Title: Weighted Iterative Proportional Fitting
Description: Implementation of the weighted iterative proportional fitting (WIPF) procedure for updating/adjusting a N-dimensional array given a weight structure and some target marginals.
Acknowledgements:
The author wish to thank Conselleria de Educación, Cultura, Universidades y Empleo (grant CIAICO/2023/031), Ministerio de Ciencia, Innovación y Universidades (grant PID2021-128228NB-I00) and Fundación Mapfre (grant 'Modelización espacial e intra-anual de la mortalidad en España. Una herramienta automática para el cálculo de productos de vida') for supporting this research.
Author: Jose M. Pavia [aut, cre]
Maintainer: Jose M. Pavia <jose.m.pavia@uv.es>
Diff between WIPF versions 0.1.0-3 dated 2026-01-07 and 0.1.0-4 dated 2026-03-06
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 9 +++++++++ R/WIPF.R | 19 +++++++++++++++---- R/WIPF1.R | 4 ++-- R/WIPF2.R | 14 ++++++++++---- R/WIPF3.R | 19 ++++++++++++++++--- man/WIPF.Rd | 8 ++++++-- man/WIPF1.Rd | 2 +- man/WIPF2.Rd | 7 +++++-- man/WIPF3.Rd | 7 +++++-- 11 files changed, 82 insertions(+), 33 deletions(-)
More information about videogameinsightsR at CRAN
Permanent link
More information about multiobjectiveMDP at CRAN
Permanent link
Title: R Bindings for the UCR Suite
Description: R bindings for functions from the UCR Suite by Rakthanmanon et al. (2012) <DOI:10.1145/2339530.2339576>, which enables ultrafast subsequence
search for a best match under Dynamic Time Warping and Euclidean Distance.
Author: Philipp Boersch-Supan [aut, cre] ,
Thanawin Rakthanmanon [aut],
Bilson Campana [aut],
Abdullah Mueen [aut],
Gustavo Batista [aut],
Eamonn Keogh [aut]
Maintainer: Philipp Boersch-Supan <pboesu@gmail.com>
Diff between rucrdtw versions 0.1.6 dated 2023-12-11 and 0.1.7 dated 2026-03-06
DESCRIPTION | 14 +++--- MD5 | 36 +++++++-------- NEWS.md | 4 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/using_rucrdtw.R | 6 +- inst/doc/using_rucrdtw.html | 15 +++--- man/rucrdtw-package.Rd | 100 ++++++++++++++++++++++---------------------- man/synthetic_control.Rd | 54 +++++++++++------------ man/ucrdtw_ff.Rd | 94 ++++++++++++++++++++--------------------- man/ucrdtw_fv.Rd | 90 +++++++++++++++++++-------------------- man/ucrdtw_mv.Rd | 96 +++++++++++++++++++++--------------------- man/ucrdtw_vv.Rd | 94 ++++++++++++++++++++--------------------- man/ucred_ff.Rd | 70 +++++++++++++++--------------- man/ucred_fv.Rd | 62 +++++++++++++-------------- man/ucred_mv.Rd | 76 ++++++++++++++++----------------- man/ucred_vv.Rd | 66 ++++++++++++++--------------- src/RcppExports.cpp | 12 ++--- src/dtw_functions.cpp | 8 --- 19 files changed, 450 insertions(+), 447 deletions(-)
Title: A Toolkit for Recursive Partytioning
Description: A toolkit with infrastructure for representing, summarizing, and
visualizing tree-structured regression and classification models. This
unified infrastructure can be used for reading/coercing tree models from
different sources ('rpart', 'RWeka', 'PMML') yielding objects that share
functionality for print()/plot()/predict() methods. Furthermore, new and improved
reimplementations of conditional inference trees (ctree()) and model-based
recursive partitioning (mob()) from the 'party' package are provided based
on the new infrastructure. A description of this package was published
by Hothorn and Zeileis (2015) <https://jmlr.org/papers/v16/hothorn15a.html>.
Author: Torsten Hothorn [aut, cre] ,
Heidi Seibold [ctb] ,
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between partykit versions 1.2-25 dated 2026-02-07 and 1.2-26 dated 2026-03-06
partykit-1.2-25/partykit/vignettes/party.bib |only partykit-1.2-26/partykit/DESCRIPTION | 10 +-- partykit-1.2-26/partykit/MD5 | 62 +++++++++++----------- partykit-1.2-26/partykit/build/partial.rdb |binary partykit-1.2-26/partykit/build/vignette.rds |binary partykit-1.2-26/partykit/inst/NEWS.Rd | 9 +++ partykit-1.2-26/partykit/inst/REFERENCES.bib |only partykit-1.2-26/partykit/inst/doc/constparty.Rnw | 2 partykit-1.2-26/partykit/inst/doc/constparty.pdf |binary partykit-1.2-26/partykit/inst/doc/ctree.Rnw | 2 partykit-1.2-26/partykit/inst/doc/ctree.pdf |binary partykit-1.2-26/partykit/inst/doc/mob.Rnw | 2 partykit-1.2-26/partykit/inst/doc/mob.pdf |binary partykit-1.2-26/partykit/inst/doc/partykit.Rnw | 2 partykit-1.2-26/partykit/inst/doc/partykit.pdf |binary partykit-1.2-26/partykit/man/HuntingSpiders.Rd | 15 +---- partykit-1.2-26/partykit/man/WeatherPlay.Rd | 8 -- partykit-1.2-26/partykit/man/cforest.Rd | 58 +++----------------- partykit-1.2-26/partykit/man/ctree.Rd | 31 ++--------- partykit-1.2-26/partykit/man/ctree_control.Rd | 17 +----- partykit-1.2-26/partykit/man/glmtree.Rd | 8 +- partykit-1.2-26/partykit/man/lmtree.Rd | 8 +- partykit-1.2-26/partykit/man/mob.Rd | 14 +--- partykit-1.2-26/partykit/man/panelfunctions.Rd | 12 +--- partykit-1.2-26/partykit/man/party-plot.Rd | 12 +--- partykit-1.2-26/partykit/man/party.Rd | 10 +-- partykit-1.2-26/partykit/man/partynode.Rd | 10 +-- partykit-1.2-26/partykit/man/partysplit.Rd | 10 +-- partykit-1.2-26/partykit/man/varimp.Rd | 21 +------ partykit-1.2-26/partykit/vignettes/constparty.Rnw | 2 partykit-1.2-26/partykit/vignettes/ctree.Rnw | 2 partykit-1.2-26/partykit/vignettes/mob.Rnw | 2 partykit-1.2-26/partykit/vignettes/partykit.Rnw | 2 33 files changed, 113 insertions(+), 218 deletions(-)
Title: Nonparametric Regression via Smoothing Splines
Description: Multiple and generalized nonparametric regression using smoothing spline ANOVA models and generalized additive models, as described in Helwig (2020) <doi:10.4135/9781526421036885885>. Includes support for Gaussian and non-Gaussian responses, smoothers for multiple types of predictors (including random intercepts), interactions between smoothers of mixed types, eight different methods for smoothing parameter selection, and flexible tools for diagnostics, inference, and prediction.
Author: Nathaniel E. Helwig [aut, cre]
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Diff between npreg versions 1.1.0 dated 2024-03-29 and 1.1.1 dated 2026-03-06
ChangeLog | 11 +++++++++++ DESCRIPTION | 13 +++++++------ MD5 | 13 +++++++------ NAMESPACE | 3 +++ R/dffits.R |only R/fit_gsm.R | 6 +++--- build/partial.rdb |binary man/smooth.influence.measures.Rd | 7 +++++++ 8 files changed, 38 insertions(+), 15 deletions(-)
Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation
models via the most likely transformation approach described in
Hothorn et al. (2018) <DOI:10.1111/sjos.12291> and Hothorn (2020)
<DOI:10.18637/jss.v092.i01>. Shift-scale (Siegfried et al, 2023, <DOI:10.1080/00031305.2023.2203177>)
and multivariate (Klein et al, 2022, <DOI:10.1111/sjos.12501>) transformation models
are part of this package. A package vignette is available from <DOI:10.32614/CRAN.package.mlt.docreg> and
more convenient user interfaces to many models from <DOI:10.32614/CRAN.package.tram>.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt versions 1.7-3 dated 2025-12-12 and 1.7-4 dated 2026-03-06
DESCRIPTION | 10 +++++----- MD5 | 23 ++++++++++++----------- R/mlt.R | 1 + R/mmlt.R | 50 ++++++++++++++++++++++++++++---------------------- build/partial.rdb |binary inst/NEWS.Rd | 16 ++++++++++++++++ inst/REFERENCES.bib |only man/R.Rd | 11 ++--------- man/ctm.Rd | 16 +++------------- man/mlt-package.Rd | 32 +++++--------------------------- man/mlt.Rd | 22 +++++----------------- man/mmlt.Rd | 22 ++++++++++++---------- man/predict.Rd | 11 ++--------- 13 files changed, 91 insertions(+), 123 deletions(-)
Title: Generating Cluster Masks for Single-Cell Dimensional Reduction
Plots
Description: Implements a procedure to automatically generate 2D masks
for clusters on dimensional reduction plots from methods like
t-SNE (t-distributed stochastic neighbor embedding) or
UMAP (uniform manifold approximation and projection),
with a focus on single-cell RNA-sequencing data.
Author: Alexey Sergushichev [aut, cre]
Maintainer: Alexey Sergushichev <alsergbox@gmail.com>
Diff between mascarade versions 0.3.1 dated 2026-02-13 and 0.3.2 dated 2026-03-06
DESCRIPTION | 6 MD5 | 17 - NEWS.md | 3 R/fancyMask.R | 8 R/generateMask.R | 3 build/vignette.rds |binary inst/doc/mascarade-gallery.html | 296 +++++++++++++------------- inst/doc/mascarade-tutorial.html | 441 +++++++++++++++++++-------------------- tests/testthat/test-emptyMask.R |only tests/testthat/test-fancyMask.R | 27 ++ 10 files changed, 419 insertions(+), 382 deletions(-)
Title: Linear Test Statistics for Permutation Inference
Description: Basic infrastructure for linear test statistics and permutation
inference in the framework of Strasser and Weber (1999) <https://epub.wu.ac.at/102/>.
This package must not be used by end-users. CRAN package 'coin' implements all
user interfaces and is ready to be used by anyone.
Author: Torsten Hothorn [aut, cre] ,
Henric Winell [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between libcoin versions 1.0-10 dated 2023-09-27 and 1.0-11 dated 2026-03-06
libcoin-1.0-10/libcoin/inst/nuweb/libcoin.bib |only libcoin-1.0-10/libcoin/vignettes/libcoin.bib |only libcoin-1.0-11/libcoin/DESCRIPTION | 15 +- libcoin-1.0-11/libcoin/MD5 | 22 ++-- libcoin-1.0-11/libcoin/build/partial.rdb |only libcoin-1.0-11/libcoin/build/vignette.rds |binary libcoin-1.0-11/libcoin/cleanup | 28 +++++ libcoin-1.0-11/libcoin/inst/NEWS.Rd | 7 + libcoin-1.0-11/libcoin/inst/REFERENCES.bib |only libcoin-1.0-11/libcoin/inst/doc/libcoin.Rnw | 137 +++++++++++++------------- libcoin-1.0-11/libcoin/inst/doc/libcoin.pdf |binary libcoin-1.0-11/libcoin/inst/nuweb/libcoin.w | 26 +++- libcoin-1.0-11/libcoin/man/LinStatExpCov.Rd | 11 +- libcoin-1.0-11/libcoin/vignettes/libcoin.Rnw | 137 +++++++++++++------------- 14 files changed, 217 insertions(+), 166 deletions(-)
Title: Infrastructure for Computing with Basis Functions
Description: Some very simple infrastructure for basis functions.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between basefun versions 1.2-5 dated 2025-10-05 and 1.2-6 dated 2026-03-06
DESCRIPTION | 10 +++++----- MD5 | 17 +++++++++-------- build/partial.rdb |binary inst/NEWS.Rd | 7 +++++++ inst/REFERENCES.bib |only man/Bernstein_basis.Rd | 10 ++-------- man/Legendre_basis.Rd | 9 ++------- man/basefun-package.Rd | 17 +++++------------ man/cyclic_basis.Rd | 10 ++-------- man/predict.Rd | 11 ++--------- 10 files changed, 34 insertions(+), 57 deletions(-)
Title: Versatile Curation of Table Metadata
Description: A YAML-based
mechanism for working with table metadata. Supports
compact syntax for creating, modifying, viewing, exporting,
importing, displaying, and plotting metadata coded as column
attributes. The 'yamlet' dialect is valid 'YAML' with
defaults and conventions chosen to improve readability.
See ?yamlet, ?decorate, ?modify, ?io_csv, and ?ggplot.decorated.
Author: Tim Bergsma [aut, cre]
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between yamlet versions 1.3.2 dated 2026-01-16 and 1.3.3 dated 2026-03-06
DESCRIPTION | 6 - MD5 | 24 +++--- R/singularity.R | 9 ++ R/yamlet.R | 2 inst/doc/aesthetics.html | 6 - inst/doc/scripted-html.html | 4 - inst/doc/scripted-pdf.pdf |binary inst/doc/yamlet-introduction.html | 4 - man/unnest.Rd | 2 tests/testthat/Rplots.pdf |binary tests/testthat/test-yamlet.R | 37 +++++++++- vignettes/scripted-pdf_files/figure-latex/unnamed-chunk-4-1.pdf |binary vignettes/scripted-pdf_files/figure-latex/unnamed-chunk-5-1.pdf |binary 13 files changed, 68 insertions(+), 26 deletions(-)
Title: Nested Dichotomy Logistic Regression Models
Description: Provides functions for specifying and fitting nested
dichotomy logistic regression models for a multi-category response and
methods for summarising and plotting those models. Nested dichotomies are
statistically independent, and hence provide an additive decomposition
of tests for the overall 'polytomous' response. When the dichotomies
make sense substantively, this method can be a simpler alternative to
the standard 'multinomial' logistic model which compares response
categories to a reference level. See: J. Fox (2016), "Applied
Regression Analysis and Generalized Linear Models", 3rd Ed., ISBN
1452205663.
Author: John Fox [aut] ,
Michael Friendly [aut, cre] ,
Achim Zeileis [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between nestedLogit versions 0.3.4 dated 2026-02-01 and 0.4.0 dated 2026-03-06
nestedLogit-0.3.4/nestedLogit/vignettes/fig |only nestedLogit-0.4.0/nestedLogit/DESCRIPTION | 16 nestedLogit-0.4.0/nestedLogit/MD5 | 77 nestedLogit-0.4.0/nestedLogit/NAMESPACE | 6 nestedLogit-0.4.0/nestedLogit/NEWS.md | 22 nestedLogit-0.4.0/nestedLogit/R/GSS.R | 14 nestedLogit-0.4.0/nestedLogit/R/as.tree.R |only nestedLogit-0.4.0/nestedLogit/R/gators.R |only nestedLogit-0.4.0/nestedLogit/R/nestedHypotheses.R | 394 ++-- nestedLogit-0.4.0/nestedLogit/R/nestedMethods.R | 818 +++------- nestedLogit-0.4.0/nestedLogit/R/plot.nested-ci.R | 187 +- nestedLogit-0.4.0/nestedLogit/R/predict.nestedLogit.R |only nestedLogit-0.4.0/nestedLogit/build/vignette.rds |binary nestedLogit-0.4.0/nestedLogit/data/GSS.RData |binary nestedLogit-0.4.0/nestedLogit/data/gators.RData |only nestedLogit-0.4.0/nestedLogit/inst/WORDLIST | 21 nestedLogit-0.4.0/nestedLogit/inst/doc/ggeffects.R |only nestedLogit-0.4.0/nestedLogit/inst/doc/ggeffects.Rmd |only nestedLogit-0.4.0/nestedLogit/inst/doc/ggeffects.html |only nestedLogit-0.4.0/nestedLogit/inst/doc/nestedLogit.html | 32 nestedLogit-0.4.0/nestedLogit/inst/doc/other-examples.R |only nestedLogit-0.4.0/nestedLogit/inst/doc/other-examples.Rmd |only nestedLogit-0.4.0/nestedLogit/inst/doc/other-examples.html |only nestedLogit-0.4.0/nestedLogit/inst/doc/plotting-ggplot.html | 28 nestedLogit-0.4.0/nestedLogit/man/GSS.Rd | 96 - nestedLogit-0.4.0/nestedLogit/man/as.tree.Rd |only nestedLogit-0.4.0/nestedLogit/man/figures/fishing-trees.png |only nestedLogit-0.4.0/nestedLogit/man/figures/nested.jpg |only nestedLogit-0.4.0/nestedLogit/man/gators.Rd |only nestedLogit-0.4.0/nestedLogit/man/models.Rd | 18 nestedLogit-0.4.0/nestedLogit/man/nestedHypotheses.Rd | 180 +- nestedLogit-0.4.0/nestedLogit/man/nestedMethods.Rd | 316 +-- nestedLogit-0.4.0/nestedLogit/man/plot.nestedLogit.Rd | 68 nestedLogit-0.4.0/nestedLogit/man/predict.nestedLogit.Rd |only nestedLogit-0.4.0/nestedLogit/tests/testthat/test-fitted-probs.R | 62 nestedLogit-0.4.0/nestedLogit/tests/testthat/test-probs-SEs.R | 84 - nestedLogit-0.4.0/nestedLogit/vignettes/ggeffects.Rmd |only nestedLogit-0.4.0/nestedLogit/vignettes/other-examples.Rmd |only nestedLogit-0.4.0/nestedLogit/vignettes/references.bib | 57 39 files changed, 1256 insertions(+), 1240 deletions(-)
Title: Bayesian Methods for Change Point Analysis
Description: Performs change point detection on univariate and multivariate time series (Martínez & Mena, 2014, <doi:10.1214/14-BA878> ; Corradin, Danese & Ongaro, 2022, <doi:10.1016/j.ijar.2021.12.019>) and clusters time-dependent data with common change points (Corradin, Danese, KhudaBukhsh & Ongaro, 2026, <doi:10.1007/s11222-025-10756-x>).
Author: Luca Danese [aut, cre, cph] ,
Riccardo Corradin [aut],
Andrea Ongaro [aut]
Maintainer: Luca Danese <l.danese1@campus.unimib.it>
Diff between BayesChange versions 2.2.0 dated 2026-01-14 and 2.3.0 dated 2026-03-06
DESCRIPTION | 6 - MD5 | 22 ++-- NEWS.md | 13 -- R/ClustCpObj.R | 12 +- R/DetectCpObj.R | 47 +++++++-- inst/doc/tutorial.html | 176 +++++++++++++++++----------------- man/plot.DetectCpObj.Rd | 10 - man/posterior_estimate.ClustCpObj.Rd | 8 - man/posterior_estimate.DetectCpObj.Rd | 11 +- man/print.ClustCpObj.Rd | 2 man/summary.ClustCpObj.Rd | 2 man/summary.DetectCpObj.Rd | 2 12 files changed, 169 insertions(+), 142 deletions(-)
Title: Descriptive, Reliability, and Inferential Tables for
Psychometric Scales and Demographic Data
Description: Provides functions to format and summarise already computed outputs from commonly used statistical and psychometric functions into compact, single-row tables and simple graphs, with utilities to export results to CSV, Word, and Excel formats. The package does not implement new statistical methods or estimation procedures; instead, it organises and presents results obtained from existing functions such as psych::describe(), psych::alpha(), stats::t.test(), and gtsummary::tbl_summary() to streamline reporting workflows in clinical and psychological research.
Author: Darshankumar Dharaiya [aut, cre]
Maintainer: Darshankumar Dharaiya <dharaiya.darshan@gmail.com>
Diff between scaledescr versions 0.2.0 dated 2026-02-11 and 0.2.1 dated 2026-03-06
DESCRIPTION | 6 - MD5 | 17 +-- NEWS.md |only R/make_dataframe_to_output.R | 158 ++++++++++++++++++++++------------- inst/CITATION | 2 man/make_alpha_table.Rd | 2 man/make_chisq_test_table.Rd | 17 +-- man/make_dataframe_to_output.Rd | 109 +++++++++++++++++------- man/make_independent_t_test_table.Rd | 19 ++-- man/make_paired_t_test_table.Rd | 26 ++--- 10 files changed, 227 insertions(+), 129 deletions(-)
Title: Inference on Predicted Data
Description: Performs valid statistical inference on predicted data (IPD) using recent methods, where for a subset of the data, the outcomes have been predicted by an algorithm. Provides a wrapper function with specified defaults for the type of model and method to be used for estimation and inference. Further provides methods for tidying and summarizing results. Salerno et al., (2025) <doi:10.1093/bioinformatics/btaf055>.
Author: Stephen Salerno [aut, cre, cph] ,
Jiacheng Miao [aut],
Awan Afiaz [aut],
Kentaro Hoffman [aut],
Jesse Gronsbell [aut],
Jianhui Gao [aut],
David Cheng [aut],
Anna Neufeld [aut],
Qiongshi Lu [aut],
Tyler H McCormick [aut],
Jeffrey T Leek [aut]
Maintainer: Stephen Salerno <ssalerno@fredhutch.org>
Diff between ipd versions 0.1.4 dated 2025-01-07 and 0.4.0 dated 2026-03-06
ipd-0.1.4/ipd/R/helpers.R |only ipd-0.1.4/ipd/man/figures |only ipd-0.4.0/ipd/DESCRIPTION | 34 ipd-0.4.0/ipd/MD5 | 202 +- ipd-0.4.0/ipd/NAMESPACE | 39 ipd-0.4.0/ipd/NEWS.md | 116 + ipd-0.4.0/ipd/R/chen_logistic.R |only ipd-0.4.0/ipd/R/chen_ols.R |only ipd-0.4.0/ipd/R/chen_poisson.R |only ipd-0.4.0/ipd/R/ipd-package.R | 75 ipd-0.4.0/ipd/R/ipd.R | 493 +---- ipd-0.4.0/ipd/R/methods.R | 690 +++---- ipd-0.4.0/ipd/R/pdc_logistic.R |only ipd-0.4.0/ipd/R/pdc_ols.R |only ipd-0.4.0/ipd/R/pdc_poisson.R |only ipd-0.4.0/ipd/R/postpi_analytic_ols.R | 107 - ipd-0.4.0/ipd/R/postpi_boot_logistic.R | 110 - ipd-0.4.0/ipd/R/postpi_boot_ols.R | 201 +- ipd-0.4.0/ipd/R/ppi_a_ols.R |only ipd-0.4.0/ipd/R/ppi_logistic.R | 74 ipd-0.4.0/ipd/R/ppi_mean.R | 43 ipd-0.4.0/ipd/R/ppi_ols.R | 103 - ipd-0.4.0/ipd/R/ppi_plusplus_logistic.R | 216 +- ipd-0.4.0/ipd/R/ppi_plusplus_mean.R | 148 - ipd-0.4.0/ipd/R/ppi_plusplus_ols.R | 174 - ipd-0.4.0/ipd/R/ppi_plusplus_quantile.R | 130 - ipd-0.4.0/ipd/R/ppi_quantile.R | 71 ipd-0.4.0/ipd/R/pspa_logistic.R | 48 ipd-0.4.0/ipd/R/pspa_mean.R | 40 ipd-0.4.0/ipd/R/pspa_ols.R | 48 ipd-0.4.0/ipd/R/pspa_poisson.R | 48 ipd-0.4.0/ipd/R/pspa_quantile.R | 45 ipd-0.4.0/ipd/R/simdat.R | 702 +++---- ipd-0.4.0/ipd/R/utils_chen.R |only ipd-0.4.0/ipd/R/utils_ipd.R |only ipd-0.4.0/ipd/R/utils_ppi.R |only ipd-0.4.0/ipd/R/utils_pspa.R |only ipd-0.4.0/ipd/README.md | 478 +++- ipd-0.4.0/ipd/build/partial.rdb |binary ipd-0.4.0/ipd/build/vignette.rds |binary ipd-0.4.0/ipd/inst/CITATION |only ipd-0.4.0/ipd/inst/doc/ipd.R | 386 ++- ipd-0.4.0/ipd/inst/doc/ipd.Rmd | 609 +++--- ipd-0.4.0/ipd/inst/doc/ipd.html | 2457 +++++++++++++++---------- ipd-0.4.0/ipd/inst/paper.R | 1248 ++++++------ ipd-0.4.0/ipd/man/A.Rd | 10 ipd-0.4.0/ipd/man/Sigma_cal.Rd | 24 ipd-0.4.0/ipd/man/augment.ipd.Rd | 33 ipd-0.4.0/ipd/man/calc_lhat_glm.Rd | 27 ipd-0.4.0/ipd/man/chen_logistic.Rd |only ipd-0.4.0/ipd/man/chen_ols.Rd |only ipd-0.4.0/ipd/man/chen_poisson.Rd |only ipd-0.4.0/ipd/man/compute_cdf.Rd | 11 ipd-0.4.0/ipd/man/compute_cdf_diff.Rd | 13 ipd-0.4.0/ipd/man/dot-build_design.Rd |only ipd-0.4.0/ipd/man/dot-drop_unused_levels.Rd |only ipd-0.4.0/ipd/man/dot-parse_inputs.Rd |only ipd-0.4.0/ipd/man/dot-warn_differing_levels.Rd |only ipd-0.4.0/ipd/man/est_ini.Rd | 11 ipd-0.4.0/ipd/man/glance.ipd.Rd | 26 ipd-0.4.0/ipd/man/ipd-class.Rd |only ipd-0.4.0/ipd/man/ipd-package.Rd | 80 ipd-0.4.0/ipd/man/ipd.Rd | 130 - ipd-0.4.0/ipd/man/link_Hessian.Rd | 4 ipd-0.4.0/ipd/man/link_grad.Rd | 4 ipd-0.4.0/ipd/man/log1pexp.Rd | 45 ipd-0.4.0/ipd/man/logistic_get_stats.Rd | 23 ipd-0.4.0/ipd/man/mean_psi.Rd | 10 ipd-0.4.0/ipd/man/mean_psi_pop.Rd | 24 ipd-0.4.0/ipd/man/ols.Rd | 13 ipd-0.4.0/ipd/man/ols_get_stats.Rd | 23 ipd-0.4.0/ipd/man/optim_est.Rd | 24 ipd-0.4.0/ipd/man/optim_weights.Rd | 25 ipd-0.4.0/ipd/man/pdc_logistic.Rd |only ipd-0.4.0/ipd/man/pdc_ols.Rd |only ipd-0.4.0/ipd/man/pdc_poisson.Rd |only ipd-0.4.0/ipd/man/postpi_analytic_ols.Rd | 26 ipd-0.4.0/ipd/man/postpi_boot_logistic.Rd | 127 - ipd-0.4.0/ipd/man/postpi_boot_ols.Rd | 24 ipd-0.4.0/ipd/man/ppi_a_ols.Rd |only ipd-0.4.0/ipd/man/ppi_logistic.Rd | 146 - ipd-0.4.0/ipd/man/ppi_mean.Rd | 97 ipd-0.4.0/ipd/man/ppi_ols.Rd | 18 ipd-0.4.0/ipd/man/ppi_plusplus_logistic.Rd | 202 +- ipd-0.4.0/ipd/man/ppi_plusplus_logistic_est.Rd | 164 - ipd-0.4.0/ipd/man/ppi_plusplus_mean.Rd | 152 - ipd-0.4.0/ipd/man/ppi_plusplus_mean_est.Rd | 134 - ipd-0.4.0/ipd/man/ppi_plusplus_ols.Rd | 194 + ipd-0.4.0/ipd/man/ppi_plusplus_ols_est.Rd | 156 - ipd-0.4.0/ipd/man/ppi_plusplus_quantile.Rd | 136 - ipd-0.4.0/ipd/man/ppi_plusplus_quantile_est.Rd | 126 - ipd-0.4.0/ipd/man/ppi_quantile.Rd | 106 - ipd-0.4.0/ipd/man/print.ipd.Rd | 31 ipd-0.4.0/ipd/man/print.summary.ipd.Rd | 33 ipd-0.4.0/ipd/man/psi.Rd | 12 ipd-0.4.0/ipd/man/pspa_logistic.Rd | 15 ipd-0.4.0/ipd/man/pspa_mean.Rd | 13 ipd-0.4.0/ipd/man/pspa_ols.Rd | 15 ipd-0.4.0/ipd/man/pspa_poisson.Rd | 15 ipd-0.4.0/ipd/man/pspa_quantile.Rd | 11 ipd-0.4.0/ipd/man/pspa_y.Rd | 43 ipd-0.4.0/ipd/man/rectified_cdf.Rd | 15 ipd-0.4.0/ipd/man/rectified_p_value.Rd | 15 ipd-0.4.0/ipd/man/reexports.Rd | 84 ipd-0.4.0/ipd/man/show-ipd-method.Rd |only ipd-0.4.0/ipd/man/sim_data_y.Rd | 2 ipd-0.4.0/ipd/man/simdat.Rd | 49 ipd-0.4.0/ipd/man/summary.ipd.Rd | 45 ipd-0.4.0/ipd/man/tidy.ipd.Rd | 27 ipd-0.4.0/ipd/man/wls.Rd | 15 ipd-0.4.0/ipd/man/zconfint_generic.Rd | 13 ipd-0.4.0/ipd/man/zstat_generic.Rd | 77 ipd-0.4.0/ipd/tests/spelling.R | 9 ipd-0.4.0/ipd/vignettes/ipd.Rmd | 609 +++--- ipd-0.4.0/ipd/vignettes/ipd.md |only 115 files changed, 6797 insertions(+), 5854 deletions(-)
Title: Robust Probabilistic Matching for German Company Names
Description: A pipeline for matching messy company name strings against a clean dictionary (e.g., 'Orbis').
Implements a cascading strategy: Exact -> Fuzzy ('zoomerjoin') -> 'FTS5' ('SQLite') -> Rarity Weighted.
References: Beniamino Green (2025) <https://beniamino.org/zoomerjoin/>; <https://www.sqlite.org/fts5.html>.
Author: Giulian Etingin-Frati [aut, cre]
Maintainer: Giulian Etingin-Frati <etingin-frati@kof.ethz.ch>
Diff between firmmatchr versions 0.1.2 dated 2026-02-11 and 0.1.3 dated 2026-03-06
DESCRIPTION | 8 LICENSE | 4 MD5 | 39 ++-- NAMESPACE | 70 +++---- NEWS.md | 51 +++-- R/engines.R | 342 +++++++++++++++++++------------------- R/globals.R | 18 +- R/llm_api.R | 343 +++++++++++++++++++++++++------------- R/llm_pipeline.R | 353 +++++++++++++++++++++------------------- R/match_pipeline.R | 346 +++++++++++++++++++-------------------- R/normalize.R | 132 +++++++------- README.md | 282 +++++++++++++++---------------- inst/WORDLIST | 6 man/azure_chat_request.Rd | 70 +++---- man/match_companies.Rd | 146 ++++++++-------- man/normalize_company_name.Rd | 54 +++--- man/openai_chat_request.Rd |only man/validate_matches_llm.Rd | 131 +++++++------- tests/testthat.R | 8 tests/testthat/test-match.R | 68 +++---- tests/testthat/test-normalize.R | 30 +-- 21 files changed, 1325 insertions(+), 1176 deletions(-)
Title: Primary Event Censored Distributions
Description: Provides functions for working with primary
event censored distributions and 'Stan' implementations for use in Bayesian
modeling. Primary event censored distributions are useful for modeling
delayed reporting scenarios in epidemiology and other fields (Charniga et
al. (2024) <doi:10.48550/arXiv.2405.08841>). It also provides support for
arbitrary delay distributions, a range of common primary distributions, and
allows for truncation and secondary event censoring to be accounted for
(Park et al. (2024) <doi:10.1101/2024.01.12.24301247>). A subset of
common distributions also have analytical solutions implemented, allowing
for faster computation. In addition, it provides multiple methods for
fitting primary event censored distributions to data via optional
dependencies.
Author: Sam Abbott [aut, cre, cph] ,
Sam Brand [aut] ,
Adam Howes [ctb] ,
James Mba Azam [aut] ,
Carl Pearson [aut] ,
Sebastian Funk [aut] ,
Kelly Charniga [aut]
Maintainer: Sam Abbott <contact@samabbott.co.uk>
Diff between primarycensored versions 1.3.0 dated 2025-12-01 and 1.4.0 dated 2026-03-06
primarycensored-1.3.0/primarycensored/man/dot-name_deprecation.Rd |only primarycensored-1.4.0/primarycensored/DESCRIPTION | 10 primarycensored-1.4.0/primarycensored/MD5 | 133 ++-- primarycensored-1.4.0/primarycensored/NAMESPACE | 2 primarycensored-1.4.0/primarycensored/NEWS.md | 29 primarycensored-1.4.0/primarycensored/R/check.R | 49 + primarycensored-1.4.0/primarycensored/R/dprimarycensored.R | 104 ++- primarycensored-1.4.0/primarycensored/R/fitdistdoublecens.R | 106 +-- primarycensored-1.4.0/primarycensored/R/pcd-stan-tools.R | 169 +++++ primarycensored-1.4.0/primarycensored/R/pcd_cmdstan_model.R | 19 primarycensored-1.4.0/primarycensored/R/pcens.R | 10 primarycensored-1.4.0/primarycensored/R/pcens_quantile.R | 17 primarycensored-1.4.0/primarycensored/R/pprimarycensored.R | 103 ++- primarycensored-1.4.0/primarycensored/R/primarycensored-package.R | 5 primarycensored-1.4.0/primarycensored/R/qprimarycensored.R | 18 primarycensored-1.4.0/primarycensored/R/rprimarycensored.R | 55 + primarycensored-1.4.0/primarycensored/R/utils.R | 41 - primarycensored-1.4.0/primarycensored/README.md | 6 primarycensored-1.4.0/primarycensored/build/vignette.rds |binary primarycensored-1.4.0/primarycensored/data/pcd_distributions.rda |binary primarycensored-1.4.0/primarycensored/inst/WORDLIST | 7 primarycensored-1.4.0/primarycensored/inst/doc/analytic-solutions.Rmd | 2 primarycensored-1.4.0/primarycensored/inst/doc/analytic-solutions.html | 8 primarycensored-1.4.0/primarycensored/inst/doc/primarycensored.Rmd | 14 primarycensored-1.4.0/primarycensored/inst/doc/primarycensored.html | 31 - primarycensored-1.4.0/primarycensored/inst/doc/why-it-works.Rmd | 2 primarycensored-1.4.0/primarycensored/inst/doc/why-it-works.html | 10 primarycensored-1.4.0/primarycensored/inst/stan/functions/expgrowth.stan | 61 +- primarycensored-1.4.0/primarycensored/inst/stan/functions/primarycensored.stan | 293 +++++++--- primarycensored-1.4.0/primarycensored/inst/stan/functions/primarycensored_analytical_cdf.stan | 82 +- primarycensored-1.4.0/primarycensored/inst/stan/functions/primarycensored_ode.stan | 63 +- primarycensored-1.4.0/primarycensored/inst/stan/pcens_model.stan | 14 primarycensored-1.4.0/primarycensored/man/check_pdist.Rd | 7 primarycensored-1.4.0/primarycensored/man/dot-check_truncation_bounds.Rd |only primarycensored-1.4.0/primarycensored/man/dot-check_truncation_bounds_df.Rd |only primarycensored-1.4.0/primarycensored/man/dot-dpcens.Rd | 6 primarycensored-1.4.0/primarycensored/man/dot-normalise_cdf.Rd | 10 primarycensored-1.4.0/primarycensored/man/dprimarycensored.Rd | 53 - primarycensored-1.4.0/primarycensored/man/fitdistdoublecens.Rd | 22 primarycensored-1.4.0/primarycensored/man/new_pcens.Rd | 17 primarycensored-1.4.0/primarycensored/man/pcd_as_stan_data.Rd | 10 primarycensored-1.4.0/primarycensored/man/pcd_load_stan_functions.Rd | 9 primarycensored-1.4.0/primarycensored/man/pcd_stan_dist_id.Rd | 1 primarycensored-1.4.0/primarycensored/man/pcd_stan_files.Rd | 1 primarycensored-1.4.0/primarycensored/man/pcd_stan_function_deps.Rd |only primarycensored-1.4.0/primarycensored/man/pcd_stan_functions.Rd | 1 primarycensored-1.4.0/primarycensored/man/pcd_stan_path.Rd | 1 primarycensored-1.4.0/primarycensored/man/pcens_quantile.Rd | 12 primarycensored-1.4.0/primarycensored/man/pcens_quantile.default.Rd | 14 primarycensored-1.4.0/primarycensored/man/pprimarycensored.Rd | 52 - primarycensored-1.4.0/primarycensored/man/qprimarycensored.Rd | 23 primarycensored-1.4.0/primarycensored/man/rprimarycensored.Rd | 35 - primarycensored-1.4.0/primarycensored/tests/testthat/Rplots.pdf |binary primarycensored-1.4.0/primarycensored/tests/testthat/test-dprimarycensored.R | 175 +++++ primarycensored-1.4.0/primarycensored/tests/testthat/test-expgrowth.R | 68 ++ primarycensored-1.4.0/primarycensored/tests/testthat/test-fitdistdoublecens.R | 178 ++---- primarycensored-1.4.0/primarycensored/tests/testthat/test-pcd-stan-tools.R | 92 +++ primarycensored-1.4.0/primarycensored/tests/testthat/test-pcens_cdf.R | 56 - primarycensored-1.4.0/primarycensored/tests/testthat/test-pprimarycensored.R | 110 +++ primarycensored-1.4.0/primarycensored/tests/testthat/test-qprimarycensored.R | 60 ++ primarycensored-1.4.0/primarycensored/tests/testthat/test-rpd-primarycensored.R | 100 +++ primarycensored-1.4.0/primarycensored/tests/testthat/test-rprimarycensored.R | 66 ++ primarycensored-1.4.0/primarycensored/tests/testthat/test-stan-dist_lcdf.R |only primarycensored-1.4.0/primarycensored/tests/testthat/test-stan-expgrowth.R | 48 + primarycensored-1.4.0/primarycensored/tests/testthat/test-stan-primarycensored_analytical_cdf.R | 6 primarycensored-1.4.0/primarycensored/tests/testthat/test-stan-primarycensored_ode.R | 6 primarycensored-1.4.0/primarycensored/tests/testthat/test-stan-rpd-primarycensored.R | 162 +++++ primarycensored-1.4.0/primarycensored/vignettes/analytic-solutions.Rmd | 2 primarycensored-1.4.0/primarycensored/vignettes/primarycensored.Rmd | 14 primarycensored-1.4.0/primarycensored/vignettes/why-it-works.Rmd | 2 70 files changed, 2093 insertions(+), 789 deletions(-)
More information about primarycensored at CRAN
Permanent link
Title: Efficient Computation of Ordinary and Generalised Poisson
Binomial Distributions
Description: Efficient implementations of multiple exact and approximate methods
as described in Hong (2013) <doi:10.1016/j.csda.2012.10.006>, Biscarri, Zhao &
Brunner (2018) <doi:10.1016/j.csda.2018.01.007> and Zhang, Hong & Balakrishnan
(2018) <doi:10.1080/00949655.2018.1440294> for computing the probability mass,
cumulative distribution and quantile functions, as well as generating random
numbers for both the ordinary and generalised Poisson binomial distribution.
Author: Florian Junge [aut, cre]
Maintainer: Florian Junge <florian.junge@mailbox.org>
Diff between PoissonBinomial versions 1.2.7 dated 2024-09-17 and 1.2.8 dated 2026-03-06
DESCRIPTION | 31 MD5 | 48 NEWS.md | 12 R/PoissonBinomial.R | 90 - R/gpbinom.R | 412 +++-- R/pbinom.R | 526 +++--- R/utility.R | 47 build/partial.rdb |binary build/vignette.rds |binary inst/doc/intro.R | 176 +- inst/doc/intro.html | 1681 ++++++++++----------- inst/doc/proc_approx.R | 584 +++---- inst/doc/proc_approx.Rmd | 776 +++++----- inst/doc/proc_approx.html | 2529 ++++++++++++++++----------------- inst/doc/proc_exact.R | 284 +-- inst/doc/proc_exact.Rmd | 452 ++--- inst/doc/proc_exact.html | 1997 +++++++++++++------------- inst/doc/use_with_rcpp.R | 12 inst/doc/use_with_rcpp.html | 934 ++++++------ man/GenPoissonBinomial-Distribution.Rd | 40 man/PoissonBinomial-Distribution.Rd | 22 man/PoissonBinomial-package.Rd | 25 src/RcppExports.cpp | 54 vignettes/proc_approx.Rmd | 776 +++++----- vignettes/proc_exact.Rmd | 452 ++--- 25 files changed, 6063 insertions(+), 5897 deletions(-)
More information about PoissonBinomial at CRAN
Permanent link
Title: Quick Indexation
Description: Quick indexation of any type of vector or of any combination of those. Indexation turns a vector into an integer vector going from 1 to the number of unique elements. Indexes are important building blocks for many algorithms. The method is described at <https://github.com/lrberge/indexthis/>.
Author: Laurent Berge [aut, cre],
Sebastian Krantz [ctb],
Morgan Jacob [ctb]
Maintainer: Laurent Berge <laurent.berge@u-bordeaux.fr>
Diff between indexthis versions 2.1.0 dated 2025-04-18 and 2.2.0 dated 2026-03-06
DESCRIPTION | 6 +- MD5 | 14 ++--- NEWS.md | 5 ++ R/to_index.R | 6 ++ README.md | 4 - inst/vendor/to_index.R | 5 +- inst/vendor/to_index.cpp | 87 +++++++++++++++++++++++-------------- src/to_index.cpp | 110 ++++++++++++++++++++++++++++++----------------- 8 files changed, 155 insertions(+), 82 deletions(-)
Title: Extension to 'ggplot2' for Plotting Stats
Description: Provides new statistics, new geometries and new positions for
'ggplot2' and a suite of functions to facilitate the creation of
statistical plots.
Author: Joseph Larmarange [aut, cre]
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between ggstats versions 0.12.0 dated 2025-12-22 and 0.13.0 dated 2026-03-06
DESCRIPTION | 6 - MD5 | 26 +++--- NAMESPACE | 1 NEWS.md | 12 ++ R/ggcoef_model.R | 16 ++- R/gglikert.R | 176 ++++++++++++++++++++++++++++++++++++++++- R/position_likert.R | 2 README.md | 20 ++-- inst/doc/gglikert.R | 14 +++ inst/doc/gglikert.Rmd | 23 ++++- inst/doc/gglikert.html | 156 +++++++++++++++++++----------------- man/gglikert.Rd | 61 +++++++++++++- tests/testthat/test-gglikert.R | 78 ++++++++++++++++++ vignettes/gglikert.Rmd | 23 ++++- 14 files changed, 498 insertions(+), 116 deletions(-)
Title: Diagnosis Performance Using Attributable Fraction
Description: Estimate diagnosis performance (Sensitivity, Specificity,
Positive predictive value, Negative predicted value) of a diagnostic test
where can not measure the golden standard but can estimate it using the
attributable fraction.
Author: John J. Aponte [aut, cre] ,
Orvalho Augusto [aut]
Maintainer: John J. Aponte <john.j.aponte@gmail.com>
Diff between afdx versions 1.1.1 dated 2021-05-25 and 1.1.2 dated 2026-03-06
DESCRIPTION | 15 MD5 | 27 - NEWS.md | 46 + README.md | 4 build/vignette.rds |binary inst/WORDLIST | 6 inst/doc/af_logit_exponential.R | 6 inst/doc/af_logit_exponential.Rmd | 2 inst/doc/af_logit_exponential.html | 767 +++++++++++++++++++++++++------ inst/doc/latentclass.R | 68 +- inst/doc/latentclass.Rmd | 8 inst/doc/latentclass.html | 899 ++++++++++++++++++++++++++++--------- man/figures |only vignettes/af_logit_exponential.Rmd | 2 vignettes/latentclass.Rmd | 8 15 files changed, 1422 insertions(+), 436 deletions(-)
Title: Tests Based on Ordinal Patterns
Description: Ordinal patterns describe the dynamics of a time series by looking at the ranks of subsequent observations. By comparing ordinal patterns of two times series, Schnurr (2014) <doi:10.1007/s00362-013-0536-8> defines a robust and non-parametric dependence measure: the ordinal pattern coefficient. Functions to calculate this and a method to detect a change in the pattern coefficient proposed in Schnurr and Dehling (2017) <doi:10.1080/01621459.2016.1164706> are provided. Furthermore, the package contains a function for calculating the ordinal pattern frequencies. Generalized ordinal patterns as proposed by Schnurr and Fischer (2022) <doi:10.1016/j.csda.2022.107472> are also considered.
Author: Alexander Duerre [aut],
Svenja Fischer [ctb],
Alexander Schnurr [aut],
Angelika Silbernagel [aut, cre]
Maintainer: Angelika Silbernagel <silbernagel@hsu-hh.de>
Diff between ordinalpattern versions 0.2.7 dated 2025-05-12 and 0.2.8 dated 2026-03-06
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/Pattern.R | 5 +++-- 3 files changed, 9 insertions(+), 8 deletions(-)
More information about ordinalpattern at CRAN
Permanent link
Title: Distributed Laplace Factor Model
Description: Distributed estimation method is based on a Laplace factor model
to solve the estimates of load and specific variance. The philosophy of
the package is described in Guangbao Guo. (2022).
<doi:10.1007/s00180-022-01270-z>.
Author: Guangbao Guo [aut, cre],
Siqi Liu [aut]
Maintainer: Guangbao Guo <ggb11111111@163.com>
Diff between DLFM versions 0.2.2 dated 2026-01-26 and 0.2.3 dated 2026-03-06
DESCRIPTION | 9 +++++---- MD5 | 36 +++++++++++++++++++++++++++++++++++- data |only man/Australian.Rd |only man/Breast.Rd |only man/Heart.Rd |only man/Iris.Rd |only man/Sonar.Rd |only man/Wine.Rd |only man/bankruptcy.Rd |only man/concrete.Rd |only man/ionosphere.Rd |only man/new_energy_vehicle.Rd |only man/protein.Rd |only man/review.Rd |only man/riboflavin.Rd |only man/riboflavinv100.Rd |only man/vehicle.Rd |only man/wholesale.Rd |only man/yacht_hydrodynamics.Rd |only 20 files changed, 40 insertions(+), 5 deletions(-)
Title: Penalized Transformation Models
Description: Partially penalized versions of specific transformation models
implemented in package 'mlt'. Available models include a fully parametric version
of the Cox model, other parametric survival models (Weibull, etc.), models for
binary and ordered categorical variables, normal and transformed-normal (Box-Cox type)
linear models, and continuous outcome logistic regression. Hyperparameter tuning
is facilitated through model-based optimization functionalities from package 'mlrMBO'.
The accompanying vignette describes the methodology used in 'tramnet' in detail.
Transformation models and model-based optimization are described in
Hothorn et al. (2019) <doi:10.1111/sjos.12291> and
Bischl et al. (2016) <doi:10.48550/arXiv.1703.03373>, respectively.
Author: Lucas Kook [cre, aut],
Balint Tamasi [ctb],
Sandra Siegfried [ctb],
Samuel Pawel [ctb],
Torsten Hothorn [ctb]
Maintainer: Lucas Kook <lucasheinrich.kook@gmail.com>
Diff between tramnet versions 0.0-10 dated 2025-11-18 and 0.0-99 dated 2026-03-06
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- R/cvl_tramnet.R | 3 +-- R/tramnet.R | 15 +++++++++++++-- inst/doc/tramnet.pdf |binary man/coef.tramnet_Lm.Rd | 4 ++-- man/tramnet.Rd | 2 +- vignettes/kook-hothorn.bib | 2 +- 8 files changed, 31 insertions(+), 21 deletions(-)
Title: Bindings to the 'HarfBuzz' and 'Fribidi' Libraries for Text
Shaping
Description: Provides access to the text shaping functionality in the
'HarfBuzz' library and the bidirectional algorithm in the 'Fribidi'
library. 'textshaping' is a low-level utility package mainly for
graphic devices that expands upon the font tool-set provided by the
'systemfonts' package.
Author: Thomas Lin Pedersen [cre, aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between textshaping versions 1.0.4 dated 2025-10-10 and 1.0.5 dated 2026-03-06
DESCRIPTION | 6 +++--- MD5 | 19 ++++++++++--------- NEWS.md | 6 +++++- R/cpp11.R | 4 ++++ R/zzz.R |only configure | 2 ++ src/cpp11.cpp | 14 +++++++++++--- src/string_metrics.cpp | 4 ++++ src/string_metrics.h | 2 ++ src/string_shape.cpp | 39 +++++++++++++++++++++------------------ src/string_shape.h | 9 +++------ 11 files changed, 65 insertions(+), 40 deletions(-)
Title: Transcription Elongation Profiling
Description: The general principle relies on calculating the cumulative signal of nascent
RNA sequencing over the gene body of any given gene or transcription unit.
'tepr' can identify transcription attenuation sites by comparing profile to
a null model which assumes uniform read density over the entirety of the
transcription unit. It can also identify increased or diminished
transcription attenuation by comparing two conditions. Besides rigorous
statistical testing and high sensitivity, a major feature of 'tepr' is its
ability to provide the elongation pattern of each individual gene, including
the position of the main attenuation point when such a phenomenon occurs.
Using 'tepr', users can visualize and refine genome-wide aggregated analyses
of elongation patterns to robustly identify effects specific to subsets of
genes. These metrics are suitable for internal comparisons (between genes in
each condition) and for studying elongation of the same gene in different
conditions or comparing it to a p [...truncated...]
Author: Nicolas Descostes [cre],
Victor Billon [aut],
Gael Cristofari [aut]
Maintainer: Nicolas Descostes <nicolas.descostes@gmail.com>
Diff between tepr versions 1.1.14 dated 2026-01-28 and 1.1.15 dated 2026-03-06
DESCRIPTION | 8 +- MD5 | 20 ++--- NAMESPACE | 3 NEWS | 7 ++ R/preprocessing-blacklisthighmap-utils.R | 84 ++++++++++++++---------- R/preprocessing-blacklisthighmap.R | 35 ++++++---- R/preprocessing-makewindows.R | 106 ++++++++++++------------------- R/preprocessing.R | 3 inst/doc/tepr.html | 52 +++++++++------ man/makewindows.Rd | 8 +- man/preprocessing.Rd | 3 11 files changed, 178 insertions(+), 151 deletions(-)
Title: Graphic Devices Based on AGG
Description: Anti-Grain Geometry (AGG) is a high-quality and
high-performance 2D drawing library. The 'ragg' package provides a set
of graphic devices based on AGG to use as alternative to the raster
devices provided through the 'grDevices' package.
Author: Thomas Lin Pedersen [cre, aut] ,
Maxim Shemanarev [aut, cph] ,
Tony Juricic [ctb, cph] ,
Milan Marusinec [ctb, cph] ,
Spencer Garrett [ctb] ,
Posit Software, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between ragg versions 1.5.0 dated 2025-09-02 and 1.5.1 dated 2026-03-06
DESCRIPTION | 8 MD5 | 53 ++--- NEWS.md | 11 + R/agg_dev.R | 6 configure | 3 man/agg_webp_anim.Rd | 2 man/ragg-package.Rd | 2 src/AggDevice.h | 10 - src/AggDeviceCapture.h | 8 src/AggDeviceWebPAnim.h | 88 ++++----- src/agg/include/agg_basics.h | 4 src/agg/include/agg_color_gray.h | 20 +- src/agg/include/agg_color_rgba.h | 16 - src/agg/include/agg_ellipse.h | 2 src/agg/include/agg_gradient_lut.h | 4 src/agg/include/agg_image_filters.h | 6 src/agg/include/agg_path_storage.h | 6 src/agg/include/agg_path_storage_integer.h | 12 - src/agg/include/agg_pixfmt_base.h | 2 src/agg/include/agg_rasterizer_scanline_aa.h | 2 src/agg/include/agg_rasterizer_sl_clip.h | 22 +- src/agg/include/agg_span_gradient.h | 42 ++-- src/agg/include/agg_span_image_filter.h | 4 src/agg/include/agg_span_interpolator_linear.h | 16 - src/agg/src/agg_vcgen_stroke.cpp | 4 src/init_device.h | 10 - src/text_renderer.h | 236 ++++++++++++++++--------- tests/testthat/test-rng-state.R |only 28 files changed, 356 insertions(+), 243 deletions(-)
Title: Normalize and Match City Names to NUTS Regions
Description: Normalizes city names for EEA countries and matches them to NUTS 3 regions using provided crosswalks. Features include comprehensive normalization rules, cascading matching logic (Exact NUTS -> Exact LAU -> Fuzzy), and single-source data synthesis. The package implements the NUTS classification as described in the NUTS methodology (Eurostat (2021) <https://ec.europa.eu/eurostat/web/nuts>).
Author: Giulian Etingin-Frati [aut, cre]
Maintainer: Giulian Etingin-Frati <etingin-frati@kof.ethz.ch>
Diff between placematchr versions 0.2.3 dated 2026-02-11 and 0.2.4 dated 2026-03-06
DESCRIPTION | 12 - LICENSE | 4 MD5 | 30 +- NAMESPACE | 6 R/data.R | 318 ++++++++++++++--------------- R/generate_fake_cities.R | 68 +++--- R/match_city.R | 386 ++++++++++++++++++------------------ README.md | 107 +++++---- inst/WORDLIST | 4 man/generate_fake_cities.Rd | 52 ++-- man/lau_data.Rd | 368 +++++++++++++++++----------------- man/match_city.Rd | 62 ++--- man/normalize_city.Rd | 54 ++--- man/nuts_data.Rd | 362 ++++++++++++++++----------------- tests/testthat.R | 8 tests/testthat/test-normalization.R | 56 ++--- 16 files changed, 949 insertions(+), 948 deletions(-)
Title: Survival Distributions with Piece-Wise Constant Hazards
Description: Density, distribution function, ... hazard function, cumulative
hazard function, survival function for survival distributions with
piece-wise constant hazards and multiple states and methods to plot and
summarise those distributions.
A derivation of the used algorithms can be found in my masters thesis
<doi:10.25365/thesis.76098>.
Author: Tobias Fellinger [aut, cre] ,
Florian Klinglmueller [aut]
Maintainer: Tobias Fellinger <tobias.fellinger@ages.at>
Diff between miniPCH versions 0.4.0 dated 2024-10-31 and 0.4.1 dated 2026-03-06
DESCRIPTION | 19 +++++++++++-------- MD5 | 10 +++++----- NEWS.md | 4 ++++ src/RcppExports.cpp | 12 ++++++------ tests/testthat/test-autoplot.R | 9 +++++++-- tests/testthat/test-plotting.R | 8 ++++++-- 6 files changed, 39 insertions(+), 23 deletions(-)
Title: Multivariate Data Analysis for Chemometrics
Description: Projection based methods for preprocessing, exploring and analysis of multivariate data used in chemometrics. S. Kucheryavskiy (2020) <doi:10.1016/j.chemolab.2020.103937>.
Author: Sergey Kucheryavskiy [aut, cre]
Maintainer: Sergey Kucheryavskiy <svkucheryavski@gmail.com>
Diff between mdatools versions 0.14.2 dated 2024-08-19 and 0.15.0 dated 2026-03-06
mdatools-0.14.2/mdatools/man/pls.simplsold.Rd |only mdatools-0.15.0/mdatools/DESCRIPTION | 22 mdatools-0.15.0/mdatools/MD5 | 476 +- mdatools-0.15.0/mdatools/NAMESPACE | 85 mdatools-0.15.0/mdatools/NEWS.md | 83 mdatools-0.15.0/mdatools/R/classmodel.R | 12 mdatools-0.15.0/mdatools/R/classres.R | 67 mdatools-0.15.0/mdatools/R/constraints.R | 29 mdatools-0.15.0/mdatools/R/crossval.R | 19 mdatools-0.15.0/mdatools/R/ddsimca.R |only mdatools-0.15.0/mdatools/R/ddsimcares.R |only mdatools-0.15.0/mdatools/R/defaults.R | 192 - mdatools-0.15.0/mdatools/R/ipls.R | 103 mdatools-0.15.0/mdatools/R/ldecomp.R | 302 + mdatools-0.15.0/mdatools/R/mcr.R | 21 mdatools-0.15.0/mdatools/R/mcrals.R | 111 mdatools-0.15.0/mdatools/R/mcrpure.R | 66 mdatools-0.15.0/mdatools/R/mdaplot.R | 142 mdatools-0.15.0/mdatools/R/mdaplotg.R | 44 mdatools-0.15.0/mdatools/R/misc.R | 369 + mdatools-0.15.0/mdatools/R/pca.R | 809 +++- mdatools-0.15.0/mdatools/R/pcares.R | 179 mdatools-0.15.0/mdatools/R/plotseries.R | 88 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mdatools-0.15.0/mdatools/man/selectCompNum.pls.Rd | 8 mdatools-0.15.0/mdatools/man/selratio.Rd | 8 mdatools-0.15.0/mdatools/man/setDistanceLimits.Rd | 2 mdatools-0.15.0/mdatools/man/setDistanceLimits.pca.Rd | 4 mdatools-0.15.0/mdatools/man/setDistanceLimits.pls.Rd | 6 mdatools-0.15.0/mdatools/man/setParams.Rd |only mdatools-0.15.0/mdatools/man/setParams.ddsimca.Rd |only mdatools-0.15.0/mdatools/man/showDistanceLimits.Rd | 2 mdatools-0.15.0/mdatools/man/simca.Rd | 12 mdatools-0.15.0/mdatools/man/simcam.Rd | 12 mdatools-0.15.0/mdatools/man/simcamres.Rd | 8 mdatools-0.15.0/mdatools/man/simcares.Rd | 5 mdatools-0.15.0/mdatools/man/summary.ddsimca.Rd |only mdatools-0.15.0/mdatools/man/summary.ddsimcares.Rd |only mdatools-0.15.0/mdatools/man/summary.ipls.Rd | 2 mdatools-0.15.0/mdatools/man/summary.ldecomp.Rd | 2 mdatools-0.15.0/mdatools/man/summary.pls.Rd | 2 mdatools-0.15.0/mdatools/man/summary.prepmodel.Rd |only mdatools-0.15.0/mdatools/man/summary.regcoeffs.Rd | 2 mdatools-0.15.0/mdatools/man/vipscores.Rd | 27 mdatools-0.15.0/mdatools/man/writeCSV.Rd |only mdatools-0.15.0/mdatools/man/writeCSV.ddsimcares.Rd |only mdatools-0.15.0/mdatools/man/writeCSV.pcares.Rd |only mdatools-0.15.0/mdatools/man/writeCSV.plsres.Rd |only mdatools-0.15.0/mdatools/man/writeJSON.Rd |only mdatools-0.15.0/mdatools/man/writeJSON.ddsimca.Rd |only mdatools-0.15.0/mdatools/man/writeJSON.pca.Rd |only mdatools-0.15.0/mdatools/man/writeJSON.pls.Rd |only mdatools-0.15.0/mdatools/man/writeJSON.prepmodel.Rd |only 296 files changed, 5621 insertions(+), 2142 deletions(-)
Title: Generating Features for a Cohort
Description: An R interface for generating features for a cohort using data in the Common Data Model. Features can be constructed using default or custom made feature definitions. Furthermore it's possible to aggregate features and get the summary statistics.
Author: Martijn Schuemie [aut],
Marc Suchard [aut],
Patrick Ryan [aut],
Jenna Reps [aut],
Anthony Sena [aut],
Ger Inberg [aut, cre],
Observational Health Data Science and Informatics [cph]
Maintainer: Ger Inberg <g.inberg@erasmusmc.nl>
Diff between FeatureExtraction versions 3.12.0 dated 2025-10-28 and 3.13.0 dated 2026-03-06
DESCRIPTION | 10 MD5 | 82 +- NEWS.md | 12 R/Aggregation.R | 2 R/CompareCohorts.R | 2 R/CovariateData.R | 2 R/DefaultCovariateSettings.R | 2 R/DefaultTemporalCovariateSettings.R | 2 R/DefaultTemporalSequenceCovariateSettings.R | 2 R/DetailedCovariateSettings.R | 2 R/FeatureExtraction.R | 2 R/GetCovariates.R | 189 ++++++ R/GetCovariatesFromCohortAttributes.R | 2 R/GetCovariatesFromOtherCohorts.R | 25 R/GetDefaultCovariates.R | 344 ++++++++---- R/HelperFunctions.R | 2 R/Normalization.R | 2 R/Table1.R | 2 R/UnitTestHelperFunctions.R | 6 build/vignette.rds |binary inst/doc/CreatingCovariatesBasedOnOtherCohorts.pdf |binary inst/doc/CreatingCovariatesUsingCohortAttributes.pdf |binary inst/doc/CreatingCustomCovariateBuilders.pdf |binary inst/doc/CreatingCustomCovariateBuildersKorean.pdf |binary inst/doc/UsingFeatureExtraction.pdf |binary inst/doc/UsingFeatureExtractionKorean.pdf |binary inst/sql/sql_server/CreateExportTables.sql |only inst/sql/sql_server/DemographicsTime.sql | 12 inst/sql/sql_server/DropExportTables.sql |only inst/sql/sql_server/GetAttrCovariates.sql | 2 inst/sql/sql_server/GetHdpsCovariates.sql | 2 inst/sql/sql_server/IncludeDescendants.sql | 2 inst/sql/sql_server/RemoveCovariateTempTables.sql | 2 java/org/ohdsi/featureExtraction/FeatureExtraction.java | 2 java/org/ohdsi/featureExtraction/ReadCSVFile.java | 2 java/org/ohdsi/featureExtraction/ReadCSVFileWithHeader.java | 2 man/dot-getDbLooCovariateData.Rd | 5 man/getDbCohortBasedCovariatesData.Rd | 22 man/getDbCovariateData.Rd | 38 + man/getDbDefaultCovariateData.Rd | 20 tests/testthat/setup.R | 15 tests/testthat/test-GetDefaultCovariates.R | 19 tests/testthat/test-Table1.R | 1 43 files changed, 624 insertions(+), 214 deletions(-)
More information about FeatureExtraction at CRAN
Permanent link
Title: Parametric and Nonparametric Copula-Based Imputation Methods
Description: Copula-based imputation methods: parametric and nonparametric algorithms for missing multivariate data through conditional copulas.
Author: Francesca Marta Lilja Di Lascio [aut, cre],
Aurora Gatto [aut],
Simone Giannerini [aut]
Maintainer: Francesca Marta Lilja Di Lascio <marta.dilascio@unibz.it>
Diff between CoImp versions 2.1.1 dated 2025-10-17 and 2.2 dated 2026-03-06
ChangeLog | 5 ++ DESCRIPTION | 8 ++-- MD5 | 20 +++++------ NAMESPACE | 2 - R/InternalFunction.R | 87 +++++++++++++++++++++++++++++++++++++++++++++++++++ R/MCAR.R | 9 ++++- R/NPCoImp.R | 11 ++++-- inst/CITATION | 16 ++++----- man/MCAR.Rd | 13 +++++-- man/NPCoImp-class.Rd | 2 - man/NPCoImp.Rd | 27 +++++++++++---- 11 files changed, 160 insertions(+), 40 deletions(-)
Title: Influential Cases in Structural Equation Modeling
Description: Sensitivity analysis in structural equation modeling using
influence measures and diagnostic plots. Support leave-one-out casewise
sensitivity analysis presented by Pek and MacCallum (2011)
<doi:10.1080/00273171.2011.561068> and approximate casewise influence
using scores and casewise likelihood. An introduction to
the package can be found in Cheung and Lai (2026)
<doi:10.1080/00273171.2026.2634293>.
Author: Shu Fai Cheung [aut, cre] ,
Mark Hok Chio Lai [aut]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between semfindr versions 0.1.9 dated 2025-03-03 and 0.2.0 dated 2026-03-06
semfindr-0.1.9/semfindr/inst/doc/casewise_scores.R |only semfindr-0.1.9/semfindr/inst/doc/semfindr.R |only semfindr-0.1.9/semfindr/inst/doc/user_id.R |only semfindr-0.1.9/semfindr/vignettes/semfindr_fit_rerun.RDS |only semfindr-0.1.9/semfindr/vignettes/user_id_fit_rerun.RDS |only semfindr-0.2.0/semfindr/DESCRIPTION | 18 semfindr-0.2.0/semfindr/MD5 | 119 semfindr-0.2.0/semfindr/NEWS.md | 15 semfindr-0.2.0/semfindr/R/est_change.R | 20 semfindr-0.2.0/semfindr/R/est_change_approx.R | 5 semfindr-0.2.0/semfindr/R/est_change_plot.R | 23 semfindr-0.2.0/semfindr/R/est_change_raw.R | 36 semfindr-0.2.0/semfindr/R/est_change_raw_approx.R | 5 semfindr-0.2.0/semfindr/R/est_change_raw_user.R | 10 semfindr-0.2.0/semfindr/R/influence_plot.R | 10 semfindr-0.2.0/semfindr/R/influence_stat.R | 18 semfindr-0.2.0/semfindr/R/print_est_change.R | 6 semfindr-0.2.0/semfindr/README.md | 28 semfindr-0.2.0/semfindr/build/partial.rdb |binary semfindr-0.2.0/semfindr/build/vignette.rds |binary semfindr-0.2.0/semfindr/inst/CITATION |only semfindr-0.2.0/semfindr/inst/doc/casewise_scores.Rmd | 490 +- semfindr-0.2.0/semfindr/inst/doc/casewise_scores.html | 369 - semfindr-0.2.0/semfindr/inst/doc/selecting_cases.Rmd | 13 semfindr-0.2.0/semfindr/inst/doc/selecting_cases.html | 82 semfindr-0.2.0/semfindr/inst/doc/semfindr.Rmd | 2307 +++++----- semfindr-0.2.0/semfindr/inst/doc/semfindr.html | 352 - semfindr-0.2.0/semfindr/inst/doc/user_id.Rmd | 361 - semfindr-0.2.0/semfindr/inst/doc/user_id.html | 294 - semfindr-0.2.0/semfindr/man/est_change.Rd | 17 semfindr-0.2.0/semfindr/man/est_change_approx.Rd | 5 semfindr-0.2.0/semfindr/man/est_change_plot.Rd | 22 semfindr-0.2.0/semfindr/man/est_change_raw.Rd | 31 semfindr-0.2.0/semfindr/man/est_change_raw_approx.Rd | 5 semfindr-0.2.0/semfindr/man/influence_plot.Rd | 7 semfindr-0.2.0/semfindr/man/influence_stat.Rd | 18 semfindr-0.2.0/semfindr/man/print.est_change.Rd | 6 semfindr-0.2.0/semfindr/man/semfindr-package.Rd | 2 semfindr-0.2.0/semfindr/man/user_change_raw.Rd | 7 semfindr-0.2.0/semfindr/vignettes/apa.csl |only semfindr-0.2.0/semfindr/vignettes/articles/multiple_group.Rmd | 4 semfindr-0.2.0/semfindr/vignettes/articles/user_fun-1.png |binary semfindr-0.2.0/semfindr/vignettes/articles/user_fun2-1.png |binary semfindr-0.2.0/semfindr/vignettes/articles/user_function.Rmd | 137 semfindr-0.2.0/semfindr/vignettes/articles/user_function.Rmd.original | 18 semfindr-0.2.0/semfindr/vignettes/casewise_scores.Rmd | 490 +- semfindr-0.2.0/semfindr/vignettes/casewise_scores.Rmd.original |only semfindr-0.2.0/semfindr/vignettes/compare-approx-gcd-1.png |only semfindr-0.2.0/semfindr/vignettes/compare-est-change-1.png |only semfindr-0.2.0/semfindr/vignettes/plot-change-chisq-1.png |only semfindr-0.2.0/semfindr/vignettes/plot-change-rmsea-1.png |only semfindr-0.2.0/semfindr/vignettes/references.bib |only semfindr-0.2.0/semfindr/vignettes/selecting_cases.Rmd | 13 semfindr-0.2.0/semfindr/vignettes/semfindr.Rmd | 2307 +++++----- semfindr-0.2.0/semfindr/vignettes/semfindr.Rmd.original |only semfindr-0.2.0/semfindr/vignettes/semfindr_est_chagne_plot_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_est_change_gcd_plot_approx_std_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_est_change_gcd_plot_approx_std_fig_2-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_est_change_gcd_plot_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_est_change_gcd_plot_fig_2-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_est_change_plot_approx_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_est_change_plot_approx_fig_2-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_est_change_plot_approx_fig_3-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_est_change_plot_fig_2-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_est_change_plot_fig_3-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_gcd_gof_md_plot_approx_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_gcd_gof_md_plot_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_gcd_gof_plot_approx_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_gcd_gof_plot_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_gcd_plot_approx_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_gcd_plot_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_md_plot_approx_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/semfindr_md_plot_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/user_id.Rmd | 361 - semfindr-0.2.0/semfindr/vignettes/user_id.Rmd.original |only semfindr-0.2.0/semfindr/vignettes/user_id_gcd_gof_md_plot_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/user_id_gcd_gof_plot_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/user_id_gcd_plot_fig-1.png |only semfindr-0.2.0/semfindr/vignettes/user_id_md_plot_fig-1.png |only 79 files changed, 4772 insertions(+), 3259 deletions(-)
Title: Access and Analysis of Brazilian CNEFE Address Data
Description: Download, cache and read municipality-level address data from the
Cadastro Nacional de Enderecos para Fins Estatisticos (CNEFE) of the 2022
Brazilian Census, published by the Instituto Brasileiro de Geografia e
Estatistica (IBGE)
<https://ftp.ibge.gov.br/Cadastro_Nacional_de_Enderecos_para_Fins_Estatisticos/>.
Beyond data access, provides spatial aggregation of addresses, computation
of land-use mix indices, and dasymetric interpolation of census tract
variables using CNEFE dwelling points as ancillary data. Results can be
produced on 'H3' hexagonal grids or user-supplied polygons, and heavy
operations leverage a 'DuckDB' backend with extensions for fast,
in-process execution.
Author: Jorge Ubirajara Pedreira Junior [aut, cre, cph] ,
Bruno Mioto [aut],
Kaio Cunha Pedreira [ctb]
Maintainer: Jorge Ubirajara Pedreira Junior <jorge.ubirajara@ufba.br>
Diff between cnefetools versions 0.2.2 dated 2026-02-27 and 0.2.3 dated 2026-03-06
DESCRIPTION | 6 ++-- MD5 | 29 +++++++++++--------- NAMESPACE | 2 + NEWS.md | 18 ++++++++++++ R/build_h3_grid.R | 34 ++++++++++++++++++++++++ R/clear_cache.R |only R/cnefe_counts.R | 30 ++++++++++++++------- R/compute_lumi.R | 32 ++++++++++++++-------- R/tracts_to_h3.R | 19 ++++++++++--- R/utils-internal.R | 45 ++++++++++++++++++++++++++++++++ inst/extdata/cnefe_dictionary_2022.xls |binary man/clear_cache_muni.Rd |only man/clear_cache_tracts.Rd |only man/cnefe_counts.Rd | 5 +++ man/compute_lumi.Rd | 5 +++ tests/testthat/test-compute_lumi.R | 14 +++++++++ tests/testthat/test-test-tracts_to_h3.R | 16 +++++++++++ 17 files changed, 214 insertions(+), 41 deletions(-)
Title: Collection of Utility Functions for Data Analysis and Computing
Description: Provides utility functions for data analysis and computing. Includes functions for logging, parallel processing, and other computational tasks to streamline workflows.
Author: Meng Xu [aut, cre]
Maintainer: Meng Xu <mengxu98@qq.com>
Diff between thisutils versions 0.4.2 dated 2026-02-23 and 0.4.3 dated 2026-03-06
thisutils-0.4.2/thisutils/R/check_r.R |only thisutils-0.4.3/thisutils/DESCRIPTION | 10 - thisutils-0.4.3/thisutils/MD5 | 27 +-- thisutils-0.4.3/thisutils/NAMESPACE | 3 thisutils-0.4.3/thisutils/NEWS.md | 57 ++++--- thisutils-0.4.3/thisutils/R/add_pkg_file.R | 161 ++++++++++++++------- thisutils-0.4.3/thisutils/R/package_management.R |only thisutils-0.4.3/thisutils/R/thisutils-package.R | 2 thisutils-0.4.3/thisutils/R/utils.R | 72 +++++++++ thisutils-0.4.3/thisutils/README.md | 2 thisutils-0.4.3/thisutils/man/add_pkg_file.Rd | 4 thisutils-0.4.3/thisutils/man/check_ci_env.Rd |only thisutils-0.4.3/thisutils/man/check_pkg_status.Rd |only thisutils-0.4.3/thisutils/man/check_r.Rd | 2 thisutils-0.4.3/thisutils/man/is_outlier.Rd |only thisutils-0.4.3/thisutils/man/remove_r.Rd | 2 thisutils-0.4.3/thisutils/man/thisutils-package.Rd | 2 17 files changed, 242 insertions(+), 102 deletions(-)
Title: Stochastic Tree Ensembles (XBART and BART) for Supervised
Learning and Causal Inference
Description: Flexible stochastic tree ensemble software.
Robust implementations of Bayesian Additive Regression Trees (BART)
(Chipman, George, McCulloch (2010) <doi:10.1214/09-AOAS285>)
for supervised learning and Bayesian Causal Forests (BCF)
(Hahn, Murray, Carvalho (2020) <doi:10.1214/19-BA1195>)
for causal inference. Enables model serialization and parallel sampling
and provides a low-level interface for custom stochastic forest samplers.
Includes the grow-from-root algorithm for accelerated forest sampling
(He and Hahn (2021) <doi:10.1080/01621459.2021.1942012>),
a log-linear leaf model for forest-based heteroskedasticity (Murray (2020) <doi:10.1080/01621459.2020.1813587>),
and the cloglog BART model of Alam and Linero (2025) <doi:10.48550/arXiv.2502.00606> for ordinal outcomes.
Author: Drew Herren [aut, cre] ,
Richard Hahn [aut],
Jared Murray [aut],
Carlos Carvalho [aut],
Jingyu He [aut],
Pedro Lima [ctb],
Entejar Alam [ctb],
stochtree contributors [cph],
Eigen contributors [cph] ,
xgboost contributors [cph] ,
treelite contributors [...truncated...]
Maintainer: Drew Herren <drewherrenopensource@gmail.com>
Diff between stochtree versions 0.3.1 dated 2026-02-12 and 0.4.0 dated 2026-03-06
stochtree-0.3.1/stochtree/man/computeForestLeafIndices.Rd |only stochtree-0.3.1/stochtree/man/computeForestLeafVariances.Rd |only stochtree-0.3.1/stochtree/man/computeForestMaxLeafIndex.Rd |only stochtree-0.3.1/stochtree/man/compute_bart_posterior_interval.Rd |only stochtree-0.3.1/stochtree/man/compute_bcf_posterior_interval.Rd |only stochtree-0.3.1/stochtree/man/compute_contrast_bart_model.Rd |only stochtree-0.3.1/stochtree/man/compute_contrast_bcf_model.Rd |only stochtree-0.3.1/stochtree/man/convertPreprocessorToJson.Rd |only stochtree-0.3.1/stochtree/man/createBARTModelFromCombinedJson.Rd |only stochtree-0.3.1/stochtree/man/createBARTModelFromCombinedJsonString.Rd |only stochtree-0.3.1/stochtree/man/createBARTModelFromJson.Rd |only stochtree-0.3.1/stochtree/man/createBARTModelFromJsonFile.Rd |only stochtree-0.3.1/stochtree/man/createBARTModelFromJsonString.Rd |only stochtree-0.3.1/stochtree/man/createBCFModelFromCombinedJson.Rd |only stochtree-0.3.1/stochtree/man/createBCFModelFromCombinedJsonString.Rd |only stochtree-0.3.1/stochtree/man/createBCFModelFromJson.Rd |only stochtree-0.3.1/stochtree/man/createBCFModelFromJsonFile.Rd |only stochtree-0.3.1/stochtree/man/createBCFModelFromJsonString.Rd |only stochtree-0.3.1/stochtree/man/createCppJson.Rd |only stochtree-0.3.1/stochtree/man/createCppJsonFile.Rd |only stochtree-0.3.1/stochtree/man/createCppJsonString.Rd |only stochtree-0.3.1/stochtree/man/createPreprocessorFromJson.Rd |only stochtree-0.3.1/stochtree/man/createPreprocessorFromJsonString.Rd |only stochtree-0.3.1/stochtree/man/extract_parameter.Rd |only stochtree-0.3.1/stochtree/man/extract_parameter.bartmodel.Rd |only stochtree-0.3.1/stochtree/man/extract_parameter.bcfmodel.Rd |only stochtree-0.3.1/stochtree/man/loadForestContainerCombinedJson.Rd |only stochtree-0.3.1/stochtree/man/loadForestContainerCombinedJsonString.Rd |only stochtree-0.3.1/stochtree/man/loadForestContainerJson.Rd |only stochtree-0.3.1/stochtree/man/loadRandomEffectSamplesCombinedJson.Rd |only stochtree-0.3.1/stochtree/man/loadRandomEffectSamplesCombinedJsonString.Rd |only stochtree-0.3.1/stochtree/man/loadRandomEffectSamplesJson.Rd |only stochtree-0.3.1/stochtree/man/preprocessPredictionData.Rd |only stochtree-0.3.1/stochtree/man/preprocessTrainData.Rd |only stochtree-0.3.1/stochtree/man/resetActiveForest.Rd |only stochtree-0.3.1/stochtree/man/resetForestModel.Rd |only stochtree-0.3.1/stochtree/man/resetRandomEffectsModel.Rd |only stochtree-0.3.1/stochtree/man/resetRandomEffectsTracker.Rd |only stochtree-0.3.1/stochtree/man/rootResetRandomEffectsModel.Rd |only stochtree-0.3.1/stochtree/man/rootResetRandomEffectsTracker.Rd |only stochtree-0.3.1/stochtree/man/sample_bart_posterior_predictive.Rd |only stochtree-0.3.1/stochtree/man/sample_bcf_posterior_predictive.Rd |only stochtree-0.3.1/stochtree/man/saveBARTModelToJson.Rd |only stochtree-0.3.1/stochtree/man/saveBARTModelToJsonFile.Rd |only stochtree-0.3.1/stochtree/man/saveBARTModelToJsonString.Rd |only stochtree-0.3.1/stochtree/man/saveBCFModelToJson.Rd |only stochtree-0.3.1/stochtree/man/saveBCFModelToJsonFile.Rd |only stochtree-0.3.1/stochtree/man/saveBCFModelToJsonString.Rd |only stochtree-0.3.1/stochtree/man/savePreprocessorToJsonString.Rd |only stochtree-0.4.0/stochtree/DESCRIPTION | 16 stochtree-0.4.0/stochtree/MD5 | 244 - stochtree-0.4.0/stochtree/NAMESPACE | 24 stochtree-0.4.0/stochtree/NEWS.md | 34 stochtree-0.4.0/stochtree/R/bart.R | 1237 +++++++--- stochtree-0.4.0/stochtree/R/bcf.R | 888 ++----- stochtree-0.4.0/stochtree/R/calibration.R | 6 stochtree-0.4.0/stochtree/R/config.R | 56 stochtree-0.4.0/stochtree/R/cpp11.R | 36 stochtree-0.4.0/stochtree/R/data.R | 80 stochtree-0.4.0/stochtree/R/forest.R | 215 + stochtree-0.4.0/stochtree/R/generics.R | 10 stochtree-0.4.0/stochtree/R/kernel.R | 96 stochtree-0.4.0/stochtree/R/model.R | 21 stochtree-0.4.0/stochtree/R/posterior_transformation.R | 376 ++- stochtree-0.4.0/stochtree/R/random_effects.R | 320 +- stochtree-0.4.0/stochtree/R/serialization.R | 297 +- stochtree-0.4.0/stochtree/R/stochtree-package.R | 1 stochtree-0.4.0/stochtree/R/utils.R | 210 + stochtree-0.4.0/stochtree/R/variance.R | 8 stochtree-0.4.0/stochtree/configure | 18 stochtree-0.4.0/stochtree/configure.ac | 2 stochtree-0.4.0/stochtree/man/BARTSerialization.Rd |only stochtree-0.4.0/stochtree/man/BCFSerialization.Rd |only stochtree-0.4.0/stochtree/man/CppJson.Rd | 2 stochtree-0.4.0/stochtree/man/DataPreprocessing.Rd |only stochtree-0.4.0/stochtree/man/Forest.Rd | 12 stochtree-0.4.0/stochtree/man/ForestDataset.Rd | 113 stochtree-0.4.0/stochtree/man/ForestKernelComputation.Rd |only stochtree-0.4.0/stochtree/man/ForestModel.Rd | 2 stochtree-0.4.0/stochtree/man/ForestModelConfig.Rd | 74 stochtree-0.4.0/stochtree/man/ForestSamples.Rd | 12 stochtree-0.4.0/stochtree/man/ForestSamplesSerialization.Rd |only stochtree-0.4.0/stochtree/man/ForestStateManagement.Rd |only stochtree-0.4.0/stochtree/man/GlobalModelConfig.Rd | 2 stochtree-0.4.0/stochtree/man/JSONCreation.Rd |only stochtree-0.4.0/stochtree/man/Outcome.Rd | 6 stochtree-0.4.0/stochtree/man/OutcomeModel.Rd |only stochtree-0.4.0/stochtree/man/RandomEffectSamples.Rd | 44 stochtree-0.4.0/stochtree/man/RandomEffectSamplesSerialization.Rd |only stochtree-0.4.0/stochtree/man/RandomEffectStateManagement.Rd |only stochtree-0.4.0/stochtree/man/RandomEffectsDataset.Rd | 2 stochtree-0.4.0/stochtree/man/RandomEffectsModel.Rd | 2 stochtree-0.4.0/stochtree/man/RandomEffectsTracker.Rd | 2 stochtree-0.4.0/stochtree/man/bart.Rd | 5 stochtree-0.4.0/stochtree/man/bcf.Rd | 5 stochtree-0.4.0/stochtree/man/calibrateInverseGammaErrorVariance.Rd | 6 stochtree-0.4.0/stochtree/man/computeBARTPosteriorInterval.Rd |only stochtree-0.4.0/stochtree/man/computeBCFPosteriorInterval.Rd |only stochtree-0.4.0/stochtree/man/computeContrastBARTModel.Rd |only stochtree-0.4.0/stochtree/man/computeContrastBCFModel.Rd |only stochtree-0.4.0/stochtree/man/createCppRNG.Rd | 2 stochtree-0.4.0/stochtree/man/createForest.Rd | 4 stochtree-0.4.0/stochtree/man/createForestDataset.Rd | 4 stochtree-0.4.0/stochtree/man/createForestModel.Rd | 4 stochtree-0.4.0/stochtree/man/createForestModelConfig.Rd | 10 stochtree-0.4.0/stochtree/man/createForestSamples.Rd | 4 stochtree-0.4.0/stochtree/man/createGlobalModelConfig.Rd | 4 stochtree-0.4.0/stochtree/man/createOutcome.Rd | 4 stochtree-0.4.0/stochtree/man/createRandomEffectSamples.Rd | 4 stochtree-0.4.0/stochtree/man/createRandomEffectsDataset.Rd | 4 stochtree-0.4.0/stochtree/man/createRandomEffectsModel.Rd | 4 stochtree-0.4.0/stochtree/man/createRandomEffectsTracker.Rd | 4 stochtree-0.4.0/stochtree/man/extractParameter.Rd |only stochtree-0.4.0/stochtree/man/extractParameter.bartmodel.Rd |only stochtree-0.4.0/stochtree/man/extractParameter.bcfmodel.Rd |only stochtree-0.4.0/stochtree/man/getRandomEffectSamples.Rd | 2 stochtree-0.4.0/stochtree/man/getRandomEffectSamples.bartmodel.Rd | 2 stochtree-0.4.0/stochtree/man/getRandomEffectSamples.bcfmodel.Rd | 2 stochtree-0.4.0/stochtree/man/loadScalarJson.Rd | 4 stochtree-0.4.0/stochtree/man/loadVectorJson.Rd | 4 stochtree-0.4.0/stochtree/man/plot.bartmodel.Rd | 2 stochtree-0.4.0/stochtree/man/plot.bcfmodel.Rd | 2 stochtree-0.4.0/stochtree/man/predict.bartmodel.Rd | 4 stochtree-0.4.0/stochtree/man/predict.bcfmodel.Rd | 2 stochtree-0.4.0/stochtree/man/print.ForestSamples.Rd |only stochtree-0.4.0/stochtree/man/print.RandomEffectSamples.Rd |only stochtree-0.4.0/stochtree/man/print.bartmodel.Rd | 2 stochtree-0.4.0/stochtree/man/print.bcfmodel.Rd | 2 stochtree-0.4.0/stochtree/man/sampleBARTPosteriorPredictive.Rd |only stochtree-0.4.0/stochtree/man/sampleBCFPosteriorPredictive.Rd |only stochtree-0.4.0/stochtree/man/sampleGlobalErrorVarianceOneIteration.Rd | 4 stochtree-0.4.0/stochtree/man/sampleLeafVarianceOneIteration.Rd | 4 stochtree-0.4.0/stochtree/man/sample_without_replacement.Rd | 4 stochtree-0.4.0/stochtree/man/stochtree-package.Rd | 3 stochtree-0.4.0/stochtree/man/summary.bartmodel.Rd | 2 stochtree-0.4.0/stochtree/man/summary.bcfmodel.Rd | 2 stochtree-0.4.0/stochtree/src/Makevars.in | 1 stochtree-0.4.0/stochtree/src/Makevars.win.in | 1 stochtree-0.4.0/stochtree/src/R_data.cpp | 31 stochtree-0.4.0/stochtree/src/cpp11.cpp | 77 stochtree-0.4.0/stochtree/src/forest.cpp | 6 stochtree-0.4.0/stochtree/src/include/stochtree/data.h | 33 stochtree-0.4.0/stochtree/src/include/stochtree/leaf_model.h | 636 +++-- stochtree-0.4.0/stochtree/src/include/stochtree/ordinal_sampler.h |only stochtree-0.4.0/stochtree/src/include/stochtree/partition_tracker.h | 2 stochtree-0.4.0/stochtree/src/include/stochtree/tree_sampler.h | 51 stochtree-0.4.0/stochtree/src/kernel.cpp | 1 stochtree-0.4.0/stochtree/src/leaf_model.cpp | 60 stochtree-0.4.0/stochtree/src/ordinal_sampler.cpp |only stochtree-0.4.0/stochtree/src/partition_tracker.cpp | 56 stochtree-0.4.0/stochtree/src/sampler.cpp | 150 - stochtree-0.4.0/stochtree/src/stochtree_types.h | 2 stochtree-0.4.0/stochtree/tests/testthat/test-api-combinations.R | 12 stochtree-0.4.0/stochtree/tests/testthat/test-bart.R | 512 ++++ stochtree-0.4.0/stochtree/tests/testthat/test-extract-parameter.R |only stochtree-0.4.0/stochtree/tests/testthat/test-forest-container.R | 24 stochtree-0.4.0/stochtree/tests/testthat/test-predict.R | 1051 ++++++++ stochtree-0.4.0/stochtree/tests/testthat/test-print-summary.R |only stochtree-0.4.0/stochtree/tests/testthat/test-random-effects.R | 101 stochtree-0.4.0/stochtree/tests/testthat/test-utils.R | 32 160 files changed, 5195 insertions(+), 2227 deletions(-)
Title: Import Various Northern and Southern Hemisphere Climate Indices
Description: Downloads Southern Oscillation Index, Oceanic Nino
Index, North Pacific Gyre Oscillation data, North Atlantic Oscillation
and Arctic Oscillation. Data sources are described in the help files for each function.
Author: Sam Albers [aut, cre],
Elio Campitelli [ctb]
Maintainer: Sam Albers <sam.albers@gmail.com>
Diff between rsoi versions 0.5.6 dated 2023-11-16 and 0.5.7 dated 2026-03-06
DESCRIPTION | 13 +-- MD5 | 66 +++++++++--------- NAMESPACE | 1 NEWS.md | 8 +- R/download-aao.R | 59 ++++++++-------- R/download-ao.R | 69 ++++++++++--------- R/download-asymsam.R | 123 +++++----------------------------- R/download-dmi.R | 71 ++++++++++--------- R/download-enso.R | 72 +++++++++---------- R/download-nao.R | 70 ++++++++++--------- R/download-npgo.R | 57 ++++++++------- R/download-oni.R | 108 +++++++++++++++++------------ R/download-pdo.R | 93 +++++++++++++------------ R/download-roni.R |only R/download-soi.R | 80 +++++++++++----------- R/download_mei.R | 130 +++++++++++++++++++++++------------- R/rsoi-package.R | 2 R/utils.R | 91 ++++++++++++++----------- README.md | 16 ++-- build/partial.rdb |binary man/download_asymsam_monthly.Rd | 27 +------ man/download_dmi.Rd | 8 +- man/download_enso.Rd | 2 man/download_mei.Rd | 10 +- man/download_npgo.Rd | 3 man/download_oni.Rd | 2 man/download_pdo.Rd | 12 +-- man/download_roni.Rd |only man/figures/plot-1.png |binary man/rsoi-package.Rd | 3 tests/testthat/helper.R | 14 ++- tests/testthat/test-cache_logic.R | 75 +++++++++++++++----- tests/testthat/test-download-oni.R | 2 tests/testthat/test_download_.R | 20 +++-- tests/testthat/test_download_enso.R | 8 +- 35 files changed, 687 insertions(+), 628 deletions(-)
Title: Build Modern Web Applications with 'htmx' and 'plumber2'
Description: A lightweight framework for building server-driven web
applications in 'R'. 'htmxr' combines the simplicity of 'htmx' for
partial page updates with the power of 'plumber2' for non-blocking
HTTP endpoints. Build interactive dashboards and data applications
without writing 'JavaScript', using familiar 'R' patterns inspired by
'Shiny'. For more information on 'htmx', see <https://htmx.org>.
Author: Arthur Breant [aut, cre]
Maintainer: Arthur Breant <arthur@thinkr.fr>
Diff between htmxr versions 0.1.1 dated 2026-03-04 and 0.2.0 dated 2026-03-06
htmxr-0.1.1/htmxr/R/htmxr_is_htmx.R |only htmxr-0.1.1/htmxr/build |only htmxr-0.1.1/htmxr/inst/doc |only htmxr-0.1.1/htmxr/man/htmxr_is_htmx.Rd |only htmxr-0.1.1/htmxr/tests/testthat/test-htmxr_is_htmx.R |only htmxr-0.1.1/htmxr/vignettes |only htmxr-0.2.0/htmxr/DESCRIPTION | 10 +-- htmxr-0.2.0/htmxr/MD5 | 49 ++++++++---------- htmxr-0.2.0/htmxr/NAMESPACE | 5 + htmxr-0.2.0/htmxr/NEWS.md | 23 ++++++++ htmxr-0.2.0/htmxr/R/hx_button.R | 15 ++--- htmxr-0.2.0/htmxr/R/hx_is_htmx.R |only htmxr-0.2.0/htmxr/R/hx_table.R | 8 +- htmxr-0.2.0/htmxr/R/hx_trigger.R |only htmxr-0.2.0/htmxr/R/utils.R |only htmxr-0.2.0/htmxr/README.md | 9 +++ htmxr-0.2.0/htmxr/inst/examples/json-endpoint/api.R | 2 htmxr-0.2.0/htmxr/inst/examples/select-input/api.R | 2 htmxr-0.2.0/htmxr/inst/examples/toast-notification |only htmxr-0.2.0/htmxr/man/figures/intro_htmxr.png |binary htmxr-0.2.0/htmxr/man/figures/intro_htmxr_hello.png |binary htmxr-0.2.0/htmxr/man/hx_button.Rd | 15 ++--- htmxr-0.2.0/htmxr/man/hx_is_htmx.Rd |only htmxr-0.2.0/htmxr/man/hx_table.Rd | 6 +- htmxr-0.2.0/htmxr/man/hx_trigger.Rd |only htmxr-0.2.0/htmxr/tests/testthat/test-hx_button.R | 19 +++--- htmxr-0.2.0/htmxr/tests/testthat/test-hx_is_htmx.R |only htmxr-0.2.0/htmxr/tests/testthat/test-hx_table.R | 4 - htmxr-0.2.0/htmxr/tests/testthat/test-hx_trigger.R |only htmxr-0.2.0/htmxr/tests/testthat/test-utils.R |only 30 files changed, 100 insertions(+), 67 deletions(-)
Title: Cross-Platform File System Operations Based on 'libuv'
Description: A cross-platform interface to file system operations, built
on top of the 'libuv' C library.
Author: Jim Hester [aut],
Hadley Wickham [aut],
Gabor Csardi [aut],
Jeroen Ooms [cre],
libuv project contributors [cph] ,
Joyent, Inc. and other Node contributors [cph] ,
Posit Software, PBC [cph, fnd]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between fs versions 1.6.6 dated 2025-04-12 and 1.6.7 dated 2026-03-06
DESCRIPTION | 26 +- LICENSE | 2 MD5 | 139 ++++++----- NAMESPACE | 2 NEWS.md | 16 + R/access.R | 11 R/copy.R | 42 ++- R/create.R | 21 + R/delete.R | 20 + R/file.R | 37 ++- R/fs_bytes.R | 63 +++-- R/fs_path.R | 36 ++ R/fs_perms.R | 35 ++ R/is.R | 20 + R/list.R | 80 +++++- R/path.R | 78 ++++-- R/path_package.R | 17 - R/path_select.R |only R/temp.R | 1 R/tree.R | 34 ++ R/utils.R | 48 +++ README.md | 149 ++++++------ build/vignette.rds |binary inst/WORDLIST | 5 inst/doc/function-comparisons.R | 2 inst/doc/function-comparisons.Rmd | 6 inst/doc/function-comparisons.html | 2 man/dir_tree.Rd | 1 man/file_access.Rd | 9 man/file_touch.Rd | 5 man/fs-package.Rd | 7 man/is_dir_empty.Rd |only man/path_file.Rd | 16 - man/path_select_components.Rd |only man/path_tidy.Rd | 2 src/Makevars | 14 - src/Makevars.ucrt |only src/Makevars.win | 12 src/init.cc | 3 src/libuv-1.44.2/src/unix/core.c | 27 +- src/libuv-1.44.2/src/unix/darwin-proctitle.c | 2 src/libuv-1.44.2/src/unix/fs.c | 4 src/libuv-1.44.2/src/unix/process.c | 8 src/libuv-1.44.2/src/unix/tty.c | 2 src/libuv-1.44.2/src/unix/udp.c | 2 src/path.cc | 11 src/windows/getmode.cc | 2 tests/spelling.R | 9 tests/testthat/_snaps/file.md |only tests/testthat/_snaps/fs_bytes.md |only tests/testthat/_snaps/fs_path.md |only tests/testthat/_snaps/fs_perms.md |only tests/testthat/_snaps/path.md |only tests/testthat/_snaps/path_select.md |only tests/testthat/helper.R | 8 tests/testthat/test-access.R | 34 ++ tests/testthat/test-copy.R | 116 +++++---- tests/testthat/test-create.R | 8 tests/testthat/test-delete.R | 44 +-- tests/testthat/test-file.R | 125 ++++++---- tests/testthat/test-file_exists.R | 1 tests/testthat/test-fs_bytes.R | 35 +- tests/testthat/test-fs_path.R | 84 ++++-- tests/testthat/test-fs_perms.R | 173 +++++++------- tests/testthat/test-id.R | 9 tests/testthat/test-is.R | 5 tests/testthat/test-link.R | 1 tests/testthat/test-list.R | 331 ++++++++++++++++----------- tests/testthat/test-path.R | 229 ++++++++++++------ tests/testthat/test-path_package.R | 1 tests/testthat/test-path_select.R |only tests/testthat/test-sanitize.R | 119 +++++---- tests/testthat/test-temp.R | 3 tests/testthat/test-tree.R | 24 + tests/testthat/test-utils.R | 1 vignettes/function-comparisons.Rmd | 6 76 files changed, 1537 insertions(+), 848 deletions(-)
Title: Plots for Compositional Data
Description: Provides a collection of easy-to-use functions for creating
visualizations of compositional data using 'ggplot2'. Includes support
for common plotting techniques in compositional data analysis.
Author: Marc Comas-Cufi [aut, cre]
Maintainer: Marc Comas-Cufi <mcomas@imae.udg.edu>
Diff between coda.plot versions 0.1.10 dated 2025-09-23 and 0.2.1 dated 2026-03-06
DESCRIPTION | 10 MD5 | 20 - R/balance_dendrogram.R | 570 ++++++++++++++++++++++-------------------- R/clr_ciplot.R | 264 ++++++++++++------- R/geometric_mean_barplot.R | 199 +++++++++----- R/ternary_diagram.R | 300 +++++++++++++--------- R/zzz.R | 2 man/balance_dendrogram.Rd | 10 man/clr_biplot.Rd | 53 +++ man/geometric_mean_barplot.Rd | 21 - man/ternary_diagram.Rd | 53 +++ 11 files changed, 901 insertions(+), 601 deletions(-)
Title: Acoustic Telemetry Data Analysis
Description: Designed for studies where animals tagged with acoustic tags are expected
to move through receiver arrays. This package combines the advantages of automatic sorting and checking
of animal movements with the possibility for user intervention on tags that deviate from expected
behaviour. The three analysis functions (explore(), migration() and residency())
allow the users to analyse their data in a systematic way, making it easy to compare results from
different studies.
CJS calculations are based on Perry et al. (2012) <https://www.researchgate.net/publication/256443823_Using_mark-recapture_models_to_estimate_survival_from_telemetry_data>.
Author: Hugo Flavio [aut, cre] ,
Devon Smith [ctb]
Maintainer: Hugo Flavio <hflavio@dal.ca>
Diff between actel versions 1.3.0 dated 2023-10-18 and 1.4.0 dated 2026-03-06
actel-1.3.0/actel/man/appendTo.Rd |only actel-1.3.0/actel/man/checkFirstDetBackFromRelease.Rd |only actel-1.3.0/actel/man/checkIssue79.Rd |only actel-1.3.0/actel/man/emergencyBreak.Rd |only actel-1.3.0/actel/man/overrideValidityChecks.Rd |only actel-1.3.0/actel/man/printSurvivalGraphic.Rd |only actel-1.3.0/actel/man/stopAndReport.Rd |only actel-1.4.0/actel/DESCRIPTION | 30 actel-1.4.0/actel/MD5 | 261 actel-1.4.0/actel/NAMESPACE | 2 actel-1.4.0/actel/NEWS.md | 44 actel-1.4.0/actel/R/CJS.R | 383 - actel-1.4.0/actel/R/actel.R | 10 actel-1.4.0/actel/R/check.R | 1560 +++-- actel-1.4.0/actel/R/distances.R | 549 + actel-1.4.0/actel/R/explore.R | 316 - actel-1.4.0/actel/R/get.R | 555 + actel-1.4.0/actel/R/helper.R | 736 ++ actel-1.4.0/actel/R/load.R | 2929 ++++++---- actel-1.4.0/actel/R/migration.R | 1973 ++++-- actel-1.4.0/actel/R/movements.R | 148 actel-1.4.0/actel/R/plot.R | 852 ++ actel-1.4.0/actel/R/preload.R | 509 + actel-1.4.0/actel/R/print.R | 656 +- actel-1.4.0/actel/R/residency.R | 651 +- actel-1.4.0/actel/R/sysdata.rda |binary actel-1.4.0/actel/R/user_interaction.R | 476 + actel-1.4.0/actel/R/widget_setups.R | 152 actel-1.4.0/actel/R/z_examples.R | 6 actel-1.4.0/actel/R/zzz.R | 11 actel-1.4.0/actel/README.md | 86 actel-1.4.0/actel/build/vignette.rds |binary actel-1.4.0/actel/data/additional.residency.results.rda |binary actel-1.4.0/actel/data/example.results.rda |binary actel-1.4.0/actel/inst/doc/actel-website.Rmd | 2 actel-1.4.0/actel/inst/doc/actel-website.html | 38 actel-1.4.0/actel/man/actel.Rd | 9 actel-1.4.0/actel/man/assembleArrayCJS.Rd | 4 actel-1.4.0/actel/man/assembleGroupCJS.Rd | 4 actel-1.4.0/actel/man/assembleMatrices.Rd | 11 actel-1.4.0/actel/man/assembleOutput.Rd | 3 actel-1.4.0/actel/man/assembleSectionOverview.Rd | 11 actel-1.4.0/actel/man/assembleSplitCJS.Rd | 4 actel-1.4.0/actel/man/assembleTimetable.Rd | 22 actel-1.4.0/actel/man/assembleValidMoves.Rd | 8 actel-1.4.0/actel/man/blameArrays.Rd | 2 actel-1.4.0/actel/man/breakMatricesByArray.Rd | 6 actel-1.4.0/actel/man/checkArguments.Rd | 27 actel-1.4.0/actel/man/checkFirstMove.Rd |only actel-1.4.0/actel/man/checkImpassables.Rd | 4 actel-1.4.0/actel/man/checkJumpDistance.Rd | 8 actel-1.4.0/actel/man/checkLinearity.Rd | 23 actel-1.4.0/actel/man/cjs_args.Rd | 6 actel-1.4.0/actel/man/collectStrays.Rd | 6 actel-1.4.0/actel/man/completeMatrix.Rd | 8 actel-1.4.0/actel/man/convertCodes.Rd | 3 actel-1.4.0/actel/man/convertLotekCDMAFile.Rd |only actel-1.4.0/actel/man/convertTimes.Rd | 3 actel-1.4.0/actel/man/countArrayFailures.Rd | 4 actel-1.4.0/actel/man/countBackMoves.Rd | 10 actel-1.4.0/actel/man/createStandards.Rd | 3 actel-1.4.0/actel/man/deleteHelpers.Rd | 3 actel-1.4.0/actel/man/distancesMatrix.Rd | 45 actel-1.4.0/actel/man/dotList.Rd | 4 actel-1.4.0/actel/man/dotMatrix.Rd | 3 actel-1.4.0/actel/man/efficiencyMatrix.Rd | 8 actel-1.4.0/actel/man/emptyMatrix.Rd | 12 actel-1.4.0/actel/man/event.Rd |only actel-1.4.0/actel/man/excludeTags.Rd | 9 actel-1.4.0/actel/man/expFirstArray.Rd |only actel-1.4.0/actel/man/explore.Rd | 17 actel-1.4.0/actel/man/findDirectChains.Rd | 7 actel-1.4.0/actel/man/findPeers.Rd | 13 actel-1.4.0/actel/man/findSecondsPerSection.Rd | 9 actel-1.4.0/actel/man/firstArrayFailure.Rd | 4 actel-1.4.0/actel/man/getSpeeds.Rd | 13 actel-1.4.0/actel/man/getSpeedsChecker.Rd |only actel-1.4.0/actel/man/getSpeedsCompiler.Rd |only actel-1.4.0/actel/man/getTimes.Rd | 9 actel-1.4.0/actel/man/groupMovements.Rd | 8 actel-1.4.0/actel/man/loadDetections.Rd | 3 actel-1.4.0/actel/man/loadDistances.Rd | 6 actel-1.4.0/actel/man/loadDot.Rd | 6 actel-1.4.0/actel/man/loadShape.Rd | 28 actel-1.4.0/actel/man/loadSpatial.Rd | 14 actel-1.4.0/actel/man/loadStudyData.Rd | 15 actel-1.4.0/actel/man/migration.Rd | 123 actel-1.4.0/actel/man/movementSpeeds.Rd | 8 actel-1.4.0/actel/man/oneWayMoves.Rd | 3 actel-1.4.0/actel/man/overrideChecks.Rd |only actel-1.4.0/actel/man/parse_arg.Rd |only actel-1.4.0/actel/man/parse_list.Rd |only actel-1.4.0/actel/man/plotDetections.Rd | 3 actel-1.4.0/actel/man/plotDot.Rd |only actel-1.4.0/actel/man/preload.Rd | 15 actel-1.4.0/actel/man/printIndividuals.Rd | 3 actel-1.4.0/actel/man/printMigrationRmd.Rd | 30 actel-1.4.0/actel/man/printResidencyRmd.Rd | 12 actel-1.4.0/actel/man/printSurvivalGraphics.Rd |only actel-1.4.0/actel/man/processInnovaseaFile.Rd |only actel-1.4.0/actel/man/res_efficiency.Rd | 6 actel-1.4.0/actel/man/residency.Rd | 20 actel-1.4.0/actel/man/setSpatialStandards.Rd | 3 actel-1.4.0/actel/man/shapeToRaster.Rd | 62 actel-1.4.0/actel/man/simplifyMovements.Rd | 8 actel-1.4.0/actel/man/speedReleaseToFirst.Rd | 8 actel-1.4.0/actel/man/splitDetections.Rd | 6 actel-1.4.0/actel/man/transformSpatial.Rd | 5 actel-1.4.0/actel/man/transitionLayer.Rd | 31 actel-1.4.0/actel/tests/testthat/aux_dotPaths_complex_text_disregard_parallels_false.RData |binary actel-1.4.0/actel/tests/testthat/aux_dotPaths_complex_text_disregard_parallels_true.RData |binary actel-1.4.0/actel/tests/testthat/test_CJS_functions.R | 28 actel-1.4.0/actel/tests/testthat/test_CJS_functions_2_releases.R | 39 actel-1.4.0/actel/tests/testthat/test_array_movement_checks.R | 131 actel-1.4.0/actel/tests/testthat/test_blankWorkspace.R | 2 actel-1.4.0/actel/tests/testthat/test_convertLotekCDMAFile.R |only actel-1.4.0/actel/tests/testthat/test_createStandards.R | 10 actel-1.4.0/actel/tests/testthat/test_distancesMatrix_functions.R | 35 actel-1.4.0/actel/tests/testthat/test_dotList.R | 22 actel-1.4.0/actel/tests/testthat/test_exampleWorkspace.R | 2 actel-1.4.0/actel/tests/testthat/test_explore.R | 30 actel-1.4.0/actel/tests/testthat/test_getSpeeds.R | 13 actel-1.4.0/actel/tests/testthat/test_helpers.R | 32 actel-1.4.0/actel/tests/testthat/test_loadDetections.R | 5 actel-1.4.0/actel/tests/testthat/test_loadDistances.R | 7 actel-1.4.0/actel/tests/testthat/test_loadDot.R | 110 actel-1.4.0/actel/tests/testthat/test_loadSpatial.R | 8 actel-1.4.0/actel/tests/testthat/test_loadStudyData.R | 2 actel-1.4.0/actel/tests/testthat/test_migration.R | 32 actel-1.4.0/actel/tests/testthat/test_migration_helpers.R | 69 actel-1.4.0/actel/tests/testthat/test_plotArray.R | 2 actel-1.4.0/actel/tests/testthat/test_plotDot.R |only actel-1.4.0/actel/tests/testthat/test_plotLive.R | 5 actel-1.4.0/actel/tests/testthat/test_plotSensors.R | 2 actel-1.4.0/actel/tests/testthat/test_plotTimes.R | 16 actel-1.4.0/actel/tests/testthat/test_preload.R | 552 + actel-1.4.0/actel/tests/testthat/test_print_extremes.R | 12 actel-1.4.0/actel/tests/testthat/test_residency.R | 34 actel-1.4.0/actel/tests/testthat/test_residency_helpers.R | 21 actel-1.4.0/actel/tests/testthat/test_sectionMovements.R | 10 actel-1.4.0/actel/tests/testthat/test_transformSpatial.R | 23 actel-1.4.0/actel/vignettes/actel-website.Rmd | 2 142 files changed, 9708 insertions(+), 5254 deletions(-)
Title: Optimize and Compress Images
Description: Optimize and compress images using 'Rust' libraries to reduce
file sizes while maintaining image quality. Supports PNG palette
reduction and dithering via the 'exoquant' crate before lossless PNG
optimization via the 'oxipng' crate. The package provides functions to
optimize individual image files or entire directories, with configurable
compression levels.
Author: Yihui Xie [aut, cre, cph] ,
Authors of the dependency Rust crates [ctb, cph]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between tinyimg versions 0.2 dated 2026-02-20 and 0.3 dated 2026-03-06
tinyimg-0.2/tinyimg/R/optim_png.R |only tinyimg-0.2/tinyimg/man/optim_png.Rd |only tinyimg-0.3/tinyimg/DESCRIPTION | 13 - tinyimg-0.3/tinyimg/MD5 | 33 ++-- tinyimg-0.3/tinyimg/NAMESPACE | 2 tinyimg-0.3/tinyimg/NEWS.md | 16 +- tinyimg-0.3/tinyimg/R/extendr-wrappers.R | 4 tinyimg-0.3/tinyimg/R/tinypng.R |only tinyimg-0.3/tinyimg/README.md | 19 +- tinyimg-0.3/tinyimg/configure | 2 tinyimg-0.3/tinyimg/inst/AUTHORS | 3 tinyimg-0.3/tinyimg/man/tinypng.Rd |only tinyimg-0.3/tinyimg/src/Makevars | 17 ++ tinyimg-0.3/tinyimg/src/entrypoint.c | 5 tinyimg-0.3/tinyimg/src/rust/Cargo.lock | 18 ++ tinyimg-0.3/tinyimg/src/rust/Cargo.toml | 2 tinyimg-0.3/tinyimg/src/rust/src/lib.rs | 232 ++++++++++++++++++++++++----- tinyimg-0.3/tinyimg/src/rust/vendor.tar.xz |binary tinyimg-0.3/tinyimg/tests/test-all.R | 143 ----------------- tinyimg-0.3/tinyimg/tests/testit |only 20 files changed, 289 insertions(+), 220 deletions(-)
Title: Tidy Consultant Universe
Description: Loads the 5 packages in the Tidy Consultant Universe. This collection of packages is useful for anyone doing data science,
data analysis, or quantitative consulting. The functions in these packages range from data cleaning, data validation, data binning, statistical modeling, and file exporting.
Author: Harrison Tietze [aut, cre]
Maintainer: Harrison Tietze <Harrison4192@gmail.com>
This is a re-admission after prior archival of version 0.1.1 dated 2024-06-07
Diff between TidyConsultant versions 0.1.1 dated 2024-06-07 and 0.1.2 dated 2026-03-06
DESCRIPTION | 8 ++-- MD5 | 12 +++--- NEWS.md | 2 + README.md | 2 - build/vignette.rds |binary inst/doc/TidyConsultant.R | 8 ++-- inst/doc/TidyConsultant.html | 83 +++++++++++++++++++++---------------------- 7 files changed, 59 insertions(+), 56 deletions(-)
More information about TidyConsultant at CRAN
Permanent link
Title: Regression-Based Causal Mediation Analysis with Interaction and
Effect Modification Terms
Description: This is an extension of the regression-based causal mediation analysis first proposed by Valeri and VanderWeele (2013) <doi:10.1037/a0031034> and Valeri and VanderWeele (2015) <doi:10.1097/EDE.0000000000000253>). It supports including effect measure modification by covariates(treatment-covariate and mediator-covariate product terms in mediator and outcome regression models) as proposed by Li et al (2023) <doi:10.1097/EDE.0000000000001643>. It also accommodates the original 'SAS' macro and 'PROC CAUSALMED' procedure in 'SAS' when there is no effect measure modification. Linear and logistic models are supported for the mediator model. Linear, logistic, loglinear, Poisson, negative binomial, Cox, and accelerated failure time (exponential and Weibull) models are supported for the outcome model.
Author: Kazuki Yoshida [ctb, aut] ,
Yi Li [cre, aut] ,
Maya Mathur [ctb]
Maintainer: Yi Li <yi.li10@mail.mcgill.ca>
This is a re-admission after prior archival of version 1.0.1 dated 2024-01-12
Diff between regmedint versions 1.0.1 dated 2024-01-12 and 1.0.2 dated 2026-03-06
DESCRIPTION | 40 MD5 | 33 NAMESPACE | 2 R/00_package_information.R | 10 R/03_fit_mreg_mediator_modeling.R | 1 R/06_calc_myreg_helpers_coef.R | 2 build/vignette.rds |binary inst/doc/vig_01_introduction.html | 222 ++-- inst/doc/vig_02_formulas.html | 173 +-- inst/doc/vig_03_bootstrap.html | 376 ++++---- inst/doc/vig_04_mi.html | 397 ++++---- inst/doc/vig_05_emm.html | 338 +++---- inst/doc/vig_06_delta_boot.R | 520 +++++------ inst/doc/vig_06_delta_boot.html | 1612 +++++++++++++++++++++++++++--------- man/regmedint-package.Rd |only man/regmedint.Rd | 22 man/vv2015.Rd | 2 tests/testthat/test-05_calc_myreg.R | 188 ++-- 18 files changed, 2373 insertions(+), 1565 deletions(-)
Title: Multilevel Model Intraclass Correlation for Slope Heterogeneity
Description: A function and vignettes for computing an intraclass correlation
described in Aguinis & Culpepper (2015) <doi:10.1177/1094428114563618>.
This package quantifies the share of variance in a dependent variable that
is attributed to group heterogeneity in slopes.
Author: Steven Andrew Culpepper [aut, cph, cre] ,
Herman Aguinis [aut, cph]
Maintainer: Steven Andrew Culpepper <sculpepp@illinois.edu>
This is a re-admission after prior archival of version 1.2.0 dated 2019-01-28
Diff between iccbeta versions 1.2.0 dated 2019-01-28 and 1.2.1 dated 2026-03-06
DESCRIPTION | 27 +++++++++++++++------------ MD5 | 23 ++++++++++++----------- NEWS.md | 16 ++++++++++++++++ README.md | 26 +++++++++----------------- build |only inst/CITATION | 16 ++++++++-------- man/Hofmann.Rd | 6 ++++-- man/icc_beta.Rd | 2 +- man/iccbeta-package.Rd | 10 ++++------ man/simICCdata.Rd | 6 ++++-- src/Makevars | 3 --- src/Makevars.win | 3 --- src/RcppExports.cpp | 5 +++++ 13 files changed, 78 insertions(+), 65 deletions(-)
Title: Disciplined Convex Optimization
Description: An object-oriented modeling language for disciplined
convex programming (DCP) as described in Fu, Narasimhan, and Boyd
(2020, <doi:10.18637/jss.v094.i14>). It allows the user to
formulate convex optimization problems in a natural way following
mathematical convention and DCP rules. The system analyzes the
problem, verifies its convexity, converts it into a canonical
form, and hands it off to an appropriate solver to obtain the
solution. This version uses the S7 object system for improved
performance and maintainability.
Author: Anqi Fu [aut, cre],
Balasubramanian Narasimhan [aut],
Steven Diamond [aut],
John Miller [aut],
Stephen Boyd [ctb]
Maintainer: Anqi Fu <anqif@alumni.stanford.edu>
Diff between CVXR versions 1.0-15 dated 2024-11-07 and 1.8.1 dated 2026-03-06
CVXR-1.0-15/CVXR/R/CVXR-package.R |only CVXR-1.0-15/CVXR/R/CVXcanon.R |only CVXR-1.0-15/CVXR/R/LinOp.R |only CVXR-1.0-15/CVXR/R/LinOpVector.R |only CVXR-1.0-15/CVXR/R/RcppExports.R |only CVXR-1.0-15/CVXR/R/affine.R |only CVXR-1.0-15/CVXR/R/atoms.R |only CVXR-1.0-15/CVXR/R/canonInterface.R |only CVXR-1.0-15/CVXR/R/canonical.R |only CVXR-1.0-15/CVXR/R/clarabel.R |only CVXR-1.0-15/CVXR/R/coeff_extractor.R |only CVXR-1.0-15/CVXR/R/coll_utils.R |only CVXR-1.0-15/CVXR/R/complex2real.R |only CVXR-1.0-15/CVXR/R/conic_solvers.R |only CVXR-1.0-15/CVXR/R/constant.R |only CVXR-1.0-15/CVXR/R/constraints.R |only CVXR-1.0-15/CVXR/R/data.R |only CVXR-1.0-15/CVXR/R/dcp2cone.R |only CVXR-1.0-15/CVXR/R/dgp2dcp.R |only CVXR-1.0-15/CVXR/R/elementwise.R |only CVXR-1.0-15/CVXR/R/eliminate_pwl.R |only CVXR-1.0-15/CVXR/R/exports.R |only CVXR-1.0-15/CVXR/R/expressions.R |only CVXR-1.0-15/CVXR/R/generics.R |only CVXR-1.0-15/CVXR/R/globals.R |only CVXR-1.0-15/CVXR/R/interface.R |only CVXR-1.0-15/CVXR/R/lin_ops.R 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CVXR-1.0-15/CVXR/man/Complex2Real.imag_canon.Rd |only CVXR-1.0-15/CVXR/man/Complex2Real.join.Rd |only CVXR-1.0-15/CVXR/man/Complex2Real.lambda_sum_largest_canon.Rd |only CVXR-1.0-15/CVXR/man/Complex2Real.matrix_frac_canon.Rd |only CVXR-1.0-15/CVXR/man/Complex2Real.nonpos_canon.Rd |only CVXR-1.0-15/CVXR/man/Complex2Real.norm_nuc_canon.Rd |only CVXR-1.0-15/CVXR/man/Complex2Real.param_canon.Rd |only CVXR-1.0-15/CVXR/man/Complex2Real.pnorm_canon.Rd |only CVXR-1.0-15/CVXR/man/Complex2Real.psd_canon.Rd |only CVXR-1.0-15/CVXR/man/Complex2Real.quad_canon.Rd |only CVXR-1.0-15/CVXR/man/Complex2Real.quad_over_lin_canon.Rd |only CVXR-1.0-15/CVXR/man/Complex2Real.real_canon.Rd |only CVXR-1.0-15/CVXR/man/Complex2Real.separable_canon.Rd |only CVXR-1.0-15/CVXR/man/Complex2Real.soc_canon.Rd |only CVXR-1.0-15/CVXR/man/Complex2Real.variable_canon.Rd |only CVXR-1.0-15/CVXR/man/Complex2Real.zero_canon.Rd |only CVXR-1.0-15/CVXR/man/ConeDims-class.Rd |only CVXR-1.0-15/CVXR/man/ConeMatrixStuffing-class.Rd |only CVXR-1.0-15/CVXR/man/ConicSolver-class.Rd |only CVXR-1.0-15/CVXR/man/ConicSolver.get_coeff_offset.Rd |only CVXR-1.0-15/CVXR/man/ConicSolver.get_spacing_matrix.Rd |only CVXR-1.0-15/CVXR/man/Conjugate-class.Rd |only CVXR-1.0-15/CVXR/man/Constant-class.Rd |only CVXR-1.0-15/CVXR/man/ConstantSolver-class.Rd |only CVXR-1.0-15/CVXR/man/Constraint-class.Rd |only CVXR-1.0-15/CVXR/man/Conv-class.Rd |only CVXR-1.0-15/CVXR/man/CumMax-class.Rd |only CVXR-1.0-15/CVXR/man/CumSum-class.Rd |only CVXR-1.0-15/CVXR/man/CvxAttr2Constr-class.Rd |only CVXR-1.0-15/CVXR/man/Dcp2Cone-class.Rd |only CVXR-1.0-15/CVXR/man/Dcp2Cone.entr_canon.Rd |only CVXR-1.0-15/CVXR/man/Dcp2Cone.exp_canon.Rd |only CVXR-1.0-15/CVXR/man/Dcp2Cone.geo_mean_canon.Rd |only CVXR-1.0-15/CVXR/man/Dcp2Cone.huber_canon.Rd |only CVXR-1.0-15/CVXR/man/Dcp2Cone.indicator_canon.Rd |only CVXR-1.0-15/CVXR/man/Dcp2Cone.kl_div_canon.Rd |only CVXR-1.0-15/CVXR/man/Dcp2Cone.lambda_max_canon.Rd |only CVXR-1.0-15/CVXR/man/Dcp2Cone.lambda_sum_largest_canon.Rd |only CVXR-1.0-15/CVXR/man/Dcp2Cone.log1p_canon.Rd |only CVXR-1.0-15/CVXR/man/Dcp2Cone.log_canon.Rd |only CVXR-1.0-15/CVXR/man/Dcp2Cone.log_det_canon.Rd |only CVXR-1.0-15/CVXR/man/Dcp2Cone.log_sum_exp_canon.Rd |only CVXR-1.0-15/CVXR/man/Dcp2Cone.logistic_canon.Rd |only CVXR-1.0-15/CVXR/man/Dcp2Cone.matrix_frac_canon.Rd |only CVXR-1.0-15/CVXR/man/Dcp2Cone.normNuc_canon.Rd |only CVXR-1.0-15/CVXR/man/Dcp2Cone.pnorm_canon.Rd |only CVXR-1.0-15/CVXR/man/Dcp2Cone.power_canon.Rd |only CVXR-1.0-15/CVXR/man/Dcp2Cone.quad_form_canon.Rd |only CVXR-1.0-15/CVXR/man/Dcp2Cone.quad_over_lin_canon.Rd |only CVXR-1.0-15/CVXR/man/Dcp2Cone.sigma_max_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp-class.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.add_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.constant_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.div_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.exp_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.eye_minus_inv_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.geo_mean_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.log_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.mul_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.mulexpression_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.nonpos_constr_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.norm1_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.norm_inf_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.one_minus_pos_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.parameter_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.pf_eigenvalue_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.pnorm_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.power_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.prod_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.quad_form_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.quad_over_lin_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.sum_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.trace_canon.Rd |only CVXR-1.0-15/CVXR/man/Dgp2Dcp.zero_constr_canon.Rd |only CVXR-1.0-15/CVXR/man/DgpCanonMethods-class.Rd |only CVXR-1.0-15/CVXR/man/Diag-int.Rd |only CVXR-1.0-15/CVXR/man/DiagMat-class.Rd |only CVXR-1.0-15/CVXR/man/DiagVec-class.Rd |only CVXR-1.0-15/CVXR/man/Diff-int.Rd |only CVXR-1.0-15/CVXR/man/DiffPos.Rd |only CVXR-1.0-15/CVXR/man/DivExpression-class.Rd |only CVXR-1.0-15/CVXR/man/ECOS-class.Rd |only CVXR-1.0-15/CVXR/man/ECOS.dims_to_solver_dict.Rd |only CVXR-1.0-15/CVXR/man/ECOS_BB-class.Rd |only CVXR-1.0-15/CVXR/man/Elementwise-class.Rd |only CVXR-1.0-15/CVXR/man/EliminatePwl-class.Rd |only CVXR-1.0-15/CVXR/man/EliminatePwl.abs_canon.Rd |only CVXR-1.0-15/CVXR/man/EliminatePwl.cummax_canon.Rd |only CVXR-1.0-15/CVXR/man/EliminatePwl.cumsum_canon.Rd |only CVXR-1.0-15/CVXR/man/EliminatePwl.max_elemwise_canon.Rd |only CVXR-1.0-15/CVXR/man/EliminatePwl.max_entries_canon.Rd |only CVXR-1.0-15/CVXR/man/EliminatePwl.min_elemwise_canon.Rd |only CVXR-1.0-15/CVXR/man/EliminatePwl.min_entries_canon.Rd |only CVXR-1.0-15/CVXR/man/EliminatePwl.norm1_canon.Rd |only CVXR-1.0-15/CVXR/man/EliminatePwl.norm_inf_canon.Rd |only CVXR-1.0-15/CVXR/man/EliminatePwl.sum_largest_canon.Rd |only CVXR-1.0-15/CVXR/man/Entr-class.Rd |only CVXR-1.0-15/CVXR/man/EqConstraint-class.Rd |only CVXR-1.0-15/CVXR/man/EvalParams-class.Rd |only CVXR-1.0-15/CVXR/man/Exp-class.Rd |only CVXR-1.0-15/CVXR/man/ExpCone-class.Rd |only CVXR-1.0-15/CVXR/man/Expression-class.Rd |only CVXR-1.0-15/CVXR/man/EyeMinusInv-class.Rd |only CVXR-1.0-15/CVXR/man/FlipObjective-class.Rd |only CVXR-1.0-15/CVXR/man/GLPK-class.Rd |only CVXR-1.0-15/CVXR/man/GLPK_MI-class.Rd |only CVXR-1.0-15/CVXR/man/GUROBI_CONIC-class.Rd |only CVXR-1.0-15/CVXR/man/GUROBI_QP-class.Rd |only CVXR-1.0-15/CVXR/man/GeoMean-class.Rd |only CVXR-1.0-15/CVXR/man/HStack-class.Rd |only CVXR-1.0-15/CVXR/man/HarmonicMean.Rd |only CVXR-1.0-15/CVXR/man/Huber-class.Rd |only CVXR-1.0-15/CVXR/man/Imag-class.Rd |only CVXR-1.0-15/CVXR/man/Index-class.Rd |only CVXR-1.0-15/CVXR/man/IneqConstraint-class.Rd |only CVXR-1.0-15/CVXR/man/InverseData-class.Rd |only CVXR-1.0-15/CVXR/man/KLDiv-class.Rd |only CVXR-1.0-15/CVXR/man/Kron-class.Rd |only CVXR-1.0-15/CVXR/man/LambdaMax-class.Rd |only CVXR-1.0-15/CVXR/man/LambdaMin.Rd |only CVXR-1.0-15/CVXR/man/LambdaSumLargest-class.Rd |only CVXR-1.0-15/CVXR/man/LambdaSumSmallest.Rd |only CVXR-1.0-15/CVXR/man/Leaf-class.Rd |only CVXR-1.0-15/CVXR/man/ListORConstr-class.Rd |only CVXR-1.0-15/CVXR/man/Log-class.Rd |only CVXR-1.0-15/CVXR/man/Log1p-class.Rd |only CVXR-1.0-15/CVXR/man/LogDet-class.Rd |only CVXR-1.0-15/CVXR/man/LogSumExp-class.Rd |only CVXR-1.0-15/CVXR/man/Logistic-class.Rd |only CVXR-1.0-15/CVXR/man/MOSEK-class.Rd |only CVXR-1.0-15/CVXR/man/MOSEK.parse_dual_vars.Rd |only CVXR-1.0-15/CVXR/man/MOSEK.recover_dual_variables.Rd |only CVXR-1.0-15/CVXR/man/MatrixFrac-class.Rd |only CVXR-1.0-15/CVXR/man/MatrixStuffing-class.Rd |only CVXR-1.0-15/CVXR/man/MaxElemwise-class.Rd |only CVXR-1.0-15/CVXR/man/MaxEntries-class.Rd |only CVXR-1.0-15/CVXR/man/Maximize-class.Rd |only CVXR-1.0-15/CVXR/man/MinElemwise-class.Rd |only CVXR-1.0-15/CVXR/man/MinEntries-class.Rd |only CVXR-1.0-15/CVXR/man/Minimize-class.Rd |only CVXR-1.0-15/CVXR/man/MixedNorm.Rd |only CVXR-1.0-15/CVXR/man/MulExpression-class.Rd |only CVXR-1.0-15/CVXR/man/Multiply-class.Rd |only CVXR-1.0-15/CVXR/man/Neg-int.Rd |only CVXR-1.0-15/CVXR/man/NegExpression-class.Rd |only CVXR-1.0-15/CVXR/man/NonPosConstraint-class.Rd |only CVXR-1.0-15/CVXR/man/NonlinearConstraint-class.Rd |only CVXR-1.0-15/CVXR/man/Norm-atom.Rd |only CVXR-1.0-15/CVXR/man/Norm1-class.Rd |only CVXR-1.0-15/CVXR/man/Norm2-atom.Rd |only CVXR-1.0-15/CVXR/man/NormInf-class.Rd |only CVXR-1.0-15/CVXR/man/NormNuc-class.Rd |only CVXR-1.0-15/CVXR/man/OSQP-class.Rd |only CVXR-1.0-15/CVXR/man/Objective-arith.Rd |only CVXR-1.0-15/CVXR/man/Objective-class.Rd |only CVXR-1.0-15/CVXR/man/OneMinusPos-class.Rd |only CVXR-1.0-15/CVXR/man/PSDConstraint-class.Rd |only CVXR-1.0-15/CVXR/man/PSDWrap-class.Rd |only CVXR-1.0-15/CVXR/man/Parameter-class.Rd |only CVXR-1.0-15/CVXR/man/PfEigenvalue-class.Rd |only CVXR-1.0-15/CVXR/man/Pnorm-class.Rd |only CVXR-1.0-15/CVXR/man/Pos-int.Rd |only CVXR-1.0-15/CVXR/man/Power-class.Rd |only CVXR-1.0-15/CVXR/man/Problem-arith.Rd |only CVXR-1.0-15/CVXR/man/Problem-class.Rd |only CVXR-1.0-15/CVXR/man/ProdEntries-class.Rd |only CVXR-1.0-15/CVXR/man/Promote-class.Rd |only CVXR-1.0-15/CVXR/man/Qp2SymbolicQp-class.Rd |only CVXR-1.0-15/CVXR/man/QpMatrixStuffing-class.Rd |only CVXR-1.0-15/CVXR/man/QpSolver-class.Rd |only CVXR-1.0-15/CVXR/man/QuadForm-class.Rd |only CVXR-1.0-15/CVXR/man/QuadOverLin-class.Rd |only CVXR-1.0-15/CVXR/man/Rdict-class.Rd |only CVXR-1.0-15/CVXR/man/Rdictdefault-class.Rd |only CVXR-1.0-15/CVXR/man/Real-class.Rd |only CVXR-1.0-15/CVXR/man/Reduction-class.Rd |only CVXR-1.0-15/CVXR/man/ReductionSolver-class.Rd |only CVXR-1.0-15/CVXR/man/Reshape-class.Rd |only CVXR-1.0-15/CVXR/man/SCS-class.Rd |only CVXR-1.0-15/CVXR/man/SCS.dims_to_solver_dict.Rd |only CVXR-1.0-15/CVXR/man/SCS.extract_dual_value.Rd |only CVXR-1.0-15/CVXR/man/SOC-class.Rd |only CVXR-1.0-15/CVXR/man/SOCAxis-class.Rd |only CVXR-1.0-15/CVXR/man/SigmaMax-class.Rd |only CVXR-1.0-15/CVXR/man/SizeMetrics-class.Rd |only CVXR-1.0-15/CVXR/man/Solution-class.Rd |only CVXR-1.0-15/CVXR/man/SolverStats-class.Rd |only CVXR-1.0-15/CVXR/man/SolvingChain-class.Rd |only CVXR-1.0-15/CVXR/man/SpecialIndex-class.Rd |only CVXR-1.0-15/CVXR/man/SumEntries-class.Rd |only CVXR-1.0-15/CVXR/man/SumLargest-class.Rd |only CVXR-1.0-15/CVXR/man/SumSmallest.Rd |only CVXR-1.0-15/CVXR/man/SumSquares.Rd |only CVXR-1.0-15/CVXR/man/SymbolicQuadForm-class.Rd |only CVXR-1.0-15/CVXR/man/TotalVariation.Rd |only CVXR-1.0-15/CVXR/man/Trace-class.Rd |only CVXR-1.0-15/CVXR/man/Transpose-class.Rd |only CVXR-1.0-15/CVXR/man/UnaryOperator-class.Rd |only CVXR-1.0-15/CVXR/man/UpperTri-class.Rd |only CVXR-1.0-15/CVXR/man/VStack-class.Rd |only CVXR-1.0-15/CVXR/man/Variable-class.Rd |only CVXR-1.0-15/CVXR/man/Wrap-class.Rd |only CVXR-1.0-15/CVXR/man/ZeroConstraint-class.Rd |only CVXR-1.0-15/CVXR/man/abs.Rd |only CVXR-1.0-15/CVXR/man/accepts.Rd |only CVXR-1.0-15/CVXR/man/are_args_affine.Rd |only CVXR-1.0-15/CVXR/man/complex-atoms.Rd |only CVXR-1.0-15/CVXR/man/complex-methods.Rd |only CVXR-1.0-15/CVXR/man/cone-methods.Rd |only CVXR-1.0-15/CVXR/man/constr_value.Rd |only CVXR-1.0-15/CVXR/man/construct_intermediate_chain-Problem-list-method.Rd |only CVXR-1.0-15/CVXR/man/construct_solving_chain.Rd |only CVXR-1.0-15/CVXR/man/cummax_axis.Rd |only CVXR-1.0-15/CVXR/man/curvature-atom.Rd |only CVXR-1.0-15/CVXR/man/curvature-comp.Rd |only CVXR-1.0-15/CVXR/man/curvature-methods.Rd |only CVXR-1.0-15/CVXR/man/diag.Rd |only CVXR-1.0-15/CVXR/man/diff.Rd |only CVXR-1.0-15/CVXR/man/dim_from_args.Rd |only CVXR-1.0-15/CVXR/man/dot-LinOpVector__new.Rd |only CVXR-1.0-15/CVXR/man/dot-LinOpVector__push_back.Rd |only CVXR-1.0-15/CVXR/man/dot-LinOp__args_push_back.Rd |only CVXR-1.0-15/CVXR/man/dot-LinOp__get_dense_data.Rd |only CVXR-1.0-15/CVXR/man/dot-LinOp__get_id.Rd |only CVXR-1.0-15/CVXR/man/dot-LinOp__get_size.Rd |only CVXR-1.0-15/CVXR/man/dot-LinOp__get_slice.Rd |only CVXR-1.0-15/CVXR/man/dot-LinOp__get_sparse.Rd |only CVXR-1.0-15/CVXR/man/dot-LinOp__get_sparse_data.Rd |only CVXR-1.0-15/CVXR/man/dot-LinOp__get_type.Rd |only CVXR-1.0-15/CVXR/man/dot-LinOp__new.Rd |only CVXR-1.0-15/CVXR/man/dot-LinOp__set_dense_data.Rd |only CVXR-1.0-15/CVXR/man/dot-LinOp__set_size.Rd |only CVXR-1.0-15/CVXR/man/dot-LinOp__set_slice.Rd |only CVXR-1.0-15/CVXR/man/dot-LinOp__set_sparse.Rd |only CVXR-1.0-15/CVXR/man/dot-LinOp__set_sparse_data.Rd |only CVXR-1.0-15/CVXR/man/dot-LinOp__set_type.Rd |only CVXR-1.0-15/CVXR/man/dot-LinOp__size_push_back.Rd |only CVXR-1.0-15/CVXR/man/dot-LinOp__slice_push_back.Rd |only CVXR-1.0-15/CVXR/man/dot-LinOp_at_index.Rd |only CVXR-1.0-15/CVXR/man/dot-ProblemData__get_I.Rd |only CVXR-1.0-15/CVXR/man/dot-ProblemData__get_J.Rd |only CVXR-1.0-15/CVXR/man/dot-ProblemData__get_V.Rd |only CVXR-1.0-15/CVXR/man/dot-ProblemData__get_const_to_row.Rd |only CVXR-1.0-15/CVXR/man/dot-ProblemData__get_const_vec.Rd |only CVXR-1.0-15/CVXR/man/dot-ProblemData__get_id_to_col.Rd |only CVXR-1.0-15/CVXR/man/dot-ProblemData__new.Rd |only CVXR-1.0-15/CVXR/man/dot-ProblemData__set_I.Rd |only CVXR-1.0-15/CVXR/man/dot-ProblemData__set_J.Rd |only CVXR-1.0-15/CVXR/man/dot-ProblemData__set_V.Rd |only CVXR-1.0-15/CVXR/man/dot-ProblemData__set_const_to_row.Rd |only CVXR-1.0-15/CVXR/man/dot-ProblemData__set_const_vec.Rd |only CVXR-1.0-15/CVXR/man/dot-ProblemData__set_id_to_col.Rd |only CVXR-1.0-15/CVXR/man/dot-build_matrix_0.Rd |only CVXR-1.0-15/CVXR/man/dot-build_matrix_1.Rd |only CVXR-1.0-15/CVXR/man/dot-decomp_quad.Rd |only CVXR-1.0-15/CVXR/man/dot-p_norm.Rd |only CVXR-1.0-15/CVXR/man/dual_value-methods.Rd |only 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CVXR-1.8.1/CVXR/man/logistic.Rd | 35 CVXR-1.8.1/CVXR/man/make_sparse_diagonal_matrix.Rd | 2 CVXR-1.8.1/CVXR/man/math_atoms.Rd |only CVXR-1.8.1/CVXR/man/matrix_frac.Rd | 40 CVXR-1.8.1/CVXR/man/matrix_trace.Rd | 22 CVXR-1.8.1/CVXR/man/max_elemwise.Rd | 23 CVXR-1.8.1/CVXR/man/max_entries.Rd | 49 CVXR-1.8.1/CVXR/man/min_elemwise.Rd | 24 CVXR-1.8.1/CVXR/man/min_entries.Rd | 37 CVXR-1.8.1/CVXR/man/mixed_norm.Rd | 29 CVXR-1.8.1/CVXR/man/mul_sign.Rd |only CVXR-1.8.1/CVXR/man/multiply.Rd | 27 CVXR-1.8.1/CVXR/man/name.Rd | 19 CVXR-1.8.1/CVXR/man/neg.Rd | 18 CVXR-1.8.1/CVXR/man/norm1.Rd | 36 CVXR-1.8.1/CVXR/man/norm2.Rd | 47 CVXR-1.8.1/CVXR/man/norm_inf.Rd | 45 CVXR-1.8.1/CVXR/man/norm_nuc.Rd | 18 CVXR-1.8.1/CVXR/man/num_cones.Rd |only CVXR-1.8.1/CVXR/man/numeric_value.Rd |only CVXR-1.8.1/CVXR/man/objective.Rd |only CVXR-1.8.1/CVXR/man/one_minus_pos.Rd | 24 CVXR-1.8.1/CVXR/man/p_norm.Rd | 65 CVXR-1.8.1/CVXR/man/parameters.Rd |only CVXR-1.8.1/CVXR/man/partial_trace.Rd |only CVXR-1.8.1/CVXR/man/partial_transpose.Rd |only CVXR-1.8.1/CVXR/man/perspective.Rd |only CVXR-1.8.1/CVXR/man/pf_eigenvalue.Rd | 36 CVXR-1.8.1/CVXR/man/pos.Rd | 18 CVXR-1.8.1/CVXR/man/power.Rd | 61 CVXR-1.8.1/CVXR/man/problem_data.Rd |only CVXR-1.8.1/CVXR/man/problem_solution.Rd |only CVXR-1.8.1/CVXR/man/problem_status.Rd |only CVXR-1.8.1/CVXR/man/problem_unpack_results.Rd |only CVXR-1.8.1/CVXR/man/prod_entries.Rd | 47 CVXR-1.8.1/CVXR/man/project.Rd |only CVXR-1.8.1/CVXR/man/psolve.Rd | 131 CVXR-1.8.1/CVXR/man/ptp.Rd |only CVXR-1.8.1/CVXR/man/quad_form.Rd | 35 CVXR-1.8.1/CVXR/man/quad_over_lin.Rd | 29 CVXR-1.8.1/CVXR/man/real_expr.Rd |only CVXR-1.8.1/CVXR/man/reduction_accepts.Rd |only CVXR-1.8.1/CVXR/man/reduction_apply.Rd |only CVXR-1.8.1/CVXR/man/reduction_invert.Rd |only CVXR-1.8.1/CVXR/man/rel_entr.Rd |only CVXR-1.8.1/CVXR/man/reshape_expr.Rd | 66 CVXR-1.8.1/CVXR/man/residual.Rd |only CVXR-1.8.1/CVXR/man/resolvent.Rd |only CVXR-1.8.1/CVXR/man/save_dual_value.Rd |only CVXR-1.8.1/CVXR/man/scalar_product.Rd |only CVXR-1.8.1/CVXR/man/scalene.Rd | 26 CVXR-1.8.1/CVXR/man/set_label.Rd |only CVXR-1.8.1/CVXR/man/shape_from_args.Rd |only CVXR-1.8.1/CVXR/man/sigma_max.Rd | 23 CVXR-1.8.1/CVXR/man/sign_from_args.Rd | 18 CVXR-1.8.1/CVXR/man/size.Rd | 28 CVXR-1.8.1/CVXR/man/smith_annotation.Rd |only CVXR-1.8.1/CVXR/man/solution.Rd |only CVXR-1.8.1/CVXR/man/solve_via_data.Rd |only CVXR-1.8.1/CVXR/man/solver-constants.Rd |only CVXR-1.8.1/CVXR/man/solver_default_param.Rd |only CVXR-1.8.1/CVXR/man/solver_name.Rd |only CVXR-1.8.1/CVXR/man/solver_stats.Rd |only CVXR-1.8.1/CVXR/man/square.Rd | 21 CVXR-1.8.1/CVXR/man/status-constants.Rd |only CVXR-1.8.1/CVXR/man/status.Rd |only CVXR-1.8.1/CVXR/man/sum_entries.Rd | 49 CVXR-1.8.1/CVXR/man/sum_largest.Rd | 28 CVXR-1.8.1/CVXR/man/sum_signs.Rd |only CVXR-1.8.1/CVXR/man/sum_smallest.Rd | 29 CVXR-1.8.1/CVXR/man/sum_squares.Rd | 34 CVXR-1.8.1/CVXR/man/to_latex.Rd |only CVXR-1.8.1/CVXR/man/total_variation.Rd |only CVXR-1.8.1/CVXR/man/tr_inv.Rd |only CVXR-1.8.1/CVXR/man/tree_copy.Rd |only CVXR-1.8.1/CVXR/man/tv.Rd | 42 CVXR-1.8.1/CVXR/man/unpack_results.Rd | 69 CVXR-1.8.1/CVXR/man/update_parameters.Rd |only CVXR-1.8.1/CVXR/man/upper_tri.Rd | 21 CVXR-1.8.1/CVXR/man/validate_arguments.Rd |only CVXR-1.8.1/CVXR/man/value-set.Rd |only CVXR-1.8.1/CVXR/man/value.Rd |only CVXR-1.8.1/CVXR/man/variables.Rd |only CVXR-1.8.1/CVXR/man/vdot.Rd |only CVXR-1.8.1/CVXR/man/vec.Rd | 24 CVXR-1.8.1/CVXR/man/vec_to_upper_tri.Rd |only CVXR-1.8.1/CVXR/man/violation.Rd |only CVXR-1.8.1/CVXR/man/visualize.Rd |only CVXR-1.8.1/CVXR/man/vstack.Rd | 37 CVXR-1.8.1/CVXR/man/with_dpp_scope.Rd |only CVXR-1.8.1/CVXR/man/xexp.Rd |only CVXR-1.8.1/CVXR/src/CVXcanon.cpp | 416 -- CVXR-1.8.1/CVXR/src/CVXcanon.h | 13 CVXR-1.8.1/CVXR/src/LinOpOperations.cpp | 1120 ++++--- CVXR-1.8.1/CVXR/src/LinOpOperations.h | 6 CVXR-1.8.1/CVXR/src/Makevars | 4 CVXR-1.8.1/CVXR/src/RcppCVXcanon.cpp | 95 CVXR-1.8.1/CVXR/src/RcppExports.cpp | 183 - CVXR-1.8.1/CVXR/src/RcppLinOp.cpp | 169 - CVXR-1.8.1/CVXR/src/RcppLinOpVector.cpp | 22 CVXR-1.8.1/CVXR/src/RcppProblemData.cpp | 215 - CVXR-1.8.1/CVXR/src/Utils.cpp |only CVXR-1.8.1/CVXR/tests/testthat.R |only CVXR-1.8.1/CVXR/tests/testthat/helper-solver-test-problems.R |only CVXR-1.8.1/CVXR/tests/testthat/helper-solvers.R |only CVXR-1.8.1/CVXR/tests/testthat/test-cran-solver-matrix.R |only CVXR-1.8.1/CVXR/vignettes/cvxr_intro.Rmd | 293 -- CVXR-1.8.1/CVXR/vignettes/whats_new.Rmd |only 981 files changed, 3433 insertions(+), 5329 deletions(-)
Title: Bayesian Nonparametric Mixture Models
Description: Functions to perform Bayesian nonparametric univariate and multivariate density estimation and clustering, by means of Pitman-Yor mixtures, and dependent Dirichlet process mixtures for partially exchangeable data. See Corradin et al. (2021) <doi:10.18637/jss.v100.i15> for more details.
Author: Riccardo Corradin [aut, cre],
Antonio Canale [ctb],
Bernardo Nipoti [ctb]
Maintainer: Riccardo Corradin <riccardo.corradin@gmail.com>
This is a re-admission after prior archival of version 1.1.0 dated 2025-10-21
Diff between BNPmix versions 1.1.0 dated 2025-10-21 and 1.2.1 dated 2026-03-06
DESCRIPTION | 14 +++++----- LICENSE | 16 +++++------ MD5 | 26 +++++++++--------- NAMESPACE | 2 - R/RcppExports.R | 52 ++++++++++++++++++------------------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/BNPmix.pdf |binary src/BNPmix_init.c | 70 +++++++++++++++++++++++++-------------------------- src/MAR.cpp | 4 +- src/Makevars | 2 - src/Makevars.win | 3 -- src/MarFunctions.cpp | 4 +- src/MarFunctions.h | 2 - 14 files changed, 95 insertions(+), 100 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-21 0.1.3
2026-01-28 0.1.2
2026-01-26 0.1.1
2025-12-22 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-20 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-19 1.2.6
Title: A Simple Package for Testing R Packages
Description: Provides two convenience functions assert() and test_pkg() to
facilitate testing R packages.
Author: Yihui Xie [aut, cre] ,
Tomas Kalibera [ctb],
Steven Mortimer [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between testit versions 0.16 dated 2026-02-23 and 0.17 dated 2026-03-06
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/testit.R | 3 ++- R/utils.R | 7 +++---- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: Fast and Scalable Approximate k-Nearest Neighbor Search Methods
using 'N2' Library
Description: Implements methods to perform fast approximate K-nearest neighbor search on input matrix. Algorithm based on the 'N2' implementation of an approximate nearest neighbor search using hierarchical Navigable Small World (NSW) graphs. The original algorithm is described in "Efficient and Robust Approximate Nearest Neighbor Search Using Hierarchical Navigable Small World Graphs", Y. Malkov and D. Yashunin, <doi:10.1109/TPAMI.2018.2889473>, <doi:10.48550/arXiv.1603.09320>.
Author: Peter Kharchenko [aut],
Viktor Petukhov [aut],
Dirk Eddelbuettel [ctb],
Evan Biederstedt [cre, aut]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between N2R versions 1.0.2 dated 2024-02-26 and 1.0.4 dated 2026-03-06
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ README.md | 4 ++-- src/Makevars | 2 +- src/Makevars.win | 2 +- src/n2/Makefile | 4 ++-- src/n2/Makefile.win | 4 ++-- 7 files changed, 18 insertions(+), 18 deletions(-)
Title: Miscellaneous Functions 'T. Yanagida'
Description: Miscellaneous functions for (1) data handling (e.g., grand-mean and group-mean centering, coding variables and reverse coding items, scale and cluster scores, reading and writing Excel and SPSS files), (2) descriptive statistics (e.g., frequency table, cross tabulation, effect size measures), (3) missing data (e.g., descriptive statistics for missing data, missing data pattern, Little's test of Missing Completely at Random, and auxiliary variable analysis), (4) multilevel data (e.g., multilevel descriptive statistics, within-group and between-group correlation matrix, multilevel confirmatory factor analysis, level-specific fit indices, cross-level measurement equivalence evaluation, multilevel composite reliability, and multilevel R-squared measures), (5) item analysis (e.g., confirmatory factor analysis, coefficient alpha and omega, between-group and longitudinal measurement equivalence evaluation), (6) statistical analysis (e.g., bootstrap confidence intervals, collinearity and resid [...truncated...]
Author: Takuya Yanagida [aut, cre]
Maintainer: Takuya Yanagida <takuya.yanagida@univie.ac.at>
Diff between misty versions 0.8.0 dated 2026-01-18 and 0.8.1 dated 2026-03-06
DESCRIPTION | 13 MD5 | 52 - NAMESPACE | 2 NEWS.md | 23 R/coeff.robust.R | 64 +- R/coeff.std.R | 8 R/df.check.R | 1 R/difftest.chibarsq.R |only R/item.alpha.R | 2 R/item.cfa.R | 2 R/item.invar.R | 237 ++++--- R/item.noninvar.R |only R/multilevel.cfa.R | 2 R/multilevel.r2.R | 2 R/print.misty.object.R | 1457 ++++++++++++++++++++++++++++++++++++++-------- R/start_message.R | 2 R/summa.R | 793 ++++++++++++++++++++----- R/utils.R | 338 ++++++++++ R/write.result.R | 1316 +++++++++++++++++++++++++++++------------ R/write.xlsx.R | 13 man/coeff.robust.Rd | 19 man/difftest.chibarsq.Rd |only man/item.alpha.Rd | 2 man/item.cfa.Rd | 5 man/item.invar.Rd | 72 +- man/item.noninvar.Rd |only man/print.misty.object.Rd | 6 man/summa.Rd | 109 +-- man/write.result.Rd | 18 29 files changed, 3496 insertions(+), 1062 deletions(-)
Title: Interactive Maps with 'Mapbox GL JS' and 'MapLibre GL JS'
Description: Provides an interface to the 'Mapbox GL JS' (<https://docs.mapbox.com/mapbox-gl-js/guides>)
and the 'MapLibre GL JS' (<https://maplibre.org/maplibre-gl-js/docs/>) interactive mapping libraries to help users
create custom interactive maps in R. Users can create interactive globe visualizations; layer 'sf' objects to create
filled maps, circle maps, 'heatmaps', and three-dimensional graphics; and customize map styles and views. The package
also includes utilities to use 'Mapbox' and 'MapLibre' maps in 'Shiny' web applications.
Author: Kyle Walker [aut, cre]
Maintainer: Kyle Walker <kyle@walker-data.com>
Diff between mapgl versions 0.4.4 dated 2026-01-12 and 0.4.5 dated 2026-03-06
DESCRIPTION | 8 MD5 | 44 - NAMESPACE | 2 NEWS.md | 22 R/legends.R | 24 R/legends_compare.R | 3 R/style_helpers.R | 312 ++++++++++ inst/htmlwidgets/lib/legend-interactivity/legend-interactivity.css | 42 + inst/htmlwidgets/lib/legend-interactivity/legend-interactivity.js | 230 ++++++- inst/htmlwidgets/lib/mapbox-pmtiles/pmtiles-source-optimized-v2.js | 8 inst/htmlwidgets/lib/maplibre-gl/maplibre-gl.css | 2 inst/htmlwidgets/lib/maplibre-gl/maplibre-gl.js | 8 inst/htmlwidgets/lib/pmtiles/pmtiles.js | 2 inst/htmlwidgets/mapboxgl.js | 74 +- inst/htmlwidgets/mapboxgl.yaml | 10 inst/htmlwidgets/mapboxgl_compare.js | 45 - inst/htmlwidgets/mapboxgl_compare.yaml | 6 inst/htmlwidgets/maplibregl.js | 116 ++- inst/htmlwidgets/maplibregl.yaml | 4 inst/htmlwidgets/maplibregl_compare.js | 87 +- inst/htmlwidgets/maplibregl_compare.yaml | 2 man/esri_open_style.Rd |only man/esri_style.Rd |only man/map_legends.Rd | 17 24 files changed, 831 insertions(+), 237 deletions(-)
Title: Implements the Leiden Algorithm via an R Interface
Description: An R interface to the Leiden algorithm, an iterative community detection algorithm on networks. The algorithm is designed to converge to a partition in which all subsets of all communities are locally optimally assigned, yielding communities guaranteed to be connected. The implementation proves to be fast, scales well, and can be run on graphs of millions of nodes (as long as they can fit in memory). The original implementation was constructed as a python interface "leidenalg" found here: <https://github.com/vtraag/leidenalg>. The algorithm was originally described in Traag, V.A., Waltman, L. & van Eck, N.J. "From Louvain to Leiden: guaranteeing well-connected communities". Sci Rep 9, 5233 (2019) <doi:10.1038/s41598-019-41695-z>.
Author: Peter Kharchenko [aut],
Viktor Petukhov [aut],
Yichen Wang [aut],
V.A. Traag [ctb],
Gabor Csardi [ctb],
Tamas Nepusz [ctb],
Minh Van Nguyen [ctb],
Evan Biederstedt [cre, aut]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between leidenAlg versions 1.1.5 dated 2025-04-19 and 1.1.6 dated 2026-03-06
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- README.md | 2 +- src/Makevars | 2 +- src/Makevars.win | 2 +- src/rigraph/rinterface.c | 5 ++++- 6 files changed, 15 insertions(+), 12 deletions(-)
Title: Syntax Highlighting for R Source Code
Description: Provides syntax highlighting for R source code. Currently it
supports LaTeX and HTML output. Source code of other languages is supported
via Andre Simon's highlight package (<https://gitlab.com/saalen/highlight>).
Author: Yihui Xie [aut, cre] ,
Yixuan Qiu [aut],
Christopher Gandrud [ctb],
Qiang Li [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between highr versions 0.11 dated 2024-05-26 and 0.12 dated 2026-03-06
highr-0.11/highr/tests/testit/test-hilight.R |only highr-0.11/highr/tests/testit/test-utils.R |only highr-0.12/highr/DESCRIPTION | 10 +++++----- highr-0.12/highr/MD5 | 18 +++++++++--------- highr-0.12/highr/NAMESPACE | 3 +++ highr-0.12/highr/R/highlight.R | 17 ++++++++++------- highr-0.12/highr/R/utils.R | 5 +++-- highr-0.12/highr/build/vignette.rds |binary highr-0.12/highr/inst/doc/highr-custom.html | 22 ++++++++++------------ highr-0.12/highr/inst/doc/highr-internals.html | 18 ++++++++---------- highr-0.12/highr/tests/testit/test-hilight.md |only highr-0.12/highr/tests/testit/test-utils.md |only 12 files changed, 48 insertions(+), 45 deletions(-)
Title: Descriptive Statistics, Transition Plots, and More
Description: Utilities for common medical-statistics graphics
and tables, including automatic creation of publication-ready "Table 1"
summaries; transition (Sankey) plots; flow-chart helpers that extend the
grid package; Bézier lines and arrows; and a singular-value-decomposition-
based variable-selection method.
Author: Max Gordon [aut, cre]
Maintainer: Max Gordon <max@gforge.se>
Diff between Gmisc versions 3.1.0 dated 2026-01-12 and 3.2.0 dated 2026-03-06
Gmisc-3.1.0/Gmisc/R/boxGrob_prConvert2Coords.R |only Gmisc-3.1.0/Gmisc/R/boxGrob_spread_npc_norm_helpers.R |only Gmisc-3.1.0/Gmisc/tests/testthat/Rplots.pdf |only Gmisc-3.1.0/Gmisc/tests/visual_tests |only Gmisc-3.2.0/Gmisc/DESCRIPTION | 22 Gmisc-3.2.0/Gmisc/MD5 | 200 ++- Gmisc-3.2.0/Gmisc/NAMESPACE | 26 Gmisc-3.2.0/Gmisc/NEWS.md | 11 Gmisc-3.2.0/Gmisc/R/bezierArrowGradient.R | 13 Gmisc-3.2.0/Gmisc/R/boxGrobs_align.R | 291 ++--- Gmisc-3.2.0/Gmisc/R/boxGrobs_align_pr_helpers.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_align_subelement_helpers.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_boxHeaderGrob.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_boxPropGrob.R | 20 Gmisc-3.2.0/Gmisc/R/boxGrobs_connect.R | 109 + Gmisc-3.2.0/Gmisc/R/boxGrobs_connect_pr_helpers.R | 287 ++++ Gmisc-3.2.0/Gmisc/R/boxGrobs_connect_pr_many_to_one_boxes.R | 157 +- Gmisc-3.2.0/Gmisc/R/boxGrobs_connect_pr_many_to_one_fan_in_center_boxes.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_connect_pr_many_to_one_fan_in_on_top_boxes.R | 151 -- Gmisc-3.2.0/Gmisc/R/boxGrobs_connect_pr_one_to_many_boxes.R | 140 +- Gmisc-3.2.0/Gmisc/R/boxGrobs_connect_pr_single_boxes.R | 119 -- Gmisc-3.2.0/Gmisc/R/boxGrobs_connect_strategies.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_distance.R | 19 Gmisc-3.2.0/Gmisc/R/boxGrobs_labelConnector.R | 58 Gmisc-3.2.0/Gmisc/R/boxGrobs_move.R | 160 +- Gmisc-3.2.0/Gmisc/R/boxGrobs_prConvert2Coords.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_prCreateBoxCoordinates.R | 17 Gmisc-3.2.0/Gmisc/R/boxGrobs_print.Gmisc_list_of_boxes.R | 13 Gmisc-3.2.0/Gmisc/R/boxGrobs_private_helpers.R | 276 ++++ Gmisc-3.2.0/Gmisc/R/boxGrobs_s3_align.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_s3_append.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_s3_connect.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_s3_move.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_s3_spread.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_s3_utils.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_spread.R | 339 +++-- Gmisc-3.2.0/Gmisc/R/boxGrobs_spread_npc_norm_helpers.R |only Gmisc-3.2.0/Gmisc/R/boxGrobs_units.R |only Gmisc-3.2.0/Gmisc/R/descGetMissing.R | 20 Gmisc-3.2.0/Gmisc/R/descriptionStats.R | 13 Gmisc-3.2.0/Gmisc/R/flowchart.R |only Gmisc-3.2.0/Gmisc/R/getDescriptionStatsBy_helpers.R |only Gmisc-3.2.0/Gmisc/R/getDescriptionStatsBy_prAddEmptyVals.R | 8 Gmisc-3.2.0/Gmisc/R/mergeDesc_S3_fns.R | 8 Gmisc-3.2.0/Gmisc/R/private_functions.R | 215 +-- Gmisc-3.2.0/Gmisc/R/transitionClass_helpers.R | 59 - Gmisc-3.2.0/Gmisc/R/transitionPlot.R | 12 Gmisc-3.2.0/Gmisc/R/transitionPlot_helpers.R | 4 Gmisc-3.2.0/Gmisc/inst/doc/Descriptives.html | 4 Gmisc-3.2.0/Gmisc/inst/doc/Grid-based_flowcharts.R | 437 +++++-- Gmisc-3.2.0/Gmisc/inst/doc/Grid-based_flowcharts.Rmd | 452 +++++-- Gmisc-3.2.0/Gmisc/inst/doc/Grid-based_flowcharts.html | 581 +++++++--- Gmisc-3.2.0/Gmisc/inst/doc/Transition-class.html | 4 Gmisc-3.2.0/Gmisc/inst/doc/transitionPlot.html | 4 Gmisc-3.2.0/Gmisc/inst/examples/alignBox_ex.R | 27 Gmisc-3.2.0/Gmisc/inst/examples/boxHeaderGrob_example.R |only Gmisc-3.2.0/Gmisc/inst/examples/connectGrob_example.R | 8 Gmisc-3.2.0/Gmisc/inst/examples/moveBox_ex.R | 17 Gmisc-3.2.0/Gmisc/inst/examples/spreadBox_ex.R | 22 Gmisc-3.2.0/Gmisc/man/Gmisc-package.Rd | 2 Gmisc-3.2.0/Gmisc/man/MidDistanceX.Rd |only Gmisc-3.2.0/Gmisc/man/align.Rd | 102 + Gmisc-3.2.0/Gmisc/man/append.Rd |only Gmisc-3.2.0/Gmisc/man/box.Rd | 9 Gmisc-3.2.0/Gmisc/man/boxHeaderGrob.Rd |only Gmisc-3.2.0/Gmisc/man/boxPropGrob.Rd | 9 Gmisc-3.2.0/Gmisc/man/boxShapes.Rd | 9 Gmisc-3.2.0/Gmisc/man/connect.Rd | 72 + Gmisc-3.2.0/Gmisc/man/coords.Rd | 9 Gmisc-3.2.0/Gmisc/man/distance.Rd | 9 Gmisc-3.2.0/Gmisc/man/flowchart.Rd |only Gmisc-3.2.0/Gmisc/man/insert.Rd |only Gmisc-3.2.0/Gmisc/man/labelConnector.Rd | 14 Gmisc-3.2.0/Gmisc/man/move.Rd |only Gmisc-3.2.0/Gmisc/man/moveBox.Rd | 35 Gmisc-3.2.0/Gmisc/man/prConvert2Coords.Rd | 27 Gmisc-3.2.0/Gmisc/man/prDescGetAndValidateDefaultRef.Rd | 2 Gmisc-3.2.0/Gmisc/man/prGetBoxAxisDefaults.Rd | 11 Gmisc-3.2.0/Gmisc/man/prGetStatistics.Rd | 2 Gmisc-3.2.0/Gmisc/man/setConnectorLabels.Rd | 4 Gmisc-3.2.0/Gmisc/man/spread.Rd | 113 + Gmisc-3.2.0/Gmisc/src/Gmisc_lines.cpp | 11 Gmisc-3.2.0/Gmisc/tests/testthat/_snaps |only Gmisc-3.2.0/Gmisc/tests/testthat/test-align-deep-path.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-align-piped-unit-reference.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-align-pipeline-piped-ref.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-align-pipeline.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-align-reference-zero.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-align-single-box.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-align-subelement-connect.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-align-subelement-deep.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-align_pipe.R | 2 Gmisc-3.2.0/Gmisc/tests/testthat/test-bezier-bench.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-boxGrob_move.R | 12 Gmisc-3.2.0/Gmisc/tests/testthat/test-boxGrob_spread.R | 269 ++-- Gmisc-3.2.0/Gmisc/tests/testthat/test-boxHeaderGrob.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-boxPropGrobs.R | 116 + Gmisc-3.2.0/Gmisc/tests/testthat/test-class-management.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-connectGrob-groups-firstbox.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-connectGrob-vignette-step1.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-connectGrob_N_centered.R | 4 Gmisc-3.2.0/Gmisc/tests/testthat/test-connectGrob_fan_in_center.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-connectGrob_fan_in_top.R | 2 Gmisc-3.2.0/Gmisc/tests/testthat/test-deprecated.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-docx_document.R | 2 Gmisc-3.2.0/Gmisc/tests/testthat/test-flowchart.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-getPval.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-getSvdMostInfluential.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-labelConnector.R | 2 Gmisc-3.2.0/Gmisc/tests/testthat/test-prAddEmptyVals.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-prFindSubelementTarget.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-prGetNpcSize.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-prGetNpcValue.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-prIsNestedListHelpers.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-prLineMidpoint.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-print-Gmisc_list_of_boxes.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-s3-api-design.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-setConnectorLabels.R | 2 Gmisc-3.2.0/Gmisc/tests/testthat/test-spread-horiz-endpoint.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-spread-move-deep-path.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-transitionPlot.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-vdiffr-connect.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-vdiffr.R |only Gmisc-3.2.0/Gmisc/tests/testthat/test-yaml_hmisc_helpers.R |only Gmisc-3.2.0/Gmisc/vignettes/Grid-based_flowcharts.Rmd | 452 +++++-- 125 files changed, 3799 insertions(+), 1827 deletions(-)