Title: Static Library and Headers for 'OpenEXR' Image I/O
Description: Provides the 'OpenEXR' static library and 'C++' headers
for high-dynamic-range image I/O (see <https://openexr.com/>)
needed to link R packages against the 'OpenEXR' library, along
with a basic R interface to load 'EXR' images.
Author: Tyler Morgan-Wall [aut, cre] ,
Aaron Demolder [ctb, cph],
Abe Fettig [ctb, cph],
Aloys Baillet [ctb, cph],
Andre Mazzone [ctb, cph],
Andrew Kunz [ctb, cph],
Anton Dukhovnikov [ctb, cph],
Antonio Rojas [ctb, cph],
Aras Pranckevicius [ctb, cph],
Arkady [...truncated...]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
This is a re-admission after prior archival of version 3.4.0-5 dated 2025-10-16
Diff between libopenexr versions 3.4.0-5 dated 2025-10-16 and 3.4.4-1 dated 2026-03-09
libopenexr-3.4.0-5/libopenexr/src/OpenEXR/src/lib/OpenEXR/b44ExpLogTable.cpp |only libopenexr-3.4.0-5/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/dwaLookups.h |only libopenexr-3.4.4-1/libopenexr/DESCRIPTION | 8 libopenexr-3.4.4-1/libopenexr/MD5 | 375 libopenexr-3.4.4-1/libopenexr/inst/include/OpenEXR/IexConfig.h | 2 libopenexr-3.4.4-1/libopenexr/inst/include/OpenEXR/IexMacros.h | 3 libopenexr-3.4.4-1/libopenexr/inst/include/OpenEXR/IlmThreadConfig.h | 2 libopenexr-3.4.4-1/libopenexr/inst/include/OpenEXR/IlmThreadProcessGroup.h | 4 libopenexr-3.4.4-1/libopenexr/inst/include/OpenEXR/ImfAttribute.h | 8 libopenexr-3.4.4-1/libopenexr/inst/include/OpenEXR/ImfBytesAttribute.h |only libopenexr-3.4.4-1/libopenexr/inst/include/OpenEXR/ImfCRgbaFile.h | 4 libopenexr-3.4.4-1/libopenexr/inst/include/OpenEXR/ImfCompression.h | 6 libopenexr-3.4.4-1/libopenexr/inst/include/OpenEXR/ImfHTCompressor.h |only libopenexr-3.4.4-1/libopenexr/inst/include/OpenEXR/ImfIDManifestAttribute.h | 4 libopenexr-3.4.4-1/libopenexr/inst/include/OpenEXR/ImfMatrixAttribute.h | 8 libopenexr-3.4.4-1/libopenexr/inst/include/OpenEXR/ImfName.h | 6 libopenexr-3.4.4-1/libopenexr/inst/include/OpenEXR/ImfStandardAttributes.h | 21 libopenexr-3.4.4-1/libopenexr/inst/include/OpenEXR/ImfVecAttribute.h | 8 libopenexr-3.4.4-1/libopenexr/inst/include/OpenEXR/OpenEXRConfig.h | 24 libopenexr-3.4.4-1/libopenexr/inst/include/OpenEXR/openexr_attr.h | 15 libopenexr-3.4.4-1/libopenexr/inst/include/OpenEXR/openexr_config.h | 6 libopenexr-3.4.4-1/libopenexr/inst/include/OpenEXR/openexr_part.h | 12 libopenexr-3.4.4-1/libopenexr/inst/include/OpenEXR/openexr_version.h | 4 libopenexr-3.4.4-1/libopenexr/src/Makevars.in | 59 libopenexr-3.4.4-1/libopenexr/src/Makevars.win.in | 89 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/CMakeLists.txt | 13 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/cmake/CMakeLists.txt | 9 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/cmake/LibraryDefine.cmake | 33 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/cmake/OpenEXR.pc.in | 2 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/cmake/OpenEXRConfig.cmake.in | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/cmake/OpenEXRConfig.h.in | 18 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/cmake/OpenEXRConfigInternal.h.in | 13 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/cmake/OpenEXRSetup.cmake | 171 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/cmake/Toolchain-mingw.cmake | 28 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/cmake/cmake_uninstall.cmake.in | 5 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/external |only libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/Iex/IexBaseExc.cpp | 18 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/Iex/IexMacros.h | 3 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/Iex/IexThrowErrnoExc.cpp | 2 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/IlmThread/IlmThreadPool.cpp | 47 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/IlmThread/IlmThreadProcessGroup.h | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/CMakeLists.txt | 64 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfAttribute.h | 8 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfBoxAttribute.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfBytesAttribute.cpp |only libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfBytesAttribute.h |only libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfCRgbaFile.cpp | 2 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfCRgbaFile.h | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfChannelListAttribute.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfChromaticities.cpp | 2 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfChromaticitiesAttribute.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfCompression.cpp | 14 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfCompression.h | 6 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfCompressionAttribute.cpp | 2 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfCompressor.cpp | 17 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfContext.cpp | 9 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfContextInit.cpp | 6 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfDeepImageStateAttribute.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfDeepScanLineInputFile.cpp | 6 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfDoubleAttribute.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfEnvmapAttribute.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfFloatAttribute.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfFloatVectorAttribute.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfHTCompressor.cpp |only libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfHTCompressor.h |only libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfHeader.cpp | 2 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfIDManifestAttribute.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfIDManifestAttribute.h | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfInputPart.cpp | 2 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfIntAttribute.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfKeyCodeAttribute.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfLineOrderAttribute.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfMatrixAttribute.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfMatrixAttribute.h | 8 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfMisc.cpp | 104 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfName.h | 6 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfOpaqueAttribute.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfPreviewImageAttribute.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfRationalAttribute.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfScanLineInputFile.cpp | 1 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfStandardAttributes.cpp | 5 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfStandardAttributes.h | 21 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfStdIO.cpp | 41 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfStringAttribute.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfStringVectorAttribute.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfTileDescriptionAttribute.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfTimeCode.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfTimeCodeAttribute.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfVecAttribute.cpp | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfVecAttribute.h | 8 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/ImfZipCompressor.cpp | 2 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXR/dwaLookups.cpp | 13 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/CMakeLists.txt | 68 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/attributes.c | 14 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/bytes.c |only libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/chunk.c | 77 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/compression.c | 28 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/debug.c | 6 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_attr.h | 1 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_b44.c | 9 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_b44_table.c |14583 ---------- libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_b44_table_init.c |only libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_bytes.h |only libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_compress.h | 8 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_decompress.h | 13 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_dwa_compressor.h | 9 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_dwa_helpers.h | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_dwa_table.c |only libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_dwa_table_init.c |only libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_ht.cpp |only libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_ht_common.cpp |only libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_ht_common.h |only libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_huf.c | 2 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_posix_file_impl.h | 22 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_rle.c | 2 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_structs.c | 30 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_structs.h | 40 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_thread.h |only libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_util.h | 5 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/internal_zip.c | 30 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/openexr_attr.h | 15 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/openexr_config.h | 6 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/openexr_part.h | 12 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/openexr_version.h | 4 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/parse_header.c | 70 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/part_attr.c | 112 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/string.c | 32 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/unpack.c | 515 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRCore/write_header.c | 27 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRUtil/ImfCheckFile.cpp | 25 libopenexr-3.4.4-1/libopenexr/src/OpenEXR/src/lib/OpenEXRUtil/README | 3 libopenexr-3.4.4-1/libopenexr/src/r-api.cpp | 128 libopenexr-3.4.4-1/libopenexr/tools/config.R | 707 libopenexr-3.4.4-1/libopenexr/tools/config/configure.R | 194 libopenexr-3.4.4-1/libopenexr/tools/search-replace.R | 77 135 files changed, 2482 insertions(+), 15879 deletions(-)
Title: Analyze Experimental High-Throughput (Omics) Data
Description: The efficient treatment and convenient analysis of experimental high-throughput (omics) data gets facilitated through this collection of diverse functions.
Several functions address advanced object-conversions, like manipulating lists of lists or lists of arrays, reorganizing lists to arrays or into separate vectors, merging of multiple entries, etc.
Another set of functions provides speed-optimized calculation of standard deviation (sd), coefficient of variance (CV) or standard error of the mean (SEM)
for data in matrixes or means per line with respect to additional grouping (eg n groups of replicates).
A group of functions facilitate dealing with non-redundant information, by indexing unique, adding counters to redundant or eliminating lines with respect redundancy in a given reference-column, etc.
Help is provided to identify very closely matching numeric values to generate (partial) distance matrixes for very big data in a memory efficient manner or to reduce the complexity of larg [...truncated...]
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@gmail.com>
Diff between wrMisc versions 1.15.4 dated 2025-06-18 and 2.0.0 dated 2026-03-09
wrMisc-1.15.4/wrMisc/man/dot-offCenter.Rd |only wrMisc-2.0.0/wrMisc/DESCRIPTION | 8 wrMisc-2.0.0/wrMisc/MD5 | 238 ++--- wrMisc-2.0.0/wrMisc/NAMESPACE | 5 wrMisc-2.0.0/wrMisc/R/addBeforFileExtension.R | 18 wrMisc-2.0.0/wrMisc/R/appendNR.R | 5 wrMisc-2.0.0/wrMisc/R/buildTree.R | 13 wrMisc-2.0.0/wrMisc/R/cbindNR.R | 23 wrMisc-2.0.0/wrMisc/R/checkUnitPrefix.R | 10 wrMisc-2.0.0/wrMisc/R/checkVectLength.R | 2 wrMisc-2.0.0/wrMisc/R/combineOverlapInfo.R | 17 wrMisc-2.0.0/wrMisc/R/combineReplFromListToMatr.R | 8 wrMisc-2.0.0/wrMisc/R/combineSingleT.R | 21 wrMisc-2.0.0/wrMisc/R/completeArrLst.R | 17 wrMisc-2.0.0/wrMisc/R/correctToUnique.R | 2 wrMisc-2.0.0/wrMisc/R/correctWinPath.R | 21 wrMisc-2.0.0/wrMisc/R/countSameStartEnd.R | 24 wrMisc-2.0.0/wrMisc/R/cutToNgrp.R | 17 wrMisc-2.0.0/wrMisc/R/diffCombin.R | 19 wrMisc-2.0.0/wrMisc/R/equLenNumber.R | 16 wrMisc-2.0.0/wrMisc/R/exponNormalize.R | 19 wrMisc-2.0.0/wrMisc/R/extrNumericFromMatr.R | 27 wrMisc-2.0.0/wrMisc/R/extract1chan.R | 14 wrMisc-2.0.0/wrMisc/R/extractLast2numericParts.R | 24 wrMisc-2.0.0/wrMisc/R/filtSizeUniq.R | 14 wrMisc-2.0.0/wrMisc/R/firstOfRepLines.R | 8 wrMisc-2.0.0/wrMisc/R/fuseAnnotMatr.R | 28 wrMisc-2.0.0/wrMisc/R/get1stOfRepeatedByCol.R | 15 wrMisc-2.0.0/wrMisc/R/indexGroupsFromPW.R |only wrMisc-2.0.0/wrMisc/R/linModelSelect.R | 25 wrMisc-2.0.0/wrMisc/R/listGroupsByNames.R | 12 wrMisc-2.0.0/wrMisc/R/matchMatrixLinesToRef.R | 34 wrMisc-2.0.0/wrMisc/R/matchSampToPairw.R | 7 wrMisc-2.0.0/wrMisc/R/mergeMatrices.R | 6 wrMisc-2.0.0/wrMisc/R/mergeW2.R | 70 - wrMisc-2.0.0/wrMisc/R/moderTestXgrp.R | 203 +++- wrMisc-2.0.0/wrMisc/R/nFragments.R | 33 wrMisc-2.0.0/wrMisc/R/naOmit.R | 19 wrMisc-2.0.0/wrMisc/R/nonAmbiguousMat.R | 18 wrMisc-2.0.0/wrMisc/R/nonRedundLines.R | 22 wrMisc-2.0.0/wrMisc/R/normalizeThis.R | 31 wrMisc-2.0.0/wrMisc/R/presenceFilt.R | 114 +- wrMisc-2.0.0/wrMisc/R/presenceGrpFilt.R | 10 wrMisc-2.0.0/wrMisc/R/randIndFx.R | 2 wrMisc-2.0.0/wrMisc/R/regrBy1or2point.R | 33 wrMisc-2.0.0/wrMisc/R/regrMultBy1or2point.R | 25 wrMisc-2.0.0/wrMisc/R/reorgByCluNo.R | 2 wrMisc-2.0.0/wrMisc/R/replPlateCV.R | 24 wrMisc-2.0.0/wrMisc/R/replicateStructure.R | 2 wrMisc-2.0.0/wrMisc/R/rmDupl2colMatr.R | 24 wrMisc-2.0.0/wrMisc/R/rowGrpMeans.R | 15 wrMisc-2.0.0/wrMisc/R/rowNormalize.R | 710 ++++++++--------- wrMisc-2.0.0/wrMisc/R/sampNoDeMArrayLM.R | 70 - wrMisc-2.0.0/wrMisc/R/searchLinesAtGivenSlope.R | 4 wrMisc-2.0.0/wrMisc/R/triCoord.R | 20 wrMisc-2.0.0/wrMisc/R/upperMaCoord.R | 7 wrMisc-2.0.0/wrMisc/R/withinRefRange.R | 17 wrMisc-2.0.0/wrMisc/R/writeCsv.R | 24 wrMisc-2.0.0/wrMisc/build/vignette.rds |binary wrMisc-2.0.0/wrMisc/inst/doc/wrMiscVignette1.R | 26 wrMisc-2.0.0/wrMisc/inst/doc/wrMiscVignette1.Rmd | 42 - wrMisc-2.0.0/wrMisc/inst/doc/wrMiscVignette1.html | 237 +++-- wrMisc-2.0.0/wrMisc/man/appendNR.Rd | 11 wrMisc-2.0.0/wrMisc/man/cbindNR.Rd | 3 wrMisc-2.0.0/wrMisc/man/combineOverlapInfo.Rd | 4 wrMisc-2.0.0/wrMisc/man/combineReplFromListToMatr.Rd | 2 wrMisc-2.0.0/wrMisc/man/combineSingleT.Rd | 12 wrMisc-2.0.0/wrMisc/man/completeArrLst.Rd | 6 wrMisc-2.0.0/wrMisc/man/correctToUnique.Rd | 2 wrMisc-2.0.0/wrMisc/man/correctWinPath.Rd | 13 wrMisc-2.0.0/wrMisc/man/countSameStartEnd.Rd | 20 wrMisc-2.0.0/wrMisc/man/cutToNgrp.Rd | 19 wrMisc-2.0.0/wrMisc/man/diffCombin.Rd | 17 wrMisc-2.0.0/wrMisc/man/dot-checkConvt2Vect.Rd | 4 wrMisc-2.0.0/wrMisc/man/dot-checkFileNameExtensions.Rd | 4 wrMisc-2.0.0/wrMisc/man/dot-complCols.Rd | 4 wrMisc-2.0.0/wrMisc/man/dot-composeCallName.Rd | 4 wrMisc-2.0.0/wrMisc/man/dot-extrNAneighb.Rd | 2 wrMisc-2.0.0/wrMisc/man/dot-filtSize.Rd | 2 wrMisc-2.0.0/wrMisc/man/dot-getPWseparator.Rd |only wrMisc-2.0.0/wrMisc/man/dot-growTree.Rd | 4 wrMisc-2.0.0/wrMisc/man/dot-normConstSlope.Rd | 2 wrMisc-2.0.0/wrMisc/man/dot-pasteCols.Rd | 2 wrMisc-2.0.0/wrMisc/man/dot-rowNorm.Rd | 14 wrMisc-2.0.0/wrMisc/man/dot-rowNormFact.Rd | 4 wrMisc-2.0.0/wrMisc/man/equLenNumber.Rd | 4 wrMisc-2.0.0/wrMisc/man/exponNormalize.Rd | 9 wrMisc-2.0.0/wrMisc/man/extr1chan.Rd | 20 wrMisc-2.0.0/wrMisc/man/extrNumericFromMatr.Rd | 14 wrMisc-2.0.0/wrMisc/man/extractLast2numericParts.Rd | 14 wrMisc-2.0.0/wrMisc/man/filtSizeUniq.Rd | 2 wrMisc-2.0.0/wrMisc/man/firstOfRepLines.Rd | 4 wrMisc-2.0.0/wrMisc/man/fuseAnnotMatr.Rd | 2 wrMisc-2.0.0/wrMisc/man/get1stOfRepeatedByCol.Rd | 2 wrMisc-2.0.0/wrMisc/man/getPWseparator.Rd |only wrMisc-2.0.0/wrMisc/man/indexGroupsFromPW.Rd |only wrMisc-2.0.0/wrMisc/man/linModelSelect.Rd | 9 wrMisc-2.0.0/wrMisc/man/listGroupsByNames.Rd | 4 wrMisc-2.0.0/wrMisc/man/matchSampToPairw.Rd | 9 wrMisc-2.0.0/wrMisc/man/moderTestXgrp.Rd | 53 + wrMisc-2.0.0/wrMisc/man/nFragments.Rd | 21 wrMisc-2.0.0/wrMisc/man/nFragments0.Rd | 14 wrMisc-2.0.0/wrMisc/man/naOmit.Rd | 20 wrMisc-2.0.0/wrMisc/man/nonAmbiguousMat.Rd | 8 wrMisc-2.0.0/wrMisc/man/nonRedundLines.Rd | 14 wrMisc-2.0.0/wrMisc/man/normalizeThis.Rd | 10 wrMisc-2.0.0/wrMisc/man/presenceFilt.Rd | 29 wrMisc-2.0.0/wrMisc/man/presenceGrpFilt.Rd | 13 wrMisc-2.0.0/wrMisc/man/regrBy1or2point.Rd | 19 wrMisc-2.0.0/wrMisc/man/regrMultBy1or2point.Rd | 15 wrMisc-2.0.0/wrMisc/man/reorgByCluNo.Rd | 2 wrMisc-2.0.0/wrMisc/man/replPlateCV.Rd | 10 wrMisc-2.0.0/wrMisc/man/replacePWseparator.Rd |only wrMisc-2.0.0/wrMisc/man/replicateStructure.Rd | 2 wrMisc-2.0.0/wrMisc/man/rmDupl2colMatr.Rd | 20 wrMisc-2.0.0/wrMisc/man/rowGrpMeans.Rd | 25 wrMisc-2.0.0/wrMisc/man/rowNormalize.Rd | 4 wrMisc-2.0.0/wrMisc/man/sampNoDeMArrayLM.Rd | 37 wrMisc-2.0.0/wrMisc/man/triCoord.Rd | 16 wrMisc-2.0.0/wrMisc/man/upperMaCoord.Rd | 10 wrMisc-2.0.0/wrMisc/man/withinRefRange.Rd | 23 wrMisc-2.0.0/wrMisc/man/writeCsv.Rd | 9 wrMisc-2.0.0/wrMisc/vignettes/wrMiscVignette1.Rmd | 42 - 123 files changed, 1922 insertions(+), 1263 deletions(-)
Title: A Magical Framework for Collaborative & Reproducible Data
Analysis
Description: A comprehensive data analysis framework for NIH-funded research that streamlines workflows for both data cleaning and preparing NIH Data Archive ('NDA') submission templates. Provides unified access to multiple data sources ('REDCap', 'MongoDB', 'Qualtrics', 'SQL', 'ORACLE') through interfaces to their APIs, with specialized functions for data cleaning, filtering, merging, and parsing. Features automatic validation, field harmonization, and memory-aware processing to enhance reproducibility in multi-site collaborative research as described in Mittal et al. (2021) <doi:10.20900/jpbs.20210011>.
Author: Joshua G. Kenney [aut, cre],
Trevor F. Williams [aut],
Minerva K. Pappu [aut],
Michael J. Spilka [aut],
Danielle N. Pratt [ctb],
Victor J. Pokorny [ctb],
Santiago Castiello de Obeso [ctb],
Praveen Suthaharan [ctb],
Christian R. Horgan [ctb]
Maintainer: Joshua G. Kenney <joshua.kenney@yale.edu>
Diff between wizaRdry versions 0.6.5 dated 2026-03-04 and 0.6.6 dated 2026-03-09
DESCRIPTION | 6 +- MD5 | 18 +++---- R/createNdaDataDefinition.R | 44 +++--------------- R/createNdaSubmissionTemplate.R | 37 +++------------ R/getRedcap.R | 16 +++--- R/globals.R | 3 - R/ndaFieldRenaming.R | 44 ++++++++++++------ R/ndaFieldSelection.R | 93 +++++++++++++++++++++------------------- R/ndaFileCreation.R | 79 +++++++++++++++++++++++++++++++++ R/zzz.R | 18 +++++++ 10 files changed, 214 insertions(+), 144 deletions(-)
Title: Demographic Modelling Using Projection Matrices
Description: Tools for modelling populations and demography using matrix projection models,
with deterministic and stochastic model implementations. Includes population projection,
indices of short- and long-term population size and growth, perturbation analysis,
convergence to stability or stationarity, and diagnostic and manipulation tools.
Author: Iain Stott [aut, cre],
Dave Hodgson [aut],
Stuart Townley [aut],
Stephen Ellner [ctb]
Maintainer: Iain Stott <iainmstott@gmail.com>
Diff between popdemo versions 1.3-2 dated 2025-04-11 and 1.3-3 dated 2026-03-09
ChangeLog | 5 DESCRIPTION | 8 MD5 | 24 R/popdemo-onAttach.R | 2 R/stoch.R | 60 + build/vignette.rds |binary data/Pbear.rda |binary data/Tort.rda |binary inst/doc/popdemo.R | 15 inst/doc/popdemo.Rmd | 17 inst/doc/popdemo.html | 2194 +++++++++++++++++++++++++++++++------------------- man/stoch.Rd | 20 vignettes/popdemo.Rmd | 17 13 files changed, 1491 insertions(+), 871 deletions(-)
Title: Develop Clinical Prediction Models Using the Common Data Model
Description: A user friendly way to create patient level prediction models using
the Observational Medical Outcomes Partnership Common Data Model. Given a cohort
of interest and an outcome of interest, the package can use data in the Common
Data Model to build a large set of features. These features can then be used to
fit a predictive model with a number of machine learning algorithms. This is
further described in Reps (2017) <doi:10.1093/jamia/ocy032>.
Author: Egill Fridgeirsson [aut, cre],
Jenna Reps [aut],
Martijn Schuemie [aut],
Marc Suchard [aut],
Patrick Ryan [aut],
Peter Rijnbeek [aut],
Observational Health Data Science and Informatics [cph]
Maintainer: Egill Fridgeirsson <e.fridgeirsson@erasmusmc.nl>
Diff between PatientLevelPrediction versions 6.5.1 dated 2025-10-15 and 6.6.0 dated 2026-03-09
PatientLevelPrediction-6.5.1/PatientLevelPrediction/R/RClassifier.R |only PatientLevelPrediction-6.5.1/PatientLevelPrediction/R/SklearnClassifierHelpers.R |only PatientLevelPrediction-6.5.1/PatientLevelPrediction/R/SklearnClassifierSettings.R |only PatientLevelPrediction-6.5.1/PatientLevelPrediction/tests/testthat/test-sklearnClassifierHelpers.R |only PatientLevelPrediction-6.6.0/PatientLevelPrediction/DESCRIPTION | 8 PatientLevelPrediction-6.6.0/PatientLevelPrediction/MD5 | 174 - PatientLevelPrediction-6.6.0/PatientLevelPrediction/NAMESPACE | 5 PatientLevelPrediction-6.6.0/PatientLevelPrediction/NEWS.md | 27 PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/CyclopsModels.R | 98 PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/CyclopsSettings.R | 145 - PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/DataSplitting.R | 41 PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/EvaluatePlp.R | 10 PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/EvaluationSummary.R | 66 PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/ExistingSklearn.R | 76 PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/Fit.R | 415 ++ PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/Glm.R | 107 PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/GradientBoostingMachine.R | 50 PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/HelperFunctions.R | 43 PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/HyperparameterSettings.R |only PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/ImportFromCsv.R | 18 PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/Imputation.R | 1306 ++++++++- PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/LightGBM.R | 64 PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/Predict.R | 12 PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/Recalibration.R | 76 PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/RunMultiplePlp.R | 7 PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/RunPlp.R | 5 PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/SaveLoadPlp.R | 63 PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/SklearnClassifier.R | 1423 +++++++--- PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/SklearnToJson.R | 30 PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/ThresholdSummary.R | 6 PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/uploadToDatabase.R | 48 PatientLevelPrediction-6.6.0/PatientLevelPrediction/R/uploadToDatabaseModelDesign.R | 135 PatientLevelPrediction-6.6.0/PatientLevelPrediction/README.md | 5 PatientLevelPrediction-6.6.0/PatientLevelPrediction/inst/doc/AddingCustomFeatureEngineering.html | 4 PatientLevelPrediction-6.6.0/PatientLevelPrediction/inst/doc/AddingCustomModels.R | 331 -- PatientLevelPrediction-6.6.0/PatientLevelPrediction/inst/doc/AddingCustomModels.Rmd | 434 --- PatientLevelPrediction-6.6.0/PatientLevelPrediction/inst/doc/AddingCustomModels.html | 656 +--- PatientLevelPrediction-6.6.0/PatientLevelPrediction/inst/doc/AddingCustomSamples.html | 4 PatientLevelPrediction-6.6.0/PatientLevelPrediction/inst/doc/AddingCustomSplitting.html | 4 PatientLevelPrediction-6.6.0/PatientLevelPrediction/inst/doc/BenchmarkTasks.html | 4 PatientLevelPrediction-6.6.0/PatientLevelPrediction/inst/doc/BestPractices.html | 4 PatientLevelPrediction-6.6.0/PatientLevelPrediction/inst/doc/BuildingMultiplePredictiveModels.html | 4 PatientLevelPrediction-6.6.0/PatientLevelPrediction/inst/doc/BuildingPredictiveModels.html | 4 PatientLevelPrediction-6.6.0/PatientLevelPrediction/inst/doc/ClinicalModels.html | 4 PatientLevelPrediction-6.6.0/PatientLevelPrediction/inst/doc/ConstrainedPredictors.html | 4 PatientLevelPrediction-6.6.0/PatientLevelPrediction/inst/doc/CreatingLearningCurves.html | 4 PatientLevelPrediction-6.6.0/PatientLevelPrediction/inst/doc/CreatingNetworkStudies.html | 4 PatientLevelPrediction-6.6.0/PatientLevelPrediction/inst/doc/GISExample.html | 4 PatientLevelPrediction-6.6.0/PatientLevelPrediction/inst/doc/InstallationGuide.html | 4 PatientLevelPrediction-6.6.0/PatientLevelPrediction/inst/settings/resultsDataModelSpecification.csv | 5 PatientLevelPrediction-6.6.0/PatientLevelPrediction/inst/sql/postgresql/migrations/Migration_2-add_hyperparameter_settings.sql |only PatientLevelPrediction-6.6.0/PatientLevelPrediction/inst/sql/sql_server/migrations/Migration_2-add_hyperparameter_settings.sql |only PatientLevelPrediction-6.6.0/PatientLevelPrediction/inst/sql/sqlite/migrations/Migration_2-add_hyperparameter_settings.sql |only PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/computeAuprc.Rd |only PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/computeGridPerformance.Rd | 28 PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/createGlmModel.Rd | 5 PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/createHyperparameterSettings.Rd |only PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/createIterativeImputer.Rd | 9 PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/createModelDesign.Rd | 3 PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/createSimpleImputer.Rd | 9 PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/createSklearnIterativeImputer.Rd |only PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/createSklearnModel.Rd | 5 PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/createTuningMetric.Rd |only PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/fitPlp.Rd | 10 PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/listCartesian.Rd | 2 PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/pmmFit.Rd | 4 PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/prepareHyperparameterGrid.Rd |only PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/runPlp.Rd | 3 PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/setAdaBoost.Rd | 5 PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/setDecisionTree.Rd | 2 PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/setMLP.Rd | 2 PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/setNaiveBayes.Rd | 2 PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/setRandomForest.Rd | 2 PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/setRidgeRegression.Rd |only PatientLevelPrediction-6.6.0/PatientLevelPrediction/man/setSVM.Rd | 2 PatientLevelPrediction-6.6.0/PatientLevelPrediction/tests/testthat/setup.R | 10 PatientLevelPrediction-6.6.0/PatientLevelPrediction/tests/testthat/test-LightGBM.R | 92 PatientLevelPrediction-6.6.0/PatientLevelPrediction/tests/testthat/test-UploadToDatabase.R | 240 + PatientLevelPrediction-6.6.0/PatientLevelPrediction/tests/testthat/test-UploadToDatabaseModelDesign.R |only PatientLevelPrediction-6.6.0/PatientLevelPrediction/tests/testthat/test-compatModelSettings.R |only PatientLevelPrediction-6.6.0/PatientLevelPrediction/tests/testthat/test-cyclopsModels.R | 168 - PatientLevelPrediction-6.6.0/PatientLevelPrediction/tests/testthat/test-evaluation.R | 49 PatientLevelPrediction-6.6.0/PatientLevelPrediction/tests/testthat/test-existingModel.R | 43 PatientLevelPrediction-6.6.0/PatientLevelPrediction/tests/testthat/test-fitting.R | 1 PatientLevelPrediction-6.6.0/PatientLevelPrediction/tests/testthat/test-getCalibration.R | 2 PatientLevelPrediction-6.6.0/PatientLevelPrediction/tests/testthat/test-helperfunctions.R | 66 PatientLevelPrediction-6.6.0/PatientLevelPrediction/tests/testthat/test-hyperparameterSettings.R |only PatientLevelPrediction-6.6.0/PatientLevelPrediction/tests/testthat/test-imputation.R | 974 ++++++ PatientLevelPrediction-6.6.0/PatientLevelPrediction/tests/testthat/test-multiplePlp.R | 4 PatientLevelPrediction-6.6.0/PatientLevelPrediction/tests/testthat/test-rclassifier.R | 43 PatientLevelPrediction-6.6.0/PatientLevelPrediction/tests/testthat/test-recalibration.R | 197 + PatientLevelPrediction-6.6.0/PatientLevelPrediction/tests/testthat/test-saveloadplp.R | 10 PatientLevelPrediction-6.6.0/PatientLevelPrediction/tests/testthat/test-sklearnAdaboostParams.R |only PatientLevelPrediction-6.6.0/PatientLevelPrediction/tests/testthat/test-sklearnClassifier.R | 88 PatientLevelPrediction-6.6.0/PatientLevelPrediction/tests/testthat/test-sklearnClassifierSettings.R | 131 PatientLevelPrediction-6.6.0/PatientLevelPrediction/tests/testthat/test-sklearnJson.R | 15 PatientLevelPrediction-6.6.0/PatientLevelPrediction/vignettes/AddingCustomModels.Rmd | 434 --- 97 files changed, 6036 insertions(+), 2565 deletions(-)
More information about PatientLevelPrediction at CRAN
Permanent link
Title: Tests Based on Ordinal Patterns
Description: Ordinal patterns describe the dynamics of a time series by looking at the ranks of subsequent observations. By comparing ordinal patterns of two times series, Schnurr (2014) <doi:10.1007/s00362-013-0536-8> defines a robust and non-parametric dependence measure: the ordinal pattern coefficient. Functions to calculate this and a method to detect a change in the pattern coefficient proposed in Schnurr and Dehling (2017) <doi:10.1080/01621459.2016.1164706> are provided. Furthermore, the package contains a function for calculating the ordinal pattern frequencies. Generalized ordinal patterns as proposed by Schnurr and Fischer (2022) <doi:10.1016/j.csda.2022.107472> are also considered.
Author: Alexander Duerre [aut],
Svenja Fischer [ctb],
Alexander Schnurr [aut],
Angelika Silbernagel [aut, cre]
Maintainer: Angelika Silbernagel <silbernagel@hsu-hh.de>
Diff between ordinalpattern versions 0.2.8 dated 2026-03-06 and 0.2.9 dated 2026-03-09
DESCRIPTION | 6 +++--- MD5 | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-)
More information about ordinalpattern at CRAN
Permanent link
Title: One Sample Mendelian Randomization and Instrumental Variable
Analyses
Description: Useful functions for one-sample (individual level data)
Mendelian randomization and instrumental variable analyses. The
package includes implementations of; the Sanderson and Windmeijer
(2016) <doi:10.1016/j.jeconom.2015.06.004> conditional F-statistic,
the multiplicative structural mean model Hernán and Robins (2006)
<doi:10.1097/01.ede.0000222409.00878.37>, and two-stage predictor
substitution and two-stage residual inclusion estimators explained by
Terza et al. (2008) <doi:10.1016/j.jhealeco.2007.09.009>.
Author: Tom Palmer [aut, cre] ,
Wes Spiller [aut] ,
Eleanor Sanderson [aut] ,
Nicolai Vitt [aut]
Maintainer: Tom Palmer <remlapmot@hotmail.com>
Diff between OneSampleMR versions 0.1.6 dated 2025-05-21 and 0.1.7 dated 2026-03-09
DESCRIPTION | 18 MD5 | 38 - NAMESPACE | 2 NEWS.md | 4 R/fsw.R | 764 +++++++++++++++++++++++++++++++---- R/msmm.R | 177 +++++--- R/tsps.R | 166 +++++-- R/tsri.R | 208 ++++++--- build/partial.rdb |binary build/vignette.rds |binary inst/doc/f-statistic-comparison.R | 24 + inst/doc/f-statistic-comparison.Rmd | 33 + inst/doc/f-statistic-comparison.html | 251 ++++++++--- man/OneSampleMR-package.Rd | 1 man/fsw.Rd | 37 + tests/testthat/test-fsw.R | 182 ++++++-- tests/testthat/test-msmm.R | 63 ++ tests/testthat/test-tsps.R | 61 ++ tests/testthat/test-tsri.R | 84 +++ vignettes/f-statistic-comparison.Rmd | 33 + 20 files changed, 1731 insertions(+), 415 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-22 0.3.1
2025-01-13 0.3.0
Title: Graphics in the Context of Analyzing High-Throughput Data
Description: Additional options for making graphics in the context of analyzing high-throughput data are available here.
This includes automatic segmenting of the current device (eg window) to accommodate multiple new plots,
automatic checking for optimal location of legends in plots, small histograms to insert as legends,
histograms re-transforming axis labels to linear when plotting log2-transformed data,
a violin-plot <doi:10.1080/00031305.1998.10480559> function for a wide variety of input-formats,
principal components analysis (PCA) <doi:10.1080/14786440109462720> with bag-plots <doi:10.1080/00031305.1999.10474494> to highlight and compare the center areas for groups of samples,
generic MA-plots (differential- versus average-value plots) <doi:10.1093/nar/30.4.e15>,
staggered count plots and generation of mouse-over interactive html pages.
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@gmail.com>
Diff between wrGraph versions 1.3.11 dated 2025-08-21 and 1.3.12 dated 2026-03-09
wrGraph-1.3.11/wrGraph/man/dot-levIndex.Rd |only wrGraph-1.3.11/wrGraph/man/dot-sampNoDeMArrayLM.Rd |only wrGraph-1.3.12/wrGraph/DESCRIPTION | 8 wrGraph-1.3.12/wrGraph/MD5 | 30 - wrGraph-1.3.12/wrGraph/NAMESPACE | 2 wrGraph-1.3.12/wrGraph/R/MAplotW.R | 287 ++++++------- wrGraph-1.3.12/wrGraph/R/VolcanoPlotW.R | 372 +++++++----------- wrGraph-1.3.12/wrGraph/R/addBagPlot.R | 37 + wrGraph-1.3.12/wrGraph/R/plotPCAw.R | 36 - wrGraph-1.3.12/wrGraph/R/profileAsClu.R | 2 wrGraph-1.3.12/wrGraph/R/vioplotW.R | 2 wrGraph-1.3.12/wrGraph/build/vignette.rds |binary wrGraph-1.3.12/wrGraph/inst/doc/wrGraphVignette1.R | 8 wrGraph-1.3.12/wrGraph/inst/doc/wrGraphVignette1.Rmd | 14 wrGraph-1.3.12/wrGraph/inst/doc/wrGraphVignette1.html | 149 +++---- wrGraph-1.3.12/wrGraph/man/MAplotW.Rd | 10 wrGraph-1.3.12/wrGraph/vignettes/wrGraphVignette1.Rmd | 14 17 files changed, 453 insertions(+), 518 deletions(-)
Title: Pin, Discover, and Share Resources
Description: Publish data sets, models, and other R objects, making it
easy to share them across projects and with your colleagues. You can
pin objects to a variety of "boards", including local folders (to
share on a networked drive or with 'DropBox'), 'Posit Connect',
'AWS S3', and more.
Author: Julia Silge [cre, aut] ,
Hadley Wickham [aut] ,
Javier Luraschi [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Julia Silge <julia.silge@posit.co>
Diff between pins versions 1.4.1 dated 2025-04-29 and 1.4.2 dated 2026-03-09
pins-1.4.1/pins/tests/testthat/_snaps/board_gdrive.md |only pins-1.4.1/pins/tests/testthat/_snaps/board_ms365.md |only pins-1.4.1/pins/tests/testthat/_snaps/legacy_packages.md |only pins-1.4.1/pins/tests/testthat/_snaps/legacy_registry.md |only pins-1.4.1/pins/tests/testthat/test-legacy_packages.R |only pins-1.4.1/pins/tests/testthat/test-legacy_registry.R |only pins-1.4.1/pins/tests/testthat/test-pin_find.R |only pins-1.4.1/pins/tools |only pins-1.4.2/pins/DESCRIPTION | 22 - pins-1.4.2/pins/MD5 | 266 ++++++------- pins-1.4.2/pins/NAMESPACE | 3 pins-1.4.2/pins/NEWS.md | 16 pins-1.4.2/pins/R/board.R | 13 pins-1.4.2/pins/R/board_azure.R | 64 ++- pins-1.4.2/pins/R/board_connect.R | 216 ++++------ pins-1.4.2/pins/R/board_connect_bundle.R | 72 +++ pins-1.4.2/pins/R/board_connect_server.R | 22 - pins-1.4.2/pins/R/board_connect_url.R | 42 -- pins-1.4.2/pins/R/board_databricks.R | 50 +- pins-1.4.2/pins/R/board_folder.R | 22 - pins-1.4.2/pins/R/board_gcs.R | 74 ++- pins-1.4.2/pins/R/board_gdrive.R | 39 + pins-1.4.2/pins/R/board_kaggle.R | 144 ++++--- pins-1.4.2/pins/R/board_ms365.R | 33 + pins-1.4.2/pins/R/board_s3.R | 90 ++-- pins-1.4.2/pins/R/board_url.R | 113 +++-- pins-1.4.2/pins/R/cache.R | 4 pins-1.4.2/pins/R/legacy_azure.R | 14 pins-1.4.2/pins/R/legacy_board.R | 1 pins-1.4.2/pins/R/legacy_board_registry.R | 32 - pins-1.4.2/pins/R/legacy_datatxt.R | 44 +- pins-1.4.2/pins/R/legacy_dospaces.R | 17 pins-1.4.2/pins/R/legacy_gcloud.R | 22 - pins-1.4.2/pins/R/legacy_github.R | 65 ++- pins-1.4.2/pins/R/legacy_kaggle.R | 75 ++- pins-1.4.2/pins/R/legacy_local.R | 6 pins-1.4.2/pins/R/legacy_packages.R | 5 pins-1.4.2/pins/R/legacy_pin_download.R | 149 +++++-- pins-1.4.2/pins/R/legacy_pin_manifest.R | 24 - pins-1.4.2/pins/R/legacy_pin_registry.R | 6 pins-1.4.2/pins/R/legacy_s3.R | 20 pins-1.4.2/pins/R/legacy_test.R | 41 +- pins-1.4.2/pins/R/meta.R | 35 - pins-1.4.2/pins/R/pin-delete.R | 12 pins-1.4.2/pins/R/pin-meta.R | 49 +- pins-1.4.2/pins/R/pin-read-write.R | 149 ++++--- pins-1.4.2/pins/R/pin-store-fetch.R | 10 pins-1.4.2/pins/R/pin-upload-download.R | 36 + pins-1.4.2/pins/R/pin.R | 28 - pins-1.4.2/pins/R/pin_browse.R | 8 pins-1.4.2/pins/R/pin_find.R | 7 pins-1.4.2/pins/R/pin_get.R | 9 pins-1.4.2/pins/R/pin_info.R | 29 - pins-1.4.2/pins/R/pin_list.R | 8 pins-1.4.2/pins/R/pin_reactive.R | 2 pins-1.4.2/pins/R/pin_remove.R | 12 pins-1.4.2/pins/R/pin_search.R | 12 pins-1.4.2/pins/R/pin_versions.R | 49 +- pins-1.4.2/pins/R/pins-package.R | 2 pins-1.4.2/pins/R/reexports.R | 5 pins-1.4.2/pins/R/testthat.R | 35 - pins-1.4.2/pins/R/utils.R | 24 - pins-1.4.2/pins/R/versions.R | 25 - pins-1.4.2/pins/README.md | 12 pins-1.4.2/pins/build/vignette.rds |binary pins-1.4.2/pins/inst/doc/customize-pins-metadata.R | 6 pins-1.4.2/pins/inst/doc/customize-pins-metadata.Rmd | 6 pins-1.4.2/pins/inst/doc/customize-pins-metadata.html | 12 pins-1.4.2/pins/inst/doc/managing-custom-formats.R | 6 pins-1.4.2/pins/inst/doc/managing-custom-formats.Rmd | 6 pins-1.4.2/pins/inst/doc/managing-custom-formats.html | 10 pins-1.4.2/pins/inst/doc/pins-update.R | 14 pins-1.4.2/pins/inst/doc/pins-update.Rmd | 14 pins-1.4.2/pins/inst/doc/pins-update.html | 14 pins-1.4.2/pins/inst/doc/pins.R | 42 +- pins-1.4.2/pins/inst/doc/pins.Rmd | 44 +- pins-1.4.2/pins/inst/doc/pins.html | 129 +++--- pins-1.4.2/pins/inst/doc/posit-connect.R | 14 pins-1.4.2/pins/inst/doc/posit-connect.Rmd | 16 pins-1.4.2/pins/inst/doc/posit-connect.html | 26 - pins-1.4.2/pins/inst/doc/using-board-url.R | 18 pins-1.4.2/pins/inst/doc/using-board-url.Rmd | 18 pins-1.4.2/pins/inst/doc/using-board-url.html | 34 - pins-1.4.2/pins/man/board_azure.Rd | 8 pins-1.4.2/pins/man/board_connect.Rd | 10 pins-1.4.2/pins/man/board_connect_url.Rd | 4 pins-1.4.2/pins/man/board_databricks.Rd | 4 pins-1.4.2/pins/man/board_gcs.Rd | 6 pins-1.4.2/pins/man/board_gdrive.Rd | 4 pins-1.4.2/pins/man/board_kaggle.Rd | 14 pins-1.4.2/pins/man/board_ms365.Rd | 2 pins-1.4.2/pins/man/board_register.Rd | 13 pins-1.4.2/pins/man/board_s3.Rd | 6 pins-1.4.2/pins/man/board_url.Rd | 16 pins-1.4.2/pins/man/legacy_datatxt.Rd | 12 pins-1.4.2/pins/man/legacy_local.Rd | 4 pins-1.4.2/pins/man/pin.Rd | 13 pins-1.4.2/pins/man/pin_browse.Rd | 8 pins-1.4.2/pins/man/pin_delete.Rd | 12 pins-1.4.2/pins/man/pin_download.Rd | 4 pins-1.4.2/pins/man/pin_fetch.Rd | 4 pins-1.4.2/pins/man/pin_find.Rd | 6 pins-1.4.2/pins/man/pin_get.Rd | 10 pins-1.4.2/pins/man/pin_info.Rd | 13 pins-1.4.2/pins/man/pin_list.Rd | 8 pins-1.4.2/pins/man/pin_meta.Rd | 12 pins-1.4.2/pins/man/pin_read.Rd | 35 + pins-1.4.2/pins/man/pin_remove.Rd | 13 pins-1.4.2/pins/man/pin_search.Rd | 12 pins-1.4.2/pins/man/pin_versions.Rd | 16 pins-1.4.2/pins/man/reexports.Rd | 3 pins-1.4.2/pins/man/write_board_manifest.Rd | 2 pins-1.4.2/pins/tests/testthat/_snaps/board_connect_url.md | 8 pins-1.4.2/pins/tests/testthat/_snaps/board_folder.md | 4 pins-1.4.2/pins/tests/testthat/_snaps/board_url.md | 24 - pins-1.4.2/pins/tests/testthat/_snaps/pin-read-write.md | 33 + pins-1.4.2/pins/tests/testthat/_snaps/pin_info.md | 53 +- pins-1.4.2/pins/tests/testthat/_snaps/pin_versions.md | 11 pins-1.4.2/pins/tests/testthat/test-board_connect.R | 42 -- pins-1.4.2/pins/tests/testthat/test-board_connect_bundle.R | 7 pins-1.4.2/pins/tests/testthat/test-board_connect_server.R | 16 pins-1.4.2/pins/tests/testthat/test-board_connect_url.R | 18 pins-1.4.2/pins/tests/testthat/test-board_folder.R | 16 pins-1.4.2/pins/tests/testthat/test-board_s3.R | 1 pins-1.4.2/pins/tests/testthat/test-board_url.R | 97 ++-- pins-1.4.2/pins/tests/testthat/test-pin-delete.R | 8 pins-1.4.2/pins/tests/testthat/test-pin-read-write.R | 41 +- pins-1.4.2/pins/tests/testthat/test-pin_info.R | 4 pins-1.4.2/pins/tests/testthat/test-pin_search.R | 18 pins-1.4.2/pins/tests/testthat/test-pin_versions.R | 4 pins-1.4.2/pins/tests/testthat/test-utils.R | 41 ++ pins-1.4.2/pins/vignettes/connect-automate.txt | 10 pins-1.4.2/pins/vignettes/customize-pins-metadata.Rmd | 6 pins-1.4.2/pins/vignettes/managing-custom-formats.Rmd | 6 pins-1.4.2/pins/vignettes/pins-update.Rmd | 14 pins-1.4.2/pins/vignettes/pins.Rmd | 44 +- pins-1.4.2/pins/vignettes/posit-connect.Rmd | 16 pins-1.4.2/pins/vignettes/using-board-url.Rmd | 18 138 files changed, 2111 insertions(+), 1536 deletions(-)
Title: Exact Distributions for Rank and Permutation Tests
Description: Computes exact conditional p-values and quantiles using an
implementation of the Shift-Algorithm by Streitberg & Roehmel.
Author: Torsten Hothorn [aut, cre],
Kurt Hornik [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between exactRankTests versions 0.8-35 dated 2022-04-26 and 0.8-36 dated 2026-03-09
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- data/ASAT.rda |binary data/bloodp.rda |binary data/ears.rda |binary data/glioma.rda |binary data/globulin.rda |binary data/lungcancer.rda |binary data/neuropathy.rda |binary data/ocarcinoma.rda |binary data/rotarod.rda |binary data/sal.rda |binary inst/NEWS | 4 ++++ tests/reg-tests.R | 4 ++-- tests/reg-tests.Rout.save | 16 ++++++++-------- 15 files changed, 32 insertions(+), 28 deletions(-)
More information about exactRankTests at CRAN
Permanent link
Title: Estimation of Pleiotropic Heritability from Genome-Wide
Association Studies (GWAS) Summary Statistics
Description: Provides tools to compute unbiased pleiotropic heritability estimates of complex diseases from genome-wide association studies (GWAS) summary statistics. We estimate pleiotropic heritability from GWAS summary statistics by estimating the proportion of variance explained from an estimated genetic correlation matrix (Bulik-Sullivan et al. 2015 <doi:10.1038/ng.3406>) and employing a Monte-Carlo bias correction procedure to account for sampling noise in genetic correlation estimates.
Author: Yujie Zhao [aut, cre]
Maintainer: Yujie Zhao <yujiezhao@hsph.harvard.edu>
Diff between pleioh2g versions 0.1.1 dated 2026-02-19 and 0.1.2 dated 2026-03-09
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/pruning_pleioh2g_wrapper.R | 13 ++++++------- 3 files changed, 11 insertions(+), 12 deletions(-)
Title: Statistical Hypothesis Testing Using the Delta Method
Description: Statistical hypothesis testing using the Delta method as
proposed by Deng et al. (2018) <doi:10.1145/3219819.3219919>. This
method replaces the standard variance estimation formula in the Z-test
with an approximate formula derived via the Delta method, which can
account for within-user correlation.
Author: Koji Makiyama [aut, cre, cph],
Kazuyuki Sano [ctb, wdc],
Shinichi Takayanagi [med],
Daisuke Ichikawa [exp],
LY Corporation Analytics Solution Enhancement Team [spn]
Maintainer: Koji Makiyama <hoxo.smile@gmail.com>
Diff between deltatest versions 0.1.0 dated 2025-03-03 and 0.2.0 dated 2026-03-09
DESCRIPTION | 23 +++-- MD5 | 24 ++--- NAMESPACE | 30 +++--- NEWS.md | 8 + R/deltatest.R | 8 + R/generate_dummy_data.R | 12 +- R/tidy.R |only README.md | 89 ++++++++++++++++---- build/partial.rdb |binary man/figures/README-p-values-from-delta-method-1.png |binary man/figures/README-p-values-from-z-test-1.png |binary man/generate_dummy_data.Rd | 4 tests/testthat/test-deltatest.R | 4 tests/testthat/test-tidy.R |only 14 files changed, 147 insertions(+), 55 deletions(-)
Title: Accessing and Validating Marine Environmental Data from 'SHARK'
and Related Databases
Description: Provides functions to retrieve, process, analyze, and
quality-control marine physical, chemical, and biological data. The
main focus is on Swedish monitoring data available through the 'SHARK'
database <https://shark.smhi.se/en/>, with additional API support for 'Nordic
Microalgae' <https://nordicmicroalgae.org/>, 'Dyntaxa'
<https://artfakta.se/>, World Register of Marine Species ('WoRMS') <https://www.marinespecies.org>,
'AlgaeBase' <https://www.algaebase.org>, OBIS 'xylookup' web service
<https://iobis.github.io/xylookup/> and Intergovernmental Oceanographic Commission (IOC) -
UNESCO databases on harmful algae <https://www.marinespecies.org/hab/> and toxins
<https://toxins.hais.ioc-unesco.org/>.
Author: Markus Lindh [aut] ,
Anders Torstensson [aut, cre] ,
Mikael Hedblom [ctb] ,
Bengt Karlson [ctb] ,
SHARK [cph],
SBDI [fnd]
Maintainer: Anders Torstensson <anders.torstensson@smhi.se>
Diff between SHARK4R versions 1.0.3 dated 2026-01-14 and 1.1.0 dated 2026-03-09
DESCRIPTION | 6 MD5 | 187 ++++++------ NAMESPACE | 3 NEWS.md | 35 ++ R/algaebase_api_functions.R | 62 ++-- R/check_codes.R | 10 R/check_depth.R | 6 R/check_fields.R | 4 R/check_logical.R | 9 R/check_onland.R | 28 + R/check_stations.R | 8 R/dyntaxa_api_functions.R | 15 - R/hab_api_functions.R | 38 +- R/iRfcb_functions.R | 8 R/ifcb_is_near_land.R | 4 R/nua_api_functions.R | 382 +++++++++++++++++++++++++- R/plankton_toolbox.R | 16 - R/read_delivery_template.R | 26 - R/shark_api_functions.R | 58 ++- R/shark_read.R | 10 R/util.R | 89 +++--- R/worms_api_functions.R | 72 ++-- R/xylookup.R | 6 R/zzz.R | 7 README.md | 2 inst/CITATION | 4 inst/WORDLIST | 7 inst/doc/quality_control.R | 49 ++- inst/doc/quality_control.Rmd | 96 +++--- inst/doc/quality_control.html | 71 +--- inst/doc/retrieve_hab_data.R | 17 - inst/doc/retrieve_hab_data.Rmd | 20 + inst/doc/retrieve_hab_data.html | 57 +-- inst/doc/retrieve_nordic_microalgae_data.R | 45 ++- inst/doc/retrieve_nordic_microalgae_data.Rmd | 63 +++- inst/doc/retrieve_nordic_microalgae_data.html | 182 +++++++++--- inst/doc/retrieve_shark_data.R | 16 - inst/doc/retrieve_shark_data.Rmd | 17 - inst/doc/retrieve_shark_data.html | 17 - inst/doc/retrieve_worms_data.R | 43 +- inst/doc/retrieve_worms_data.Rmd | 54 ++- inst/doc/retrieve_worms_data.html | 108 +++---- man/add_worms_taxonomy.Rd | 6 man/assign_phytoplankton_group.Rd | 18 - man/check_depth.Rd | 6 man/check_fields.Rd | 4 man/check_onland.Rd | 12 man/check_setup.Rd | 6 man/check_station_distance.Rd | 6 man/clean_shark4r_cache.Rd | 16 - man/find_required_fields.Rd | 6 man/get_delivery_template.Rd | 18 - man/get_hab_list.Rd | 28 - man/get_nomp_list.Rd | 8 man/get_nua_external_links.Rd | 8 man/get_nua_harmfulness.Rd | 6 man/get_nua_image_labeling_links.Rd |only man/get_nua_image_labeling_metadata.Rd |only man/get_nua_media_links.Rd | 4 man/get_nua_media_metadata.Rd |only man/get_nua_taxa.Rd | 4 man/get_peg_list.Rd | 4 man/get_shark_codes.Rd | 6 man/get_shark_data.Rd | 6 man/get_shark_datasets.Rd | 12 man/get_shark_options.Rd | 8 man/get_shark_statistics.Rd | 10 man/get_shark_table_counts.Rd | 6 man/get_toxin_list.Rd | 8 man/get_worms_classification.Rd | 16 - man/get_worms_records.Rd | 4 man/get_worms_records_name.Rd | 4 man/get_worms_taxonomy_tree.Rd | 10 man/ifcb_is_near_land.Rd | 4 man/load_shark4r_fields.Rd | 6 man/load_shark4r_stats.Rd | 8 man/lookup_xy.Rd | 6 man/match_worms_taxa.Rd | 10 man/nominal_station.Rd | 2 man/positions_are_near_land.Rd | 4 man/update_worms_taxonomy.Rd | 4 tests/testthat/test-check_codes.R | 4 tests/testthat/test-check_depth.R | 7 tests/testthat/test-check_logical.R | 23 + tests/testthat/test-check_onland.R | 7 tests/testthat/test-dyntaxa_api_functions.R | 15 + tests/testthat/test-nua_api_functions.R | 41 ++ tests/testthat/test-shark_api_functions.R | 2 tests/testthat/test-shark_read.R | 2 tests/testthat/test-worms_api_functions.R | 6 tests/testthat/test-xylookup.R | 16 - vignettes/quality_control.Rmd | 96 +++--- vignettes/retrieve_hab_data.Rmd | 20 + vignettes/retrieve_nordic_microalgae_data.Rmd | 63 +++- vignettes/retrieve_shark_data.Rmd | 17 - vignettes/retrieve_worms_data.Rmd | 54 ++- 96 files changed, 1737 insertions(+), 887 deletions(-)
Title: A Collection of Proteome Panels and Metadata
Description: It aggregates protein panel data and metadata for protein quantitative
trait locus (pQTL) analysis using 'pQTLtools' (<https://jinghuazhao.github.io/pQTLtools/>).
The package includes data from affinity-based panels such as 'Olink' (<https://olink.com/>)
and 'SomaScan' (<https://somalogic.com/>), as well as mass spectrometry-based panels from
'CellCarta' (<https://cellcarta.com/>), 'Seer' (<https://seer.bio/>) and 'SWATH-MS'
(<doi:10.15252/msb.20178126>). The metadata encompasses updated annotations
and publication details.
Author: Jing Hua Zhao [aut, cre] ,
Uwe Ligges [ctb],
Benjamin Altmann [ctb],
Brian Ripley [ctb]
Maintainer: Jing Hua Zhao <jinghuazhao@hotmail.com>
Diff between pQTLdata versions 0.5 dated 2025-03-07 and 0.6 dated 2026-03-09
DESCRIPTION | 30 +++++++++++-------- MD5 | 63 ++++++++++++++++++++-------------------- NEWS.md | 12 +++++++ R/inf1.R | 2 - R/pQTLdata.R | 6 ++- R/swath_ms.R | 8 ++++- README.md | 20 ++++++++---- build/partial.rdb |binary build/vignette.rds |binary data/Olink_Explore_1536.rda |binary data/Olink_Explore_3072.rda |binary data/Olink_Explore_HT.rda |binary data/Olink_Target_96.rda |binary data/Olink_qPCR.rda |binary data/SomaScan11k.rda |binary data/SomaScan160410.rda |binary data/SomaScanV4.1.rda |binary data/caprion.rda |binary data/inf1.rda |binary data/scallop_inf1.rda |binary data/seer1980.rda |binary data/swath_ms.rda |binary inst/README.md | 2 - inst/REFERENCES.bib | 67 +++++++++++++++++++++++++------------------ inst/doc/pQTLdata.R | 16 +++++++--- inst/doc/pQTLdata.Rmd | 20 +++++++++--- inst/doc/pQTLdata.html | 68 ++++++++++++++++++++++++++++++++++++++++---- inst/scripts/cran.sh | 2 - man/figures |only man/inf1.Rd | 2 - man/pQTLdata.Rd | 14 ++++++--- man/swath_ms.Rd | 8 ++++- vignettes/pQTLdata.Rmd | 20 +++++++++--- 33 files changed, 247 insertions(+), 113 deletions(-)
Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals
for general linear hypotheses in parametric models, including
linear, generalized linear, linear mixed effects, and survival models.
The package includes demos reproducing analyzes presented
in the book "Multiple Comparisons Using R" (Bretz, Hothorn,
Westfall, 2010, CRC Press).
Author: Torsten Hothorn [aut, cre] ,
Frank Bretz [aut],
Peter Westfall [aut],
Richard M. Heiberger [ctb],
Andre Schuetzenmeister [ctb],
Susan Scheibe [ctb],
Christian Ritz [ctb],
Christian B. Pipper [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between multcomp versions 1.4-29 dated 2025-10-20 and 1.4-30 dated 2026-03-09
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Title: Genome Polarization via Diagnostic Index Expectation
Maximization
Description: Implements a likelihood-based method for genome polarization, identifying
which alleles of SNV markers belong to either side of a barrier to gene flow. The
approach co-estimates individual assignment, barrier strength, and divergence between
sides, with direct application to studies of hybridization. Includes VCF-to-diem
conversion and input checks, support for mixed ploidy and parallelization, and tools
for visualization and diagnostic outputs. Based on diagnostic index expectation
maximization as described in Baird et al. (2023) <doi:10.1111/2041-210X.14010>.
Author: Natalia Martinkova [aut, cre] ,
Stuart Baird [aut]
Maintainer: Natalia Martinkova <martinkova@ivb.cz>
Diff between diemr versions 1.5.3 dated 2026-01-13 and 1.5.4 dated 2026-03-09
DESCRIPTION | 6 MD5 | 16 +- NEWS.md | 7 R/vcf2diem.r | 76 ++-------- inst/doc/Importing-data-for-genome-polarisation.html | 4 inst/doc/Understanding-genome-polarisation-output-files.html | 4 inst/doc/diemr-diagnostic-index-expecation-maximisation-in-r.html | 10 - man/vcf2diem.Rd | 10 - tests/testthat/test_rank2map.r | 8 - 9 files changed, 53 insertions(+), 88 deletions(-)
Title: Extra Geometries and Stats for 'ggplot2'
Description: A collection of layers for 'ggplot2'.
Author: Markus Doering [aut, cre, cph]
Maintainer: Markus Doering <m4rkus.doering@gmail.com>
Diff between ggpointless versions 0.1.0 dated 2024-02-08 and 0.2.0 dated 2026-03-09
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Title: Stabilising Variable Selection
Description: A stable approach to variable selection through stability selection and the use of a permutation-based objective stability threshold. Lima et al (2021) <doi:10.1038/s41598-020-79317-8>, Meinshausen and Buhlmann (2010) <doi:10.1111/j.1467-9868.2010.00740.x>.
Author: Robert Hyde [aut, cre] ,
Eliana Lima [aut],
Matthew Barden [aut],
Kate Lewis [aut],
Martin Green [aut]
Maintainer: Robert Hyde <robert.hyde4@nottingham.ac.uk>
Diff between stabiliser versions 1.0.6 dated 2023-05-17 and 1.0.7 dated 2026-03-09
DESCRIPTION | 40 +++- MD5 | 34 ++-- NAMESPACE | 118 +++++++------- NEWS.md | 4 R/boot_model.R | 116 ++++++------- R/perm_stab.R | 101 +++++++----- R/permute.R | 102 ++++++------ R/simulate_data_glmer_re.R |only R/stabilise.R | 119 +++++++------- R/stabilise_re.R | 8 R/stabilise_re_glmer.R |only R/stabiliser.R | 3 R/triangulate.R | 126 +++++++-------- build/vignette.rds |binary inst/doc/stabiliser.R | 2 inst/doc/stabiliser.html | 349 ++++++++++++++++-------------------------- man/simulate_data_re_glmer.Rd |only man/stabilise_re.Rd | 2 man/stabilise_re_glmer.Rd |only man/stabiliser.Rd | 38 ++-- 20 files changed, 563 insertions(+), 599 deletions(-)
Title: A Modular Two-Step Convex Optimization Estimator for Ill-Posed
Problems
Description: Convex Least Squares Programming (CLSP) is a two-step estimator
for solving underdetermined, ill-posed, or structurally constrained
least-squares problems. It combines pseudoinverse-based estimation with
convex-programming correction methods inspired by Lasso, Ridge, and
Elastic Net to ensure numerical stability, constraint enforcement, and
interpretability. The package also provides numerical stability analysis
and CLSP-specific diagnostics, including partial R^2, normalized RMSE
(NRMSE), Monte Carlo t-tests for mean NRMSE, and condition-number-based
confidence bands.
Author: Ilya Bolotov [aut, cre]
Maintainer: Ilya Bolotov <ilya.bolotov@vse.cz>
Diff between rclsp versions 0.4.0 dated 2026-02-19 and 0.5.0 dated 2026-03-09
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 5 +++++ R/clsp.R | 22 +++++++++++++--------- 4 files changed, 25 insertions(+), 16 deletions(-)
Title: Make Symmetric and Asymmetric ARDL Estimations
Description: Implements estimation procedures for Autoregressive Distributed Lag (ARDL)
and Nonlinear ARDL (NARDL) models, which allow researchers to investigate both
short- and long-run relationships in time series data under mixed orders of integration.
The package supports simultaneous modeling of symmetric and asymmetric regressors,
flexible treatment of short-run and long-run asymmetries, and automated equation handling.
It includes several cointegration testing approaches such as the Pesaran-Shin-Smith F
and t bounds tests, and the restricted ECM test.
Methodological foundations are provided in Pesaran, Shin, and Smith (2001)
<doi:10.1016/S0304-4076(01)00049-5> and Shin, Yu, and Greenwood-Nimmo (2014, ISBN:9780123855079).
Author: Huseyin Karamelikli [aut, cre] ,
Huseyin Utku Demir [aut]
Maintainer: Huseyin Karamelikli <hakperest@gmail.com>
Diff between kardl versions 0.1.1 dated 2025-10-09 and 1.1.0 dated 2026-03-09
kardl-0.1.1/kardl/R/makeEquation.R |only kardl-0.1.1/kardl/R/makeModel.R |only kardl-0.1.1/kardl/inst/template |only kardl-0.1.1/kardl/man/archtest.Rd |only kardl-0.1.1/kardl/man/asymmetrytest.Rd |only kardl-0.1.1/kardl/man/banerjee.Rd |only kardl-0.1.1/kardl/man/parseFormula.Rd |only kardl-0.1.1/kardl/man/recmt.Rd |only kardl-0.1.1/kardl/man/replaceValues.Rd |only kardl-0.1.1/kardl/man/writemath.Rd |only kardl-1.1.0/kardl/DESCRIPTION | 18 kardl-1.1.0/kardl/MD5 | 83 - kardl-1.1.0/kardl/NAMESPACE | 39 kardl-1.1.0/kardl/NEWS.md |only kardl-1.1.0/kardl/R/data.R | 6 kardl-1.1.0/kardl/R/kardl.R | 1206 ++++++++++++++++-- kardl-1.1.0/kardl/R/longrun.R | 199 +-- kardl-1.1.0/kardl/R/miscellaneous.R | 337 +---- kardl-1.1.0/kardl/R/multipliers.R |only kardl-1.1.0/kardl/R/prepare.R | 489 +++---- kardl-1.1.0/kardl/R/print.R | 393 +++--- kardl-1.1.0/kardl/R/settings.R | 56 kardl-1.1.0/kardl/R/tests.R | 1823 ++++++++++------------------ kardl-1.1.0/kardl/README.md | 214 ++- kardl-1.1.0/kardl/build/vignette.rds |binary kardl-1.1.0/kardl/inst/doc/intro.R | 95 - kardl-1.1.0/kardl/inst/doc/intro.Rmd | 181 +- kardl-1.1.0/kardl/inst/doc/intro.html | 791 +++++++----- kardl-1.1.0/kardl/man/bootstrap.Rd |only kardl-1.1.0/kardl/man/ecm.Rd |only kardl-1.1.0/kardl/man/imf_example_data.Rd | 4 kardl-1.1.0/kardl/man/kardl.Rd | 263 ++-- kardl-1.1.0/kardl/man/kardl_get.Rd | 17 kardl-1.1.0/kardl/man/kardl_longrun.Rd | 47 kardl-1.1.0/kardl/man/kardl_reset.Rd | 11 kardl-1.1.0/kardl/man/kardl_set.Rd | 25 kardl-1.1.0/kardl/man/lmerge.Rd | 10 kardl-1.1.0/kardl/man/modelCriterion.Rd | 61 kardl-1.1.0/kardl/man/mplier.Rd |only kardl-1.1.0/kardl/man/narayan.Rd | 72 - kardl-1.1.0/kardl/man/parse_formula_vars.Rd |only kardl-1.1.0/kardl/man/pssf.Rd | 74 - kardl-1.1.0/kardl/man/psst.Rd | 74 - kardl-1.1.0/kardl/man/symmetrytest.Rd |only kardl-1.1.0/kardl/tests |only kardl-1.1.0/kardl/vignettes/intro.Rmd | 181 +- 46 files changed, 3741 insertions(+), 3028 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') Driver Manager
Description: Provides a developer-facing interface to 'Arrow' Database
Connectivity ('ADBC') for the purposes of driver development, driver
testing, and building high-level database interfaces for users. 'ADBC'
<https://arrow.apache.org/adbc/> is an API standard for database access
libraries that uses 'Arrow' for result sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcdrivermanager versions 0.22.0 dated 2026-01-21 and 0.22.0-1 dated 2026-03-09
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/Makevars | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
More information about adbcdrivermanager at CRAN
Permanent link
Title: Knowledge Space Theory
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework, which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kst' package provides
basic functionalities to generate, handle, and manipulate knowledge
structures and knowledge spaces.
Author: Christina Stahl [aut],
David Meyer [aut],
Cord Hockemeyer [aut, cre]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kst versions 0.5-4 dated 2022-10-24 and 0.5-5 dated 2026-03-09
Changelog | 4 DESCRIPTION | 8 MD5 | 23 - R/as.binaryMatrix.R | 1 R/kspace.R | 66 +-- build/vignette.rds |binary inst/doc/kst.R | 376 ++++++++++---------- inst/doc/kst.Rnw | 833 +++++++++++++++++++++++----------------------- inst/doc/kst.pdf |binary man/as.binaryMatrix.Rd | 58 +-- man/space_property.Rd | 104 ++--- vignettes/kst-classes.jpg |only vignettes/kst.Rnw | 833 +++++++++++++++++++++++----------------------- 13 files changed, 1157 insertions(+), 1149 deletions(-)
Title: Custom Inputs Widgets for Shiny
Description: Collection of custom input controls and user interface components for 'Shiny' applications.
Give your applications a unique and colorful style !
Author: Victor Perrier [aut, cre, cph],
Fanny Meyer [aut],
David Granjon [aut],
Ian Fellows [ctb] ,
Wil Davis [ctb] ,
Spencer Matthews [ctb] ,
JavaScript and CSS libraries authors [ctb, cph]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between shinyWidgets versions 0.9.0 dated 2025-02-21 and 0.9.1 dated 2026-03-09
DESCRIPTION | 8 ++--- MD5 | 46 ++++++++++++++++-------------- NAMESPACE | 2 + NEWS.md | 9 +++++ R/quercus-input.R |only R/slim-select.R | 11 +++++-- inst/examples/slim-select/basic/app.R | 24 +++++++-------- inst/packer/WinBox.js | 2 - inst/packer/air-datepicker.js | 2 - inst/packer/autonumeric.js | 2 - inst/packer/buttons-group.js | 2 - inst/packer/calendar-pro.js | 2 - inst/packer/calendar-pro.js.LICENSE.txt | 2 - inst/packer/colorpickr.js | 2 - inst/packer/input-icons.js | 2 - inst/packer/input-time.js | 2 - inst/packer/multi.js | 2 - inst/packer/nouislider.js | 2 - inst/packer/quercus.js |only inst/packer/slim-select.js | 2 - inst/packer/tree.js | 2 - inst/packer/virtual-select.js | 2 - inst/packer/virtual-select.js.LICENSE.txt | 2 - man/quercusInput.Rd |only man/slimSelectInput.Rd | 24 +++++++-------- man/updateQuercusInput.Rd |only 26 files changed, 86 insertions(+), 68 deletions(-)
Title: Rcpp Machine Learning Library
Description: Fast machine learning algorithms including matrix factorization
and divisive clustering for large sparse and dense matrices.
Author: Zachary DeBruine [aut, cre]
Maintainer: Zachary DeBruine <zacharydebruine@gmail.com>
Diff between RcppML versions 0.3.7 dated 2021-09-21 and 0.3.7.1 dated 2026-03-09
DESCRIPTION | 9 MD5 | 12 build/vignette.rds |binary inst/doc/RcppML.R | 110 +++--- inst/doc/RcppML.html | 898 ++++++++++++++++++++++++++------------------------- src/Makevars | 1 src/Makevars.win | 2 7 files changed, 538 insertions(+), 494 deletions(-)
Title: Fair Models in Machine Learning
Description: Fair machine learning regression models which take sensitive attributes into account in
model estimation. Currently implementing Komiyama et al. (2018)
<http://proceedings.mlr.press/v80/komiyama18a/komiyama18a.pdf>, Zafar et al.
(2019) <https://www.jmlr.org/papers/volume20/18-262/18-262.pdf> and my own
approach from Scutari, Panero and Proissl (2022)
<doi:10.1007/s11222-022-10143-w> that uses ridge regression to enforce fairness.
Author: Marco Scutari [aut, cre]
Maintainer: Marco Scutari <scutari@bnlearn.com>
Diff between fairml versions 0.9 dated 2025-04-29 and 0.9.1 dated 2026-03-09
Changelog | 4 ++++ DESCRIPTION |only LICENSE |only MD5 | 10 +++++----- NAMESPACE |only R/zlm.R | 22 +++++++++++----------- R/zlrm.R | 22 +++++++++++----------- data/adult.rda |only data/bank.rda |only data/health.retirement.rda |binary data/law.school.admissions.rda |only man |only 12 files changed, 31 insertions(+), 27 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-30 0.5.2
2022-03-25 0.5.0
2021-10-28 0.4.1
2021-07-14 0.2.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-06 1.1
2021-11-03 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-01-24 1.0.4
2022-03-29 1.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-03-27 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-24 1.0.2
2021-02-05 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-11 0.2.2
2023-01-13 0.2.1
2023-01-12 0.2.0
2020-04-02 0.1.1
2020-03-21 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-08-25 1.0.5
2015-08-22 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-06-06 0.1.1
2025-06-04 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-10-29 0.3.6
2025-07-28 0.3.5
Title: Noncompartmental Analysis for Pharmacokinetic Data
Description: Conduct a noncompartmental analysis with industrial strength.
Some features are
1) Use of CDISC SDTM terms
2) Automatic or manual slope selection
3) Supporting both 'linear-up linear-down' and 'linear-up log-down' method
4) Interval(partial) AUCs with 'linear' or 'log' interpolation method
* Reference: Gabrielsson J, Weiner D. Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications. 5th ed. 2016. (ISBN:9198299107).
Author: Kyun-Seop Bae [aut, cre]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between NonCompart versions 0.7.0 dated 2023-11-15 and 0.7.1 dated 2026-03-09
NonCompart-0.7.0/NonCompart/inst/doc/NCA-formula.pdf |only NonCompart-0.7.0/NonCompart/inst/doc/NonCompart-manual.pdf |only NonCompart-0.7.1/NonCompart/DESCRIPTION | 14 + NonCompart-0.7.1/NonCompart/MD5 | 31 +-- NonCompart-0.7.1/NonCompart/R/AUC.R | 20 +- NonCompart-0.7.1/NonCompart/R/BestSlope.R | 113 +++++-------- NonCompart-0.7.1/NonCompart/R/DetSlope.R | 2 NonCompart-0.7.1/NonCompart/R/IntAUC.R | 13 - NonCompart-0.7.1/NonCompart/R/Slope.R | 5 NonCompart-0.7.1/NonCompart/R/Unit.R | 59 ++++-- NonCompart-0.7.1/NonCompart/R/UnitUrine.R | 12 - NonCompart-0.7.1/NonCompart/R/sNCA.R | 24 +- NonCompart-0.7.1/NonCompart/R/tblAUC.R | 11 - NonCompart-0.7.1/NonCompart/R/tblNCA.R | 11 - NonCompart-0.7.1/NonCompart/inst/NEWS.Rd | 16 + NonCompart-0.7.1/NonCompart/inst/doc/NCA-Formula.pdf |only NonCompart-0.7.1/NonCompart/man/Interpol.Rd | 2 NonCompart-0.7.1/NonCompart/man/gInterpol.Rd | 2 18 files changed, 174 insertions(+), 161 deletions(-)
Title: Nanosecond-Resolution Time Support for R
Description: Full 64-bit resolution date and time functionality with
nanosecond granularity is provided, with easy transition to and from
the standard 'POSIXct' type. Three additional classes offer interval,
period and duration functionality for nanosecond-resolution timestamps.
Author: Dirk Eddelbuettel [aut, cre] ,
Leonardo Silvestri [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between nanotime versions 0.3.12 dated 2025-04-02 and 0.3.13 dated 2026-03-09
nanotime-0.3.12/nanotime/inst/doc/nanotime-introduction.Rnw |only nanotime-0.3.12/nanotime/inst/doc/nanotime-introduction.pdf |only nanotime-0.3.12/nanotime/src/Makevars |only nanotime-0.3.12/nanotime/src/Makevars.win |only nanotime-0.3.12/nanotime/vignettes/nanotime-intro.pdf |only nanotime-0.3.12/nanotime/vignettes/nanotime-introduction.Rnw |only nanotime-0.3.13/nanotime/ChangeLog | 45 +++ nanotime-0.3.13/nanotime/DESCRIPTION | 15 - nanotime-0.3.13/nanotime/MD5 | 31 +- nanotime-0.3.13/nanotime/NAMESPACE | 11 nanotime-0.3.13/nanotime/README.md | 2 nanotime-0.3.13/nanotime/build/vignette.rds |binary nanotime-0.3.13/nanotime/cleanup | 2 nanotime-0.3.13/nanotime/configure |only nanotime-0.3.13/nanotime/configure.win |only nanotime-0.3.13/nanotime/inst/CITATION |only nanotime-0.3.13/nanotime/inst/NEWS.Rd | 25 + nanotime-0.3.13/nanotime/inst/doc/nanotime-intro.pdf |only nanotime-0.3.13/nanotime/inst/doc/nanotime-intro.pdf.asis |only nanotime-0.3.13/nanotime/inst/include/nanotime/globals.hpp | 153 +++++------ nanotime-0.3.13/nanotime/src/Makevars.in |only nanotime-0.3.13/nanotime/src/Makevars.win.in |only nanotime-0.3.13/nanotime/tools |only nanotime-0.3.13/nanotime/vignettes/nanotime-intro.pdf.asis |only 24 files changed, 175 insertions(+), 109 deletions(-)
Title: Imputation Estimator from Borusyak, Jaravel, and Spiess (2021)
Description: Estimates Two-way Fixed Effects difference-in-differences/event-study models using the imputation-based approach proposed by Borusyak, Jaravel, and Spiess (2021).
Author: Kyle Butts [aut, cre]
Maintainer: Kyle Butts <buttskyle96@gmail.com>
Diff between didimputation versions 0.5.0 dated 2025-12-17 and 0.5.1 dated 2026-03-09
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/did_imputation.R | 13 ------------- man/did_imputation.Rd | 19 +------------------ tests/testthat/test-did_imputation.R | 17 ----------------- 5 files changed, 8 insertions(+), 55 deletions(-)