkit-1.1.2/PsyToolkit/man/psytkReport.Rd | 11 - 17 files changed, 304 insertions(+), 274 deletions(-)
Title: Solutions for Common Problems in Base R
Description: Contains functions for solving commonly encountered problems while
programming in R. This package is intended to provide a lightweight
supplement to Base R, and will be useful for almost any R user.
Author: David Bosak [aut, cre],
Duong Tran [ctb]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between common versions 1.1.4 dated 2025-12-08 and 1.1.5 dated 2026-02-23
DESCRIPTION | 6 - MD5 | 10 - NEWS.md | 7 + R/override_functions.R | 39 +++++- man/sort.data.frame.Rd | 3 tests/testthat/test-override_functions.R | 180 +++++++++++++++++++++++++++++++ 6 files changed, 231 insertions(+), 14 deletions(-)
Title: The Matrix Normal Distribution
Description: Computes densities, probabilities, and random deviates of the Matrix Normal (Pocuca et al. (2019) <doi:10.48550/arXiv.1910.02859>). Also includes simple but useful matrix functions. See the vignette for more information.
Author: Paul M. Hargarten [aut, cre]
Maintainer: Paul M. Hargarten <hargartenp@alumni.vcu.edu>
Diff between matrixNormal versions 0.1.1 dated 2022-09-16 and 0.1.2 dated 2026-02-23
DESCRIPTION | 8 MD5 | 12 NEWS.md | 145 +++--- build/vignette.rds |binary inst/WORDLIST | 11 inst/doc/introduction-to-matrixnormal-package.html | 455 ++++++++++----------- man/matrixNormal_Distribution.Rd | 2 7 files changed, 326 insertions(+), 307 deletions(-)