Title: Patient Subgroup Identification for Clinical Drug Development
Description: Implementation of Sequential BATTing (bootstrapping and aggregating of thresholds from trees) for developing threshold-based multivariate (prognostic/predictive) biomarker signatures. Variable selection is automatically built-in. Final signatures are returned with interaction plots for predictive signatures. Cross-validation performance evaluation and testing dataset results are also output. Detail algorithms are described in Huang et al (2017) <doi:10.1002/sim.7236>.
Author: Xin Huang [aut, cre, cph],
Yan Sun [aut],
Saptarshi Chatterjee [aut],
Paul Trow [aut]
Maintainer: Xin Huang <xin.huang@abbvie.com>
Diff between SubgrpID versions 0.12 dated 2024-02-03 and 0.13 dated 2026-03-07
SubgrpID-0.12/SubgrpID/R/filter.R |only SubgrpID-0.12/SubgrpID/man/filter.Rd |only SubgrpID-0.12/SubgrpID/man/filter.glmnet.Rd |only SubgrpID-0.12/SubgrpID/man/filter.unicart.Rd |only SubgrpID-0.12/SubgrpID/man/filter.univariate.Rd |only SubgrpID-0.13/SubgrpID/DESCRIPTION | 9 - SubgrpID-0.13/SubgrpID/MD5 | 20 +- SubgrpID-0.13/SubgrpID/NAMESPACE | 2 SubgrpID-0.13/SubgrpID/R/cross_validation_functions.R | 150 +++++++++++------ SubgrpID-0.13/SubgrpID/R/master_function.R | 48 +++-- SubgrpID-0.13/SubgrpID/R/prefilter_variables.R |only SubgrpID-0.13/SubgrpID/R/sequential_batting.R | 93 +++++++--- SubgrpID-0.13/SubgrpID/man/dot-prefilter_glmnet.Rd |only SubgrpID-0.13/SubgrpID/man/dot-prefilter_unicart.Rd |only SubgrpID-0.13/SubgrpID/man/dot-prefilter_univariate.Rd |only SubgrpID-0.13/SubgrpID/man/prefilter_variables.Rd |only 16 files changed, 218 insertions(+), 104 deletions(-)
Title: Statistical Modeling of Animal Movements
Description: Animal movement models including Moving-Resting Process
with Embedded Brownian Motion
(Yan et al., 2014, <doi:10.1007/s10144-013-0428-8>;
Pozdnyakov et al., 2017, <doi:10.1007/s11009-017-9547-6>),
Brownian Motion with Measurement Error
(Pozdnyakov et al., 2014, <doi:10.1890/13-0532.1>),
Moving-Resting-Handling Process with Embedded Brownian Motion
(Pozdnyakov et al., 2020, <doi:10.1007/s11009-020-09774-1>),
Moving-Resting Process with Measurement Error
(Hu et al., 2021, <doi:10.1111/2041-210X.13694>),
Moving-Moving Process with two Embedded Brownian Motions.
Author: Chaoran Hu [aut, cre],
Vladimir Pozdnyakov [aut],
Jun Yan [aut]
Maintainer: Chaoran Hu <huchaoran.stat@gmail.com>
Diff between smam versions 0.7.2 dated 2024-01-10 and 0.7.3 dated 2026-03-07
DESCRIPTION | 8 +- MD5 | 12 ++-- NEWS.md | 4 + configure | 18 +++--- configure.ac | 2 inst/CITATION | 10 +-- src/RcppExports.cpp | 154 ++++++++++++++++++++++++++-------------------------- 7 files changed, 106 insertions(+), 102 deletions(-)
Title: A Collection of Efficient and Extremely Fast R Functions II
Description: A collection of fast statistical and utility functions for data analysis. Functions for regression, maximum likelihood, column-wise statistics and many more have been included. C++ has been utilized to speed up the functions. References: Tsagris M., Papadakis M. (2018). Taking R to its limits: 70+ tips. PeerJ Preprints 6:e26605v1 <doi:10.7287/peerj.preprints.26605v1>.
Author: Manos Papadakis [aut, cre, cph],
Michail Tsagris [aut],
Stefanos Fafalios [aut],
Marios Dimitriadis [aut],
Manos Lasithiotakis [aut],
Nikolaos Kontemeniotis [ctb]
Maintainer: Manos Papadakis <rfastofficial@gmail.com>
Diff between Rfast2 versions 0.1.5.5 dated 2025-10-14 and 0.1.5.6 dated 2026-03-07
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- NEWS.md | 15 +++++++++++++++ R/kernel.R | 3 +++ build/partial.rdb |binary inst/include/Rfast2/helpers.hpp | 6 +++--- inst/include/Rfast2/matrix.hpp | 4 ++-- inst/include/Rfast2/templates.h | 26 +++++++++++++------------- inst/include/Rfast2/templates_rfast2.h | 6 +++--- inst/include/Rfast2/vector.hpp | 16 ++++++++-------- man/boot.james.Rd | 5 ++--- man/boot.student2.Rd | 5 ++--- man/moranI.Rd | 7 ++++--- src/Random.cpp | 4 ++-- src/Random.h | 6 +++--- src/mn.cpp | 4 ++-- 16 files changed, 81 insertions(+), 64 deletions(-)
Title: Multimodal Access and Interactive Data Representation
Description: Provides accessible, interactive visualizations through the 'MAIDR'
(Multimodal Access and Interactive Data Representation) system. Converts
'ggplot2' and Base R plots into accessible HTML/SVG formats with keyboard
navigation, screen reader support, and 'sonification' capabilities. Supports
bar charts (simple, grouped, stacked), histograms, line plots, scatter plots,
box plots, violin plots, heat maps, density/smooth curves, faceted plots,
multi-panel layouts (including patchwork), and multi-layered plot combinations. Enables
data exploration for users with visual impairments through multiple sensory
modalities. For more details see the 'MAIDR' project
<https://maidr.ai/>.
Author: JooYoung Seo [aut, cph],
Niranjan Kalaiselvan [aut, cre]
Maintainer: Niranjan Kalaiselvan <nk46@illinois.edu>
Diff between maidr versions 0.1.2 dated 2026-02-23 and 0.2.0 dated 2026-03-07
maidr-0.1.2/maidr/inst/htmlwidgets/lib/maidr-3.50.0 |only maidr-0.2.0/maidr/DESCRIPTION | 10 maidr-0.2.0/maidr/MD5 | 134 +- maidr-0.2.0/maidr/NAMESPACE | 35 maidr-0.2.0/maidr/NEWS.md | 32 maidr-0.2.0/maidr/R/base_r_function_patching.R | 82 + maidr-0.2.0/maidr/R/base_r_wrapper_exports.R |only maidr-0.2.0/maidr/R/ggplot2_adapter.R | 4 maidr-0.2.0/maidr/R/ggplot2_bar_layer_processor.R | 70 - maidr-0.2.0/maidr/R/ggplot2_dodged_bar_layer_processor.R | 25 maidr-0.2.0/maidr/R/ggplot2_plot_orchestrator.R | 87 + maidr-0.2.0/maidr/R/ggplot2_print_method.R |only maidr-0.2.0/maidr/R/ggplot2_processor_factory.R | 3 maidr-0.2.0/maidr/R/ggplot2_stacked_bar_layer_processor.R | 179 +++ maidr-0.2.0/maidr/R/ggplot2_system_init.R | 35 maidr-0.2.0/maidr/R/ggplot2_violin_layer_processor.R |only maidr-0.2.0/maidr/R/html_dependencies.R | 2 maidr-0.2.0/maidr/R/knitr_support.R | 116 +- maidr-0.2.0/maidr/R/layer_processor.R | 18 maidr-0.2.0/maidr/R/maidr.R | 20 maidr-0.2.0/maidr/R/maidr_options.R |only maidr-0.2.0/maidr/R/rdp_utils.R |only maidr-0.2.0/maidr/R/svg_utils.R | 154 +++ maidr-0.2.0/maidr/README.md | 10 maidr-0.2.0/maidr/inst/doc/getting-started.html | 4 maidr-0.2.0/maidr/inst/doc/plot-types.R | 28 maidr-0.2.0/maidr/inst/doc/plot-types.Rmd | 40 maidr-0.2.0/maidr/inst/doc/plot-types.html | 461 +++++----- maidr-0.2.0/maidr/inst/doc/shiny-integration.html | 4 maidr-0.2.0/maidr/inst/examples/ggplot2/violin.R |only maidr-0.2.0/maidr/inst/examples/ggplot2_all_plot_types_example.R | 52 - maidr-0.2.0/maidr/inst/htmlwidgets/lib/maidr-3.55.2 |only maidr-0.2.0/maidr/inst/htmlwidgets/maidr.yaml | 4 maidr-0.2.0/maidr/man/BaseRBarplotLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/BaseRBoxplotLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/BaseRDodgedBarLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/BaseRHeatmapLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/BaseRHistogramLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/BaseRLineLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/BaseRPointLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/BaseRSmoothLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/BaseRStackedBarLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/BaseRUnknownLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2BarLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2BoxplotLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2DodgedBarLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2HeatmapLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2HistogramLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2LineLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2PointLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2SmoothLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2StackedBarProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2UnknownLayerProcessor.Rd | 2 maidr-0.2.0/maidr/man/Ggplot2ViolinLayerProcessor.Rd |only maidr-0.2.0/maidr/man/LayerProcessor.Rd | 39 maidr-0.2.0/maidr/man/base-r-wrappers.Rd |only maidr-0.2.0/maidr/man/cancel_auto_show.Rd |only maidr-0.2.0/maidr/man/dot-maidr_ggplot_state.Rd |only maidr-0.2.0/maidr/man/dot-maidr_patching_env.Rd | 2 maidr-0.2.0/maidr/man/initialize_maidr_options.Rd |only maidr-0.2.0/maidr/man/inject_violin_kde_svg_coords.Rd |only maidr-0.2.0/maidr/man/is_base_r_enabled.Rd |only maidr-0.2.0/maidr/man/is_ggplot2_enabled.Rd |only maidr-0.2.0/maidr/man/is_maidr_enabled.Rd |only maidr-0.2.0/maidr/man/maidr-options.Rd |only maidr-0.2.0/maidr/man/maidr_off.Rd | 4 maidr-0.2.0/maidr/man/maidr_on.Rd | 12 maidr-0.2.0/maidr/man/maidr_print_ggplot.Rd |only maidr-0.2.0/maidr/man/perpendicular_distance.Rd |only maidr-0.2.0/maidr/man/rdp.Rd |only maidr-0.2.0/maidr/man/register_ggplot2_print_method.Rd |only maidr-0.2.0/maidr/man/restore_ggplot2_print_method.Rd |only maidr-0.2.0/maidr/man/save_html.Rd | 10 maidr-0.2.0/maidr/man/schedule_auto_show.Rd |only maidr-0.2.0/maidr/man/show.Rd | 10 maidr-0.2.0/maidr/man/simplify_curve.Rd |only maidr-0.2.0/maidr/tests/testthat/Rplots.pdf |binary maidr-0.2.0/maidr/tests/testthat/helper.R | 13 maidr-0.2.0/maidr/tests/testthat/test-ggplot2-violin-layer-processor.R |only maidr-0.2.0/maidr/vignettes/plot-types.Rmd | 40 80 files changed, 1359 insertions(+), 420 deletions(-)
Title: Language Server Protocol
Description: An implementation of the Language Server Protocol
for R. The Language Server protocol is used by an editor client to
integrate features like auto completion. See
<https://microsoft.github.io/language-server-protocol/> for details.
Author: Randy Lai [aut, cre],
Kun Ren [ctb]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between languageserver versions 0.3.16 dated 2023-08-18 and 0.3.17 dated 2026-03-07
DESCRIPTION | 20 - MD5 | 110 ++++--- NAMESPACE | 1 NEWS.md | 30 ++ R/capabilities.R | 22 + R/code_action.R | 15 - R/completion.R | 160 ++++++++++- R/definition.R | 8 R/diagnostics.R | 61 ++++ R/document.R | 108 ++++++- R/folding.R | 12 R/formatting.R | 9 R/handlers-langfeatures.R | 74 +++++ R/handlers-textsync.R | 19 - R/hover.R | 8 R/interfaces.R | 25 + R/languageserver.R | 89 +++--- R/references.R | 117 +++++--- R/rename.R | 98 +++---- R/section.R | 14 - R/selection.R | 68 ++-- R/semantic.R |only R/session.R | 253 ------------------ R/settings.R | 4 R/signature.R | 369 ++++++++++++++++++++++++++ R/symbol.R | 92 +++++- R/task.R | 215 +++++++++++---- R/type_hierarchy.R |only R/utils.R | 88 ++++-- R/workspace.R | 19 + README.md | 39 +- src/encoding.c |only src/encoding.h |only src/languageserver.c | 10 src/match.c |only src/match.h |only src/semantic.c |only src/semantic.h |only src/token.c |only src/token.h |only tests/testthat/helper-utils.R | 86 +++++- tests/testthat/test-call-hierarchy.R | 10 tests/testthat/test-color.R | 4 tests/testthat/test-completion.R | 442 +++++++++++++++++++++++++++++--- tests/testthat/test-definition-blocks.R |only tests/testthat/test-definition.R | 28 +- tests/testthat/test-folding.R | 16 - tests/testthat/test-formatting.R | 16 - tests/testthat/test-highlight-blocks.R |only tests/testthat/test-highlight.R | 4 tests/testthat/test-hover.R | 52 ++- tests/testthat/test-link.R | 10 tests/testthat/test-lintr.R | 11 tests/testthat/test-references.R | 14 - tests/testthat/test-rename.R | 16 - tests/testthat/test-selection.R | 6 tests/testthat/test-semantic-tokens.R |only tests/testthat/test-signature.R | 186 +++++++++++++ tests/testthat/test-symbol-blocks.R |only tests/testthat/test-symbol.R | 66 ++-- tests/testthat/test-task.R |only tests/testthat/test-type-hierarchy.R |only tests/testthat/test-unicode-path.R | 8 tests/testthat/test-workspace.R | 2 64 files changed, 2304 insertions(+), 830 deletions(-)
More information about languageserver at CRAN
Permanent link
Title: 'ggplot2' Pattern Geoms
Description: Provides 'ggplot2' geoms filled with various patterns. Includes a patterned version of every 'ggplot2' geom that has a region that can be filled with a pattern. Provides a suite of 'ggplot2' aesthetics and scales for controlling pattern appearances. Supports over a dozen builtin patterns (every pattern implemented by 'gridpattern') as well as allowing custom user-defined patterns.
Author: Mike FC [aut],
Trevor L. Davis [aut, cre] ,
ggplot2 authors [aut]
Maintainer: Trevor L. Davis <trevor.l.davis@gmail.com>
Diff between ggpattern versions 1.2.1 dated 2025-08-27 and 1.3.1 dated 2026-03-07
ggpattern-1.2.1/ggpattern/R/zxx.r |only ggpattern-1.3.1/ggpattern/DESCRIPTION | 19 ggpattern-1.3.1/ggpattern/MD5 | 86 +- ggpattern-1.3.1/ggpattern/NAMESPACE | 2 ggpattern-1.3.1/ggpattern/NEWS.md | 49 + ggpattern-1.3.1/ggpattern/R/a-geom-docs.R | 1 ggpattern-1.3.1/ggpattern/R/aaa-ggplot2-compat-plyr.R | 5 ggpattern-1.3.1/ggpattern/R/geom-.R | 2 ggpattern-1.3.1/ggpattern/R/geom-bar.R | 79 -- ggpattern-1.3.1/ggpattern/R/geom-bin2d.R | 29 ggpattern-1.3.1/ggpattern/R/geom-boxplot.R | 154 ++-- ggpattern-1.3.1/ggpattern/R/geom-col.R | 32 ggpattern-1.3.1/ggpattern/R/geom-crossbar.R | 49 + ggpattern-1.3.1/ggpattern/R/geom-density.R | 52 - ggpattern-1.3.1/ggpattern/R/geom-histogram.R | 33 ggpattern-1.3.1/ggpattern/R/geom-map.R | 12 ggpattern-1.3.1/ggpattern/R/geom-polygon.R | 51 - ggpattern-1.3.1/ggpattern/R/geom-rect.R | 43 - ggpattern-1.3.1/ggpattern/R/geom-ribbon.R | 123 --- ggpattern-1.3.1/ggpattern/R/geom-sf.R | 60 - ggpattern-1.3.1/ggpattern/R/geom-tile.R | 52 - ggpattern-1.3.1/ggpattern/R/geom-violin.R | 97 +- ggpattern-1.3.1/ggpattern/R/zxx.R |only ggpattern-1.3.1/ggpattern/R/zzz.R | 2 ggpattern-1.3.1/ggpattern/build/vignette.rds |binary ggpattern-1.3.1/ggpattern/inst/doc/developing-patterns.html | 93 +- ggpattern-1.3.1/ggpattern/inst/doc/patterns-noise.html | 377 +++++----- ggpattern-1.3.1/ggpattern/inst/doc/patterns-points.html | 193 ++--- ggpattern-1.3.1/ggpattern/inst/doc/patterns-stripes.html | 223 +++-- ggpattern-1.3.1/ggpattern/man/geom-docs.Rd | 189 +++-- ggpattern-1.3.1/ggpattern/man/ggpattern-ggproto.Rd | 12 ggpattern-1.3.1/ggpattern/man/scale_continuous.Rd | 2 ggpattern-1.3.1/ggpattern/man/scale_discrete.Rd | 2 ggpattern-1.3.1/ggpattern/man/scale_pattern_alpha_continuous.Rd | 2 ggpattern-1.3.1/ggpattern/man/scale_pattern_colour_brewer.Rd | 4 ggpattern-1.3.1/ggpattern/man/scale_pattern_colour_continuous.Rd | 4 ggpattern-1.3.1/ggpattern/man/scale_pattern_colour_gradient.Rd | 4 ggpattern-1.3.1/ggpattern/man/scale_pattern_colour_grey.Rd | 4 ggpattern-1.3.1/ggpattern/man/scale_pattern_colour_hue.Rd | 4 ggpattern-1.3.1/ggpattern/man/scale_pattern_colour_viridis_d.Rd | 4 ggpattern-1.3.1/ggpattern/man/scale_pattern_identity.Rd | 4 ggpattern-1.3.1/ggpattern/man/scale_pattern_linetype.Rd | 2 ggpattern-1.3.1/ggpattern/man/scale_pattern_manual.Rd | 4 ggpattern-1.3.1/ggpattern/man/scale_pattern_shape.Rd | 2 ggpattern-1.3.1/ggpattern/man/scale_pattern_size_continuous.Rd | 2 45 files changed, 1124 insertions(+), 1039 deletions(-)
Title: Efficient Bayesian Inference for Stochastic Volatility (SV)
Models
Description: Efficient algorithms for fully Bayesian estimation of stochastic volatility (SV) models with and without asymmetry (leverage) via Markov chain Monte Carlo (MCMC) methods. Methodological details are given in Kastner and Frühwirth-Schnatter (2014) <doi:10.1016/j.csda.2013.01.002> and Hosszejni and Kastner (2019) <doi:10.1007/978-3-030-30611-3_8>; the most common use cases are described in Hosszejni and Kastner (2021) <doi:10.18637/jss.v100.i12> and Kastner (2016) <doi:10.18637/jss.v069.i05> and the package examples.
Author: Darjus Hosszejni [aut, cre] ,
Gregor Kastner [aut]
Maintainer: Darjus Hosszejni <darjus.hosszejni@icloud.com>
Diff between stochvol versions 3.2.8 dated 2025-10-13 and 3.2.9 dated 2026-03-07
DESCRIPTION | 6 ++--- MD5 | 48 +++++++++++++++++++++--------------------- NEWS.md | 5 ++++ build/partial.rdb |binary build/vignette.rds |binary data/exrates.RData |binary inst/doc/article.Rnw | 4 +-- inst/doc/article.pdf |binary inst/doc/article2.Rnw | 2 - inst/doc/article2.pdf |binary inst/doc/ref1.bib | 13 +++++------ inst/doc/ref2.bib | 6 ++--- inst/include/adaptation.hpp | 4 +-- src/sampling_latent_states.cc | 2 - src/sampling_main.cc | 8 +++---- src/sampling_parameters.cc | 6 ++--- src/single_update.cc | 2 - src/utils.h | 6 ++--- src/utils_main.cc | 30 +++++++++++++------------- src/utils_main.h | 2 - src/utils_parameters.cc | 14 ++++++------ vignettes/article.Rnw | 4 +-- vignettes/article2.Rnw | 2 - vignettes/ref1.bib | 13 +++++------ vignettes/ref2.bib | 6 ++--- 25 files changed, 93 insertions(+), 90 deletions(-)
Title: R Interface to the 'Protocol Buffers' 'API' (Version 2 or 3)
Description: Protocol Buffers are a way of encoding structured data in an
efficient yet extensible format. Google uses Protocol Buffers for almost all
of its internal 'RPC' protocols and file formats. Additional documentation
is available in two included vignettes one of which corresponds to our 'JSS'
paper (2016, <doi:10.18637/jss.v071.i02>. A sufficiently recent version of
'Protocol Buffers' library is required; currently version 3.3.0 from 2017
is the tested minimum.
Author: Romain Francois [aut] ,
Dirk Eddelbuettel [aut, cre] ,
Murray Stokely [aut] ,
Jeroen Ooms [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RProtoBuf versions 0.4.25 dated 2026-01-11 and 0.4.26 dated 2026-03-07
ChangeLog | 32 +++++++++++++++++++++ DESCRIPTION | 13 ++++---- MD5 | 18 ++++++------ NAMESPACE | 54 ++++++++++++++++++------------------ configure | 26 ++++++++--------- configure.ac | 10 +++--- inst/NEWS.Rd | 11 +++++++ src/lookup.cpp | 2 - src/rprotobuf.h | 2 - src/wrapper_ZeroCopyInputStream.cpp | 2 - 10 files changed, 106 insertions(+), 64 deletions(-)
Title: Correct Bias in DNA Methylation Analyses
Description: Implementation of the algorithms (with minor modifications)
to correct bias in quantitative DNA methylation analyses as described
by Moskalev et al. (2011) <doi:10.1093/nar/gkr213>. Publication:
Kapsner et al. (2021) <doi:10.1002/ijc.33681>.
Author: Lorenz A. Kapsner [cre, aut, cph] ,
Evgeny A. Moskalev [aut]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between rBiasCorrection versions 0.3.5 dated 2025-04-05 and 0.3.6 dated 2026-03-07
DESCRIPTION | 18 +- MD5 | 22 +-- NAMESPACE | 1 R/utils.R | 3 R/zzz.R | 1 build/partial.rdb |binary build/vignette.rds |binary inst/doc/rBiasCorrection_benchmarking.R | 2 inst/doc/rBiasCorrection_benchmarking.html | 187 +++++++++++++++++++++++------ inst/doc/rBiasCorrection_benchmarking.qmd | 2 inst/doc/rBiasCorrection_howto.html | 187 +++++++++++++++++++++++------ vignettes/rBiasCorrection_benchmarking.qmd | 2 12 files changed, 322 insertions(+), 103 deletions(-)
More information about rBiasCorrection at CRAN
Permanent link
Title: Methods and Classes for the OMOP Common Data Model
Description: Provides definitions of core classes and methods used by analytic
pipelines that query the OMOP (Observational Medical Outcomes Partnership)
common data model.
Author: Marti Catala [aut, cre] ,
Edward Burn [aut] ,
Mike Du [ctb] ,
Yuchen Guo [ctb] ,
Adam Black [ctb] ,
Marta Alcalde-Herraiz [ctb]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between omopgenerics versions 1.3.6 dated 2026-01-28 and 1.3.7 dated 2026-03-07
DESCRIPTION | 6 MD5 | 18 NEWS.md | 5 R/classCdmReference.R | 5 R/classOmopTable.R | 7 R/importConceptSetExpression.R | 8 build/vignette.rds |binary inst/doc/cohorts.html | 2 inst/doc/logging.html | 137 +++--- inst/doc/summarised_result.html | 886 ++++++++++++++++++++-------------------- 10 files changed, 541 insertions(+), 533 deletions(-)
Title: Multidimensional Item Response Theory
Description: Analysis of discrete response data using
unidimensional and multidimensional item analysis models under the Item
Response Theory paradigm (Chalmers (2012) <doi:10.18637/jss.v048.i06>).
Exploratory and confirmatory item factor analysis models
are estimated with quadrature (EM) or stochastic (MHRM) methods. Confirmatory
bi-factor and two-tier models are available for modeling item testlets using
dimension reduction EM algorithms, while multiple group analyses and
mixed effects designs are included for detecting differential item, bundle,
and test functioning, and for modeling item and person covariates.
Finally, latent class models such as the DINA, DINO, multidimensional latent class,
mixture IRT models, and zero-inflated response models are supported, as well
as a wide family of probabilistic unfolding models.
Author: Phil Chalmers [aut, cre] ,
Joshua Pritikin [ctb],
Alexander Robitzsch [ctb],
Mateusz Zoltak [ctb],
KwonHyun Kim [ctb],
Carl F. Falk [ctb],
Adam Meade [ctb],
Lennart Schneider [ctb],
David King [ctb],
Chen-Wei Liu [ctb],
Ogreden Oguzhan [ctb],
Samuel [...truncated...]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between mirt versions 1.45.1 dated 2025-09-06 and 1.46.1 dated 2026-03-07
DESCRIPTION | 36 +++--- MD5 | 122 +++++++++++----------- NAMESPACE | 6 + NEWS.md | 25 ++++ R/02a-general_methods.R | 51 +++++++++ R/02b-item_methods.R | 9 - R/03-estimation.R | 24 ++-- R/06-LoadPars.R | 16 +-- R/DIF.R | 18 +-- R/DRF.R | 53 +++++++++ R/M2.R | 4 R/MHRM.group.R | 75 ++++++++------ R/MHRM.utils.R | 27 ++--- R/MultipleGroup-methods.R | 20 +++ R/PLCI.mirt.R | 4 R/RCI.R | 70 ++++++++++++- R/RMSD_DIF.R | 2 R/SingleGroup-methods.R | 49 ++++++--- R/averageMI.R | 2 R/boot.LR.R | 2 R/extract.group.R | 5 R/extract.item.R | 9 + R/extract.mirt.R | 20 +++ R/fscores.R | 2 R/fscores.internal.R | 25 ---- R/itemfit.R | 17 ++- R/marginal_moments.R |only R/mdirt.R | 9 + R/mirt-package.R | 37 ++++++ R/mirt.R | 129 ++++++++++++++++++------ R/mirtCluster.R | 69 +++++++++--- R/multipleGroup.R | 89 ++++++++++++++-- R/read.mirt.R | 2 R/utils.R | 70 +++++++++---- R/wald.R | 2 README.md | 13 -- inst/doc/mirt-vignettes.html | 2 man/DIF.Rd | 7 - man/DRF.Rd | 12 +- man/LSAT7.Rd | 19 +++ man/PLCI.mirt.Rd | 4 man/RCI.Rd | 38 ++++++- man/SAT12.Rd | 15 ++ man/boot.LR.Rd | 2 man/extract.item.Rd | 5 man/extract.mirt.Rd | 10 + man/fscores.Rd | 2 man/head.mirt_matrix.Rd |only man/marginal_moments.Rd |only man/mdirt.Rd | 9 + man/mirt.Rd | 128 ++++++++++++++++++------ man/mirtCluster.Rd | 7 - man/multipleGroup.Rd | 60 ++++++++++- man/plot-method.Rd | 10 + man/print.mirt_matrix.Rd | 3 man/residuals-method.Rd | 4 man/tail.mirt_matrix.Rd |only src/Estep.cpp | 186 ++++++++++++++++++++++------------- src/Makevars | 2 src/Makevars.win | 2 src/traceLinePts.cpp | 32 +++--- tests/testthat/test-01-mirtOne.R | 12 +- tests/testthat/test-05-confmirtOne.R | 9 + tests/testthat/test-16-DCIRT.R | 2 64 files changed, 1225 insertions(+), 470 deletions(-)
Title: Convolution of Gamma Distributions
Description: Evaluation for density and distribution function of convolution of gamma
distributions in R. Two related exact methods and one approximate method are
implemented with efficient algorithm and C++ code. A quick guide for choosing
correct method and usage of this package is given in package vignette. For the
detail of methods used in this package, we refer the user to
Mathai(1982)<doi:10.1007/BF02481056>,
Moschopoulos(1984)<doi:10.1007/BF02481123>,
Barnabani(2017)<doi:10.1080/03610918.2014.963612>,
Hu et al.(2020)<doi:10.1007/s00180-019-00924-9>.
Author: Chaoran Hu [aut, cre],
Vladimir Pozdnyakov [ths],
Jun Yan [ths]
Maintainer: Chaoran Hu <huchaoran.stat@gmail.com>
Diff between coga versions 1.2.2 dated 2024-01-10 and 1.2.3 dated 2026-03-07
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 8 ++++++++ R/coga.R | 2 +- configure | 18 +++++++++--------- configure.ac | 2 +- inst/CITATION | 8 ++++---- man/coga.Rd | 2 +- src/RcppExports.cpp | 48 ++++++++++++++++++++++++------------------------ 9 files changed, 60 insertions(+), 52 deletions(-)
Title: Clinical Publication
Description: Accelerate the process from clinical data to medical publication,
including clinical data cleaning, significant result screening, and the
generation of publish-ready tables and figures.
Author: Yue Niu [aut, cre, cph] ,
Keyun Wang [aut]
Maintainer: Yue Niu <niuyuesam@163.com>
Diff between clinpubr versions 1.2.0 dated 2026-01-08 and 1.3.0 dated 2026-03-07
DESCRIPTION | 20 - MD5 | 33 +- NAMESPACE | 3 NEWS.md | 31 -- R/baseline_table.R | 15 R/data_overview.R | 12 R/data_screen.R |only R/misc.R | 179 +++++++++++ R/utils.R | 2 README.md | 51 +++ man/data_overview.Rd | 6 man/detect_outliers.Rd | 94 +++--- man/keep_by_keyword.Rd |only man/merge_by_substring.Rd | 98 +++--- man/screen_data_list.Rd |only man/to_wide.Rd |only tests/testthat/test-data_overview.R | 548 ++++++++++++++++++------------------ tests/testthat/test-data_screen.R |only tests/testthat/test-mark_outlier.R | 276 +++++++++--------- tests/testthat/test-misc.R | 105 ++++++ 20 files changed, 908 insertions(+), 565 deletions(-)