Title: Analysis of Complex Survey Samples
Description: Summary statistics, two-sample tests, rank tests, generalised linear models, cumulative link models, Cox models, loglinear models, and general maximum pseudolikelihood estimation for multistage stratified, cluster-sampled, unequally weighted survey samples. Variances by Taylor series linearisation or replicate weights. Post-stratification, calibration, and raking. Two-phase and multiphase subsampling designs. Graphics. PPS sampling without replacement. Small-area estimation. Dual-frame designs.
Author: "Thomas Lumley" [cre],
Peter Gao [aut],
Ben Schneider [aut],
Stas Kolenkikov [aut]
Maintainer: "Thomas Lumley" <t.lumley@auckland.ac.nz>
Diff between survey versions 4.4-8 dated 2025-08-28 and 4.5 dated 2026-02-24
DESCRIPTION | 35 ++--- INDEX | 9 + MD5 | 164 ++++++++++++++---------- NAMESPACE | 51 +++++++ R/DBI.R | 6 R/bell_mccaffrey.R |only R/confint.R | 6 R/dAIC.R | 2 R/multiframe.R |only R/multiphase_admin.R |only R/multiphase_inference.R |only R/multistage.R | 73 ++++++++-- R/pps.R | 6 R/regtest.R | 11 + R/reweight_dual.R |only R/survey.R | 299 +++++++++++++++++++++++++++++---------------- R/surveyby.R | 9 + R/surveychisq.R | 16 +- R/surveyrep.R | 86 ++++++++++-- R/svypredmeans.R | 2 R/svyttest.R | 23 +++ R/sysdata.rda |binary R/twophase.R | 44 ++++++ R/twophase2.R | 23 ++- R/withPV.R | 2 R/xval.R |only THANKS | 11 + TODO | 8 - build/vignette.rds |binary data/api.rda |binary data/crowd.rda |binary data/election.rda |binary data/fpc.rda |binary data/hospital.rda |binary data/mu284.rda |binary data/myco.rda |binary data/nhanes.rda |binary data/phoneframes.rda |only data/salamander.rda |binary data/scd.rda |binary data/yrbs.rda |binary inst/CITATION | 6 inst/COPYING | 14 +- inst/NEWS | 88 +++++++++++++ inst/doc/domain.pdf |binary inst/doc/epi.pdf |binary inst/doc/multiphase.R |only inst/doc/multiphase.Rmd |only inst/doc/multiphase.html |only inst/doc/pps.pdf |binary inst/doc/precalibrated.pdf |binary inst/doc/qrule.pdf |binary inst/doc/survey-sae.html | 2 inst/doc/survey.pdf |binary man/bootweights.Rd | 5 man/calibrate.Rd | 9 + man/confint.svyglm.Rd | 26 ++- man/hadamard.Rd | 2 man/multiframe.Rd |only man/multiphase.Rd |only man/phoneframes.Rd |only man/reweight.Rd |only man/smoothArea.Rd | 2 man/surveysummary.Rd | 14 +- man/svrepdesign.Rd | 15 +- man/svy.varcoef.Rd | 7 - man/svyby.Rd | 13 + man/svyciprop.Rd | 34 +++-- man/svycoplot.Rd | 4 man/svycoxph.Rd | 2 man/svydesign.Rd | 17 +- man/svyglm.Rd | 65 ++++++++- man/svylogrank.Rd | 2 man/twophase.Rd | 2 man/withCrossval.Rd |only tests/README | 1 tests/by_covmat_nodrop.R |only tests/check.Rout.save | 15 +- tests/confintrep.R | 9 + tests/db.rda |only tests/degf-subset.R |only tests/glm-scoping.R | 40 +++--- tests/inf_cal_test.R |only tests/mf_frames2.R |only tests/mf_subpop.R |only tests/multiphase_simple.R |only tests/na_weights.R |only tests/nwts.Rout.save | 16 +- tests/predict-NA.R |only tests/rakecheck.R | 23 +-- tests/rakecheck.Rout.save | 78 ++++------- tests/sdata2.rda |only tests/testthat |only tests/testthat.R |only tests/twophase.Rout.save | 19 +- vignettes/multiphase.Rmd |only 96 files changed, 1002 insertions(+), 414 deletions(-)
Title: Identify Characteristics of Patients in the OMOP Common Data
Model
Description: Identify the characteristics of patients in data mapped to the
Observational Medical Outcomes Partnership (OMOP) common data model.
Author: Marti Catala [aut, cre] ,
Yuchen Guo [aut] ,
Mike Du [aut] ,
Kim Lopez-Guell [aut] ,
Edward Burn [aut] ,
Nuria Mercade-Besora [aut] ,
Xintong Li [ctb] ,
Xihang Chen [ctb]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between PatientProfiles versions 1.4.5 dated 2026-01-21 and 1.5.0 dated 2026-02-24
DESCRIPTION | 6 MD5 | 255 +- NAMESPACE | 122 - NEWS.md | 231 + R/PatientProfiles-package.R | 1 R/addBirthDay.R |only R/addCategories.R | 492 ++-- R/addCohortIntersect.R | 695 +++-- R/addConceptIntersect.R | 1378 +++++------ R/addDeath.R | 360 +-- R/addDemographics.R | 960 ++++---- R/addDemographicsQuery.R | 1630 ++++++------- R/addIntersect.R | 1114 ++++----- R/addObservationPeriodId.R | 286 +- R/addTableIntersect.R | 800 +++--- R/benchmarkPatientProfiles.R | 505 ++-- R/checks.R | 850 +++---- R/filterCohortId.R | 88 R/filterInObservation.R | 98 R/formats.R | 300 +- R/mockPatientProfiles.R | 800 +++--- R/reexports-omopgenerics.R | 46 R/summariseResult.R | 1542 ++++++------- R/utilities.R | 348 +- README.md | 906 +++---- build/vignette.rds |binary inst/WORDLIST | 128 - inst/doc/cohort-intersect.R | 426 +-- inst/doc/cohort-intersect.Rmd | 570 ++-- inst/doc/cohort-intersect.html | 1638 ++++++------- inst/doc/concept-intersect.R | 304 +- inst/doc/concept-intersect.Rmd | 428 +-- inst/doc/concept-intersect.html | 1424 ++++++------ inst/doc/demographics.R | 280 +- inst/doc/demographics.html | 1578 ++++++------- inst/doc/demographics.rmd | 408 +-- inst/doc/summarise.R | 392 +-- inst/doc/summarise.Rmd | 556 ++-- inst/doc/summarise.html | 2868 ++++++++++++------------ inst/doc/table-intersect.R | 254 +- inst/doc/table-intersect.Rmd | 324 +- inst/doc/table-intersect.html | 1224 +++++----- man/PatientProfiles-package.Rd | 80 man/addAge.Rd | 126 - man/addAgeQuery.Rd | 121 - man/addBirthday.Rd |only man/addBirthdayQuery.Rd |only man/addCategories.Rd | 118 - man/addCdmName.Rd | 60 man/addCohortIntersectCount.Rd | 134 - man/addCohortIntersectDate.Rd | 132 - man/addCohortIntersectDays.Rd | 136 - man/addCohortIntersectField.Rd |only man/addCohortIntersectFlag.Rd | 130 - man/addCohortName.Rd | 54 man/addConceptIntersectCount.Rd | 158 - man/addConceptIntersectDate.Rd | 158 - man/addConceptIntersectDays.Rd | 158 - man/addConceptIntersectField.Rd | 188 - man/addConceptIntersectFlag.Rd | 158 - man/addConceptName.Rd | 80 man/addDateOfBirth.Rd | 103 man/addDateOfBirthQuery.Rd | 98 man/addDeathDate.Rd | 96 man/addDeathDays.Rd | 96 man/addDeathFlag.Rd | 96 man/addDemographics.Rd | 213 - man/addDemographicsQuery.Rd | 208 - man/addFutureObservation.Rd | 94 man/addFutureObservationQuery.Rd | 87 man/addInObservation.Rd | 98 man/addInObservationQuery.Rd | 95 man/addObservationPeriodId.Rd | 86 man/addObservationPeriodIdQuery.Rd | 80 man/addPriorObservation.Rd | 94 man/addPriorObservationQuery.Rd | 87 man/addSex.Rd | 70 man/addSexQuery.Rd | 67 man/addTableIntersectCount.Rd | 130 - man/addTableIntersectDate.Rd | 132 - man/addTableIntersectDays.Rd | 132 - man/addTableIntersectField.Rd | 172 - man/addTableIntersectFlag.Rd | 130 - man/availableEstimates.Rd | 64 man/benchmarkPatientProfiles.Rd | 46 man/endDateColumn.Rd | 50 man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/filterCohortId.Rd | 46 man/filterInObservation.Rd | 68 man/mockDisconnect.Rd | 28 man/mockPatientProfiles.Rd | 90 man/reexports.Rd | 34 man/sourceConceptIdColumn.Rd | 50 man/standardConceptIdColumn.Rd | 50 man/startDateColumn.Rd | 50 man/summariseResult.Rd | 170 - man/variableTypes.Rd | 68 tests/manual/test-sqltest.R | 188 - tests/spelling.R | 10 tests/testthat.R | 24 tests/testthat/setup.R | 110 tests/testthat/test-addAttributes.R | 84 tests/testthat/test-addBirthDay.R |only tests/testthat/test-addCategories.R | 346 +- tests/testthat/test-addCohortIntersect.R | 2044 ++++++++--------- tests/testthat/test-addConceptIntersect.R | 862 +++---- tests/testthat/test-addDeath.R | 720 +++--- tests/testthat/test-addDemographics.R | 2935 ++++++++++++------------- tests/testthat/test-addFutureObservation.R | 636 ++--- tests/testthat/test-addInObservation.R | 400 +-- tests/testthat/test-addIntersect.R | 2540 ++++++++++----------- tests/testthat/test-addObservationPeriodId.R | 478 ++-- tests/testthat/test-addPriorObservation.R | 472 ++-- tests/testthat/test-addSex.R | 194 - tests/testthat/test-addTableIntersect.R | 1352 +++++------ tests/testthat/test-benchmarkPatientProfiles.R | 22 tests/testthat/test-checks.R | 552 ++-- tests/testthat/test-class.R | 158 - tests/testthat/test-filterCohortId.R | 54 tests/testthat/test-filterInObservation.R | 166 - tests/testthat/test-format.R | 234 - tests/testthat/test-mockPatientProfiles.R | 12 tests/testthat/test-name.R | 216 - tests/testthat/test-summariseResult.R | 2250 +++++++++---------- tests/testthat/test-utilities.R | 36 vignettes/cohort-intersect.Rmd | 570 ++-- vignettes/concept-intersect.Rmd | 428 +-- vignettes/demographics.rmd | 408 +-- vignettes/summarise.Rmd | 556 ++-- vignettes/table-intersect.Rmd | 324 +- 133 files changed, 25717 insertions(+), 25548 deletions(-)
More information about PatientProfiles at CRAN
Permanent link
Title: Conventional and Fuzzy Data Envelopment Analysis
Description: Set of functions for Data Envelopment Analysis, including classical, fuzzy, cross-efficiency, bootstrapping, and Malmquist models. See: Banker, R.; Charnes, A.; Cooper, W.W. (1984). <doi:10.1287/mnsc.30.9.1078>, Charnes, A.; Cooper, W.W.; Rhodes, E. (1978). <doi:10.1016/0377-2217(78)90138-8> and Charnes, A.; Cooper, W.W.; Rhodes, E. (1981). <doi:10.1287/mnsc.27.6.668>.
Author: Vicente Bolos [aut, cre],
Vicente Coll-Serrano [aut],
Rafael Benitez Suarez [aut]
Maintainer: Vicente Bolos <vicente.bolos@uv.es>
Diff between deaR versions 1.5.3 dated 2026-02-03 and 1.5.4 dated 2026-02-24
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/model_basic.R | 43 +++++++++++++++++++++++++++++++++++-------- man/model_basic.Rd | 3 ++- 4 files changed, 43 insertions(+), 15 deletions(-)
Title: Sound Synthesis and Acoustic Analysis
Description: Performs parametric synthesis of sounds with harmonic and noise
components such as animal vocalizations or human voice. Also offers tools
for audio manipulation and acoustic analysis, including pitch tracking,
spectral analysis, audio segmentation, pitch and formant shifting, etc.
Includes four interactive web apps for synthesizing and annotating audio,
manually correcting pitch contours, and measuring formant frequencies.
Reference: Anikin (2019) <doi:10.3758/s13428-018-1095-7>.
Author: Andrey Anikin [aut, cre]
Maintainer: Andrey Anikin <andrey.anikin@cogsci.se>
Diff between soundgen versions 2.8.0 dated 2025-12-14 and 2.9.0 dated 2026-02-24
soundgen-2.8.0/soundgen/R/zzz.R |only soundgen-2.8.0/soundgen/inst/shiny/pitch_app/www/temp.wav |only soundgen-2.9.0/soundgen/DESCRIPTION | 6 soundgen-2.9.0/soundgen/MD5 | 82 - soundgen-2.9.0/soundgen/NEWS | 10 soundgen-2.9.0/soundgen/R/SSM.R | 334 +++--- soundgen-2.9.0/soundgen/R/analyze.R | 44 soundgen-2.9.0/soundgen/R/analyze_utilities.R | 4 soundgen-2.9.0/soundgen/R/apps.R | 34 soundgen-2.9.0/soundgen/R/compareSounds.R | 4 soundgen-2.9.0/soundgen/R/formants.R | 6 soundgen-2.9.0/soundgen/R/invertModulSpec.R | 4 soundgen-2.9.0/soundgen/R/math.R | 18 soundgen-2.9.0/soundgen/R/phasegram.R | 4 soundgen-2.9.0/soundgen/R/pitch_postprocessing.R | 5 soundgen-2.9.0/soundgen/R/soundgen-package.R |only soundgen-2.9.0/soundgen/R/soundgen.R | 20 soundgen-2.9.0/soundgen/R/spectrogram.R | 9 soundgen-2.9.0/soundgen/R/surprisal.R | 749 +++++++++----- soundgen-2.9.0/soundgen/inst/shiny/annotation_app/ui.R | 2 soundgen-2.9.0/soundgen/inst/shiny/formant_app/server.R | 6 soundgen-2.9.0/soundgen/inst/shiny/formant_app/ui.R | 2 soundgen-2.9.0/soundgen/inst/shiny/pitch_app/server.R | 14 soundgen-2.9.0/soundgen/inst/shiny/pitch_app/ui.R | 2 soundgen-2.9.0/soundgen/man/addFormants.Rd | 4 soundgen-2.9.0/soundgen/man/analyze.Rd | 15 soundgen-2.9.0/soundgen/man/compareSounds.Rd | 4 soundgen-2.9.0/soundgen/man/dot-addFormants.Rd | 4 soundgen-2.9.0/soundgen/man/dot-analyze.Rd | 2 soundgen-2.9.0/soundgen/man/dot-getSurprisal.Rd | 71 - soundgen-2.9.0/soundgen/man/dot-ssm.Rd | 53 soundgen-2.9.0/soundgen/man/filterSoundByMS.Rd | 4 soundgen-2.9.0/soundgen/man/forcePerPath.Rd | 5 soundgen-2.9.0/soundgen/man/getEntropy.Rd | 10 soundgen-2.9.0/soundgen/man/getPrior.Rd | 4 soundgen-2.9.0/soundgen/man/getSurprisal.Rd | 195 ++- soundgen-2.9.0/soundgen/man/getSurprisal_matrix.Rd | 27 soundgen-2.9.0/soundgen/man/getSurprisal_vector.Rd | 28 soundgen-2.9.0/soundgen/man/na.trim.Rd | 4 soundgen-2.9.0/soundgen/man/phasegram.Rd | 4 soundgen-2.9.0/soundgen/man/pitch_app.Rd | 34 soundgen-2.9.0/soundgen/man/soundgen-package.Rd |only soundgen-2.9.0/soundgen/man/soundgen.Rd | 6 soundgen-2.9.0/soundgen/man/ssm.Rd | 95 + 44 files changed, 1222 insertions(+), 706 deletions(-)
Title: The Skew-Normal and Related Distributions Such as the Skew-t and
the SUN
Description: Build and manipulate probability distributions of the skew-normal
family and some related ones, notably the skew-t and the SUN families.
For the skew-normal and the skew-t distributions, statistical methods are
provided for data fitting and model diagnostics, in the univariate and the
multivariate case.
Author: Adelchi Azzalini [aut, cre]
Maintainer: Adelchi Azzalini <adelchi.azzalini@unipd.it>
Diff between sn versions 2.1.2 dated 2026-01-25 and 2.1.3 dated 2026-02-24
DESCRIPTION | 9 +++--- MD5 | 58 +++++++++++++++++++++--------------------- NAMESPACE | 5 ++- R/sn-funct.R | 21 ++++++++++----- R/sn_S4.R | 8 ++--- R/sun.R | 9 +++--- build/partial.rdb |binary build/vignette.rds |binary data/ais.rda |binary data/barolo.rda |binary data/frontier.rda |binary data/wines.rda |binary inst/NEWS.Rd | 18 +++++++++++++ man/coef.selm.Rd | 2 - man/confint.selm.Rd | 11 ++++--- man/dmsn.Rd | 2 - man/dmst.Rd | 3 ++ man/dp2cp.Rd | 2 - man/dsn.Rd | 3 +- man/dst.Rd | 2 - man/fitdistr.grouped-class.Rd | 4 +- man/fitdistr.grouped.Rd | 6 ++-- man/pprodt2.Rd | 12 +++++--- man/predict.selm.Rd | 4 +- man/profile.selm.Rd | 31 +++++++++++++--------- man/residuals.selm.Rd | 7 ++--- man/selm-class.Rd | 43 ++++++++++++++++++------------- man/selm.Rd | 9 ++++-- man/spread.grouped.Rd | 8 ++--- man/summary.selm.Rd | 7 +++-- 30 files changed, 173 insertions(+), 111 deletions(-)
Title: Report Templates and Helper Functions for Applied Epidemiology
Description: A meta-package that loads the complete sitrep ecosystem for
applied epidemiology analysis. This package provides report templates
and automatically loads companion packages, including 'epitabulate' (for
epidemiological tables), 'epidict' (for data dictionaries), 'epikit' (for
epidemiological utilities), and 'apyramid' (for age-sex pyramids).
Simply load 'sitrep' to access all functions from the ecosystem.
Author: Alexander Spina [aut, cre] ,
Zhian N. Kamvar [aut] ,
Dirk Schumacher [aut],
Kate Doyle [aut],
Chris Jarvis [aut],
Lukas Richter [aut],
Paula Blomquist [aut],
Annick Lenglet [ctb],
Neale Batra [ctb],
Applied Epi Incorporated [cph],
Medecins Sans Front [...truncated...]
Maintainer: Alexander Spina <aspina@appliedepi.org>
Diff between sitrep versions 0.4.0 dated 2026-01-20 and 0.4.1 dated 2026-02-24
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 3 +++ build/vignette.rds |binary inst/rmarkdown/templates/cholera_intersectional_outbreak/skeleton/skeleton.Rmd | 2 +- 5 files changed, 11 insertions(+), 8 deletions(-)
Title: Efficiently Read Sequence Data (VCF Format, BCF Format, METAL
Format and BGEN Format) into R
Description: Integrate sequencing data (Variant call format, e.g. VCF or BCF) or meta-analysis results in R. This package can help you (1) read VCF/BCF/BGEN files by chromosomal ranges (e.g. 1:100-200); (2) read 'RareMETAL' summary statistics files; (3) read tables from a 'tabix'-indexed files; (4) annotate VCF/BCF files; (5) create customized workflow based on Makefile.
Author: Xiaowei Zhan [aut, cre],
Dajiang Liu [aut],
Attractive Chaos [cph] . We removed standard IO related functions, e.g. printf,
fprintf ; also changed its un-safe pointer arithmetics.),
Broad Institute / Massachusetts Institute of Technology [cph],
Genom [...truncated...]
Maintainer: Xiaowei Zhan <zhanxw@gmail.com>
This is a re-admission after prior archival of version 9.7 dated 2024-10-02
Diff between seqminer versions 9.7 dated 2024-10-02 and 9.9 dated 2026-02-24
DESCRIPTION | 14 +++++++------- MD5 | 6 +++--- configure | 18 +++++++++--------- tests/testthat/test-vcf.R | 4 ++-- 4 files changed, 21 insertions(+), 21 deletions(-)
Title: qPCR Data Analysis
Description: Tools for qPCR data analysis using Delta Ct and Delta Delta Ct methods, including t-test, Wilcoxon-test, ANOVA models, and publication-ready visualizations. The package supports multiple target, and multiple reference genes, and uses a calculation framework adopted from Ganger et al. (2017) <doi:10.1186/s12859-017-1949-5> and Taylor et al. (2019) <doi:10.1016/j.tibtech.2018.12.002>, covering both the Livak and Pfaffl methods.
Author: Ghader Mirzaghaderi [aut, cre, cph]
Maintainer: Ghader Mirzaghaderi <mirzaghaderi@gmail.com>
Diff between rtpcr versions 2.1.4 dated 2026-02-12 and 2.1.5 dated 2026-02-24
rtpcr-2.1.4/rtpcr/R/plotSingleGene.R |only rtpcr-2.1.4/rtpcr/man/plotSingleGene.Rd |only rtpcr-2.1.5/rtpcr/DESCRIPTION | 10 rtpcr-2.1.5/rtpcr/MD5 | 62 - rtpcr-2.1.5/rtpcr/NAMESPACE | 2 rtpcr-2.1.5/rtpcr/NEWS.md | 11 rtpcr-2.1.5/rtpcr/R/ANOVA_DCt.R | 125 +- rtpcr-2.1.5/rtpcr/R/ANOVA_DDCt.R | 710 ++++++------- rtpcr-2.1.5/rtpcr/R/Means_DDCt.R | 2 rtpcr-2.1.5/rtpcr/R/globalVariables.R | 2 rtpcr-2.1.5/rtpcr/R/plotFactor.R | 19 rtpcr-2.1.5/rtpcr/R/qpcrhlpr.R | 376 ++++++ rtpcr-2.1.5/rtpcr/data/data_repeated_measure_1.rda |binary rtpcr-2.1.5/rtpcr/data/data_repeated_measure_2.rda |binary rtpcr-2.1.5/rtpcr/inst/doc/Manual.R | 21 rtpcr-2.1.5/rtpcr/inst/doc/Manual.Rmd | 47 rtpcr-2.1.5/rtpcr/inst/doc/Manual.html | 309 ++--- rtpcr-2.1.5/rtpcr/inst/extdata/data_repeated_measure_1.csv | 18 rtpcr-2.1.5/rtpcr/inst/extdata/data_repeated_measure_2.csv | 36 rtpcr-2.1.5/rtpcr/inst/shinyapp |only rtpcr-2.1.5/rtpcr/man/ANOVA_DCt.Rd | 34 rtpcr-2.1.5/rtpcr/man/ANOVA_DDCt.Rd | 55 - rtpcr-2.1.5/rtpcr/man/Means_DDCt.Rd | 2 rtpcr-2.1.5/rtpcr/man/figures/dataStructure1.png |binary rtpcr-2.1.5/rtpcr/man/figures/out.png |only rtpcr-2.1.5/rtpcr/man/figures/repeated_measure.png |binary rtpcr-2.1.5/rtpcr/man/figures/shiny_rtpcr.png |only rtpcr-2.1.5/rtpcr/man/plotFactor.Rd | 8 rtpcr-2.1.5/rtpcr/vignettes/Manual.Rmd | 47 29 files changed, 1186 insertions(+), 710 deletions(-)
Title: Distributions Compatible with Automatic Differentiation by
'RTMB'
Description: Extends the functionality of the 'RTMB' <https://kaskr.r-universe.dev/RTMB> package by providing a collection of non-standard probability distributions compatible with automatic differentiation (AD). While 'RTMB' enables flexible and efficient modelling, including random effects, its built-in support is limited to standard distributions. The package adds additional AD-compatible distributions, broadening the range of models that can be implemented and estimated using 'RTMB'. Automatic differentiation and Laplace approximation are described in Kristensen et al. (2016) <doi:10.18637/jss.v070.i05>.
Author: Jan-Ole Fischer [aut, cre]
Maintainer: Jan-Ole Fischer <jan-ole.fischer@mailbox.org>
Diff between RTMBdist versions 1.0.0 dated 2026-01-13 and 1.0.1 dated 2026-02-24
DESCRIPTION | 16 ++++++++-------- MD5 | 26 +++++++++++++------------- R/bccg.R | 2 +- R/bct.R | 4 ++-- R/exgauss.R | 2 +- R/genpois.R | 10 +++++----- R/skewnorm.R | 2 +- R/skewt.R | 2 +- R/truncnorm.R | 2 +- R/trunct.R | 2 +- R/trunct2.R | 2 +- R/wrpcauchy.R | 4 ++-- README.md | 10 +++++----- inst/doc/Examples.html | 8 ++++---- 14 files changed, 46 insertions(+), 46 deletions(-)
Title: Estimation for some Reliability Distributions
Description: Parameters estimation and linear regression models for Reliability
distributions families reviewed by Almalki & Nadarajah (2014)
<doi:10.1016/j.ress.2013.11.010> using Generalized Additive
Models for Location, Scale and Shape, GAMLSS by Rigby & Stasinopoulos
(2005) <doi:10.1111/j.1467-9876.2005.00510.x>.
Author: Freddy Hernandez-Barajas [aut, cre] ,
Olga Usuga [aut] ,
Carmen Patino [aut],
Jaime Mosquera [aut]
Maintainer: Freddy Hernandez-Barajas <fhernanb@unal.edu.co>
Diff between RelDists versions 1.0.0 dated 2022-12-22 and 1.0.1 dated 2026-02-24
RelDists-1.0.0/RelDists/build/partial.rdb |only RelDists-1.0.1/RelDists/DESCRIPTION | 38 - RelDists-1.0.1/RelDists/MD5 | 313 ++++---- RelDists-1.0.1/RelDists/NAMESPACE | 505 +++++++------ RelDists-1.0.1/RelDists/R/AddW.R | 14 RelDists-1.0.1/RelDists/R/BGE.R | 9 RelDists-1.0.1/RelDists/R/BS.R |only RelDists-1.0.1/RelDists/R/BS2.R |only RelDists-1.0.1/RelDists/R/BS3.R |only RelDists-1.0.1/RelDists/R/CJ2.R |only RelDists-1.0.1/RelDists/R/CS2e.R | 6 RelDists-1.0.1/RelDists/R/EEG.R | 8 RelDists-1.0.1/RelDists/R/EGG.R | 10 RelDists-1.0.1/RelDists/R/EMWEx.R | 10 RelDists-1.0.1/RelDists/R/EOFNH.R | 15 RelDists-1.0.1/RelDists/R/EXL.R |only RelDists-1.0.1/RelDists/R/ExW.R | 9 RelDists-1.0.1/RelDists/R/ExWALD.R |only RelDists-1.0.1/RelDists/R/FWE.R | 2 RelDists-1.0.1/RelDists/R/GGD.R | 8 RelDists-1.0.1/RelDists/R/GIW.R | 9 RelDists-1.0.1/RelDists/R/GammaW.R | 7 RelDists-1.0.1/RelDists/R/IW.R | 11 RelDists-1.0.1/RelDists/R/KumIW.R | 10 RelDists-1.0.1/RelDists/R/LIN.R | 9 RelDists-1.0.1/RelDists/R/LW.R | 10 RelDists-1.0.1/RelDists/R/MOEIW.R | 5 RelDists-1.0.1/RelDists/R/MOEW.R | 9 RelDists-1.0.1/RelDists/R/MOK.R | 6 RelDists-1.0.1/RelDists/R/MW.R | 10 RelDists-1.0.1/RelDists/R/NEE.R |only RelDists-1.0.1/RelDists/R/OW.R | 5 RelDists-1.0.1/RelDists/R/PL.R | 10 RelDists-1.0.1/RelDists/R/QXGP.R | 6 RelDists-1.0.1/RelDists/R/RW.R | 8 RelDists-1.0.1/RelDists/R/SZMW.R | 9 RelDists-1.0.1/RelDists/R/WALD.R |only RelDists-1.0.1/RelDists/R/WG.R | 4 RelDists-1.0.1/RelDists/R/WGEE.R | 3 RelDists-1.0.1/RelDists/R/WP.R | 11 RelDists-1.0.1/RelDists/R/dAddW.R | 17 RelDists-1.0.1/RelDists/R/dBGE.R | 13 RelDists-1.0.1/RelDists/R/dBS.R |only RelDists-1.0.1/RelDists/R/dBS2.R |only RelDists-1.0.1/RelDists/R/dBS3.R |only RelDists-1.0.1/RelDists/R/dCJ2.R |only RelDists-1.0.1/RelDists/R/dCS2e.R | 10 RelDists-1.0.1/RelDists/R/dEEG.R | 13 RelDists-1.0.1/RelDists/R/dEGG.R | 18 RelDists-1.0.1/RelDists/R/dEMWEx.R | 18 RelDists-1.0.1/RelDists/R/dEOFNH.R | 38 - RelDists-1.0.1/RelDists/R/dEW.R | 3 RelDists-1.0.1/RelDists/R/dEXL.R |only RelDists-1.0.1/RelDists/R/dExW.R | 17 RelDists-1.0.1/RelDists/R/dExWALD.R |only RelDists-1.0.1/RelDists/R/dFWE.R | 7 RelDists-1.0.1/RelDists/R/dGGD.R | 11 RelDists-1.0.1/RelDists/R/dGIW.R | 22 RelDists-1.0.1/RelDists/R/dGMW.R | 4 RelDists-1.0.1/RelDists/R/dGWF.R |only RelDists-1.0.1/RelDists/R/dGammaW.R | 12 RelDists-1.0.1/RelDists/R/dIW.R | 17 RelDists-1.0.1/RelDists/R/dKumIW.R | 15 RelDists-1.0.1/RelDists/R/dLIN.R | 15 RelDists-1.0.1/RelDists/R/dLW.R | 16 RelDists-1.0.1/RelDists/R/dMOEIW.R | 13 RelDists-1.0.1/RelDists/R/dMOEW.R | 17 RelDists-1.0.1/RelDists/R/dMOK.R | 12 RelDists-1.0.1/RelDists/R/dMW.R | 10 RelDists-1.0.1/RelDists/R/dNEE.R |only RelDists-1.0.1/RelDists/R/dOW.R | 133 ++- RelDists-1.0.1/RelDists/R/dPL.R | 18 RelDists-1.0.1/RelDists/R/dQXGP.R | 13 RelDists-1.0.1/RelDists/R/dRNMW.R |only RelDists-1.0.1/RelDists/R/dRW.R | 18 RelDists-1.0.1/RelDists/R/dSZMW.R | 19 RelDists-1.0.1/RelDists/R/dWALD.R |only RelDists-1.0.1/RelDists/R/dWG.R | 10 RelDists-1.0.1/RelDists/R/dWGEE.R | 13 RelDists-1.0.1/RelDists/R/dWP.R | 17 RelDists-1.0.1/RelDists/README.md | 24 RelDists-1.0.1/RelDists/build/vignette.rds |binary RelDists-1.0.1/RelDists/inst/REFERENCES.bib | 9 RelDists-1.0.1/RelDists/inst/doc/FWE_distribution.R | 6 RelDists-1.0.1/RelDists/inst/doc/FWE_distribution.Rmd | 6 RelDists-1.0.1/RelDists/inst/doc/FWE_distribution.html | 47 - RelDists-1.0.1/RelDists/inst/doc/OW_distribution.R | 16 RelDists-1.0.1/RelDists/inst/doc/OW_distribution.html | 617 ++++++++--------- RelDists-1.0.1/RelDists/man/AddW.Rd | 180 ++-- RelDists-1.0.1/RelDists/man/BGE.Rd | 161 ++-- RelDists-1.0.1/RelDists/man/BS.Rd |only RelDists-1.0.1/RelDists/man/BS2.Rd |only RelDists-1.0.1/RelDists/man/BS3.Rd |only RelDists-1.0.1/RelDists/man/CJ2.Rd |only RelDists-1.0.1/RelDists/man/CS2e.Rd | 149 ++-- RelDists-1.0.1/RelDists/man/EEG.Rd | 142 ++- RelDists-1.0.1/RelDists/man/EGG.Rd | 184 ++--- RelDists-1.0.1/RelDists/man/EMWEx.Rd | 168 ++-- RelDists-1.0.1/RelDists/man/EOFNH.Rd | 158 ++-- RelDists-1.0.1/RelDists/man/EW.Rd | 148 ++-- RelDists-1.0.1/RelDists/man/EXL.Rd |only RelDists-1.0.1/RelDists/man/ExW.Rd | 154 ++-- RelDists-1.0.1/RelDists/man/ExWALD.Rd |only RelDists-1.0.1/RelDists/man/FWE.Rd | 2 RelDists-1.0.1/RelDists/man/GGD.Rd | 149 ++-- RelDists-1.0.1/RelDists/man/GIW.Rd | 152 ++-- RelDists-1.0.1/RelDists/man/GMW.Rd | 150 ++-- RelDists-1.0.1/RelDists/man/GammaW.Rd | 153 ++-- RelDists-1.0.1/RelDists/man/IW.Rd | 144 ++- RelDists-1.0.1/RelDists/man/KumIW.Rd | 154 ++-- RelDists-1.0.1/RelDists/man/LIN.Rd | 124 +-- RelDists-1.0.1/RelDists/man/LW.Rd | 143 ++- RelDists-1.0.1/RelDists/man/MOEIW.Rd | 157 ++-- RelDists-1.0.1/RelDists/man/MOEW.Rd | 154 ++-- RelDists-1.0.1/RelDists/man/MOK.Rd | 158 ++-- RelDists-1.0.1/RelDists/man/MW.Rd | 154 ++-- RelDists-1.0.1/RelDists/man/NEE.Rd |only RelDists-1.0.1/RelDists/man/OW.Rd | 25 RelDists-1.0.1/RelDists/man/PL.Rd | 145 ++- RelDists-1.0.1/RelDists/man/QXGP.Rd | 159 ++-- RelDists-1.0.1/RelDists/man/RW.Rd | 145 ++- RelDists-1.0.1/RelDists/man/SZMW.Rd | 153 ++-- RelDists-1.0.1/RelDists/man/WALD.Rd |only RelDists-1.0.1/RelDists/man/WG.Rd | 150 ++-- RelDists-1.0.1/RelDists/man/WGEE.Rd | 147 ++-- RelDists-1.0.1/RelDists/man/WP.Rd | 161 ++-- RelDists-1.0.1/RelDists/man/dAddW.Rd | 205 ++--- RelDists-1.0.1/RelDists/man/dBGE.Rd | 206 ++--- RelDists-1.0.1/RelDists/man/dBS.Rd |only RelDists-1.0.1/RelDists/man/dBS2.Rd |only RelDists-1.0.1/RelDists/man/dBS3.Rd |only RelDists-1.0.1/RelDists/man/dCJ2.Rd |only RelDists-1.0.1/RelDists/man/dCS2e.Rd | 195 ++--- RelDists-1.0.1/RelDists/man/dEEG.Rd | 200 ++--- RelDists-1.0.1/RelDists/man/dEGG.Rd | 205 ++--- RelDists-1.0.1/RelDists/man/dEMWEx.Rd | 210 +++-- RelDists-1.0.1/RelDists/man/dEOFNH.Rd | 199 ++--- RelDists-1.0.1/RelDists/man/dEW.Rd | 177 ++-- RelDists-1.0.1/RelDists/man/dEXL.Rd |only RelDists-1.0.1/RelDists/man/dExW.Rd | 200 ++--- RelDists-1.0.1/RelDists/man/dExWALD.Rd |only RelDists-1.0.1/RelDists/man/dFWE.Rd | 8 RelDists-1.0.1/RelDists/man/dGGD.Rd | 194 ++--- RelDists-1.0.1/RelDists/man/dGIW.Rd | 202 ++--- RelDists-1.0.1/RelDists/man/dGMW.Rd | 187 ++--- RelDists-1.0.1/RelDists/man/dGWF.Rd |only RelDists-1.0.1/RelDists/man/dGammaW.Rd | 201 ++--- RelDists-1.0.1/RelDists/man/dIW.Rd | 194 ++--- RelDists-1.0.1/RelDists/man/dKumIW.Rd | 204 ++--- RelDists-1.0.1/RelDists/man/dLIN.Rd | 174 ++-- RelDists-1.0.1/RelDists/man/dLW.Rd | 193 ++--- RelDists-1.0.1/RelDists/man/dMOEIW.Rd | 194 ++--- RelDists-1.0.1/RelDists/man/dMOEW.Rd | 200 ++--- RelDists-1.0.1/RelDists/man/dMOK.Rd | 206 ++--- RelDists-1.0.1/RelDists/man/dMW.Rd | 199 ++--- RelDists-1.0.1/RelDists/man/dNEE.Rd |only RelDists-1.0.1/RelDists/man/dOW.Rd | 10 RelDists-1.0.1/RelDists/man/dPL.Rd | 195 ++--- RelDists-1.0.1/RelDists/man/dQXGP.Rd | 205 ++--- RelDists-1.0.1/RelDists/man/dRNMW.Rd |only RelDists-1.0.1/RelDists/man/dRW.Rd | 193 ++--- RelDists-1.0.1/RelDists/man/dSZMW.Rd | 196 ++--- RelDists-1.0.1/RelDists/man/dWALD.Rd |only RelDists-1.0.1/RelDists/man/dWG.Rd | 199 ++--- RelDists-1.0.1/RelDists/man/dWGEE.Rd | 197 ++--- RelDists-1.0.1/RelDists/man/dWP.Rd | 196 ++--- RelDists-1.0.1/RelDists/man/den_exw.Rd |only RelDists-1.0.1/RelDists/man/equipment.Rd | 40 - RelDists-1.0.1/RelDists/man/estim_mu_sigma_CJ2.Rd |only RelDists-1.0.1/RelDists/man/estim_mu_sigma_NEE.Rd |only RelDists-1.0.1/RelDists/man/exwstpt.Rd |only RelDists-1.0.1/RelDists/man/fitexw.Rd |only RelDists-1.0.1/RelDists/man/initValuesOW.Rd | 174 ++-- RelDists-1.0.1/RelDists/man/logLik_CJ2.Rd |only RelDists-1.0.1/RelDists/man/logLik_NEE.Rd |only RelDists-1.0.1/RelDists/man/mice.Rd | 42 - RelDists-1.0.1/RelDists/man/negllexw.Rd |only RelDists-1.0.1/RelDists/man/pwald.Rd |only RelDists-1.0.1/RelDists/man/rew.Rd |only RelDists-1.0.1/RelDists/man/uandv.Rd |only RelDists-1.0.1/RelDists/man/wald_start.Rd |only RelDists-1.0.1/RelDists/vignettes/FWE_distribution.Rmd | 6 182 files changed, 6565 insertions(+), 5937 deletions(-)
Title: 'DuckDB' High Throughput Sequencing File Formats Reader
Extension
Description: Bundles the 'duckhts' 'DuckDB' extension for reading High Throughput
Sequencing file formats with 'DuckDB'. The 'DuckDB' C extension API
<https://duckdb.org/docs/stable/clients/c/api> and its 'htslib' dependency are
compiled from vendored sources during package installation. James K Bonfield and co-authors (2021) <doi:10.1093/gigascience/giab007>.
Author: Sounkou Mahamane Toure [aut, cre],
James K Bonfield, John Marshall,Petr Danecek ,Heng Li , Valeriu Ohan,
Andrew Whitwham,Thomas Keane , Robert M Davies [ctb] ,
DuckDB C Extension API Authors [ctb]
Maintainer: Sounkou Mahamane Toure <sounkoutoure@gmail.com>
Diff between Rduckhts versions 0.1.2-0.1.4 dated 2026-02-23 and 0.1.3-0.0.2 dated 2026-02-24
DESCRIPTION | 6 MD5 | 43 ++- NAMESPACE | 5 NEWS.md | 18 + R/bootstrap.R | 2 R/duckhts.R | 170 ++++++++++++++ configure | 37 ++- configure.win | 52 ++++ inst/duckhts_extension/bam_reader.c | 41 ++- inst/duckhts_extension/bcf_reader.c | 365 ++++++++++++++++++++++++++----- inst/duckhts_extension/duckhts.c | 33 ++ inst/duckhts_extension/hts_meta_reader.c |only inst/duckhts_extension/seq_reader.c | 254 +++++++++++++++++++++ inst/duckhts_extension/tabix_reader.c | 226 +++++++++++++++---- inst/tinytest/test_basic.R | 23 + inst/tinytest/test_integration.R | 77 ++++++ inst/tinytest/test_type_mappings.R |only man/rduckhts_bam.Rd | 3 man/rduckhts_bcf.Rd | 3 man/rduckhts_fasta.Rd | 13 + man/rduckhts_fasta_index.Rd |only man/rduckhts_hts_header.Rd |only man/rduckhts_hts_index.Rd |only man/rduckhts_hts_index_raw.Rd |only man/rduckhts_hts_index_spans.Rd |only man/rduckhts_tabix.Rd | 3 26 files changed, 1222 insertions(+), 152 deletions(-)
Title: Taxonomic Backbone and Name Validation Tools for Mammals of Peru
Description: Provides a curated taxonomic backbone of mammal species recorded in Peru,
based on the checklist published by Pacheco and collaborators (2021)
<doi:10.15381/rpb.v28i4.21019>. The package includes standardized species
data, occurrence records by ecological regions, endemic status, and tools
for validating and matching scientific names through exact and approximate
string procedures. It is designed as a lightweight and reliable reference
for ecological, environmental, biogeographical, and conservation workflows
that require verified species information for Peruvian mammals.
Author: Paul E. Santos Andrade [aut, cre] ,
Fiorella N. Gonzales Guillen [ctb]
Maintainer: Paul E. Santos Andrade <paulefrens@gmail.com>
This is a re-admission after prior archival of version 0.0.0.1 dated 2026-01-06
Diff between perumammals versions 0.0.0.1 dated 2026-01-06 and 0.0.0.2 dated 2026-02-24
perumammals-0.0.0.1/perumammals/man/dot-onAttach.Rd |only perumammals-0.0.0.1/perumammals/man/dot-onLoad.Rd |only perumammals-0.0.0.1/perumammals/man/show_progress.Rd |only perumammals-0.0.0.2/perumammals/DESCRIPTION | 23 - perumammals-0.0.0.2/perumammals/MD5 | 17 - perumammals-0.0.0.2/perumammals/R/internal.R | 133 +++++----- perumammals-0.0.0.2/perumammals/README.md | 31 +- perumammals-0.0.0.2/perumammals/inst/doc/art-logo.html | 6 perumammals-0.0.0.2/perumammals/inst/doc/getting_started.html | 4 perumammals-0.0.0.2/perumammals/inst/doc/vignette.html | 4 perumammals-0.0.0.2/perumammals/man/figures/logo_perumammals.png |binary 11 files changed, 114 insertions(+), 104 deletions(-)
Title: A Library for using 'Pathling'
Description: R API for 'Pathling', a tool for querying and transforming electronic health record data that is represented using the 'Fast Healthcare Interoperability Resources' (FHIR) standard - see <https://pathling.csiro.au/docs>.
Author: Australian e-Health Research Centre, CSIRO [cph, cre],
Piotr Szul [aut],
John Grimes [aut]
Maintainer: "Australian e-Health Research Centre, CSIRO" <pathling@csiro.au>
Diff between pathling versions 9.3.0 dated 2026-02-15 and 9.4.0 dated 2026-02-24
DESCRIPTION | 8 +- MD5 | 15 ++--- NAMESPACE | 1 R/context.R | 100 +++++++++++++++++++++++++++++++++---- man/pathling_evaluate_fhirpath.Rd |only man/pathling_fhirpath_to_column.Rd | 9 +-- man/pathling_filter.Rd | 1 man/pathling_search_to_column.Rd | 10 +-- man/pathling_with_column.Rd | 1 9 files changed, 114 insertions(+), 31 deletions(-)
Title: Integrative Subtype Generation
Description: Multi-data type subtyping, which is data type agnostic and accepts missing data. Subtyping is performed using intermediary assessments created with autoencoders and similarity calculations. See Fox et al. (2024) <doi:10.1016/j.crmeth.2024.100884> for details.
Author: Mao Tian [cre],
Paul Boutros [aut],
Natalie Fox [aut],
Dan Knight [ctb]
Maintainer: Mao Tian <mtian@sbpdiscovery.org>
Diff between iSubGen versions 1.0.4 dated 2026-01-24 and 1.0.5 dated 2026-02-24
DESCRIPTION | 9 +++++---- MD5 | 6 +++--- inst/doc/iSubGenGuide.pdf |binary man/write.scaling.factors.Rd | 5 +++-- 4 files changed, 11 insertions(+), 9 deletions(-)
Title: A Compilation of Applicability Domain Methods
Description: A modeling package compiling applicability domain methods in
R. It combines different methods to measure the amount of
extrapolation new samples can have from the training set. See
<doi:10.4018/IJQSPR.2016010102> for an overview of applicability
domains.
Author: Marly Gotti [aut, cre],
Max Kuhn [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Marly Gotti <marlygotti@gmail.com>
This is a re-admission after prior archival of version 0.1.1 dated 2024-04-24
Diff between applicable versions 0.1.1 dated 2024-04-24 and 0.2.1 dated 2026-02-24
applicable-0.1.1/applicable/R/0.R |only applicable-0.2.1/applicable/DESCRIPTION | 24 +-- applicable-0.2.1/applicable/LICENSE | 4 applicable-0.2.1/applicable/MD5 | 69 ++++------ applicable-0.2.1/applicable/NAMESPACE | 10 - applicable-0.2.1/applicable/R/applicable-package.R | 42 +++++- applicable-0.2.1/applicable/R/data.R | 8 - applicable-0.2.1/applicable/R/hat_values-fit.R | 4 applicable-0.2.1/applicable/R/helpers.R | 2 applicable-0.2.1/applicable/R/isolation-fit.R | 6 applicable-0.2.1/applicable/R/isolation-score.R | 4 applicable-0.2.1/applicable/R/pca-fit.R | 8 - applicable-0.2.1/applicable/R/pca-score.R | 12 - applicable-0.2.1/applicable/R/plot.R | 14 +- applicable-0.2.1/applicable/R/print.R | 2 applicable-0.2.1/applicable/R/similarity.R | 10 - applicable-0.2.1/applicable/README.md | 27 ++- applicable-0.2.1/applicable/build/partial.rdb |binary applicable-0.2.1/applicable/inst/WORDLIST | 22 +-- applicable-0.2.1/applicable/man/ames_new.Rd | 6 applicable-0.2.1/applicable/man/apd_isolation.Rd | 6 applicable-0.2.1/applicable/man/applicable-package.Rd | 6 applicable-0.2.1/applicable/man/figures/logo.png |binary applicable-0.2.1/applicable/man/okc_binary.Rd | 2 applicable-0.2.1/applicable/man/print.apd_similarity.Rd | 2 applicable-0.2.1/applicable/man/score.apd_isolation.Rd | 6 applicable-0.2.1/applicable/tests/testthat/_snaps/hat_values-score.md | 2 applicable-0.2.1/applicable/tests/testthat/_snaps/pca-score.md | 2 applicable-0.2.1/applicable/tests/testthat/test-hat_values-fit.R | 10 - applicable-0.2.1/applicable/tests/testthat/test-hat_values-score.R | 16 +- applicable-0.2.1/applicable/tests/testthat/test-isolation-fit.R | 28 ++-- applicable-0.2.1/applicable/tests/testthat/test-isolation-score.R | 9 - applicable-0.2.1/applicable/tests/testthat/test-misc.R | 3 applicable-0.2.1/applicable/tests/testthat/test-pca-score.R | 36 +++-- applicable-0.2.1/applicable/tests/testthat/test-plot.R | 45 ++++-- applicable-0.2.1/applicable/tests/testthat/test-similarity.R | 26 ++- 36 files changed, 277 insertions(+), 196 deletions(-)
Title: Excel Connector for R
Description: Provides comprehensive functionality to read, write and format Excel data.
Author: Mirai Solutions GmbH [aut],
Martin Studer [cre] ,
The Apache Software Foundation [ctb, cph] ,
Graph Builder [ctb, cph] ,
Brett Woolridge [ctb, cph]
Maintainer: Martin Studer <martin.studer@mirai-solutions.com>
Diff between XLConnect versions 1.2.2 dated 2025-05-26 and 1.3.0 dated 2026-02-24
XLConnect-1.2.2/XLConnect/inst/java/XLConnect-3.1.1.jar |only XLConnect-1.2.2/XLConnect/inst/unitTests |only XLConnect-1.2.2/XLConnect/tests/run_tests.R |only XLConnect-1.3.0/XLConnect/DESCRIPTION | 9 XLConnect-1.3.0/XLConnect/MD5 | 480 +++++----- XLConnect-1.3.0/XLConnect/NEWS | 4 XLConnect-1.3.0/XLConnect/R/J.R | 2 XLConnect-1.3.0/XLConnect/R/XLConnectSettings.R | 2 XLConnect-1.3.0/XLConnect/R/aref.R | 2 XLConnect-1.3.0/XLConnect/R/aref2idx.R | 2 XLConnect-1.3.0/XLConnect/R/cellstyle.R | 2 XLConnect-1.3.0/XLConnect/R/cellstyle.operators.R | 2 XLConnect-1.3.0/XLConnect/R/cellstyle.setBorder.R | 2 XLConnect-1.3.0/XLConnect/R/cellstyle.setDataFormat.R | 2 XLConnect-1.3.0/XLConnect/R/cellstyle.setFillBackgroundColor.R | 2 XLConnect-1.3.0/XLConnect/R/cellstyle.setFillForegroundColor.R | 2 XLConnect-1.3.0/XLConnect/R/cellstyle.setFillPattern.R | 2 XLConnect-1.3.0/XLConnect/R/cellstyle.setWrapText.R | 2 XLConnect-1.3.0/XLConnect/R/checkSystemPackage.R | 2 XLConnect-1.3.0/XLConnect/R/classToXlcType.R | 2 XLConnect-1.3.0/XLConnect/R/col2idx.R | 2 XLConnect-1.3.0/XLConnect/R/constants.R | 2 XLConnect-1.3.0/XLConnect/R/cref2idx.R | 2 XLConnect-1.3.0/XLConnect/R/dataframeFromJava.R | 2 XLConnect-1.3.0/XLConnect/R/dataframeToJava.R | 2 XLConnect-1.3.0/XLConnect/R/extractRownames.R | 2 XLConnect-1.3.0/XLConnect/R/extractSheetName.R | 2 XLConnect-1.3.0/XLConnect/R/getColSubset.R | 2 XLConnect-1.3.0/XLConnect/R/idx2aref.R | 2 XLConnect-1.3.0/XLConnect/R/idx2col.R | 2 XLConnect-1.3.0/XLConnect/R/idx2cref.R | 2 XLConnect-1.3.0/XLConnect/R/includeRownames.R | 2 XLConnect-1.3.0/XLConnect/R/jTryCatch.R | 2 XLConnect-1.3.0/XLConnect/R/jseq.R | 2 XLConnect-1.3.0/XLConnect/R/jsle.R | 2 XLConnect-1.3.0/XLConnect/R/loadWorkbook.R | 2 XLConnect-1.3.0/XLConnect/R/mirai.R | 2 XLConnect-1.3.0/XLConnect/R/normalizeDataframe.R | 51 - XLConnect-1.3.0/XLConnect/R/onAttach.R | 2 XLConnect-1.3.0/XLConnect/R/onLoad.R | 45 XLConnect-1.3.0/XLConnect/R/readNamedRegionFromFile.R | 2 XLConnect-1.3.0/XLConnect/R/readWorksheetFromFile.R | 2 XLConnect-1.3.0/XLConnect/R/rg2idx.R | 2 XLConnect-1.3.0/XLConnect/R/seqle.R | 2 XLConnect-1.3.0/XLConnect/R/with.workbook.R | 2 XLConnect-1.3.0/XLConnect/R/withAttributesFromJava.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.addImage.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.appendNamedRegion.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.appendWorksheet.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.clearNamedRegion.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.clearRange.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.clearRangeFromReference.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.clearSheet.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.cloneSheet.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.createCellStyle.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.createFreezePane.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.createName.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.createSheet.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.createSplitPane.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.existsCellStyle.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.existsName.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.existsSheet.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.getActiveSheetIndex.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.getActiveSheetName.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.getBoundingBox.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.getCellFormula.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.getCellStyle.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.getCellStyleForType.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.getDefinedNames.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.getForceFormulaRecalculation.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.getLastColumn.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.getLastRow.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.getOrCreateCellStyle.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.getReferenceCoordinates.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.getReferenceCoordinatesForName.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.getReferenceCoordinatesForTable.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.getReferenceFormula.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.getSheetPos.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.getSheets.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.getTables.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.hideSheet.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.isSheetHidden.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.isSheetVeryHidden.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.isSheetVisible.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.mergeCells.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.onErrorCell.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.operators.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.print.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.readNamedRegion.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.readTable.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.readWorksheet.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.removeName.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.removePane.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.removeSheet.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.renameSheet.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.saveWorkbook.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.setActiveSheet.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.setAutoFilter.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.setCellFormula.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.setCellStyle.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.setCellStyleForType.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.setColumnWidth.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.setDataFormatForType.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.setForceFormulaRecalculation.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.setHyperlink.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.setMissingValue.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.setRowHeight.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.setSheetColor.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.setSheetPos.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.setStyleAction.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.setStyleNamePrefix.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.show.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.summary.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.unhideSheet.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.unmergeCells.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.writeNamedRegion.R | 2 XLConnect-1.3.0/XLConnect/R/workbook.writeWorksheet.R | 2 XLConnect-1.3.0/XLConnect/R/wrapList.R | 2 XLConnect-1.3.0/XLConnect/R/writeNamedRegionToFile.R | 2 XLConnect-1.3.0/XLConnect/R/writeWorksheetToFile.R | 2 XLConnect-1.3.0/XLConnect/R/xlcCall.R | 2 XLConnect-1.3.0/XLConnect/R/xlcDump.R | 2 XLConnect-1.3.0/XLConnect/R/xlcEdit.R | 2 XLConnect-1.3.0/XLConnect/R/xlcEnsureDependenciesFor.R | 2 XLConnect-1.3.0/XLConnect/R/xlcFreeMemory.R | 2 XLConnect-1.3.0/XLConnect/R/xlcMemoryReport.R | 2 XLConnect-1.3.0/XLConnect/R/xlcRestore.R | 2 XLConnect-1.3.0/XLConnect/README.md | 24 XLConnect-1.3.0/XLConnect/demo/addImage.R | 2 XLConnect-1.3.0/XLConnect/demo/cellsize.R | 2 XLConnect-1.3.0/XLConnect/demo/cellstyles1.R | 2 XLConnect-1.3.0/XLConnect/demo/cellstyles2.R | 2 XLConnect-1.3.0/XLConnect/demo/cellstyles3.R | 2 XLConnect-1.3.0/XLConnect/demo/dataformat.R | 2 XLConnect-1.3.0/XLConnect/demo/hideSheets.R | 2 XLConnect-1.3.0/XLConnect/demo/readNamedRegion.R | 2 XLConnect-1.3.0/XLConnect/demo/readWorksheet.R | 2 XLConnect-1.3.0/XLConnect/demo/summary.R | 2 XLConnect-1.3.0/XLConnect/demo/withWorkbook.R | 2 XLConnect-1.3.0/XLConnect/demo/writeLargeData.R | 2 XLConnect-1.3.0/XLConnect/demo/writeNamedRegion.R | 2 XLConnect-1.3.0/XLConnect/demo/writeWorksheet.R | 2 XLConnect-1.3.0/XLConnect/inst/COPYRIGHTS | 2 XLConnect-1.3.0/XLConnect/inst/doc/XLConnect.pdf |binary XLConnect-1.3.0/XLConnect/inst/doc/XLConnectImpatient.pdf |binary XLConnect-1.3.0/XLConnect/inst/java/XLConnect-3.1.2.jar |only XLConnect-1.3.0/XLConnect/tests/test-all.R |only XLConnect-1.3.0/XLConnect/tests/testthat |only 149 files changed, 482 insertions(+), 401 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-31 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-10-15 0.7
2015-12-03 0.6.5
2015-04-20 0.6.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-31 1.0.0
Title: Simple Features for R
Description: Support for simple feature access, a standardized way to
encode and analyze spatial vector data. Binds to 'GDAL'
<doi:10.5281/zenodo.5884351> for reading and writing data, to 'GEOS'
<doi:10.5281/zenodo.11396894> for geometrical operations,
and to 'PROJ' <doi:10.5281/zenodo.5884394> for projection
conversions and datum transformations. Uses by default the 's2'
package for geometry operations on geodetic (long/lat degree)
coordinates.
Author: Edzer Pebesma [aut, cre] ,
Roger Bivand [ctb] ,
Etienne Racine [ctb],
Michael Sumner [ctb],
Ian Cook [ctb],
Tim Keitt [ctb],
Robin Lovelace [ctb],
Hadley Wickham [ctb],
Jeroen Ooms [ctb] ,
Kirill Mueller [ctb],
Thomas Lin Pedersen [ctb],
Dan Baston [c [...truncated...]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sf versions 1.0-24 dated 2026-01-12 and 1.1-0 dated 2026-02-24
sf-1.0-24/sf/man/vctrs.Rd |only sf-1.1-0/sf/DESCRIPTION | 6 sf-1.1-0/sf/MD5 | 87 +- sf-1.1-0/sf/NAMESPACE | 8 sf-1.1-0/sf/NEWS.md | 14 sf-1.1-0/sf/R/RcppExports.R | 4 sf-1.1-0/sf/R/agr.R | 11 sf-1.1-0/sf/R/cast_sfc.R | 6 sf-1.1-0/sf/R/plot.R | 4 sf-1.1-0/sf/R/sample.R | 2 sf-1.1-0/sf/R/sfc.R | 46 + sf-1.1-0/sf/R/stars.R | 9 sf-1.1-0/sf/R/tidyverse-vctrs.R | 323 +++++++-- sf-1.1-0/sf/R/tidyverse.R | 21 sf-1.1-0/sf/R/wkt.R | 2 sf-1.1-0/sf/configure | 600 ++++++++---------- sf-1.1-0/sf/configure.ac | 8 sf-1.1-0/sf/inst/doc/sf1.Rmd | 4 sf-1.1-0/sf/inst/doc/sf1.html | 23 sf-1.1-0/sf/inst/doc/sf2.html | 6 sf-1.1-0/sf/inst/doc/sf4.html | 12 sf-1.1-0/sf/inst/doc/sf6.html | 2 sf-1.1-0/sf/inst/doc/sf7.html | 10 sf-1.1-0/sf/inst/docker/gdal/Dockerfile | 26 sf-1.1-0/sf/inst/docker/ghcr |only sf-1.1-0/sf/inst/docker/parquet/Dockerfile | 39 - sf-1.1-0/sf/man/gdal_compressors.Rd |only sf-1.1-0/sf/man/sfc.Rd | 7 sf-1.1-0/sf/man/st_as_text.Rd | 2 sf-1.1-0/sf/src/RcppExports.cpp | 14 sf-1.1-0/sf/src/bbox.h | 3 sf-1.1-0/sf/src/gdal.cpp | 31 sf-1.1-0/sf/src/gdal.h | 5 sf-1.1-0/sf/src/gdal_read.h | 4 sf-1.1-0/sf/src/gdal_sf_pkg.h | 6 sf-1.1-0/sf/src/hex.h | 3 sf-1.1-0/sf/src/stars.cpp | 2 sf-1.1-0/sf/src/wkb.h | 3 sf-1.1-0/sf/src/zm_range.h | 3 sf-1.1-0/sf/tests/sfc.Rout.save | 14 sf-1.1-0/sf/tests/stars.Rout.save | 2 sf-1.1-0/sf/tests/testthat/test-gdal.R | 2 sf-1.1-0/sf/tests/testthat/test-postgis_RPostgreSQL.R | 1 sf-1.1-0/sf/tests/testthat/test-tidyverse-vctrs.R | 351 +++++++++- sf-1.1-0/sf/tests/testthat/test-write.R | 4 sf-1.1-0/sf/vignettes/sf1.Rmd | 4 46 files changed, 1118 insertions(+), 616 deletions(-)
Title: Visualization and Analysis of Nominal Variable Distributions
Description: Provides tools for visualizing and analyzing the shape of discrete nominal frequency distributions. The package introduces centered frequency plots, in which nominal categories are ordered from the most frequent category at the center toward less frequent categories on both sides, facilitating the detection of distributional patterns such as uniformity, dominance, symmetry, skewness, and long-tail behavior. In addition, the package supports Pareto charts for the study of dominance and cumulative frequency structure in nominal data. The package is designed for exploratory data analysis and statistical teaching, offering visualizations that emphasize distributional form rather than arbitrary category ordering.
Author: Norberto Asensio [aut, cre]
Maintainer: Norberto Asensio <norberto.asensio@ehu.eus>
Diff between nomiShape versions 1.0.0 dated 2026-02-03 and 1.0.1 dated 2026-02-24
DESCRIPTION | 6 MD5 | 32 ++-- NEWS.md | 9 + R/categories4.R |only R/shape_aic.R | 100 ++++++++------ R/sysdata.rda |binary R/ufo.R |only README.md | 19 ++ data/categories4.rda |only data/ufo.rda |only inst/doc/nominal_distribution_shapes.R | 20 ++ inst/doc/nominal_distribution_shapes.Rmd | 25 +++ inst/doc/nominal_distribution_shapes.html | 213 ++++++++++++++++-------------- inst/doc/shape_aic.R | 34 ---- inst/doc/shape_aic.Rmd | 51 ------- inst/doc/shape_aic.html | 64 --------- man/categories4.Rd |only man/ufo.Rd |only vignettes/nominal_distribution_shapes.Rmd | 25 +++ vignettes/shape_aic.Rmd | 51 ------- 20 files changed, 299 insertions(+), 350 deletions(-)
Title: Parsing Glycan Structure Text Representations
Description: Provides functions to parse glycan structure text representations
into 'glyrepr' glycan structures. Currently, it supports StrucGP-style,
pGlyco-style, IUPAC-condensed, IUPAC-extended, IUPAC-short, WURCS,
Linear Code, and GlycoCT format. It also provides an automatic parser
to detect the format and parse the structure string.
Author: Bin Fu [aut, cre, cph]
Maintainer: Bin Fu <23110220018@m.fudan.edu.cn>
Diff between glyparse versions 0.5.5 dated 2026-02-03 and 0.5.6 dated 2026-02-24
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 7 +++++++ R/parse-iupac-extended.R | 33 ++++++++++++++++++++++++++++----- R/parse-iupac-short.R | 17 ++++++++++++----- R/struc-parser-wrapper.R | 30 ++++++++++-------------------- 6 files changed, 66 insertions(+), 39 deletions(-)
Title: 'shiny' Widgets for 'teal' Applications
Description: Collection of 'shiny' widgets to support 'teal' applications.
Enables the manipulation of application layout and plot or table
settings.
Author: Dawid Kaledkowski [aut, cre],
Pawel Rucki [aut],
Mahmoud Hallal [aut],
Nikolas Burkoff [aut],
Maciej Nasinski [aut],
Konrad Pagacz [aut],
Junlue Zhao [aut],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Dawid Kaledkowski <dawid.kaledkowski@roche.com>
Diff between teal.widgets versions 0.5.1 dated 2025-12-02 and 0.6.0 dated 2026-02-24
DESCRIPTION | 20 - MD5 | 35 +- NEWS.md | 6 R/table_with_settings.R | 248 ++++++++++++++---- README.md | 14 - man/table_with_settings.Rd | 35 +- tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/verbatim_popup_ui.md | 4 tests/testthat/helpers-shinytest2.R |only tests/testthat/helpers-testing-depth.R | 2 tests/testthat/helpers-utils.R | 14 - tests/testthat/test-draggable_buckets.R | 72 +++-- tests/testthat/test-get_dt_rows_ui.R | 9 tests/testthat/test-optionalSelectInput_ui.R | 7 tests/testthat/test-optionalSliderInputValMinMax_ui.R | 9 tests/testthat/test-plot_with_settings_ui.R | 159 +++++------ tests/testthat/test-table_with_settings.R | 50 +++ tests/testthat/test-table_with_settings_ui.R | 163 ++++++----- tests/testthat/test-verbatim_popup_ui.R | 26 - 19 files changed, 533 insertions(+), 340 deletions(-)
Title: Single and Multi-Objective Optimization Test Functions
Description: Provides generators for a high number of both single- and multi-
objective test functions which are frequently used for the benchmarking of
(numerical) optimization algorithms. Moreover, it offers a set of convenient
functions to generate, plot and work with objective functions.
Author: Jakob Bossek [aut, cre] ,
Pascal Kerschke [ctb] ,
Lennart Schaepermeier [ctb]
Maintainer: Jakob Bossek <j.bossek@gmail.com>
Diff between smoof versions 1.6.0.3 dated 2023-03-10 and 1.7.0 dated 2026-02-24
DESCRIPTION | 30 - MD5 | 784 +++++++++++++-------------- NAMESPACE | 9 NEWS | 13 NEWS.md | 16 R/RcppExports.R | 4 R/addCountingWrapper.R | 11 R/addLoggingWrapper.R | 20 R/computeExpectedRunningTime.R | 28 R/conversion.R | 21 R/doesCountEvaluations.R | 5 R/filterFunctionsByTags.R | 12 R/getAvailableTags.R | 5 R/getBoxConstraints.R | 5 R/getDescription.R | 3 R/getGlobalOptimum.R | 6 R/getID.R | 8 R/getLocalOptimum.R | 6 R/getLoggedValues.R | 23 R/getMeanFunction.R | 3 R/getName.R | 3 R/getNumberOfEvaluations.R | 5 R/getNumberOfObjectives.R | 3 R/getNumberOfParameters.R | 5 R/getParamSet.R | 2 R/getRefPoint.R | 5 R/getTags.R | 3 R/getWrappedFunction.R | 5 R/hasConstraints.R | 11 R/hasGlobalOptimum.R | 5 R/hasTags.R | 16 R/isMultiobjective.R | 4 R/isNoisy.R | 3 R/isSingleobjective.R | 4 R/isSmoofFunction.R | 3 R/isVectorized.R | 3 R/isWrappedSmoofFunction.R | 3 R/makeBBOBFunction.R | 19 R/makeBiObjBBOBFunction.R | 85 ++ R/makeFunctionsByName.R | 13 R/makeMultiObjectiveFunction.R | 8 R/makeNKFunction.R |only R/makeObjectiveFunction.R | 107 +-- R/makeSingleObjectiveFunction.R | 64 +- R/makeUFFunction.R | 14 R/mnof.R | 17 R/mof.BK1.R | 8 R/mof.ED1.R | 14 R/mof.ED2.R | 13 R/mof.MOP1.R | 9 R/mof.MOP2.R | 13 R/mof.MOP3.R | 13 R/mof.MOP4.R | 9 R/mof.MOP5.R | 11 R/mof.MOP6.R | 9 R/mof.MOP7.R | 11 R/mof.SYMPARTrotated.R | 23 R/mof.SYMPARTsimple.R | 20 R/mof.WFG1.R | 15 R/mof.WFG2.R | 17 R/mof.WFG3.R | 17 R/mof.WFG4.R | 15 R/mof.WFG5.R | 15 R/mof.WFG6.R | 15 R/mof.WFG7.R | 15 R/mof.WFG8.R | 15 R/mof.WFG9.R | 15 R/mof.dent.R | 7 R/mof.dtlz1.R | 9 R/mof.dtlz2.R | 10 R/mof.dtlz3.R | 9 R/mof.dtlz4.R | 11 R/mof.dtlz5.R | 11 R/mof.dtlz6.R | 9 R/mof.dtlz7.R | 11 R/mof.gomop.R | 19 R/mof.kursawe.R | 7 R/mof.mmf1.R | 10 R/mof.mmf10.R | 12 R/mof.mmf11.R | 16 R/mof.mmf12.R | 14 R/mof.mmf13.R | 14 R/mof.mmf14.R | 18 R/mof.mmf14a.R | 18 R/mof.mmf15.R | 18 R/mof.mmf15a.R | 18 R/mof.mmf1e.R | 13 R/mof.mmf1z.R | 14 R/mof.mmf2.R | 12 R/mof.mmf3.R | 12 R/mof.mmf4.R | 12 R/mof.mmf5.R | 13 R/mof.mmf6.R | 12 R/mof.mmf7.R | 12 R/mof.mmf8.R | 12 R/mof.mmf9.R | 14 R/mof.omni.R | 8 R/mof.sphere.R | 11 R/mof.viennet.R | 9 R/mof.zdt1.R | 9 R/mof.zdt2.R | 12 R/mof.zdt3.R | 10 R/mof.zdt4.R | 11 R/mof.zdt6.R | 13 R/plot.autoplot.R | 68 +- R/plot.helpers.R | 39 - R/plot.plot.R | 36 - R/plot3D.R | 30 - R/resetEvaluationCounter.R | 2 R/shouldBeMinimized.R | 2 R/smoof.R | 20 R/smoof_function.R | 8 R/snof.R | 12 R/sof.ackley.R | 13 R/sof.adjiman.R | 11 R/sof.alpine01.R | 13 R/sof.alpine02.R | 15 R/sof.aluffi-pentini.R | 6 R/sof.bartels.conn.R | 11 R/sof.beale.R | 13 R/sof.bent.cigar.R | 11 R/sof.bird.R | 11 R/sof.bohachevsky.n1.R | 15 R/sof.booth.R | 9 R/sof.branin.R | 9 R/sof.brent.R | 9 R/sof.brown.R | 13 R/sof.bukin.n2.R | 11 R/sof.bukin.n4.R | 13 R/sof.bukin.n6.R | 11 R/sof.carrom.table.R | 9 R/sof.chichinadze.R | 9 R/sof.chung.reynolds.R | 17 R/sof.complex.R | 9 R/sof.cosine.mixture.R | 13 R/sof.cross.in.tray.R | 9 R/sof.cube.R | 11 R/sof.deckkers.aarts.R | 9 R/sof.deflected.corrugated.spring.R | 14 R/sof.dixon.price.R | 11 R/sof.double.sum.R | 11 R/sof.drop.wave.R | 13 R/sof.easom.R | 11 R/sof.eggcrate.R | 9 R/sof.eggholder.R | 7 R/sof.el.attar.vidyasagar.dutta.R | 13 R/sof.engvall.R | 9 R/sof.exponential.R | 11 R/sof.freudenstein.roth.R | 9 R/sof.giunta.R | 11 R/sof.goldstein.price.R | 9 R/sof.griewank.R | 13 R/sof.hansen.R | 9 R/sof.hartmann.R | 12 R/sof.himmelblau.R | 13 R/sof.holder.table.n1.R | 13 R/sof.holder.table.n2.R | 11 R/sof.hosaki.R | 9 R/sof.hyper.ellipsoid.R | 13 R/sof.jennrichsampson.R | 9 R/sof.judge.R | 13 R/sof.keane.R | 11 R/sof.kearfott.R | 13 R/sof.leon.R | 11 R/sof.matyas.R | 11 R/sof.mccormick.R | 11 R/sof.michalewicz.R | 15 R/sof.modrastrigin.R | 13 R/sof.mpm2.R | 104 ++- R/sof.periodic.R | 9 R/sof.powell.sum.R | 11 R/sof.price.n1.R | 13 R/sof.price.n2.R | 11 R/sof.price.n4.R | 11 R/sof.rastrigin.R | 13 R/sof.rosenbrock.R | 11 R/sof.schaffer.function.2.R | 11 R/sof.schaffer.function.4.R | 13 R/sof.schwefel.R | 13 R/sof.shekel.R | 18 R/sof.shubert.R | 9 R/sof.six.hump.camel.back.function.R | 7 R/sof.sphere.R | 9 R/sof.styblinski.tang.R | 11 R/sof.sum.of.different.powers.R | 10 R/sof.swiler2014.R | 18 R/sof.three.hump.camel.R | 11 R/sof.trecanni.R | 13 R/sof.vincent.R | 13 R/sof.zettl.R | 11 R/utils.R |only R/violatesConstraints.R | 4 R/visualizeParetoOptimalFront.R | 21 R/zzz.R | 4 inst/CITATION | 4 inst/mpm2.py | 33 + man/addCountingWrapper.Rd | 7 man/addLoggingWrapper.Rd | 5 man/autoplot.smoof_function.Rd | 6 man/computeExpectedRunningTime.Rd | 14 man/conversion.Rd | 7 man/doesCountEvaluations.Rd | 5 man/exportNKFunction.Rd |only man/filterFunctionsByTags.Rd | 4 man/getAvailableTags.Rd | 5 man/getDescription.Rd | 5 man/getGlobalOptimum.Rd | 6 man/getID.Rd | 6 man/getLocalOptimum.Rd | 4 man/getLoggedValues.Rd | 8 man/getLowerBoxConstraints.Rd | 5 man/getMeanFunction.Rd | 5 man/getName.Rd | 5 man/getNumberOfEvaluations.Rd | 9 man/getNumberOfObjectives.Rd | 5 man/getNumberOfParameters.Rd | 5 man/getOptimaDf.Rd |only man/getParamSet.Rd | 2 man/getRefPoint.Rd | 5 man/getTags.Rd | 5 man/getUpperBoxConstraints.Rd | 4 man/getWrappedFunction.Rd | 3 man/hasBoxConstraints.Rd | 4 man/hasConstraints.Rd | 5 man/hasGlobalOptimum.Rd | 5 man/hasLocalOptimum.Rd | 4 man/hasOtherConstraints.Rd | 4 man/hasTags.Rd | 3 man/isMultiobjective.Rd | 6 man/isNoisy.Rd | 5 man/isSingleobjective.Rd | 6 man/isSmoofFunction.Rd | 5 man/isVectorized.Rd | 5 man/isWrappedSmoofFunction.Rd | 5 man/makeAckleyFunction.Rd | 4 man/makeAdjimanFunction.Rd | 4 man/makeAlpine01Function.Rd | 4 man/makeAlpine02Function.Rd | 4 man/makeAluffiPentiniFunction.Rd | 2 man/makeBBOBFunction.Rd | 4 man/makeBK1Function.Rd | 4 man/makeBartelsConnFunction.Rd | 2 man/makeBealeFunction.Rd | 6 man/makeBentCigarFunction.Rd | 2 man/makeBiObjBBOBFunction.Rd | 14 man/makeBiSphereFunction.Rd | 1 man/makeBirdFunction.Rd | 4 man/makeBohachevskyN1Function.Rd | 6 man/makeBoothFunction.Rd | 2 man/makeBraninFunction.Rd | 2 man/makeBrentFunction.Rd | 2 man/makeBrownFunction.Rd | 4 man/makeBukinN2Function.Rd | 4 man/makeBukinN4Function.Rd | 4 man/makeBukinN6Function.Rd | 4 man/makeCarromTableFunction.Rd | 2 man/makeChichinadzeFunction.Rd | 2 man/makeChungReynoldsFunction.Rd | 8 man/makeComplexFunction.Rd | 4 man/makeCosineMixtureFunction.Rd | 2 man/makeCrossInTrayFunction.Rd | 2 man/makeCubeFunction.Rd | 2 man/makeDTLZ1Function.Rd | 1 man/makeDTLZ2Function.Rd | 1 man/makeDTLZ3Function.Rd | 1 man/makeDTLZ4Function.Rd | 1 man/makeDTLZ5Function.Rd | 3 man/makeDTLZ6Function.Rd | 1 man/makeDTLZ7Function.Rd | 3 man/makeDeckkersAartsFunction.Rd | 2 man/makeDeflectedCorrugatedSpringFunction.Rd | 2 man/makeDentFunction.Rd | 3 man/makeDixonPriceFunction.Rd | 2 man/makeDoubleSumFunction.Rd | 2 man/makeED1Function.Rd | 1 man/makeED2Function.Rd | 1 man/makeEasomFunction.Rd | 4 man/makeEggCrateFunction.Rd | 2 man/makeEggholderFunction.Rd | 2 man/makeElAttarVidyasagarDuttaFunction.Rd | 6 man/makeEngvallFunction.Rd | 4 man/makeExponentialFunction.Rd | 2 man/makeFreudensteinRothFunction.Rd | 2 man/makeFunctionsByName.Rd | 3 man/makeGOMOPFunction.Rd | 3 man/makeGeneralizedDropWaveFunction.Rd | 4 man/makeGiuntaFunction.Rd | 4 man/makeGoldsteinPriceFunction.Rd | 2 man/makeGriewankFunction.Rd | 4 man/makeHansenFunction.Rd | 2 man/makeHartmannFunction.Rd | 4 man/makeHimmelblauFunction.Rd | 6 man/makeHolderTableN1Function.Rd | 4 man/makeHolderTableN2Function.Rd | 4 man/makeHosakiFunction.Rd | 2 man/makeHyperEllipsoidFunction.Rd | 4 man/makeInvertedVincentFunction.Rd | 4 man/makeJennrichSampsonFunction.Rd | 4 man/makeJudgeFunction.Rd | 4 man/makeKeaneFunction.Rd | 4 man/makeKearfottFunction.Rd | 4 man/makeKursaweFunction.Rd | 1 man/makeLeonFunction.Rd | 4 man/makeMMF10Function.Rd | 6 man/makeMMF11Function.Rd | 6 man/makeMMF12Function.Rd | 6 man/makeMMF13Function.Rd | 6 man/makeMMF14Function.Rd | 6 man/makeMMF14aFunction.Rd | 6 man/makeMMF15Function.Rd | 6 man/makeMMF15aFunction.Rd | 6 man/makeMMF1Function.Rd | 4 man/makeMMF1eFunction.Rd | 4 man/makeMMF1zFunction.Rd | 6 man/makeMMF2Function.Rd | 6 man/makeMMF3Function.Rd | 6 man/makeMMF4Function.Rd | 6 man/makeMMF5Function.Rd | 6 man/makeMMF6Function.Rd | 6 man/makeMMF7Function.Rd | 6 man/makeMMF8Function.Rd | 6 man/makeMMF9Function.Rd | 6 man/makeMNKFunction.Rd |only man/makeMOP1Function.Rd | 3 man/makeMOP2Function.Rd | 5 man/makeMOP3Function.Rd | 5 man/makeMOP4Function.Rd | 3 man/makeMOP5Function.Rd | 5 man/makeMOP6Function.Rd | 3 man/makeMOP7Function.Rd | 5 man/makeMPM2Function.Rd | 15 man/makeMatyasFunction.Rd | 4 man/makeMcCormickFunction.Rd | 4 man/makeMichalewiczFunction.Rd | 4 man/makeModifiedRastriginFunction.Rd | 4 man/makeMultiObjectiveFunction.Rd | 6 man/makeNKFunction.Rd |only man/makeObjectiveFunction.Rd |only man/makeOmniTestFunction.Rd | 2 man/makePeriodicFunction.Rd | 2 man/makePowellSumFunction.Rd | 2 man/makePriceN1Function.Rd | 6 man/makePriceN2Function.Rd | 2 man/makePriceN4Function.Rd | 4 man/makeRastriginFunction.Rd | 4 man/makeRosenbrockFunction.Rd | 2 man/makeSYMPARTrotatedFunction.Rd | 8 man/makeSYMPARTsimpleFunction.Rd | 8 man/makeSchafferN2Function.Rd | 4 man/makeSchafferN4Function.Rd | 4 man/makeSchwefelFunction.Rd | 4 man/makeShekelFunction.Rd | 4 man/makeShubertFunction.Rd | 4 man/makeSingleObjectiveFunction.Rd | 4 man/makeSixHumpCamelFunction.Rd | 2 man/makeSphereFunction.Rd | 4 man/makeStyblinkskiTangFunction.Rd | 4 man/makeSumOfDifferentSquaresFunction.Rd | 2 man/makeSwiler2014Function.Rd | 2 man/makeThreeHumpCamelFunction.Rd | 4 man/makeTrecanniFunction.Rd | 6 man/makeUFFunction.Rd | 6 man/makeViennetFunction.Rd | 3 man/makeWFG1Function.Rd | 1 man/makeWFG2Function.Rd | 1 man/makeWFG3Function.Rd | 1 man/makeWFG4Function.Rd | 1 man/makeWFG5Function.Rd | 1 man/makeWFG6Function.Rd | 1 man/makeWFG7Function.Rd | 1 man/makeWFG8Function.Rd | 1 man/makeWFG9Function.Rd | 1 man/makeZDT1Function.Rd | 3 man/makeZDT2Function.Rd | 5 man/makeZDT3Function.Rd | 3 man/makeZDT4Function.Rd | 5 man/makeZDT6Function.Rd | 7 man/makeZettlFunction.Rd | 4 man/mnof.Rd | 8 man/plot.smoof_function.Rd | 4 man/plot1DNumeric.Rd | 4 man/plot2DNumeric.Rd | 2 man/plot3D.Rd | 8 man/resetEvaluationCounter.Rd | 4 man/shouldBeMinimized.Rd | 2 man/smoof-package.Rd | 38 + man/smoof_function.Rd | 8 man/snof.Rd | 2 man/violatesConstraints.Rd | 4 man/visualizeParetoOptimalFront.Rd | 4 src/RcppExports.cpp | 38 - src/nk_landscapes.cpp |only tests/testthat/Rplots.pdf |binary tests/testthat/helper_zzz.R | 4 tests/testthat/test_logging.R | 34 + tests/testthat/test_moofuns.R |only tests/testthat/test_rmnk_landscapes.R |only tests/testthat/test_soofuns.R | 93 +++ 398 files changed, 2780 insertions(+), 1615 deletions(-)
Title: Structure for Organizing Monte Carlo Simulation Designs
Description: Provides tools to safely and efficiently organize and execute
Monte Carlo simulation experiments in R.
The package controls the structure and back-end of Monte Carlo simulation experiments
by utilizing a generate-analyse-summarise workflow. The workflow safeguards against
common simulation coding issues, such as automatically re-simulating non-convergent results,
prevents inadvertently overwriting simulation files, catches error and warning messages
during execution, implicitly supports parallel processing with high-quality random number
generation, and provides tools for managing high-performance computing (HPC) array jobs
submitted to schedulers such as SLURM. For a pedagogical introduction to the package see
Sigal and Chalmers (2016) <doi:10.1080/10691898.2016.1246953>. For a more in-depth overview of
the package and its design philosophy see Chalmers and Adkins (2020) <doi:10.20982/tqmp.16.4.p248>.
Author: Phil Chalmers [aut, cre] ,
Matthew Sigal [ctb],
Ogreden Oguzhan [ctb],
Mikko Roenkkoe [aut],
Moritz Ketzer [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between SimDesign versions 2.23 dated 2026-02-10 and 2.24 dated 2026-02-24
DESCRIPTION | 6 - MD5 | 50 ++++++------- NAMESPACE | 1 NEWS.md | 9 ++ R/SimCollect.R | 49 +++++++++++++ R/SimExtract.R | 51 +++++++++---- R/SimResults.R | 2 R/analysis.R | 6 - R/descript.R | 144 +++++++++++++++++++++++++++------------ R/runSimulation.R | 29 +++++-- inst/doc/Catch_errors.html | 10 +- inst/doc/Fixed_obj_fun.html | 10 +- inst/doc/HPC-computing.html | 4 - inst/doc/MultipleAnalyses.html | 4 - inst/doc/Parallel-computing.html | 4 - inst/doc/Saving-results.html | 4 - inst/doc/SimDesign-intro.R | 1 inst/doc/SimDesign-intro.Rmd | 1 inst/doc/SimDesign-intro.html | 12 ++- man/SimCollect.Rd | 27 +++++++ man/SimExtract.Rd | 51 +++++++++---- man/SimResults.Rd | 3 man/descript.Rd | 86 ++++++++++++++--------- man/runSimulation.Rd | 21 ++++- tests/tests/test-02-aggregate.R | 5 - vignettes/SimDesign-intro.Rmd | 1 26 files changed, 417 insertions(+), 174 deletions(-)
Title: Spatially Explicit Capture-Recapture
Description: Functions to estimate the density and size of a spatially
distributed animal population sampled with an array of passive detectors,
such as traps, or by searching polygons or transects. Models incorporating
distance-dependent detection are fitted by maximizing the likelihood.
Tools are included for data manipulation and model selection.
Author: Murray Efford [aut, cre] ,
Philipp Jund [ctb] ,
David Fletcher [ctb] ,
Yan Ru Choo [ctb]
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between secr versions 5.4.1 dated 2026-01-11 and 5.4.2 dated 2026-02-24
DESCRIPTION | 8 ++++---- MD5 | 41 +++++++++++++++++++++-------------------- NEWS | 10 +++++++--- R/regionN.R | 5 +++++ R/trend.R | 23 +++++++++++++++-------- data/OVpossum.RData |binary data/blackbear.RData |binary data/deermouse.RData |binary data/hornedlizard.RData |binary data/housemouse.RData |binary data/ovenbird.RData |binary data/ovensong.RData |binary data/possum.RData |binary data/secrdemo.RData |binary data/skink.RData |binary data/stoatDNA.RData |binary inst/doc/secr-datainput.pdf |binary inst/doc/secr-overview.pdf |binary man/hornedlizard.Rd | 13 ++++++++++--- man/ovenbird.Rd | 16 ++++++++++++---- man/secr-package.Rd | 4 ++-- tests/testthat/test-Dlambda.R |only 22 files changed, 76 insertions(+), 44 deletions(-)
Title: Log-Likelihood Functions for 'rxode2'
Description: Provides the log-likelihoods with gradients from 'stan'
(Carpenter et al (2015), <doi:10.48550/arXiv.1509.07164>) needed
for generalized log-likelihood estimation in 'nlmixr2'
(Fidler et al (2019) <doi:10.1002/psp4.12445>). This is
split of to reduce computational burden of recompiling 'rxode2'
(Wang, Hallow and James (2016) <doi:10.1002/psp4.12052>) which runs
the 'nlmixr2' models during estimation.
Author: Matthew L. Fidler [aut, cre]
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Diff between rxode2ll versions 2.0.13 dated 2024-12-14 and 2.0.14 dated 2026-02-24
DESCRIPTION | 11 ++++++----- MD5 | 40 ++++++++++++++++++++-------------------- NEWS.md | 4 ++++ README.md | 37 ++++++++++++++++++------------------- src/Makevars.in | 2 +- src/llik2.h | 16 ++++++++++++++++ src/llikBeta.cpp | 18 ++++++++++++++++++ src/llikBinom.cpp | 18 ++++++++++++++++++ src/llikCauchy.cpp | 18 ++++++++++++++++++ src/llikChisq.cpp | 17 +++++++++++++++++ src/llikExp.cpp | 17 +++++++++++++++++ src/llikF.cpp | 18 ++++++++++++++++++ src/llikGamma.cpp | 18 ++++++++++++++++++ src/llikGeom.cpp | 17 +++++++++++++++++ src/llikNbinom.cpp | 18 ++++++++++++++++++ src/llikNbinom2.cpp | 18 ++++++++++++++++++ src/llikNorm.cpp | 18 ++++++++++++++++++ src/llikPois.cpp | 17 +++++++++++++++++ src/llikT.cpp | 19 +++++++++++++++++++ src/llikUnif.cpp | 18 ++++++++++++++++++ src/llikWeibull.cpp | 18 ++++++++++++++++++ 21 files changed, 332 insertions(+), 45 deletions(-)
Title: Query 'SWI'-'Prolog' from R
Description: This R package connects to SWI-Prolog, <https://www.swi-prolog.org/>, so that R can send deterministic and non-deterministic queries to prolog (consult, query/submit, once, findall).
Author: Matthias Gondan [aut, com, cre] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
Diff between rolog versions 0.9.24 dated 2026-01-14 and 0.9.25 dated 2026-02-24
DESCRIPTION | 14 +++++++------- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/plbase.R | 24 +++++++++++++++++++++++- inst/doc/rolog.html | 8 ++++---- src/rolog.cpp | 30 +++++++++++++++--------------- 6 files changed, 59 insertions(+), 32 deletions(-)
Title: Parallel Low-Rank Approximation with Nonnegativity Constraints
Description: 'Rcpp' bindings for 'PLANC', a highly parallel
and extensible NMF/NTF (Non-negative Matrix/Tensor Factorization) library.
Wraps algorithms described in
Kannan et. al (2018) <doi:10.1109/TKDE.2017.2767592> and
Eswar et. al (2021) <doi:10.1145/3432185>.
Implements algorithms described in
Welch et al. (2019) <doi:10.1016/j.cell.2019.05.006>,
Gao et al. (2021) <doi:10.1038/s41587-021-00867-x>, and
Kriebel & Welch (2022) <doi:10.1038/s41467-022-28431-4>.
Author: Andrew Robbins [aut, cre] ,
Yichen Wang [aut],
Joshua Welch [cph] ,
Ramakrishnan Kannan [cph] ,
Conrad Sanderson [cph] ,
Blue Brain Project/EPFL [cph] ,
UT-Batelle [cph]
Maintainer: Andrew Robbins <robbiand@umich.edu>
Diff between RcppPlanc versions 2.0.13 dated 2025-07-14 and 2.0.14 dated 2026-02-24
DESCRIPTION | 10 MD5 | 40 +- NEWS.md | 4 R/INMF.R | 326 +++++++++++++---- R/conversion.R | 36 + R/data.R | 10 R/utils.R | 138 +++++-- build/vignette.rds |binary inst/doc/RcppPlanc.html | 15 src/planc/CMakeLists.txt | 54 +- src/planc/CMakePresets.json | 20 - src/planc/cmake/FindHWLOC.cmake | 4 src/planc/pyproject.toml | 87 +++- src/planc/vcpkg.json | 11 tests/testthat/helper-nmf.R | 8 tests/testthat/test_inmf.R | 509 ++++++++++++++++++++-------- tests/testthat/test_nmf.R | 171 +++++---- tools/patches/00_remove_stdio.patch | 482 ++++++++++++++------------ tools/patches/01_remove_sprintf.patch | 135 +++---- tools/patches/02_adjust_windows_types.patch | 16 tools/patches/03_remove_abort.patch | 8 21 files changed, 1347 insertions(+), 737 deletions(-)
Title: Utilities for Scheduling Functions to Execute Later with Event
Loops
Description: Executes arbitrary R or C functions some time after the
current time, after the R execution stack has emptied. The functions
are scheduled in an event loop.
Author: Winston Chang [aut] ,
Joe Cheng [aut],
Charlie Gao [aut, cre] ,
Posit Software, PBC [cph, fnd] ,
Marcus Geelnard [ctb, cph] ,
Evan Nemerson [ctb, cph]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between later versions 1.4.6 dated 2026-02-13 and 1.4.7 dated 2026-02-24
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ inst/doc/later-cpp.html | 4 ++-- src/badthreads.h | 2 ++ src/tinycthread.c | 2 +- src/tinycthread.h | 10 +++++----- 7 files changed, 23 insertions(+), 17 deletions(-)
Title: Create Tables from Different Types of Regression
Description: Create regression tables from generalized linear model(GLM), generalized estimating equation(GEE), generalized linear mixed-effects model(GLMM), Cox proportional hazards model, survey-weighted generalized linear model(svyglm) and survey-weighted Cox model results for publication.
Author: Jinseob Kim [aut, cre] ,
Zarathu [cph, fnd],
Yoonkyoung Jeon [aut],
Jaehun Shon [aut],
Hyojong Myung [aut],
Hyungwoo Jo [aut],
Sungho Choi [aut],
Jaewoong Heo [aut],
Mingu Jee [aut],
Yujeong Yoon [aut],
Minhyuk Kim [aut],
Wonbin Hahn [aut],
Taehong K [...truncated...]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jstable versions 1.3.23 dated 2026-01-27 and 1.3.24 dated 2026-02-24
DESCRIPTION | 19 +- MD5 | 34 ++-- NAMESPACE | 1 NEWS.md | 4 R/cox2.R | 204 ++++++++++++++++---------- R/coxme.R | 2 R/forestglm.R | 4 R/gee.R | 140 +++++++++++------ R/glmshow.R | 51 +++++- R/lmer.R | 148 +++++++++++++++--- R/svycox.R | 78 ++++++++- R/svyglm.R | 169 ++++++++++++++++++--- build/vignette.rds |binary inst/doc/jstable.html | 30 +-- inst/doc/jstable_competing_risk_analysis.html | 4 inst/doc/jstable_options.html | 4 tests/testthat/test-forestcox.R | 2 tests/testthat/test-regtable.R | 12 + 18 files changed, 665 insertions(+), 241 deletions(-)
Title: String Patterns and Statistical Differences Between Two Groups
of Strings
Description: Methods include converting series of event names to strings, finding common patterns
in a group of strings, discovering "unique" patterns when comparing two groups of strings as well
as the number and starting position of each pattern in each string, obtaining transition matrix,
computing transition entropy, statistically comparing the difference between two groups of strings,
and clustering string groups. Event names can be any action names or labels such as events in log files or areas of interest (AOIs) in eye tracking research.
An R Shiny application is available on GitHub.
Author: Hui Tang [aut],
Norbert J. Pienta [aut],
Hui Tang [cre]
Maintainer: Hui Tang <htang2013@gmail.com>
Diff between GrpString versions 0.3.2 dated 2017-08-15 and 0.5.1 dated 2026-02-24
GrpString-0.3.2/GrpString/R/FeaturedPatt.R |only GrpString-0.3.2/GrpString/man/EveS.Rd |only GrpString-0.3.2/GrpString/man/FeaturedPatt.Rd |only GrpString-0.5.1/GrpString/DESCRIPTION | 44 + GrpString-0.5.1/GrpString/LICENSE |only GrpString-0.5.1/GrpString/MD5 | 56 +- GrpString-0.5.1/GrpString/NAMESPACE | 3 GrpString-0.5.1/GrpString/NEWS.md | 106 ++-- GrpString-0.5.1/GrpString/R/CommonPatt.R | 354 +++++++-------- GrpString-0.5.1/GrpString/R/CommonPattern.R | 479 +++++++++------------ GrpString-0.5.1/GrpString/R/EveS.R | 14 GrpString-0.5.1/GrpString/R/EveStr.R | 4 GrpString-0.5.1/GrpString/R/EveString.R | 4 GrpString-0.5.1/GrpString/R/StrDif.R | 6 GrpString-0.5.1/GrpString/R/StrKclust.R | 10 GrpString-0.5.1/GrpString/R/TransInfo.R | 183 +++----- GrpString-0.5.1/GrpString/R/TransMx.R | 373 +++++++--------- GrpString-0.5.1/GrpString/R/UniPatterns.R |only GrpString-0.5.1/GrpString/man/CommonPatt.Rd | 8 GrpString-0.5.1/GrpString/man/CommonPattern.Rd | 159 +++--- GrpString-0.5.1/GrpString/man/EveStr.Rd | 1 GrpString-0.5.1/GrpString/man/EveString.Rd | 1 GrpString-0.5.1/GrpString/man/GrpString-package.Rd | 79 +-- GrpString-0.5.1/GrpString/man/PatternInfo.Rd | 2 GrpString-0.5.1/GrpString/man/StrDif.Rd | 10 GrpString-0.5.1/GrpString/man/StrKclust.Rd | 5 GrpString-0.5.1/GrpString/man/TransEntro.Rd | 2 GrpString-0.5.1/GrpString/man/TransEntropy.Rd | 2 GrpString-0.5.1/GrpString/man/TransInfo.Rd | 1 GrpString-0.5.1/GrpString/man/TransMx.Rd | 85 +-- GrpString-0.5.1/GrpString/man/UniPatterns.Rd |only GrpString-0.5.1/GrpString/man/eventChar.df.Rd | 3 32 files changed, 944 insertions(+), 1050 deletions(-)
Title: Faster K-Medoids Clustering Algorithms: FastPAM, FastCLARA,
FastCLARANS
Description: R wrappers of C++ implementation of Faster K-Medoids clustering algorithms (FastPAM, FastCLARA and FastCLARANS) proposed in Erich Schubert, Peter J. Rousseeuw 2019 <doi:10.1007/978-3-030-32047-8_16>.
Author: Xun Li [aut, cre]
Maintainer: Xun Li <lixun910@gmail.com>
Diff between fastkmedoids versions 1.2 dated 2021-01-21 and 1.3 dated 2026-02-24
DESCRIPTION | 23 ++++--- MD5 | 14 +++- NAMESPACE | 12 +++- R/KmedoidsResult.R | 1 R/fastkmedoids-package.R |only build |only man/fastkmedoids-package.Rd | 127 ++++++++++++++++++++------------------------ src/RcppExports.cpp | 5 + tests |only 9 files changed, 96 insertions(+), 86 deletions(-)
Title: Observed-Score Linking and Equating
Description: Contains methods for observed-score linking
and equating under the single-group, equivalent-groups,
and nonequivalent-groups with anchor test(s) designs.
Equating types include identity, mean, linear, general
linear, equipercentile, circle-arc, and composites of
these. Equating methods include synthetic, nominal
weights, Tucker, Levine observed score, Levine true
score, Braun/Holland, frequency estimation, and chained
equating. Plotting and summary methods, and methods for
multivariate presmoothing and bootstrap error estimation
are also provided.
Author: Anthony Albano [aut, cre]
Maintainer: Anthony Albano <tony.d.albano@gmail.com>
Diff between equate versions 2.0.8 dated 2022-06-07 and 2.0.9 dated 2026-02-24
DESCRIPTION | 14 - MD5 | 36 +- NEWS | 11 NEWS.md | 44 ++- R/PISA.R | 5 R/equate-package.R | 8 R/equate.R | 113 ++++----- R/linear.R | 42 ++- R/presmoothing.R | 7 build/vignette.rds |binary inst/doc/equate-jss.R | 20 - inst/doc/equate-jss.html | 570 +++++++++++++++++++++++------------------------ man/PISA.Rd | 6 man/bootstrap.Rd | 8 man/composite.Rd | 8 man/equate-package.Rd | 20 + man/equate.Rd | 8 man/freqtab.Rd | 6 man/presmoothing.Rd | 6 19 files changed, 496 insertions(+), 436 deletions(-)
Title: Command-Line Argument Parser
Description: Cross-platform command-line argument parser written purely in R
with no external dependencies. It is useful with the Rscript
front-end and facilitates turning an R script into an executable script.
Author: David J. H. Shih [aut, cre]
Maintainer: David J. H. Shih <djh.shih@gmail.com>
Diff between argparser versions 0.7.2 dated 2024-04-04 and 0.7.3 dated 2026-02-24
argparser-0.7.2/argparser/demo/round-magrittr.R |only argparser-0.7.3/argparser/DESCRIPTION | 14 +++++++++----- argparser-0.7.3/argparser/MD5 | 6 +++--- argparser-0.7.3/argparser/demo/00Index | 2 +- argparser-0.7.3/argparser/demo/round-pipe.R |only 5 files changed, 13 insertions(+), 9 deletions(-)