Title: Weighted and Directed Networks
Description: Assortativity coefficients, centrality measures,
and clustering coefficients for weighted and directed networks.
Rewiring unweighted networks with given assortativity coefficients.
Generating general preferential attachment networks.
Author: Yelie Yuan [aut, cre],
Tiandong Wang [aut],
Jun Yan [aut],
Panpan Zhang [aut]
Maintainer: Yelie Yuan <yelie.yuan@gmail.com>
Diff between wdnet versions 1.2.3 dated 2024-03-03 and 1.2.4 dated 2026-03-10
DESCRIPTION | 19 +- MD5 | 57 +++--- NAMESPACE | 7 NEWS.md | 10 + R/RcppExports.R | 4 R/assortativity.R | 8 R/centrality.R | 2 R/cls_rpacontrol.R | 2 R/cls_wdnet.R | 10 - R/clustercoef.R | 2 R/compile_pref.R | 2 R/joint_dist.R | 322 ++++++++++++++++++------------------ R/rewire.R | 9 - R/rpa_control.R | 2 R/rpanet.R | 2 R/rpanet_internal.R | 2 R/utils.R | 2 R/wdnet-package.R | 4 man/assortcoef.Rd | 4 man/collect_solver_results.Rd |only man/cvxr_control.Rd | 13 - man/dprewire.Rd | 5 man/dprewire.range.Rd | 2 man/dw_feature_assort.Rd | 2 man/get_eta_directed.Rd | 2 man/get_eta_undirected.Rd | 2 man/get_values.Rd | 4 man/wdnet-package.Rd | 4 tests/testthat/test-assortativity.R | 4 tests/testthat/test-rewire.R | 37 ++++ 30 files changed, 301 insertions(+), 244 deletions(-)
Title: Penalized Transformation Models
Description: Partially penalized versions of specific transformation models
implemented in package 'mlt'. Available models include a fully parametric version
of the Cox model, other parametric survival models (Weibull, etc.), models for
binary and ordered categorical variables, normal and transformed-normal (Box-Cox type)
linear models, and continuous outcome logistic regression. Hyperparameter tuning
is facilitated through model-based optimization functionalities from package 'mlrMBO'.
The accompanying vignette describes the methodology used in 'tramnet' in detail.
Transformation models and model-based optimization are described in
Hothorn et al. (2019) <doi:10.1111/sjos.12291> and
Bischl et al. (2016) <doi:10.48550/arXiv.1703.03373>, respectively.
Author: Lucas Kook [cre, aut],
Balint Tamasi [ctb],
Sandra Siegfried [ctb],
Samuel Pawel [ctb],
Torsten Hothorn [ctb]
Maintainer: Lucas Kook <lucasheinrich.kook@gmail.com>
Diff between tramnet versions 0.0-99 dated 2026-03-06 and 0.0-991 dated 2026-03-10
DESCRIPTION | 6 +++--- MD5 | 5 +++-- R/zzz.R |only inst/doc/tramnet.pdf |binary 4 files changed, 6 insertions(+), 5 deletions(-)
Title: Patient Subgroup Identification for Clinical Drug Development
Description: Implementation of Sequential BATTing (bootstrapping and aggregating of thresholds from trees) for developing threshold-based multivariate (prognostic/predictive) biomarker signatures. Variable selection is automatically built-in. Final signatures are returned with interaction plots for predictive signatures. Cross-validation performance evaluation and testing dataset results are also output. Detail algorithms are described in Huang et al (2017) <doi:10.1002/sim.7236>.
Author: Xin Huang [aut, cre, cph],
Yan Sun [aut],
Saptarshi Chatterjee [aut],
Paul Trow [aut]
Maintainer: Xin Huang <xin.huang@abbvie.com>
Diff between SubgrpID versions 0.13 dated 2026-03-07 and 0.14 dated 2026-03-10
DESCRIPTION | 9 +++++---- MD5 | 2 +- 2 files changed, 6 insertions(+), 5 deletions(-)
Title: Dr. Small's Functions
Description: Collection of utility functions supporting statistical modeling,
regression analysis, and network analysis workflows used in data
science research. Includes tools for model selection, matrix
operations, graph analysis, and related statistical computations.
Author: Ellie Small [aut, cre]
Maintainer: Ellie Small <ellie_small@yahoo.com>
This is a re-admission after prior archival of version 1.0.5 dated 2025-05-16
Diff between smallstuff versions 1.0.5 dated 2025-05-16 and 1.0.6 dated 2026-03-10
DESCRIPTION | 21 ++++++++++++--------- MD5 | 5 +++-- NEWS |only R/CVerror.R | 2 +- 4 files changed, 16 insertions(+), 12 deletions(-)
Title: Time Series Analysis Tools
Description: A system contains easy-to-use tools as a support for time series analysis courses. In particular, it incorporates a technique called Generalized Method of Wavelet Moments (GMWM) as well as its robust implementation for fast and robust parameter estimation of time series models which is described, for example, in Guerrier et al. (2013) <doi: 10.1080/01621459.2013.799920>. More details can also be found in the paper linked to via the URL below.
Author: Stephane Guerrier [aut, cre, cph],
James Balamuta [aut, cph],
Roberto Molinari [aut, cph],
Justin Lee [aut],
Lionel Voirol [aut],
Yuming Zhang [aut],
Wenchao Yang [ctb],
Nathanael Claussen [ctb],
Yunxiang Zhang [ctb],
Christian Gunning [cph],
Romain [...truncated...]
Maintainer: Stephane Guerrier <stef.guerrier@gmail.com>
Diff between simts versions 0.2.3 dated 2025-10-08 and 0.2.4 dated 2026-03-10
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 3 ++- NEWS.md | 4 ++++ R/model_selection.R | 27 +++++++++++++++++++++------ build/partial.rdb |binary build/vignette.rds |binary inst/doc/vignettes.html | 48 ++++++++++++++++++++---------------------------- 8 files changed, 58 insertions(+), 46 deletions(-)
Title: Statistical Disclosure Control Methods for Anonymization of Data
and Risk Estimation
Description: Data from statistical agencies and other institutions are mostly
confidential. This package, introduced in Templ, Kowarik and Meindl (2017) <doi:10.18637/jss.v067.i04>, can be used for the generation of anonymized
(micro)data, i.e. for the creation of public- and scientific-use files.
The theoretical basis for the methods implemented can be found in Templ (2017) <doi:10.1007/978-3-319-50272-4>.
Various risk estimation and anonymization methods are included. Note that the package
includes a graphical user interface published in Meindl and Templ (2019) <doi:10.3390/a12090191> that allows to use various methods of this
package.
Author: Matthias Templ [aut, cre] ,
Bernhard Meindl [aut],
Alexander Kowarik [aut] ,
Johannes Gussenbauer [aut],
Organisation For Economic Co-Operation And Development [cph] code code for rank swapping,
mdav-microaggregation, suda2 and other risk
measures [...truncated...]
Maintainer: Matthias Templ <matthias.templ@gmail.com>
Diff between sdcMicro versions 5.8.0 dated 2026-01-09 and 5.8.1 dated 2026-03-10
sdcMicro-5.8.0/sdcMicro/R/KI_applyAnonymization.R |only sdcMicro-5.8.0/sdcMicro/R/KI_createSdcObj.R |only sdcMicro-5.8.0/sdcMicro/R/ki_access_utilities.R |only sdcMicro-5.8.0/sdcMicro/R/ki_anonymization_utilities.R |only sdcMicro-5.8.0/sdcMicro/man/KI_applyAnonymization.Rd |only sdcMicro-5.8.0/sdcMicro/man/KI_createSdcObj.Rd |only sdcMicro-5.8.0/sdcMicro/man/patch_groupAndRename_age.Rd |only sdcMicro-5.8.1/sdcMicro/DESCRIPTION | 14 - sdcMicro-5.8.1/sdcMicro/MD5 | 81 +++--- sdcMicro-5.8.1/sdcMicro/NAMESPACE | 4 sdcMicro-5.8.1/sdcMicro/NEWS | 20 + sdcMicro-5.8.1/sdcMicro/R/AI_applyAnonymization.R |only sdcMicro-5.8.1/sdcMicro/R/AI_createSdcObj.R |only sdcMicro-5.8.1/sdcMicro/R/ai_access_utilities.R |only sdcMicro-5.8.1/sdcMicro/R/ai_anonymization_utilities.R |only sdcMicro-5.8.1/sdcMicro/build/vignette.rds |binary sdcMicro-5.8.1/sdcMicro/data/CASCrefmicrodata.rda |binary sdcMicro-5.8.1/sdcMicro/data/EIA.rda |binary sdcMicro-5.8.1/sdcMicro/data/Tarragona.rda |binary sdcMicro-5.8.1/sdcMicro/data/casc1.rda |binary sdcMicro-5.8.1/sdcMicro/data/francdat.rda |binary sdcMicro-5.8.1/sdcMicro/data/free1.rda |binary sdcMicro-5.8.1/sdcMicro/data/microData.rda |binary sdcMicro-5.8.1/sdcMicro/data/testdata.RData |binary sdcMicro-5.8.1/sdcMicro/data/testdata2.RData |binary sdcMicro-5.8.1/sdcMicro/inst/doc/ai_assisted_anonymization.R |only sdcMicro-5.8.1/sdcMicro/inst/doc/ai_assisted_anonymization.Rmd |only sdcMicro-5.8.1/sdcMicro/inst/doc/ai_assisted_anonymization.html |only sdcMicro-5.8.1/sdcMicro/inst/doc/sdcMicro.html | 4 sdcMicro-5.8.1/sdcMicro/inst/shiny/sdcApp/controllers/ui_ai_panel.R |only sdcMicro-5.8.1/sdcMicro/inst/shiny/sdcApp/controllers/ui_anonymize.R | 12 sdcMicro-5.8.1/sdcMicro/inst/shiny/sdcApp/controllers/ui_setup_sdc.R | 128 +++++++++- sdcMicro-5.8.1/sdcMicro/inst/shiny/sdcApp/global.R | 73 +++++ sdcMicro-5.8.1/sdcMicro/inst/shiny/sdcApp/ui.R | 31 ++ sdcMicro-5.8.1/sdcMicro/man/AI_applyAnonymization.Rd |only sdcMicro-5.8.1/sdcMicro/man/AI_createSdcObj.Rd |only sdcMicro-5.8.1/sdcMicro/man/ai_utility_score.Rd |only sdcMicro-5.8.1/sdcMicro/man/build_agentic_prompt.Rd |only sdcMicro-5.8.1/sdcMicro/man/build_anonymization_prompt.Rd | 43 --- sdcMicro-5.8.1/sdcMicro/man/build_llm_prompt.Rd | 2 sdcMicro-5.8.1/sdcMicro/man/build_refinement_prompt.Rd |only sdcMicro-5.8.1/sdcMicro/man/clean_llm_code.Rd | 3 sdcMicro-5.8.1/sdcMicro/man/execute_tool_calls.Rd |only sdcMicro-5.8.1/sdcMicro/man/extract_variable_metadata.Rd | 2 sdcMicro-5.8.1/sdcMicro/man/get_tool_schemas.Rd |only sdcMicro-5.8.1/sdcMicro/man/query_llm.Rd |only sdcMicro-5.8.1/sdcMicro/man/query_llm_for_roles.Rd | 26 +- sdcMicro-5.8.1/sdcMicro/man/read_codebook_snippet.Rd | 7 sdcMicro-5.8.1/sdcMicro/src/0Main.cpp | 6 sdcMicro-5.8.1/sdcMicro/src/Framework.h | 28 +- sdcMicro-5.8.1/sdcMicro/src/Mdav.h | 6 sdcMicro-5.8.1/sdcMicro/tests/testthat/test_ai_tools.R |only sdcMicro-5.8.1/sdcMicro/tests/testthat/test_ai_utility.R |only sdcMicro-5.8.1/sdcMicro/vignettes/ai_assisted.bib |only sdcMicro-5.8.1/sdcMicro/vignettes/ai_assisted_anonymization.Rmd |only 55 files changed, 366 insertions(+), 124 deletions(-)
Title: External jars for 'rjdverse' R Packages
Description: It provides external jars required for the 'rjdverse' (as 'rjd3toolkit', 'rjd3x13' and 'rjd3tramoseats').
Author: Tanguy Barthelemy [aut, cre]
Maintainer: Tanguy Barthelemy <tanguy.barthelemy@insee.fr>
Diff between rjd3jars versions 0.0.2 dated 2026-03-05 and 0.0.3 dated 2026-03-10
rjd3jars-0.0.2/rjd3jars/inst/java/protobuf-java-4.33.1.jar |only rjd3jars-0.0.3/rjd3jars/DESCRIPTION | 7 ++++--- rjd3jars-0.0.3/rjd3jars/MD5 | 6 +++--- rjd3jars-0.0.3/rjd3jars/NEWS.md | 13 ++++++++++++- rjd3jars-0.0.3/rjd3jars/inst/java/protobuf-java-4.34.0.jar |only 5 files changed, 19 insertions(+), 7 deletions(-)
Title: R SDK and Exporters for OpenTelemetry
Description: OpenTelemetry is a collection of tools,
APIs, and SDKs used to instrument, generate, collect, and export
telemetry data (metrics, logs, and traces) for analysis in order to
understand your software's performance and behavior.
This package contains the OpenTelemetry SDK, and exporters.
Use this package to export traces, metrics, logs from instrumented
R code. Use the otel package to instrument your R code for
OpenTelemetry.
Author: Gabor Csardi [aut, cre],
Posit Software, PBC [cph, fnd] ,
opentelemetry-cpp authors [ctb]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between otelsdk versions 0.2.2 dated 2025-10-07 and 0.2.3 dated 2026-03-10
.aspell |only DESCRIPTION | 18 +++---- MD5 | 20 ++++---- NEWS.md | 6 ++ R/docs.R | 3 - configure | 12 +++-- inst/WORDLIST | 6 ++ man/environmentvariables.Rd | 3 - man/otelsdk-package.Rd | 4 - src/Makevars.in | 9 ++- src/vendor/opentelemetry-cpp.patch | 85 +++++++++++++++++++++++++++++++++++++ tests/testthat/_snaps/current.md | 2 12 files changed, 138 insertions(+), 30 deletions(-)
Title: Static Library and Headers for 'OpenEXR' Image I/O
Description: Provides the 'OpenEXR' static library and 'C++' headers
for high-dynamic-range image I/O (see <https://openexr.com/>)
needed to link R packages against the 'OpenEXR' library, along
with a basic R interface to load 'EXR' images.
Author: Tyler Morgan-Wall [aut, cre] ,
Aaron Demolder [ctb, cph],
Abe Fettig [ctb, cph],
Aloys Baillet [ctb, cph],
Andre Mazzone [ctb, cph],
Andrew Kunz [ctb, cph],
Anton Dukhovnikov [ctb, cph],
Antonio Rojas [ctb, cph],
Aras Pranckevicius [ctb, cph],
Arkady [...truncated...]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between libopenexr versions 3.4.4-1 dated 2026-03-09 and 3.4.4-2 dated 2026-03-10
DESCRIPTION | 6 ++-- MD5 | 26 +++++++++++++------- inst/include/openjph |only src/Makevars.in | 8 +++--- src/Makevars.win.in | 6 +++- src/OpenEXR/external/deflate/lib/x86/adler32_impl.h | 4 +-- src/OpenEXR/external/deflate/lib/x86/cpu_features.h | 9 ------ src/OpenEXR/external/deflate/lib/x86/crc32_impl.h | 4 +-- src/OpenEXR/src/lib/OpenEXR/ImfStdIO.cpp | 14 ---------- tools/config/configure.R | 4 --- 10 files changed, 34 insertions(+), 47 deletions(-)
Title: Scalable and Flexible Derivation of Custom-Time Bioclimatic and
Environmental Summary Variables
Description: Provides an efficient tool for creating custom-time bioclimatic and derived environmental
summary variables from user-supplied raster data for user-defined timeframes. The package overcomes
computational bottlenecks by automatically switching between an in-memory framework using the 'terra'
package to maximize speed for smaller datasets, and an on-disk tiling framework for rasters that exceed
available RAM, leveraging 'exactextractr' and 'Rfast' to process data in chunks. The core functions,
derive_bioclim() and derive_statistics(), offer a unified interface with flexibility for custom time
periods beyond standard quarters and the use of fixed temporal indices, facilitating the creation of
temporally-matched environmental variables for ecological and biogeographical modeling. Visit
the package website <https://gepinillab.github.io/fastbioclim/> to find tutorials in English and Spanish.
Author: Gonzalo E. Pinilla-Buitrago [aut, cre] ,
Luis Osorio-Olvera [aut]
Maintainer: Gonzalo E. Pinilla-Buitrago <gepinillab@gmail.com>
Diff between fastbioclim versions 0.3.0 dated 2025-11-26 and 0.4.1 dated 2026-03-10
fastbioclim-0.3.0/fastbioclim/R/average_fast.R |only fastbioclim-0.3.0/fastbioclim/R/average_terra.R |only fastbioclim-0.3.0/fastbioclim/man/average_fast.Rd |only fastbioclim-0.3.0/fastbioclim/man/average_terra.Rd |only fastbioclim-0.4.1/fastbioclim/DESCRIPTION | 24 fastbioclim-0.4.1/fastbioclim/MD5 | 200 +-- fastbioclim-0.4.1/fastbioclim/NAMESPACE | 1 fastbioclim-0.4.1/fastbioclim/NEWS.md | 19 fastbioclim-0.4.1/fastbioclim/R/aggregate_fast.R |only fastbioclim-0.4.1/fastbioclim/R/aggregate_terra.R |only fastbioclim-0.4.1/fastbioclim/R/bioclim_fast.R | 4 fastbioclim-0.4.1/fastbioclim/R/bios_fast.R | 553 ++++++---- fastbioclim-0.4.1/fastbioclim/R/bios_terra.R | 327 +++-- fastbioclim-0.4.1/fastbioclim/R/calculate_average.R | 41 fastbioclim-0.4.1/fastbioclim/R/calculate_roll.R | 45 fastbioclim-0.4.1/fastbioclim/R/calculate_sum.R |only fastbioclim-0.4.1/fastbioclim/R/derive_bioclim.R | 114 +- fastbioclim-0.4.1/fastbioclim/R/derive_statistics.R | 67 + fastbioclim-0.4.1/fastbioclim/R/helper_functions.R | 48 fastbioclim-0.4.1/fastbioclim/R/stats_fast.R | 50 fastbioclim-0.4.1/fastbioclim/R/stats_terra.R | 36 fastbioclim-0.4.1/fastbioclim/README.md | 43 fastbioclim-0.4.1/fastbioclim/inst |only fastbioclim-0.4.1/fastbioclim/man/aggregate_fast.Rd |only fastbioclim-0.4.1/fastbioclim/man/aggregate_terra.Rd |only fastbioclim-0.4.1/fastbioclim/man/bio01_fast.Rd | 13 fastbioclim-0.4.1/fastbioclim/man/bio01_terra.Rd | 8 fastbioclim-0.4.1/fastbioclim/man/bio02_fast.Rd | 13 fastbioclim-0.4.1/fastbioclim/man/bio02_terra.Rd | 10 fastbioclim-0.4.1/fastbioclim/man/bio03_fast.Rd | 13 fastbioclim-0.4.1/fastbioclim/man/bio03_terra.Rd | 8 fastbioclim-0.4.1/fastbioclim/man/bio04_fast.Rd | 10 fastbioclim-0.4.1/fastbioclim/man/bio04_terra.Rd | 6 fastbioclim-0.4.1/fastbioclim/man/bio05_fast.Rd | 36 fastbioclim-0.4.1/fastbioclim/man/bio05_terra.Rd | 29 fastbioclim-0.4.1/fastbioclim/man/bio06_fast.Rd | 36 fastbioclim-0.4.1/fastbioclim/man/bio06_terra.Rd | 28 fastbioclim-0.4.1/fastbioclim/man/bio07_fast.Rd | 15 fastbioclim-0.4.1/fastbioclim/man/bio07_terra.Rd | 10 fastbioclim-0.4.1/fastbioclim/man/bio08_fast.Rd | 15 fastbioclim-0.4.1/fastbioclim/man/bio08_terra.Rd | 8 fastbioclim-0.4.1/fastbioclim/man/bio09_fast.Rd | 15 fastbioclim-0.4.1/fastbioclim/man/bio09_terra.Rd | 8 fastbioclim-0.4.1/fastbioclim/man/bio10_fast.Rd | 15 fastbioclim-0.4.1/fastbioclim/man/bio10_terra.Rd | 8 fastbioclim-0.4.1/fastbioclim/man/bio11_fast.Rd | 15 fastbioclim-0.4.1/fastbioclim/man/bio11_terra.Rd | 8 fastbioclim-0.4.1/fastbioclim/man/bio12_fast.Rd | 10 fastbioclim-0.4.1/fastbioclim/man/bio12_terra.Rd | 6 fastbioclim-0.4.1/fastbioclim/man/bio13_fast.Rd | 17 fastbioclim-0.4.1/fastbioclim/man/bio13_terra.Rd | 8 fastbioclim-0.4.1/fastbioclim/man/bio14_fast.Rd | 17 fastbioclim-0.4.1/fastbioclim/man/bio14_terra.Rd | 8 fastbioclim-0.4.1/fastbioclim/man/bio15_fast.Rd | 18 fastbioclim-0.4.1/fastbioclim/man/bio15_terra.Rd | 8 fastbioclim-0.4.1/fastbioclim/man/bio16_fast.Rd | 13 fastbioclim-0.4.1/fastbioclim/man/bio16_terra.Rd | 8 fastbioclim-0.4.1/fastbioclim/man/bio17_fast.Rd | 13 fastbioclim-0.4.1/fastbioclim/man/bio17_terra.Rd | 8 fastbioclim-0.4.1/fastbioclim/man/bio18_fast.Rd | 13 fastbioclim-0.4.1/fastbioclim/man/bio18_terra.Rd | 8 fastbioclim-0.4.1/fastbioclim/man/bio19_fast.Rd | 13 fastbioclim-0.4.1/fastbioclim/man/bio19_terra.Rd | 8 fastbioclim-0.4.1/fastbioclim/man/bio20_fast.Rd | 13 fastbioclim-0.4.1/fastbioclim/man/bio20_terra.Rd | 8 fastbioclim-0.4.1/fastbioclim/man/bio21_fast.Rd | 19 fastbioclim-0.4.1/fastbioclim/man/bio21_terra.Rd | 10 fastbioclim-0.4.1/fastbioclim/man/bio22_fast.Rd | 19 fastbioclim-0.4.1/fastbioclim/man/bio22_terra.Rd | 10 fastbioclim-0.4.1/fastbioclim/man/bio23_fast.Rd | 16 fastbioclim-0.4.1/fastbioclim/man/bio23_terra.Rd | 8 fastbioclim-0.4.1/fastbioclim/man/bio24_fast.Rd | 15 fastbioclim-0.4.1/fastbioclim/man/bio24_terra.Rd | 10 fastbioclim-0.4.1/fastbioclim/man/bio25_fast.Rd | 15 fastbioclim-0.4.1/fastbioclim/man/bio25_terra.Rd | 10 fastbioclim-0.4.1/fastbioclim/man/bio26_fast.Rd | 15 fastbioclim-0.4.1/fastbioclim/man/bio26_terra.Rd | 10 fastbioclim-0.4.1/fastbioclim/man/bio27_fast.Rd | 15 fastbioclim-0.4.1/fastbioclim/man/bio27_terra.Rd | 10 fastbioclim-0.4.1/fastbioclim/man/bio28_fast.Rd | 13 fastbioclim-0.4.1/fastbioclim/man/bio28_terra.Rd | 8 fastbioclim-0.4.1/fastbioclim/man/bio29_fast.Rd | 17 fastbioclim-0.4.1/fastbioclim/man/bio29_terra.Rd | 8 fastbioclim-0.4.1/fastbioclim/man/bio30_fast.Rd | 17 fastbioclim-0.4.1/fastbioclim/man/bio30_terra.Rd | 8 fastbioclim-0.4.1/fastbioclim/man/bio31_fast.Rd | 14 fastbioclim-0.4.1/fastbioclim/man/bio31_terra.Rd | 8 fastbioclim-0.4.1/fastbioclim/man/bio32_fast.Rd | 15 fastbioclim-0.4.1/fastbioclim/man/bio32_terra.Rd | 10 fastbioclim-0.4.1/fastbioclim/man/bio33_fast.Rd | 15 fastbioclim-0.4.1/fastbioclim/man/bio33_terra.Rd | 10 fastbioclim-0.4.1/fastbioclim/man/bio34_fast.Rd | 15 fastbioclim-0.4.1/fastbioclim/man/bio34_terra.Rd | 10 fastbioclim-0.4.1/fastbioclim/man/bio35_fast.Rd | 15 fastbioclim-0.4.1/fastbioclim/man/bio35_terra.Rd | 10 fastbioclim-0.4.1/fastbioclim/man/bioclim_fast.Rd | 4 fastbioclim-0.4.1/fastbioclim/man/calculate_average.Rd | 38 fastbioclim-0.4.1/fastbioclim/man/calculate_roll.Rd | 46 fastbioclim-0.4.1/fastbioclim/man/calculate_sum.Rd |only fastbioclim-0.4.1/fastbioclim/man/derive_bioclim.Rd | 79 - fastbioclim-0.4.1/fastbioclim/man/derive_statistics.Rd | 60 - fastbioclim-0.4.1/fastbioclim/man/figures |only fastbioclim-0.4.1/fastbioclim/man/get_window.Rd | 26 fastbioclim-0.4.1/fastbioclim/man/stats_fast.Rd | 4 fastbioclim-0.4.1/fastbioclim/man/stats_terra.Rd | 4 fastbioclim-0.4.1/fastbioclim/tests/testthat/test-calculate_average.R | 34 fastbioclim-0.4.1/fastbioclim/tests/testthat/test-derive_statistics.R | 10 107 files changed, 1799 insertions(+), 977 deletions(-)
Title: VCG Sampling using Energy-Based Covariate Balancing
Description: Provides a principled framework for sampling Virtual Control Group (VCG) using energy distance-based covariate balancing. The package offers visualization tools to assess covariate balance and includes a permutation test to evaluate the statistical significance of observed deviations.
Author: Andreas Schulz [aut, cre] ,
Sanofi [cph, fnd]
Maintainer: Andreas Schulz <andreas.schulz2@sanofi.com>
Diff between eVCGsampler versions 0.9.5 dated 2026-02-13 and 1.0.0 dated 2026-03-10
DESCRIPTION | 8 - MD5 | 21 +- NAMESPACE | 1 R/VCG_sampler.R | 2 R/energy_test.R | 252 +++++++++++++++++------------------ R/launchApp.R |only inst/app |only inst/doc/eVCGsampler_user_guide.R | 7 inst/doc/eVCGsampler_user_guide.Rmd | 11 + inst/doc/eVCGsampler_user_guide.html | 21 +- man/launchApp.Rd |only vignettes/eVCGsampler_user_guide.Rmd | 11 + 12 files changed, 188 insertions(+), 146 deletions(-)
Title: Evaluation Platform in Chronic Obstructive Pulmonary Disease
Description: Evaluation Platform in Chronic Obstructive Pulmonary Disease (EPIC) is a Discrete Event Simulation (DES) model that simulates health outcomes of patients with Chronic Obstructive Pulmonary Disease (COPD) based on demographics and individual-level risk factors, based on the model published in Sadatsafavi et al. (2019) <doi:10.1177/0272989X18824098>.
Author: Mohsen Sadatsafavi [aut, cph],
Amin Adibi [aut, cre],
Kate Johnson [aut]
Maintainer: Amin Adibi <adibi@alumni.ubc.ca>
Diff between epicR versions 0.9.0 dated 2026-03-08 and 1.0.0 dated 2026-03-10
DESCRIPTION | 8 MD5 | 28 NEWS.md | 36 R/epicR.R | 4 R/validation.R | 12 README.md | 1 inst/doc/AddingNewCountry.Rmd | 5 inst/doc/AddingNewCountry.html | 2040 +++++------------------ inst/doc/InputsOutputsStructure.Rmd | 3 inst/doc/InputsOutputsStructure.html | 3104 +++++++++++------------------------ src/Makevars | 2 src/Makevars.win | 2 src/epic_model.h | 2 vignettes/AddingNewCountry.Rmd | 5 vignettes/InputsOutputsStructure.Rmd | 3 15 files changed, 1517 insertions(+), 3738 deletions(-)
Title: Fast Embedding Guided by Self-Organizing Map
Description: Provides a smooth mapping of multidimensional points into
low-dimensional space defined by a self-organizing map. Designed to work
with 'FlowSOM' and flow-cytometry use-cases. See Kratochvil et al. (2019)
<doi:10.12688/f1000research.21642.1>.
Author: Mirek Kratochvil [aut, cre],
Sofie Van Gassen [cph],
Britt Callebaut [cph],
Yvan Saeys [cph],
Ron Wehrens [cph]
Maintainer: Mirek Kratochvil <exa.exa@gmail.com>
This is a re-admission after prior archival of version 2.2 dated 2025-01-31
Diff between EmbedSOM versions 2.2 dated 2025-01-31 and 2.2.1 dated 2026-03-10
DESCRIPTION | 8 +-- MD5 | 10 ++-- build/vignette.rds |binary inst/doc/UsingEmbedSOM.R | 24 +++++------ inst/doc/UsingEmbedSOM.html | 90 +++++++++++++++++++------------------------- src/som.cpp | 4 - 6 files changed, 60 insertions(+), 76 deletions(-)
Title: Bayesian Inference for Causal Networks
Description: An approximate Bayesian method for inferring Directed Acyclic Graphs
(DAGs) for continuous, discrete, and mixed data. The algorithm can use the
graph inferred by another more efficient graph inference method as input;
the input graph may contain false edges or undirected edges but can help
reduce the search space to a more manageable size. A Metropolis-Hastings-like
sampling algorithm is then used to infer the posterior probabilities of
edge direction and edge absence.
References:
Martin, Patchigolla and Fu (2026) <doi:10.48550/arXiv.1909.10678>.
Author: Evan A Martin [aut],
Venkata Patchigolla [ctb],
Audrey Fu [aut, cre]
Maintainer: Audrey Fu <audreyqyfu@gmail.com>
This is a re-admission after prior archival of version 1.2.0 dated 2020-07-31
Diff between baycn versions 1.2.0 dated 2020-07-31 and 2.0.0 dated 2026-03-10
baycn-1.2.0/baycn/R/mhEdge.R |only baycn-1.2.0/baycn/tests/testthat/testCycleFinder.R |only baycn-1.2.0/baycn/tests/testthat/testCycleRemover.R |only baycn-2.0.0/baycn/DESCRIPTION | 38 baycn-2.0.0/baycn/MD5 | 22 baycn-2.0.0/baycn/NAMESPACE | 6 baycn-2.0.0/baycn/R/MHEdge.R |only baycn-2.0.0/baycn/R/coordinates.R | 32 baycn-2.0.0/baycn/R/cycles.R | 1631 +++----------------- baycn-2.0.0/baycn/R/likelihood.R | 14 baycn-2.0.0/baycn/R/simdata.R | 14 baycn-2.0.0/baycn/man/coordinates.Rd |only baycn-2.0.0/baycn/man/mhEdge.Rd | 13 baycn-2.0.0/baycn/man/simdata.Rd | 14 baycn-2.0.0/baycn/tests/testthat/testMakeAcyclic.R |only 15 files changed, 356 insertions(+), 1428 deletions(-)
Title: Asian Option Pricing under Price Impact
Description: Implements the framework of Tiwari and Majumdar (2025)
<doi:10.48550/arXiv.2512.07154> for valuing arithmetic and geometric
Asian options under transient and permanent market impact. Provides
three pricing approaches: Kemna-Vorst frictionless benchmarks,
exogenous diffusion pricing (closed-form for geometric, Monte Carlo
for arithmetic), and endogenous Hamilton-Jacobi-Bellman valuation
via a tree-based Bellman scheme producing indifference bid-ask prices.
Author: Priyanshu Tiwari [aut, cre] ,
Sourav Majumdar [ctb]
Maintainer: Priyanshu Tiwari <tiwari.priyanshu.iitk@gmail.com>
Diff between AsianOption versions 0.1.0 dated 2025-12-22 and 0.2.0 dated 2026-03-10
DESCRIPTION | 25 +- MD5 | 39 +++- NAMESPACE | 9 + R/RcppExports.R | 36 ++++ R/arithmetic_asian_diffusion.R |only R/geometric_asian_diffusion.R |only R/hjb_bellman.R |only R/transient_impact.R |only R/validation.R | 180 ++++++++++++++++++++ inst/WORDLIST | 3 man/arithmetic_asian_bounds_transient.Rd |only man/integrate_trapezoid.Rd |only man/price_arithmetic_asian_diffusion.Rd |only man/price_arithmetic_asian_hjb.Rd |only man/price_geometric_asian_diffusion.Rd |only man/price_geometric_asian_hjb.Rd |only man/price_geometric_asian_transient.Rd |only man/print.hjb_asian.Rd |only man/validate_hjb_inputs.Rd |only man/validate_transient_inputs.Rd |only src/RcppExports.cpp | 255 +++++++++++++++++++++++++++++ src/arithmetic_asian_diffusion_mc.cpp |only src/arithmetic_bounds_transient.cpp |only src/geometric_asian_transient.cpp |only src/hjb_bellman.cpp |only src/hjb_bellman.h |only src/utils.cpp | 105 +++++++++++ src/utils.h | 43 ++++ tests/testthat/test-arithmetic-diffusion.R |only tests/testthat/test-geometric-diffusion.R |only tests/testthat/test-hjb-bellman.R |only tests/testthat/test-transient-impact.R |only 32 files changed, 674 insertions(+), 21 deletions(-)
Title: Simulate Data from a (Time-Dependent) Causal DAG
Description: Simulate complex data from a given directed acyclic graph and information about each individual node.
Root nodes are simply sampled from the specified distribution. Child Nodes are simulated according to
one of many implemented regressions, such as logistic regression, linear
regression, poisson regression or any other function. Also includes a comprehensive framework for discrete-time
simulation, discrete-event simulation, and networks-based simulation which can generate even more complex longitudinal and dependent data.
For more details, see Robin Denz, Nina Timmesfeld (2025) <doi:10.48550/arXiv.2506.01498>.
Author: Robin Denz [aut, cre],
Katharina Meiszl [aut]
Maintainer: Robin Denz <robin.denz@rub.de>
Diff between simDAG versions 0.5.0 dated 2026-01-08 and 0.5.1 dated 2026-03-10
simDAG-0.5.0/simDAG/man/figures/example_dag.png |only simDAG-0.5.0/simDAG/man/sim_from_dag.Rd |only simDAG-0.5.1/simDAG/DESCRIPTION | 8 simDAG-0.5.1/simDAG/MD5 | 71 ++-- simDAG-0.5.1/simDAG/NAMESPACE | 1 simDAG-0.5.1/simDAG/NEWS.md | 13 simDAG-0.5.1/simDAG/R/distributions.r | 3 simDAG-0.5.1/simDAG/R/input_checks.r | 30 + simDAG-0.5.1/simDAG/R/node_polr.r |only simDAG-0.5.1/simDAG/R/node_rsurv.r | 50 ++ simDAG-0.5.1/simDAG/R/sim_discrete_event.r | 169 +++++----- simDAG-0.5.1/simDAG/build/vignette.rds |binary simDAG-0.5.1/simDAG/inst/doc/simDAG.html | 150 ++++---- simDAG-0.5.1/simDAG/inst/doc/v_cookbook.html | 33 + simDAG-0.5.1/simDAG/inst/doc/v_covid_example.html | 2 simDAG-0.5.1/simDAG/inst/doc/v_sim_discrete_event.R | 16 simDAG-0.5.1/simDAG/inst/doc/v_sim_discrete_event.Rmd | 27 - simDAG-0.5.1/simDAG/inst/doc/v_sim_discrete_event.html | 47 -- simDAG-0.5.1/simDAG/inst/doc/v_sim_discrete_time.html | 2 simDAG-0.5.1/simDAG/inst/doc/v_sim_from_dag.Rmd | 1 simDAG-0.5.1/simDAG/inst/doc/v_sim_from_dag.html | 35 +- simDAG-0.5.1/simDAG/inst/doc/v_sim_networks.Rmd | 2 simDAG-0.5.1/simDAG/inst/doc/v_sim_networks.html | 24 - simDAG-0.5.1/simDAG/man/figures/Thumbs.db |only simDAG-0.5.1/simDAG/man/figures/example_DAG.png |only simDAG-0.5.1/simDAG/man/node.Rd | 1 simDAG-0.5.1/simDAG/man/node_next_time.Rd | 2 simDAG-0.5.1/simDAG/man/node_polr.Rd |only simDAG-0.5.1/simDAG/man/node_rsurv.Rd | 16 simDAG-0.5.1/simDAG/man/sim_discrete_event.Rd | 17 - simDAG-0.5.1/simDAG/man/sim_from_DAG.Rd |only simDAG-0.5.1/simDAG/tests/testthat/test_network.r | 2 simDAG-0.5.1/simDAG/tests/testthat/test_node_lmer.r | 22 - simDAG-0.5.1/simDAG/tests/testthat/test_node_polr.r |only simDAG-0.5.1/simDAG/tests/testthat/test_node_rsurv.r | 28 + simDAG-0.5.1/simDAG/tests/testthat/test_rtexp.r | 7 simDAG-0.5.1/simDAG/tests/testthat/test_sim_discrete_event.r | 96 +++-- simDAG-0.5.1/simDAG/vignettes/images_v_joss/disc_time_sim.bib.sav.tmp |only simDAG-0.5.1/simDAG/vignettes/v_sim_discrete_event.Rmd | 27 - simDAG-0.5.1/simDAG/vignettes/v_sim_from_dag.Rmd | 1 simDAG-0.5.1/simDAG/vignettes/v_sim_networks.Rmd | 2 41 files changed, 481 insertions(+), 424 deletions(-)
Title: Statistical Functions for the
Maxwell-Boltzmann-Bose-Einstein-Fermi-Dirac (MBBEFD) Family of
Distributions
Description: Provides probability mass, distribution, quantile, random variate
generation, and method-of-moments parameter fitting for the MBBEFD family of
distributions used in insurance modeling as described in Bernegger (1997)
<doi:10.2143/AST.27.1.563208> without any external dependencies.
Author: Avraham Adler [aut, cre, cph]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between MBBEFDLite versions 0.1.0 dated 2026-01-08 and 1.0.0 dated 2026-03-10
DESCRIPTION | 6 - MD5 | 42 +++---- NAMESPACE | 3 R/mbbefd.R | 7 - R/mom.R | 264 +++++++++++++++++++++++++++++++++++---------- build/partial.rdb |binary inst/CITATION | 2 inst/NEWS.Rd | 58 +++++++-- inst/tinytest/test_MoMmb.R | 89 ++++++++++++--- inst/tinytest/test_dilog.R |only inst/tinytest/test_rmb.R | 3 man/MBBEFDLite-internal.Rd | 9 + man/MoMmb.Rd | 83 +++++++++++--- man/dpqrmb.Rd | 19 +-- man/ecmb.Rd | 2 src/MBBEFDLite.h | 3 src/Makevars | 12 +- src/dilog.c |only src/dmb.c | 70 ++++++++--- src/ecmb.c | 76 +++++++++--- src/init.c | 2 src/pmb.c | 92 ++++++++++++--- src/qrmb.c | 78 +++++++++---- 23 files changed, 698 insertions(+), 222 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-21 0.1.1
2026-02-12 0.1.0
Title: Seamless Access to World Bank International Debt Statistics
(IDS)
Description: Access and analyze the World Bank's International Debt Statistics
(IDS) <https://www.worldbank.org/en/programs/debt-statistics/ids>.
IDS provides creditor-debtor relationships between countries, regions, and
institutions. 'wbids' enables users to download, process and work with IDS
series across multiple geographies, counterparts, and time periods.
Author: Teal Emery [aut, cre],
Teal Insights [cph],
Christoph Scheuch [aut] ,
Christopher Smith [ctb]
Maintainer: Teal Emery <lte@tealinsights.com>
Diff between wbids versions 1.1.3 dated 2025-12-20 and 1.1.4 dated 2026-03-10
DESCRIPTION | 6 +- MD5 | 18 ++++---- NEWS.md | 75 ++++++++++++++++------------------ README.md | 24 +++++----- man/ids_bulk.Rd | 2 man/ids_bulk_files.Rd | 2 man/ids_bulk_series.Rd | 2 man/ids_get_ed.Rd | 2 tests/testthat/test-ids_get.R | 8 +++ tests/testthat/test-perform_request.R | 9 ++++ 10 files changed, 82 insertions(+), 66 deletions(-)
Title: Utility Functions for 'spatstat'
Description: Contains utility functions for the 'spatstat' family of packages
which may also be useful for other purposes.
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.utils versions 3.2-1 dated 2026-01-10 and 3.2-2 dated 2026-03-10
DESCRIPTION | 8 ++++---- MD5 | 23 ++++++++++++----------- NAMESPACE | 1 + NEWS | 11 +++++++++++ R/utilseq.R | 2 +- R/utiltext.R | 26 +++++++++++++++++++++++++- inst/doc/packagesizes.txt | 2 +- inst/info/packagesizes.txt | 2 +- man/capitalise.Rd |only man/difflong.Rd | 2 +- man/macros/defns.Rd | 5 ++++- man/orifnull.Rd | 2 +- man/spatstat.utils-package.Rd | 3 ++- 13 files changed, 64 insertions(+), 23 deletions(-)
More information about spatstat.utils at CRAN
Permanent link
Title: Data Source Catalogues Online for Southern Ocean Ecosystem
Research
Description: Obtains lists of files of remote sensing collections for Southern Ocean surface
properties. Commonly used data sources of sea surface temperature, sea ice concentration, and
altimetry products such as sea surface height and sea surface currents are cached in object storage
on the Pawsey Supercomputing Research Centre facility. Patterns of working to retrieve data from these object storage
catalogues are described. The catalogues include complete collections of datasets Reynolds et al. (2008)
"NOAA Optimum Interpolation Sea Surface Temperature (OISST) Analysis, Version 2.1" <doi:10.7289/V5SQ8XB5>,
Spreen et al. (2008) "Artist Advanced Microwave Scanning Radiometer for Earth Observing System (AMSR-E)
sea ice concentration" <doi:10.1029/2005JC003384>. In future releases helpers will be added to identify
particular data collections and target specific dates for earth observation data for reading, as well as
helpers to retrieve data set citation and provenance details. This wor [...truncated...]
Author: Michael D. Sumner [aut, cre],
Aleks Terauds [cph, ctb] ')
Maintainer: Michael D. Sumner <michael.sumner@aad.gov.au>
Diff between sooty versions 0.6.0 dated 2026-03-03 and 0.6.1 dated 2026-03-10
DESCRIPTION | 8 - MD5 | 26 ++-- NEWS.md | 6 + R/000-cache.R | 75 +++++++++----- R/datasource.R | 63 ++++++----- R/objects.R | 30 +++-- R/zzz.R | 4 README.md | 164 +++++++++++++------------------ man/available_datasets.Rd | 6 - man/datasource.Rd | 34 +++--- man/figures/README-unnamed-chunk-2-1.png |binary man/sooty_cache_info.Rd | 20 +++ man/sooty_files.Rd | 23 ++-- tests/testthat/test-files.R | 58 ++++++++-- 14 files changed, 299 insertions(+), 218 deletions(-)
Title: 'C++' Implementations of Functional Enrichment Analysis
Description: Fast implementations of functional enrichment analysis methods using 'C++' via 'Rcpp'.
Currently provides Over-Representation Analysis (ORA) and Gene Set Enrichment Analysis (GSEA).
The multilevel GSEA algorithm is derived from the 'fgsea' package.
Methods are described in Subramanian et al. (2005) <doi:10.1073/pnas.0506580102> and Korotkevich et al. (2021) <doi:10.1101/060012>.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between enrichit versions 0.1.2 dated 2026-02-26 and 0.1.3 dated 2026-03-10
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 6 ++++++ R/gsea.R | 8 ++++++++ R/ora_gson.R | 48 ++++++++++++++++++++++++------------------------ inst/doc/enrichit.html | 6 +++--- 6 files changed, 49 insertions(+), 35 deletions(-)
Title: A 'DuckDB'-Backed Version of 'dplyr'
Description: A drop-in replacement for 'dplyr', powered by 'DuckDB' for
performance. Offers convenient utilities for working with in-memory and
larger-than-memory data while retaining full 'dplyr' compatibility.
Author: Hannes Muehleisen [aut] ,
Kirill Mueller [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckplyr versions 1.2.0 dated 2026-02-25 and 1.2.1 dated 2026-03-10
DESCRIPTION | 6 MD5 | 40 ++-- NEWS.md | 11 + R/compute_csv.R | 5 R/compute_parquet.R | 5 R/last.R | 26 +++ inst/doc/duckdb.html | 10 - inst/doc/extend.html | 8 inst/doc/fallback.html | 2 inst/doc/large.html | 4 inst/doc/limits.html | 8 inst/doc/prudence.html | 4 man/as_duckplyr_df.Rd | 2 man/duckdb_tibble.Rd | 8 man/duckplyr-package.Rd | 1 man/new_relational.Rd | 4 man/slice_head.duckplyr_df.Rd | 2 man/unsupported.Rd | 60 +++---- tests/testthat/test-compute_csv.R | 12 + tests/testthat/test-compute_parquet.R | 16 + tests/testthat/test-rel_api.R | 285 +++++++++++++++++++++++++++++----- 21 files changed, 402 insertions(+), 117 deletions(-)
Title: Simulate Dynamic Networks using Exponential Random Graph Models
(ERGM) Family
Description: Functions are provided to fit temporal lag models to dynamic
networks. The models are build on top of exponential random graph models (ERGM) framework. There are
functions for simulating or forecasting networks for future time points.
Abhirup Mallik & Zack W. Almquist (2019) Stable Multiple Time Step Simulation/Prediction From Lagged Dynamic Network Regression Models, Journal of Computational and Graphical Statistics, 28:4, 967-979, <DOI: 10.1080/10618600.2019.1594834>.
Author: Abhirup Mallik [aut, cre],
Zack Almquist [aut]
Maintainer: Abhirup Mallik <abhirupkgp@gmail.com>
Diff between dnr versions 0.3.5 dated 2020-11-30 and 0.3.6 dated 2026-03-10
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 24 ++++++++++++++++++++++-- R/dnr.R | 4 ++-- R/paramVertex.R | 3 +-- R/utilities.R | 4 ++-- R/vertexStats.R | 2 +- build/vignette.rds |binary inst/doc/dnr_vignette.pdf |binary man/dnr.Rd | 2 +- 10 files changed, 41 insertions(+), 22 deletions(-)
Title: Optimal Transport Weights for Causal Inference
Description: Uses optimal transport distances to find probabilistic
matching estimators for causal inference.
These methods are described in Dunipace, Eric (2021) <doi:10.48550/arXiv.2109.01991>.
The package will build the weights, estimate treatment effects, and
calculate confidence intervals via the methods described in the paper.
The package also supports several other methods as described in the help
files.
Author: Eric Dunipace [aut, cre]
Maintainer: Eric Dunipace <edunipace@mail.harvard.edu>
Diff between causalOT versions 1.0.3 dated 2026-02-14 and 1.0.4 dated 2026-03-10
DESCRIPTION | 10 - MD5 | 22 +-- NEWS.md | 7 + R/cotOOP.R | 109 +++++++++++++----- R/utils.R | 32 ++++- build/vignette.rds |binary man/Measure.Rd | 38 ++++-- man/OTProblem.Rd | 237 +++++++++++++++++++++++++++------------- tests/testthat/test-PSIS.R | 6 - tests/testthat/test-SCM.R | 6 - tests/testthat/test-cotOOP.R | 2 tests/testthat/test-dual_opts.R | 26 +++- 12 files changed, 339 insertions(+), 156 deletions(-)
Title: General-Purpose MCMC and SMC Samplers and Tools for Bayesian
Statistics
Description: General-purpose MCMC and SMC samplers, as well as plots and
diagnostic functions for Bayesian statistics, with a particular focus on
calibrating complex system models. Implemented samplers include various
Metropolis MCMC variants (including adaptive and/or delayed rejection MH), the
T-walk, two differential evolution MCMCs, two DREAM MCMCs, and a sequential
Monte Carlo (SMC) particle filter.
Author: Florian Hartig [aut, cre] ,
Francesco Minunno [aut],
Stefan Paul [aut],
David Cameron [ctb],
Tankred Ott [ctb],
Maximilian Pichler [ctb]
Maintainer: Florian Hartig <florian.hartig@biologie.uni-regensburg.de>
Diff between BayesianTools versions 0.1.8 dated 2023-01-30 and 0.1.9 dated 2026-03-10
BayesianTools-0.1.8/BayesianTools/R/convertCoda.R |only BayesianTools-0.1.8/BayesianTools/man/BayesianTools.Rd |only BayesianTools-0.1.9/BayesianTools/DESCRIPTION | 21 BayesianTools-0.1.9/BayesianTools/MD5 | 242 - BayesianTools-0.1.9/BayesianTools/NAMESPACE | 1 BayesianTools-0.1.9/BayesianTools/NEWS.md | 13 BayesianTools-0.1.9/BayesianTools/R/BayesianSetupGenerateParallel.R | 26 BayesianTools-0.1.9/BayesianTools/R/BayesianTools.R | 13 BayesianTools-0.1.9/BayesianTools/R/MAP.R | 4 BayesianTools-0.1.9/BayesianTools/R/SBC.R | 6 BayesianTools-0.1.9/BayesianTools/R/SMC.R | 7 BayesianTools-0.1.9/BayesianTools/R/VSEM.R | 11 BayesianTools-0.1.9/BayesianTools/R/WAIC.R | 5 BayesianTools-0.1.9/BayesianTools/R/blockUpdate.R | 8 BayesianTools-0.1.9/BayesianTools/R/classBayesianOutput.R | 29 BayesianTools-0.1.9/BayesianTools/R/classBayesianSetup.R | 38 BayesianTools-0.1.9/BayesianTools/R/classLikelihood.R | 21 BayesianTools-0.1.9/BayesianTools/R/classMcmcSampler.R | 41 BayesianTools-0.1.9/BayesianTools/R/classMcmcSamplerList.R | 10 BayesianTools-0.1.9/BayesianTools/R/classPosterior.R | 7 BayesianTools-0.1.9/BayesianTools/R/classPrior.R | 29 BayesianTools-0.1.9/BayesianTools/R/classSMCSamplerList.R | 7 BayesianTools-0.1.9/BayesianTools/R/classSmcSampler.R | 21 BayesianTools-0.1.9/BayesianTools/R/codaFunctions.R | 62 BayesianTools-0.1.9/BayesianTools/R/getVolume.R | 10 BayesianTools-0.1.9/BayesianTools/R/marginalLikelihood.R | 14 BayesianTools-0.1.9/BayesianTools/R/mcmcDE.R | 31 BayesianTools-0.1.9/BayesianTools/R/mcmcDEzs.R | 28 BayesianTools-0.1.9/BayesianTools/R/mcmcDREAM.R | 39 BayesianTools-0.1.9/BayesianTools/R/mcmcDREAM_helperFunctions.R | 12 BayesianTools-0.1.9/BayesianTools/R/mcmcDREAMzs.R | 42 BayesianTools-0.1.9/BayesianTools/R/mcmcFrancesco.R | 10 BayesianTools-0.1.9/BayesianTools/R/mcmcMetropolis.R | 12 BayesianTools-0.1.9/BayesianTools/R/mcmcMultipleChains.R | 4 BayesianTools-0.1.9/BayesianTools/R/mcmcRun.R | 33 BayesianTools-0.1.9/BayesianTools/R/mcmcTwalk.R | 18 BayesianTools-0.1.9/BayesianTools/R/mcmcTwalk_helperFunctions.R | 6 BayesianTools-0.1.9/BayesianTools/R/plotCorrelationDensity.r | 5 BayesianTools-0.1.9/BayesianTools/R/plotDiagnostic.R | 11 BayesianTools-0.1.9/BayesianTools/R/plotMarginals.R | 17 BayesianTools-0.1.9/BayesianTools/R/plotSensitivityOAT.R | 19 BayesianTools-0.1.9/BayesianTools/R/plotTrace.R | 5 BayesianTools-0.1.9/BayesianTools/R/proposalGenerator.R | 9 BayesianTools-0.1.9/BayesianTools/R/testFunctions.R | 3 BayesianTools-0.1.9/BayesianTools/R/utils-Numerics.R | 1 BayesianTools-0.1.9/BayesianTools/R/utils.R | 7 BayesianTools-0.1.9/BayesianTools/build/partial.rdb |only BayesianTools-0.1.9/BayesianTools/build/vignette.rds |binary BayesianTools-0.1.9/BayesianTools/inst/doc/BayesianTools.R | 412 +- BayesianTools-0.1.9/BayesianTools/inst/doc/BayesianTools.Rmd | 459 +-- BayesianTools-0.1.9/BayesianTools/inst/doc/BayesianTools.html | 1381 ++++------ BayesianTools-0.1.9/BayesianTools/inst/doc/InterfacingAModel.R | 168 - BayesianTools-0.1.9/BayesianTools/inst/doc/InterfacingAModel.Rmd | 139 - BayesianTools-0.1.9/BayesianTools/inst/doc/InterfacingAModel.html | 481 +-- BayesianTools-0.1.9/BayesianTools/inst/examples/VSEMHelp.R | 2 BayesianTools-0.1.9/BayesianTools/inst/examples/createLikelihoodHelp.R |only BayesianTools-0.1.9/BayesianTools/inst/examples/createPrior.R | 9 BayesianTools-0.1.9/BayesianTools/inst/examples/marginalLikelihoodHelp.R | 8 BayesianTools-0.1.9/BayesianTools/inst/examples/mcmcRun.R | 7 BayesianTools-0.1.9/BayesianTools/inst/examples/plotSensitivityHelp.R | 6 BayesianTools-0.1.9/BayesianTools/inst/examples/plotTimeSeriesResultsHelp.R | 3 BayesianTools-0.1.9/BayesianTools/inst/examples/proposalGeneratorHelp.R | 1 BayesianTools-0.1.9/BayesianTools/inst/examples/testLinearModel.R | 1 BayesianTools-0.1.9/BayesianTools/inst/examples/tracePlotHelp.R | 2 BayesianTools-0.1.9/BayesianTools/man/AdaptpCR.Rd | 4 BayesianTools-0.1.9/BayesianTools/man/BayesianTools-package.Rd |only BayesianTools-0.1.9/BayesianTools/man/DE.Rd | 27 BayesianTools-0.1.9/BayesianTools/man/DEzs.Rd | 28 BayesianTools-0.1.9/BayesianTools/man/DREAM.Rd | 39 BayesianTools-0.1.9/BayesianTools/man/DREAMzs.Rd | 42 BayesianTools-0.1.9/BayesianTools/man/M.Rd | 10 BayesianTools-0.1.9/BayesianTools/man/MAP.Rd | 6 BayesianTools-0.1.9/BayesianTools/man/Metropolis.Rd | 14 BayesianTools-0.1.9/BayesianTools/man/Twalk.Rd | 18 BayesianTools-0.1.9/BayesianTools/man/TwalkMove.Rd | 4 BayesianTools-0.1.9/BayesianTools/man/VSEM.Rd | 6 BayesianTools-0.1.9/BayesianTools/man/VSEMcreateLikelihood.Rd | 4 BayesianTools-0.1.9/BayesianTools/man/WAIC.Rd | 4 BayesianTools-0.1.9/BayesianTools/man/applySettingsDefault.Rd | 48 BayesianTools-0.1.9/BayesianTools/man/calibrationTest.Rd | 4 BayesianTools-0.1.9/BayesianTools/man/combineChains.Rd | 4 BayesianTools-0.1.9/BayesianTools/man/convertCoda.Rd | 20 BayesianTools-0.1.9/BayesianTools/man/correctThin.Rd | 2 BayesianTools-0.1.9/BayesianTools/man/correlationPlot.Rd | 4 BayesianTools-0.1.9/BayesianTools/man/createBayesianSetup.Rd | 24 BayesianTools-0.1.9/BayesianTools/man/createBetaPrior.Rd | 9 BayesianTools-0.1.9/BayesianTools/man/createLikelihood.Rd | 57 BayesianTools-0.1.9/BayesianTools/man/createMcmcSamplerList.Rd | 2 BayesianTools-0.1.9/BayesianTools/man/createPosterior.Rd | 4 BayesianTools-0.1.9/BayesianTools/man/createPrior.Rd | 26 BayesianTools-0.1.9/BayesianTools/man/createPriorDensity.Rd | 9 BayesianTools-0.1.9/BayesianTools/man/createProposalGenerator.Rd | 9 BayesianTools-0.1.9/BayesianTools/man/createSmcSamplerList.Rd | 2 BayesianTools-0.1.9/BayesianTools/man/createTruncatedNormalPrior.Rd | 9 BayesianTools-0.1.9/BayesianTools/man/createUniformPrior.Rd | 9 BayesianTools-0.1.9/BayesianTools/man/figures |only BayesianTools-0.1.9/BayesianTools/man/generateCRvalues.Rd | 4 BayesianTools-0.1.9/BayesianTools/man/generateParallelExecuter.Rd | 17 BayesianTools-0.1.9/BayesianTools/man/generateTestDensityMultiNormal.Rd | 2 BayesianTools-0.1.9/BayesianTools/man/getBlockSettings.Rd | 2 BayesianTools-0.1.9/BayesianTools/man/getSample.Rd | 60 BayesianTools-0.1.9/BayesianTools/man/getVolume.Rd | 6 BayesianTools-0.1.9/BayesianTools/man/makeObjectClassCodaMCMC.Rd | 6 BayesianTools-0.1.9/BayesianTools/man/marginalLikelihood.Rd | 18 BayesianTools-0.1.9/BayesianTools/man/marginalPlot.Rd | 12 BayesianTools-0.1.9/BayesianTools/man/mcmcMultipleChains.Rd | 4 BayesianTools-0.1.9/BayesianTools/man/package-deprecated.Rd | 2 BayesianTools-0.1.9/BayesianTools/man/plot.mcmcSampler.Rd |only BayesianTools-0.1.9/BayesianTools/man/plot.smcSampler.Rd |only BayesianTools-0.1.9/BayesianTools/man/plotDiagnostic.Rd | 8 BayesianTools-0.1.9/BayesianTools/man/plotSensitivity.Rd | 23 BayesianTools-0.1.9/BayesianTools/man/print.BayesianSetup.Rd |only BayesianTools-0.1.9/BayesianTools/man/print.mcmcSampler.Rd |only BayesianTools-0.1.9/BayesianTools/man/print.prior.Rd |only BayesianTools-0.1.9/BayesianTools/man/print.smcSampler.Rd |only BayesianTools-0.1.9/BayesianTools/man/rescale.Rd | 2 BayesianTools-0.1.9/BayesianTools/man/runMCMC.Rd | 12 BayesianTools-0.1.9/BayesianTools/man/scaleMatrix.Rd | 2 BayesianTools-0.1.9/BayesianTools/man/smcSampler.Rd | 6 BayesianTools-0.1.9/BayesianTools/man/stopParallel.Rd | 2 BayesianTools-0.1.9/BayesianTools/man/summary.mcmcSampler.Rd |only BayesianTools-0.1.9/BayesianTools/man/summary.smcSampler.Rd |only BayesianTools-0.1.9/BayesianTools/man/testLinearModel.Rd | 1 BayesianTools-0.1.9/BayesianTools/man/tracePlot.Rd | 6 BayesianTools-0.1.9/BayesianTools/man/updateGroups.Rd | 4 BayesianTools-0.1.9/BayesianTools/vignettes/BayesianTools.Rmd | 459 +-- BayesianTools-0.1.9/BayesianTools/vignettes/InterfacingAModel.Rmd | 139 - 127 files changed, 2746 insertions(+), 2536 deletions(-)