Title: Datasets and Basic Statistics for Symbolic Data Analysis
Description: Collects a diverse range of symbolic data and offers a comprehensive set of functions that facilitate the conversion of traditional data into the symbolic data format.
Author: Po-Wei Chen [aut],
Chun-houh Chen [aut],
Han-Ming Wu [cre]
Maintainer: Han-Ming Wu <wuhm@g.nccu.edu.tw>
Diff between dataSDA versions 0.1.8 dated 2026-02-11 and 0.2.5 dated 2026-03-14
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dataSDA-0.2.5/dataSDA/DESCRIPTION | 15 dataSDA-0.2.5/dataSDA/MD5 | 356 dataSDA-0.2.5/dataSDA/NAMESPACE | 20 dataSDA-0.2.5/dataSDA/NEWS.md | 155 dataSDA-0.2.5/dataSDA/R/data.R | 3794 +++++++++- dataSDA-0.2.5/dataSDA/R/histogram_stats.R | 258 dataSDA-0.2.5/dataSDA/R/histogram_utils.R | 20 dataSDA-0.2.5/dataSDA/R/interval_dist.R | 29 dataSDA-0.2.5/dataSDA/R/interval_format_conversions.R | 1900 +++-- dataSDA-0.2.5/dataSDA/R/interval_geometry.R | 7 dataSDA-0.2.5/dataSDA/R/interval_position.R | 7 dataSDA-0.2.5/dataSDA/R/interval_shape.R | 4 dataSDA-0.2.5/dataSDA/R/interval_similarity.R | 7 dataSDA-0.2.5/dataSDA/R/interval_stats.R | 17 dataSDA-0.2.5/dataSDA/R/interval_uncertainty.R | 11 dataSDA-0.2.5/dataSDA/R/interval_utils.R | 18 dataSDA-0.2.5/dataSDA/R/utilities.R | 1552 ++++ dataSDA-0.2.5/dataSDA/README.md | 329 dataSDA-0.2.5/dataSDA/data/age_pyramids.hist.rda |only dataSDA-0.2.5/dataSDA/data/airline_flights2.modal.rda |only dataSDA-0.2.5/dataSDA/data/bird_color_taxonomy.hist.rda |only dataSDA-0.2.5/dataSDA/data/blood.hist.rda |only dataSDA-0.2.5/dataSDA/data/car_models.int.rda |only dataSDA-0.2.5/dataSDA/data/cardiological.int.rda |only dataSDA-0.2.5/dataSDA/data/census.mix.rda |only dataSDA-0.2.5/dataSDA/data/china_climate_month.hist.rda |only dataSDA-0.2.5/dataSDA/data/china_climate_season.hist.rda |only dataSDA-0.2.5/dataSDA/data/china_temp_monthly.int.rda |only dataSDA-0.2.5/dataSDA/data/cholesterol.hist.rda |only dataSDA-0.2.5/dataSDA/data/county_income_gender.hist.rda |only dataSDA-0.2.5/dataSDA/data/cover_types.hist.rda |only dataSDA-0.2.5/dataSDA/data/crime.modal.rda |only dataSDA-0.2.5/dataSDA/data/crime2.modal.rda |only dataSDA-0.2.5/dataSDA/data/crude_oil_wti.its.rda |only dataSDA-0.2.5/dataSDA/data/djia.its.rda |only dataSDA-0.2.5/dataSDA/data/ecoli_routes.int.rda |only dataSDA-0.2.5/dataSDA/data/energy_usage.distr.rda |only dataSDA-0.2.5/dataSDA/data/environment.mix.rda |only dataSDA-0.2.5/dataSDA/data/euro_usd.its.rda |only dataSDA-0.2.5/dataSDA/data/exchange_rate_returns.hist.rda |only dataSDA-0.2.5/dataSDA/data/flights_detail.hist.rda |only dataSDA-0.2.5/dataSDA/data/french_agriculture.hist.rda |only dataSDA-0.2.5/dataSDA/data/freshwater_fish.int.rda |only dataSDA-0.2.5/dataSDA/data/fuel_consumption.modal.rda |only dataSDA-0.2.5/dataSDA/data/fungi.int.rda |only dataSDA-0.2.5/dataSDA/data/genome_abundances.int.rda |only dataSDA-0.2.5/dataSDA/data/glucose.hist.rda |only dataSDA-0.2.5/dataSDA/data/hardwood.hist.rda |only dataSDA-0.2.5/dataSDA/data/hdi_gender.int.rda |only dataSDA-0.2.5/dataSDA/data/health_insurance2.modal.rda |only dataSDA-0.2.5/dataSDA/data/hematocrit.hist.rda |only dataSDA-0.2.5/dataSDA/data/hematocrit_hemoglobin.hist.rda |only dataSDA-0.2.5/dataSDA/data/hemoglobin.hist.rda |only dataSDA-0.2.5/dataSDA/data/hierarchy.hist.rda |only dataSDA-0.2.5/dataSDA/data/hospital.hist.rda |only dataSDA-0.2.5/dataSDA/data/household_characteristics.distr.rda |only 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dataSDA-0.2.5/dataSDA/tests/testthat/test-set_variable_format.R | 52 dataSDA-0.2.5/dataSDA/vignettes/dataSDA_intro.Rmd | 842 ++ 268 files changed, 11648 insertions(+), 2644 deletions(-)
Title: Bayesian Penalized Quantile Regression
Description: Bayesian regularized quantile regression utilizing two major classes of shrinkage priors
(the spike-and-slab priors and the horseshoe family of priors) leads to efficient Bayesian
shrinkage estimation, variable selection and valid statistical inference. In this package,
we have implemented robust Bayesian variable selection with spike-and-slab priors under
high-dimensional linear regression models (Fan et al. (2024) <doi:10.3390/e26090794> and
Ren et al. (2023) <doi:10.1111/biom.13670>), and regularized quantile varying
coefficient models (Zhou et al.(2023) <doi:10.1016/j.csda.2023.107808>). In particular,
valid robust Bayesian inferences under both models in the presence of heavy-tailed errors
can be validated on finite samples. Additional models with spike-and-slab priors include
robust Bayesian group LASSO and robust binary Bayesian LASSO (Fan and Wu (2025)
<doi:10.1002/sta4.70078>). Besides, robust sparse Bayesian regression with the horseshoe
family of (hor [...truncated...]
Author: Kun Fan [aut],
Cen Wu [aut, cre],
Jie Ren [aut],
Xiaoxi Li [aut],
Fei Zhou [aut]
Maintainer: Cen Wu <wucen@ksu.edu>
Diff between pqrBayes versions 1.2.0 dated 2025-12-07 and 1.2.1 dated 2026-03-14
DESCRIPTION | 12 ++--- MD5 | 51 +++++++++++++------------ NEWS.md | 4 + R/NonRobust.R |only R/coverage.R | 8 +-- R/estimation.R | 6 +- R/pqrBayes-package.R | 14 +++--- R/pqrBayes.R | 36 ++++++++--------- R/pqrBayes_bin.R | 11 ++++- R/pqrBayes_g.R | 10 ++++ R/pqrBayes_lin.R | 23 ++++++++--- R/pqrBayes_vc.R | 10 ++++ R/predict.pqrBayes.R | 17 ++++---- R/predict_bin.R | 2 R/predict_lin.R | 76 +++++++++++++------------------------ R/predict_lin_nonrobust.R |only R/predict_lin_robust.R |only R/predict_vc.R | 91 ++++++++++++--------------------------------- R/predict_vc_nonrobust.R |only R/predict_vc_robust.R |only R/select.pqrBayes.R | 2 R/select_lin.R | 5 +- README.md | 34 ++++++++-------- man/coverage.Rd | 8 +-- man/estimation.pqrBayes.Rd | 6 +- man/pqrBayes-package.Rd | 14 +++--- man/pqrBayes.Rd | 38 +++++++++--------- man/predict_pqrBayes.Rd | 8 ++- man/select.pqrBayes.Rd | 2 29 files changed, 240 insertions(+), 248 deletions(-)
Title: Density Deconvolution Using Bayesian Semiparametric Methods
Description: Estimates the density of a variable in a measurement error setup, potentially with an excess of zero values. For more details see Sarkar (2021) <doi:10.1080/01621459.2020.1782220>.
Author: Blake Moya [aut],
Mainak Manna [cre, aut],
Abhra Sarkar [aut],
The University of Texas at Austin [cph, fnd]
Maintainer: Mainak Manna <mainakmanna29@utexas.edu>
Diff between BayesDecon versions 0.1.4 dated 2026-01-10 and 0.1.6 dated 2026-03-14
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/bdeconv.R | 27 ++++++++++++++++++--------- R/subset.R | 2 +- man/bdeconv.Rd | 15 +++++++++++---- 5 files changed, 38 insertions(+), 22 deletions(-)
Title: Threshold Sweep Extensions for Qualitative Comparative Analysis
Description: Provides threshold sweep methods for Qualitative Comparative
Analysis (QCA). Implements Condition Threshold Sweep-Single (CTS-S),
Condition Threshold Sweep-Multiple (CTS-M), Outcome Threshold Sweep (OTS),
and Dual Threshold Sweep (DTS) for systematic exploration of threshold
calibration effects on crisp-set QCA results. These methods extend
traditional robustness approaches by treating threshold variation as an
exploratory tool for discovering causal structures. Also provides Fiss
(2011) <doi:10.5465/amj.2011.60263120> core/peripheral condition
classification via compute_fiss_core() and generate_fiss_chart(), enabling
four-symbol configuration charts that distinguish core conditions (present
in both parsimonious and intermediate solutions) from peripheral conditions
(intermediate only). Built on top of the 'QCA' package by Dusa (2019)
<doi:10.1007/978-3-319-75668-4>, with function arguments following 'QCA'
conventions. Based on set-theoretic methods by Ragin (2008)
<doi: [...truncated...]
Author: Yuki Toyoda [aut, cre],
Japan Society for the Promotion of Science [fnd]
Maintainer: Yuki Toyoda <yuki.toyoda.ds@hosei.ac.jp>
Diff between TSQCA versions 1.3.0 dated 2026-02-18 and 1.3.2 dated 2026-03-14
DESCRIPTION | 22 MD5 | 59 - NAMESPACE | 3 NEWS.md | 127 +++ R/TSQCA-package.R | 466 ++++++------ R/tsqca_config_chart.R | 24 R/tsqca_cts.R | 4 R/tsqca_fiss_core.R |only R/tsqca_ots_dts.R | 8 R/tsqca_report.R | 224 ++++- inst/doc/TSQCA_Reproducible_EN.R | 56 + inst/doc/TSQCA_Reproducible_EN.Rmd | 117 ++- inst/doc/TSQCA_Reproducible_EN.html | 200 ++++- inst/doc/TSQCA_Tutorial_EN.R | 62 + inst/doc/TSQCA_Tutorial_EN.Rmd | 237 ++++-- inst/doc/TSQCA_Tutorial_EN.html | 1397 +++++++++++++++++++----------------- man/SYMBOL_SETS_FISS.Rd |only man/TSQCA-package.Rd | 2 man/build_fiss_matrix.Rd |only man/classify_term_conditions.Rd |only man/compute_fiss_core.Rd |only man/ctSweepM.Rd | 3 man/ctSweepS.Rd | 3 man/dtSweep.Rd | 3 man/extract_cond_status_map.Rd |only man/extract_sol_terms.Rd |only man/generate_fiss_chart.Rd |only man/generate_report.Rd | 215 ++--- man/otSweep.Rd | 5 man/print_fiss_summary.Rd |only man/run_parsimonious.Rd |only man/write_full_report.Rd | 3 man/write_simple_report.Rd | 3 tests/testthat/test-fiss_core.R |only vignettes/TSQCA_Reproducible_EN.Rmd | 117 ++- vignettes/TSQCA_Tutorial_EN.Rmd | 237 ++++-- 36 files changed, 2314 insertions(+), 1283 deletions(-)
Title: Descriptive Statistics and Data Management Tools
Description: Provides tools for early data exploration,
variable inspection, and quick tabulation workflows in 'R'. Summarizes
variable metadata, labels, classes, missing values, and representative
values, with support for readable frequency tables, cross-tabulations,
and APA-style reporting tables. Includes helpers for interactive
codebooks, variable label extraction, clipboard export, and row-wise
descriptive summaries. Designed to make initial data analysis faster,
clearer, and easier to work with in practice.
Author: Amal Tawfik [aut, cre, cph]
Maintainer: Amal Tawfik <amal.tawfik@hesav.ch>
Diff between spicy versions 0.4.2 dated 2026-03-05 and 0.5.0 dated 2026-03-14
DESCRIPTION | 22 - MD5 | 87 ++-- NAMESPACE | 4 NEWS.md | 30 + R/code_book.R | 30 - R/copy_clipboard.R | 70 ++- R/count_n.R | 90 +++- R/cramer_v.R | 34 + R/cross_tab.R | 292 ++++++++++----- R/freq.R | 621 +++++++++++++++++---------------- R/freq_print.R | 417 +++++++++++----------- R/globals.R | 2 R/label_from_names.R | 12 R/mean_n.R | 99 +++-- R/spicy-package.R | 3 R/sum_n.R | 99 +++-- R/table_apa.R |only R/tables_ascii.R | 654 ++++++++++++++++++----------------- R/varlist.R | 106 +++-- README.md | 76 ++-- man/build_ascii_table.Rd | 10 man/code_book.Rd | 4 man/copy_clipboard.Rd | 12 man/count_n.Rd | 22 - man/cramer_v.Rd | 5 man/cross_tab.Rd | 31 + man/figures/logo.png |binary man/figures/logo_dragon.png |only man/figures/logo_old.png |only man/freq.Rd | 3 man/mean_n.Rd | 13 man/print.spicy_freq_table.Rd | 4 man/spicy-package.Rd | 2 man/spicy_print_table.Rd | 22 - man/sum_n.Rd | 13 man/table_apa.Rd |only tests/testthat/test-code_book.R | 1 tests/testthat/test-copy_clipboard.R | 24 - tests/testthat/test-count_n.R | 92 +++- tests/testthat/test-cramer_v.R | 28 - tests/testthat/test-cross_tab.R | 198 +++++----- tests/testthat/test-freq.R | 64 +-- tests/testthat/test-mean_n.R | 36 - tests/testthat/test-sum_n.R | 36 - tests/testthat/test-table_apa.R |only tests/testthat/test-tables_ascii.R | 6 tools/benchmark_cross_tab.R | 65 +++ 47 files changed, 1987 insertions(+), 1452 deletions(-)
Title: qPCR Data Analysis
Description: Tools for qPCR data analysis using Delta Ct and Delta Delta Ct methods, including t-test, Wilcoxon-test, ANOVA models, and publication-ready visualizations. The package supports multiple target, and multiple reference genes, and uses a calculation framework adopted from Ganger et al. (2017) <doi:10.1186/s12859-017-1949-5> and Taylor et al. (2019) <doi:10.1016/j.tibtech.2018.12.002>, covering both the Livak and Pfaffl methods.
Author: Ghader Mirzaghaderi [aut, cre, cph]
Maintainer: Ghader Mirzaghaderi <mirzaghaderi@gmail.com>
Diff between rtpcr versions 2.1.5 dated 2026-02-24 and 2.1.6 dated 2026-03-14
rtpcr-2.1.5/rtpcr/inst/doc/Manual.R |only rtpcr-2.1.5/rtpcr/inst/doc/Manual.Rmd |only rtpcr-2.1.5/rtpcr/inst/doc/Manual.html |only rtpcr-2.1.5/rtpcr/inst/shinyapp/README.md |only rtpcr-2.1.5/rtpcr/inst/shinyapp/readme |only rtpcr-2.1.5/rtpcr/man/figures/signif.png |only rtpcr-2.1.5/rtpcr/vignettes/Manual.Rmd |only rtpcr-2.1.6/rtpcr/DESCRIPTION | 6 rtpcr-2.1.6/rtpcr/MD5 | 85 - rtpcr-2.1.6/rtpcr/NEWS.md | 6 rtpcr-2.1.6/rtpcr/R/ANOVA_DCt.R | 64 rtpcr-2.1.6/rtpcr/R/ANOVA_DDCt.R | 74 rtpcr-2.1.6/rtpcr/R/Means_DDCt.R | 3 rtpcr-2.1.6/rtpcr/R/TTEST_DDCt.R | 32 rtpcr-2.1.6/rtpcr/R/WILCOX_DDCt.R | 25 rtpcr-2.1.6/rtpcr/R/globalVariables.R | 2 rtpcr-2.1.6/rtpcr/R/meanTech.R | 11 rtpcr-2.1.6/rtpcr/R/plotFactor.R | 8 rtpcr-2.1.6/rtpcr/build/vignette.rds |binary rtpcr-2.1.6/rtpcr/inst/doc/Method.Rmd | 3 rtpcr-2.1.6/rtpcr/inst/doc/Method.html | 845 +++++++--- rtpcr-2.1.6/rtpcr/inst/doc/manual.R |only rtpcr-2.1.6/rtpcr/inst/doc/manual.Rmd |only rtpcr-2.1.6/rtpcr/inst/doc/manual.html |only rtpcr-2.1.6/rtpcr/inst/extdata/data_2factorBlock3ref.csv | 8 rtpcr-2.1.6/rtpcr/inst/extdata/data_3factor.csv | 6 rtpcr-2.1.6/rtpcr/inst/shinyapp/app.R | 594 ++++--- rtpcr-2.1.6/rtpcr/inst/shinyapp/exp/data_2factorBlock3ref.csv | 8 rtpcr-2.1.6/rtpcr/inst/shinyapp/exp/data_3factor.csv | 6 rtpcr-2.1.6/rtpcr/inst/shinyapp/mean |only rtpcr-2.1.6/rtpcr/inst/shinyapp/rsconnect/shinyapps.io/mirzaghaderi/rtpcr.dcf | 4 rtpcr-2.1.6/rtpcr/inst/shinyapp/www |only rtpcr-2.1.6/rtpcr/man/ANOVA_DCt.Rd | 22 rtpcr-2.1.6/rtpcr/man/ANOVA_DDCt.Rd | 13 rtpcr-2.1.6/rtpcr/man/Means_DDCt.Rd | 3 rtpcr-2.1.6/rtpcr/man/TTEST_DDCt.Rd | 4 rtpcr-2.1.6/rtpcr/man/figures/Rplot02.png |binary rtpcr-2.1.6/rtpcr/man/figures/Rplot03.png |binary rtpcr-2.1.6/rtpcr/man/figures/base.png |binary rtpcr-2.1.6/rtpcr/man/figures/dataStructure1.png |binary rtpcr-2.1.6/rtpcr/man/figures/out.png |binary rtpcr-2.1.6/rtpcr/man/figures/repeated_measure.png |binary rtpcr-2.1.6/rtpcr/man/figures/sampleData1.png |binary rtpcr-2.1.6/rtpcr/man/figures/shiny_rtpcr.png |binary rtpcr-2.1.6/rtpcr/man/figures/techrep.png |binary rtpcr-2.1.6/rtpcr/man/meanTech.Rd | 7 rtpcr-2.1.6/rtpcr/man/plotFactor.Rd | 2 rtpcr-2.1.6/rtpcr/vignettes/Method.Rmd | 3 rtpcr-2.1.6/rtpcr/vignettes/manual.Rmd |only 49 files changed, 1135 insertions(+), 709 deletions(-)
Title: Memory-Efficient, Visualize-Enhanced, Parallel-Accelerated GWAS
Tool
Description: A memory-efficient, visualize-enhanced, parallel-accelerated Genome-Wide Association Study (GWAS) tool. It can
(1) effectively process large data,
(2) rapidly evaluate population structure,
(3) efficiently estimate variance components several algorithms,
(4) implement parallel-accelerated association tests of markers three methods,
(5) globally efficient design on GWAS process computing,
(6) enhance visualization of related information.
'rMVP' contains three models GLM (Alkes Price (2006) <DOI:10.1038/ng1847>), MLM (Jianming Yu (2006) <DOI:10.1038/ng1702>)
and FarmCPU (Xiaolei Liu (2016) <doi:10.1371/journal.pgen.1005767>); variance components estimation methods EMMAX
(Hyunmin Kang (2008) <DOI:10.1534/genetics.107.080101>;), FaSTLMM (method: Christoph Lippert (2011) <DOI:10.1038/nmeth.1681>,
R implementation from 'GAPIT2': You Tang and Xiaolei Liu (2016) <DOI:10.1371/journal.pone.0107684> and
'SUPER': Qishan Wang and Feng Tian (2014) <DOI:10.1371/ [...truncated...]
Author: Lilin Yin [aut],
Haohao Zhang [aut],
Zhenshuang Tang [aut],
Jingya Xu [aut],
Dong Yin [aut],
Zhiwu Zhang [aut],
Xiaohui Yuan [aut],
Mengjin Zhu [aut],
Shuhong Zhao [aut],
Xinyun Li [aut],
Qishan Wang [ctb],
Feng Tian [ctb],
Hyunmin Kang [ctb],
Xiang [...truncated...]
Maintainer: Xiaolei Liu <xll198708@gmail.com>
This is a re-admission after prior archival of version 1.4.5 dated 2025-07-23
Diff between rMVP versions 1.4.5 dated 2025-07-23 and 1.4.6 dated 2026-03-14
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/MVP.Data.r | 22 +++++++++++----------- src/assoc.cpp | 12 ++++++------ src/data_converter.cpp | 10 ++++++++-- src/fit_diago.cpp | 4 ++-- 6 files changed, 36 insertions(+), 30 deletions(-)
Title: Reduced Model Space Bayesian Model Averaging
Description: Implements Bayesian model averaging for settings with many
candidate regressors relative to the available sample size, including
cases where the number of regressors exceeds the number of observations.
By restricting attention to models with at most M regressors, the package
supports reduced model space inference, thereby preserving degrees of
freedom for estimation. It provides posterior summaries, Extreme Bounds
Analysis, model selection procedures, joint inclusion measures, and
graphical tools for exploring model probabilities, model size
distributions, and coefficient distributions. The methodological
approach follows Doppelhofer and Weeks (2009) <doi:10.1002/jae.1046>.
Author: Krzysztof Beck [aut, cre]
Maintainer: Krzysztof Beck <beckkrzysztof@gmail.com>
Diff between rmsBMA versions 0.1.1 dated 2026-03-11 and 0.1.2 dated 2026-03-14
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/g_regression.R | 2 +- R/g_regression_fast.R | 2 +- R/g_regression_fast_HC.R | 2 +- inst/doc/rmsBMA.html | 4 ++-- 6 files changed, 13 insertions(+), 13 deletions(-)
Title: Read 'SurveyXact' Data
Description: Imports data from the 'SurveyXact' commercial service
<https://rambollxact.com>, adds variable labels, and converts value
labels to factors in the same order as exported from 'SurveyXact'.
Author: Stephan Daus [aut, cre]
Maintainer: Stephan Daus <stephus.daus@gmail.com>
This is a re-admission after prior archival of version 0.8.4 dated 2023-03-25
Diff between readSX versions 0.8.4 dated 2023-03-25 and 0.8.8 dated 2026-03-14
readSX-0.8.4/readSX/man/figures |only readSX-0.8.8/readSX/DESCRIPTION | 21 readSX-0.8.8/readSX/LICENSE | 4 readSX-0.8.8/readSX/MD5 | 44 - readSX-0.8.8/readSX/NAMESPACE | 32 readSX-0.8.8/readSX/NEWS.md | 43 - readSX-0.8.8/readSX/R/readSX-package.R | 8 readSX-0.8.8/readSX/R/read_surveyxact.R | 428 ++++++------- readSX-0.8.8/readSX/R/utils.R | 173 ++--- readSX-0.8.8/readSX/R/write_data_for_sx.R | 71 +- readSX-0.8.8/readSX/README.md | 8 readSX-0.8.8/readSX/inst/CITATION | 28 readSX-0.8.8/readSX/inst/WORDLIST | 3 readSX-0.8.8/readSX/man/readSX-package.Rd | 48 - readSX-0.8.8/readSX/man/read_surveyxact.Rd | 4 readSX-0.8.8/readSX/man/write_data_for_sx.Rd | 50 - readSX-0.8.8/readSX/tests/testthat.R | 16 readSX-0.8.8/readSX/tests/testthat/test-prep_data_for_sx.R | 24 readSX-0.8.8/readSX/tests/testthat/test-read_surveyxact.R | 124 +++ readSX-0.8.8/readSX/tests/testthat/test-utils.R | 70 +- 20 files changed, 669 insertions(+), 530 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and an R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 1.4.4 dated 2026-01-28 and 1.5.0 dated 2026-03-14
DESCRIPTION | 12 MD5 | 83 +++--- NEWS.md | 21 + R/backend-dbplyr__duckdb_connection.R | 2 R/cpp11.R | 8 R/relational.R | 40 ++- R/rethrow-gen.R | 8 R/version.R | 2 inst/include/duckdb_types.hpp | 4 man/duckdb.Rd | 2 man/duckdb_connection-class.Rd | 2 man/duckdb_driver-class.Rd | 2 man/duckdb_result-class.Rd | 2 src/Makevars.duckdb | 7 src/connection.cpp | 4 src/convert.cpp | 4 src/cpp11.cpp | 16 - src/database.cpp | 6 src/duckdb.tar.xz |binary src/include/rapi.hpp | 8 src/include/reltoaltrep.hpp | 8 src/include/sources.mk | 2 src/register.cpp | 4 src/relational.cpp | 35 +- src/reltoaltrep.cpp | 160 +++++++++++-- src/rfuns.cpp | 4 src/scan.cpp | 4 src/signal.cpp | 4 src/statement.cpp | 4 src/transform.cpp | 8 src/types.cpp | 4 src/utils.cpp | 4 tests/testthat.R | 12 tests/testthat/_snaps/backend-dbplyr__duckdb_connection.md | 4 tests/testthat/_snaps/error-handling.md | 16 - tests/testthat/_snaps/relational.md | 31 +- tests/testthat/_snaps/types.md | 2 tests/testthat/test-backend-dbplyr__duckdb_connection.R | 10 tests/testthat/test-numeric.R |only tests/testthat/test-readonly.R | 2 tests/testthat/test-relational.R | 104 +++++++- tests/testthat/test-timezone.R | 8 tests/testthat/test-types.R | 1 43 files changed, 514 insertions(+), 150 deletions(-)
Title: Tools to Make Developing R Packages Easier
Description: Collection of package development tools.
Author: Hadley Wickham [aut],
Jim Hester [aut],
Winston Chang [aut],
Jennifer Bryan [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Jennifer Bryan <jenny@posit.co>
Diff between devtools versions 2.4.6 dated 2025-10-03 and 2.5.0 dated 2026-03-14
devtools-2.4.6/devtools/inst/doc/dependencies.Rmd |only devtools-2.4.6/devtools/man/devtools-deprecated.Rd |only devtools-2.4.6/devtools/man/remote-reexports.Rd |only devtools-2.4.6/devtools/tests/testthat/test-build-site.R |only devtools-2.4.6/devtools/vignettes/dependencies.Rmd |only devtools-2.5.0/devtools/DESCRIPTION | 28 devtools-2.5.0/devtools/MD5 | 390 ++--- devtools-2.5.0/devtools/NAMESPACE | 228 +- devtools-2.5.0/devtools/NEWS.md | 32 devtools-2.5.0/devtools/R/R.R | 62 devtools-2.5.0/devtools/R/active.R | 109 - devtools-2.5.0/devtools/R/bash.R | 26 devtools-2.5.0/devtools/R/build-manual.R | 61 devtools-2.5.0/devtools/R/build-readme.R | 226 ++ devtools-2.5.0/devtools/R/build-site.R | 46 devtools-2.5.0/devtools/R/check-devtools.R | 290 +-- devtools-2.5.0/devtools/R/check-doc.R | 179 +- devtools-2.5.0/devtools/R/check-git.R | 54 devtools-2.5.0/devtools/R/check-mac.R | 206 +- devtools-2.5.0/devtools/R/check-win.R | 436 +++-- devtools-2.5.0/devtools/R/check.R | 534 +++--- devtools-2.5.0/devtools/R/create.R | 30 devtools-2.5.0/devtools/R/dev-mode.R | 188 +- devtools-2.5.0/devtools/R/devtools-package.R | 46 devtools-2.5.0/devtools/R/document.R | 70 devtools-2.5.0/devtools/R/git.R | 32 devtools-2.5.0/devtools/R/has-tests.R | 24 devtools-2.5.0/devtools/R/import-standalone-obj-type.R |only devtools-2.5.0/devtools/R/import-standalone-purrr.R |only devtools-2.5.0/devtools/R/import-standalone-types-check.R |only devtools-2.5.0/devtools/R/install.R | 452 +++-- devtools-2.5.0/devtools/R/lint.R | 46 devtools-2.5.0/devtools/R/missing-s3.R | 49 devtools-2.5.0/devtools/R/package-deps.R | 14 devtools-2.5.0/devtools/R/package.R | 190 +- devtools-2.5.0/devtools/R/pkgbuild.R | 94 - devtools-2.5.0/devtools/R/pkgload.R | 67 devtools-2.5.0/devtools/R/r-hub.R | 56 devtools-2.5.0/devtools/R/release.R | 764 +++++----- devtools-2.5.0/devtools/R/reload.R | 69 devtools-2.5.0/devtools/R/remotes.R | 296 ++- devtools-2.5.0/devtools/R/revdep.R | 200 +- devtools-2.5.0/devtools/R/run-examples.R | 241 +-- devtools-2.5.0/devtools/R/run-source.R | 334 ++-- devtools-2.5.0/devtools/R/save-all.R | 26 devtools-2.5.0/devtools/R/session-info.R | 71 devtools-2.5.0/devtools/R/show-news.R | 89 - devtools-2.5.0/devtools/R/sitrep.R | 516 +++--- devtools-2.5.0/devtools/R/spell-check.R | 36 devtools-2.5.0/devtools/R/test.R | 461 +++--- devtools-2.5.0/devtools/R/uninstall.R | 59 devtools-2.5.0/devtools/R/usethis.R | 42 devtools-2.5.0/devtools/R/utils.R | 104 - devtools-2.5.0/devtools/R/vignette-r.R | 134 - devtools-2.5.0/devtools/R/vignettes.R | 274 +-- devtools-2.5.0/devtools/R/wd.R | 42 devtools-2.5.0/devtools/R/zzz.R | 56 devtools-2.5.0/devtools/README.md | 345 ++-- devtools-2.5.0/devtools/build/vignette.rds |binary devtools-2.5.0/devtools/inst/WORDLIST | 345 ++-- devtools-2.5.0/devtools/inst/doc/dependencies.html | 720 +++------ devtools-2.5.0/devtools/inst/doc/dependencies.qmd |only devtools-2.5.0/devtools/inst/rstudio/addins.dcf | 48 devtools-2.5.0/devtools/man/as.package.Rd | 42 devtools-2.5.0/devtools/man/bash.Rd | 34 devtools-2.5.0/devtools/man/build.Rd | 252 +-- devtools-2.5.0/devtools/man/build_manual.Rd | 42 devtools-2.5.0/devtools/man/build_readme.Rd |only devtools-2.5.0/devtools/man/build_rmd.Rd | 64 devtools-2.5.0/devtools/man/build_site.Rd | 36 devtools-2.5.0/devtools/man/build_vignettes.Rd | 144 - 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Title: Bayesian Averaging for Dynamic Panels
Description: Implements Bayesian model averaging for dynamic panels with weakly
exogenous regressors as described in the paper by
Moral-Benito (2013, <doi:10.1080/07350015.2013.818003>).
The package provides functions to estimate dynamic panel data models
and analyze the results of the estimation.
Author: Krzysztof Beck [aut],
Piotr Cukier [aut],
Marcin Dubel [aut, cre],
Mariusz Szczepanczyk [aut],
Mateusz Wyszynski [aut]
Maintainer: Marcin Dubel <marcindubel@gmail.com>
Diff between badp versions 0.4.0 dated 2026-03-11 and 0.4.0.1 dated 2026-03-14
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- README.md | 6 +++--- src/Makevars | 1 + src/Makevars.win | 1 + tests/testthat/test-model_space.R | 2 +- 6 files changed, 17 insertions(+), 15 deletions(-)
Title: Comprehensive ARDL: Panel, Bootstrap and Fourier Methods
Description: A unified framework for Autoregressive Distributed Lag (ARDL) modeling
and cointegration analysis. Implements Panel ARDL with Pooled Mean Group (PMG),
Mean Group (MG), and Dynamic Fixed Effects (DFE) estimators following
Pesaran, Shin & Smith (1999) <doi:10.1002/jae.616>.
Provides bootstrap-based bounds testing per Pesaran, Shin & Smith (2001)
<doi:10.1002/jae.616>. Includes Quantile Nonlinear ARDL (QNARDL) combining
distributional and asymmetric effects based on Shin, Yu & Greenwood-Nimmo (2014)
<doi:10.1007/978-1-4899-8008-3_9>, and Fourier ARDL for modeling smooth
structural breaks following Enders & Lee (2012) <doi:10.1016/j.econlet.2012.05.019>.
Features include Augmented ARDL (AARDL) with deferred t and F tests,
Multiple-Threshold NARDL for complex asymmetries, Rolling/Recursive ARDL
for time-varying relationships, and Panel NARDL for nonlinear panel cointegration.
All methods include comprehensive diagnostics, publication-ready outputs,
an [...truncated...]
Author: Muhammad Abdullah Alkhalaf [aut, cre] ,
Merwan Roudane [ctb]
Maintainer: Muhammad Abdullah Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between ardlverse versions 1.1.2 dated 2026-03-11 and 1.1.3 dated 2026-03-14
DESCRIPTION | 11 ++++------ MD5 | 46 ++++++++++++++++++++++----------------------- R/augmented_ardl.R | 10 ++++----- R/bootstrap_ardl.R | 4 +-- R/fourier_ardl.R | 2 - R/mtnardl.R | 20 +++++++++++++------ R/panel_ardl.R | 2 - R/panel_nardl.R | 10 ++++----- R/qnardl.R | 2 - R/rolling_ardl.R | 8 +++---- man/aardl.Rd | 10 ++++----- man/ardl_diagnostics.Rd | 2 - man/ardlverse-package.Rd | 2 - man/asymmetry_test.Rd | 2 - man/boot_ardl.Rd | 4 +-- man/dynamic_multipliers.Rd | 2 - man/fourier_ardl.Rd | 4 +-- man/fourier_bounds_test.Rd | 2 - man/hausman_test.Rd | 2 - man/mtnardl.Rd | 10 ++++----- man/panel_ardl.Rd | 4 +-- man/pnardl.Rd | 24 +++++++++++------------ man/qnardl.Rd | 4 +-- man/rardl.Rd | 8 +++---- 24 files changed, 101 insertions(+), 94 deletions(-)
Title: Spatio-Temporal DBSCAN Clustering
Description: Implements the ST-DBSCAN (spatio-temporal density-based spatial
clustering of applications with noise) clustering algorithm for detecting
spatially and temporally dense regions in point data, with a fast C++ backend
via 'Rcpp'. Birant and Kut (2007) <doi:10.1016/j.datak.2006.01.013>.
Author: Antoine Le Doeuff [aut, cre]
Maintainer: Antoine Le Doeuff <antoine.ldoeuff@gmail.com>
Diff between stdbscan versions 0.1.0 dated 2026-01-27 and 0.2.0 dated 2026-03-14
stdbscan-0.1.0/stdbscan/src/st_dbscan.cpp |only stdbscan-0.2.0/stdbscan/DESCRIPTION | 12 stdbscan-0.2.0/stdbscan/MD5 | 35 + stdbscan-0.2.0/stdbscan/NAMESPACE | 8 stdbscan-0.2.0/stdbscan/NEWS.md | 16 stdbscan-0.2.0/stdbscan/R/RcppExports.R | 8 stdbscan-0.2.0/stdbscan/R/predict.R |only stdbscan-0.2.0/stdbscan/R/stdbscan.R | 246 +++++++++--- stdbscan-0.2.0/stdbscan/R/utils.R |only stdbscan-0.2.0/stdbscan/README.md | 27 - stdbscan-0.2.0/stdbscan/inst/doc/stop-identification.R | 42 +- stdbscan-0.2.0/stdbscan/inst/doc/stop-identification.Rmd | 60 +-- stdbscan-0.2.0/stdbscan/inst/doc/stop-identification.html | 258 +++++-------- stdbscan-0.2.0/stdbscan/man/predict.stdbscan.Rd |only stdbscan-0.2.0/stdbscan/man/st_dbscan.Rd | 60 +-- stdbscan-0.2.0/stdbscan/man/st_dbscan_corepoint.Rd |only stdbscan-0.2.0/stdbscan/src/RcppExports.cpp | 31 + stdbscan-0.2.0/stdbscan/src/temporal_filter.cpp |only stdbscan-0.2.0/stdbscan/src/temporal_filter_pred.cpp |only stdbscan-0.2.0/stdbscan/tests/testthat/test-check_inputs.R |only stdbscan-0.2.0/stdbscan/tests/testthat/test-predict.R |only stdbscan-0.2.0/stdbscan/tests/testthat/test-st_dbscan.R | 210 +++------- stdbscan-0.2.0/stdbscan/vignettes/stop-identification.Rmd | 60 +-- 23 files changed, 612 insertions(+), 461 deletions(-)
Title: Superlatively Fast Fuzzy Joins
Description: Empowers users to fuzzily-merge data frames with millions or tens of millions of rows in minutes with low memory usage. The package uses the locality sensitive hashing algorithms developed by Datar, Immorlica, Indyk and Mirrokni (2004) <doi:10.1145/997817.997857>, and Broder (1998) <doi:10.1109/SEQUEN.1997.666900> to avoid having to compare every pair of records in each dataset, resulting in fuzzy-merges that finish in linear time.
Author: Beniamino Green [aut, cre, cph],
Etienne Bacher [ctb] ,
The authors of the dependency Rust crates [ctb, cph]
Maintainer: Beniamino Green <beniamino.green@yale.edu>
Diff between zoomerjoin versions 0.2.2 dated 2026-01-30 and 0.2.3 dated 2026-03-14
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- inst/doc/guided_tour.html | 18 +++++++++--------- inst/doc/matching_vectors.html | 2 +- src/rust/vendor.tar.xz |binary 5 files changed, 20 insertions(+), 20 deletions(-)
Title: Optimize and Compress Image Files with 'reSmush.it'
Description: Compress local and online images using the 'reSmush.it' API
service <https://resmush.it/>.
Author: Diego Hernangomez [aut, cre, cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between resmush versions 0.2.2 dated 2026-01-12 and 1.0.0 dated 2026-03-14
resmush-0.2.2/resmush/inst/doc/resmush.Rmd |only resmush-0.2.2/resmush/vignettes/resmush.Rmd |only resmush-1.0.0/resmush/DESCRIPTION | 12 resmush-1.0.0/resmush/MD5 | 77 resmush-1.0.0/resmush/NAMESPACE | 16 resmush-1.0.0/resmush/NEWS.md | 37 resmush-1.0.0/resmush/R/resmush-package.R | 14 resmush-1.0.0/resmush/R/resmush_clean_dir.R | 158 - resmush-1.0.0/resmush/R/resmush_dir.R | 221 - resmush-1.0.0/resmush/R/resmush_file.R | 574 ++--- resmush-1.0.0/resmush/R/resmush_url.R | 598 ++--- resmush-1.0.0/resmush/R/show_report.R | 230 +- resmush-1.0.0/resmush/R/sysdata.rda |binary resmush-1.0.0/resmush/R/utils.R | 231 +- resmush-1.0.0/resmush/README.md | 491 ++-- resmush-1.0.0/resmush/build/vignette.rds |binary resmush-1.0.0/resmush/inst/CITATION | 42 resmush-1.0.0/resmush/inst/REFERENCES.bib | 14 resmush-1.0.0/resmush/inst/WORDLIST | 49 resmush-1.0.0/resmush/inst/doc/resmush.html | 1130 ++++------ resmush-1.0.0/resmush/inst/doc/resmush.qmd |only resmush-1.0.0/resmush/inst/schemaorg.json | 90 resmush-1.0.0/resmush/man/resmush-package.Rd | 52 resmush-1.0.0/resmush/man/resmush_clean_dir.Rd | 127 - resmush-1.0.0/resmush/man/resmush_dir.Rd | 215 - resmush-1.0.0/resmush/man/resmush_file.Rd | 213 - resmush-1.0.0/resmush/man/resmush_url.Rd | 201 - resmush-1.0.0/resmush/man/roxygen/meta.R | 12 resmush-1.0.0/resmush/tests/testthat.R | 24 resmush-1.0.0/resmush/tests/testthat/_snaps/formats.md | 8 resmush-1.0.0/resmush/tests/testthat/_snaps/remush_url.md | 6 resmush-1.0.0/resmush/tests/testthat/_snaps/resmush_file.md | 8 resmush-1.0.0/resmush/tests/testthat/test-formats-local.R | 187 - resmush-1.0.0/resmush/tests/testthat/test-formats.R | 258 +- resmush-1.0.0/resmush/tests/testthat/test-remush_url.R | 938 ++++---- resmush-1.0.0/resmush/tests/testthat/test-resmuh_dir.R | 471 ++-- resmush-1.0.0/resmush/tests/testthat/test-resmush_clean_dir.R | 141 - resmush-1.0.0/resmush/tests/testthat/test-resmush_file.R | 831 +++---- resmush-1.0.0/resmush/tests/testthat/test-utils.R | 82 resmush-1.0.0/resmush/vignettes/REFERENCES.bib | 14 resmush-1.0.0/resmush/vignettes/jpg_example_compress.jpg |only resmush-1.0.0/resmush/vignettes/resmush.qmd |only 42 files changed, 3829 insertions(+), 3943 deletions(-)
Title: Parsing Glycan Structure Text Representations
Description: Provides functions to parse glycan structure text representations
into 'glyrepr' glycan structures. Currently, it supports StrucGP-style,
pGlyco-style, IUPAC-condensed, IUPAC-extended, IUPAC-short, WURCS,
Linear Code, and GlycoCT format. It also provides an automatic parser
to detect the format and parse the structure string.
Author: Bin Fu [aut, cre, cph]
Maintainer: Bin Fu <23110220018@m.fudan.edu.cn>
Diff between glyparse versions 0.5.6 dated 2026-02-24 and 0.5.7 dated 2026-03-14
DESCRIPTION | 6 MD5 | 36 +- NEWS.md | 6 R/auto-parse.R | 11 R/parse-glycoct.R | 429 ++++++++++++++++++----------- R/parse-iupac-extended.R | 21 + R/parse-linear-code.R | 10 R/parse-pglyco.R | 19 + R/parse-strucgp.R | 14 R/parse-wurcs.R | 53 ++- R/utils.R | 108 ------- man/parse_iupac_extended.Rd | 8 tests/testthat/test-auto-parse.R | 11 tests/testthat/test-na-support.R | 5 tests/testthat/test-parse-glycoct.R | 8 tests/testthat/test-parse-iupac-extended.R | 32 ++ tests/testthat/test-parse-linear-code.R | 6 tests/testthat/test-parse-wurcs.R | 12 tests/testthat/test-performance.R | 16 - 19 files changed, 495 insertions(+), 316 deletions(-)
Title: Access to the 'Geospatial Data Abstraction Library' ('GDAL')
Description: Provides low-level access to 'GDAL' functionality.
'GDAL' is the 'Geospatial Data Abstraction Library' a translator for raster and vector geospatial data formats
that presents a single raster abstract data model and single vector abstract data model to the calling application
for all supported formats <https://gdal.org/>. This package is focussed on providing exactly and only what GDAL does, to enable
developing further tools.
Author: Michael Sumner [aut, cre] ,
Simon Wotherspoon [ctb] ,
Mark Padgham [ctb] ),
Edzer Pebesma [ctb] ,
Roger Bivand [ctb] ,
Jim Hester [ctb, cph] ,
Timothy Keitt [ctb] ,
Jeroen Ooms [ctb] ,
Dale Maschette [ctb] ,
Joseph Stachelek [ctb],
Even Rouault [ctb] [...truncated...]
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between vapour versions 0.15.0 dated 2025-12-21 and 0.16.0 dated 2026-03-14
vapour-0.15.0/vapour/R/RcppExports.R |only vapour-0.15.0/vapour/inst/benchmarks |only vapour-0.15.0/vapour/inst/cmd |only vapour-0.15.0/vapour/inst/docker |only vapour-0.15.0/vapour/inst/include/gdalwarpmem |only vapour-0.15.0/vapour/inst/pbf |only vapour-0.15.0/vapour/inst/readwrite |only vapour-0.15.0/vapour/inst/shiny |only vapour-0.15.0/vapour/inst/stars |only vapour-0.15.0/vapour/inst/warpsandbox |only vapour-0.15.0/vapour/src/RcppExports.cpp |only vapour-0.16.0/vapour/DESCRIPTION | 12 vapour-0.16.0/vapour/MD5 | 96 vapour-0.16.0/vapour/NAMESPACE | 3 vapour-0.16.0/vapour/NEWS.md | 66 vapour-0.16.0/vapour/R/00_read_block.R | 22 vapour-0.16.0/vapour/R/00_warpgeneral.R | 24 vapour-0.16.0/vapour/R/cpp11.R |only vapour-0.16.0/vapour/R/raster-input.R | 2 vapour-0.16.0/vapour/R/vapour-gdal-library.R | 11 vapour-0.16.0/vapour/R/vapour-package.R | 3 vapour-0.16.0/vapour/R/vapour_input_attributes.R | 34 vapour-0.16.0/vapour/R/vapour_input_geometry.R | 27 vapour-0.16.0/vapour/R/vapour_vrt.R | 2 vapour-0.16.0/vapour/build/vignette.rds |binary vapour-0.16.0/vapour/inst/WORDLIST | 2 vapour-0.16.0/vapour/inst/doc/feature-access.html | 221 +- vapour-0.16.0/vapour/inst/doc/vapour.html | 841 +++---- vapour-0.16.0/vapour/inst/include/common/common_vapour.h | 14 vapour-0.16.0/vapour/inst/include/gdalapplib/gdalapplib.h | 143 - vapour-0.16.0/vapour/inst/include/gdalarrowstream/gdalvectorstream.h | 199 - vapour-0.16.0/vapour/inst/include/gdalgeometry/gdalgeometry.h | 848 ++----- vapour-0.16.0/vapour/inst/include/gdallibrary/CollectorList.h | 26 vapour-0.16.0/vapour/inst/include/gdallibrary/gdal_crs.h |only vapour-0.16.0/vapour/inst/include/gdallibrary/gdal_drivers.h |only vapour-0.16.0/vapour/inst/include/gdallibrary/gdal_field_alloc.h |only vapour-0.16.0/vapour/inst/include/gdallibrary/gdal_layer_utils.h |only vapour-0.16.0/vapour/inst/include/gdallibrary/gdallibrary.h | 999 --------- vapour-0.16.0/vapour/inst/include/gdalmiscutils/gdalmiscutils.h | 27 vapour-0.16.0/vapour/inst/include/gdalraster/gdalraster.h | 1079 ++++------ vapour-0.16.0/vapour/inst/include/gdalreadwrite/gdalreadwrite.h | 208 - vapour-0.16.0/vapour/inst/include/gdalwarpgeneral/gdalwarpgeneral.h | 259 -- vapour-0.16.0/vapour/man/vapour_read_geometry.Rd | 4 vapour-0.16.0/vapour/man/vapour_write_raster_block.Rd | 5 vapour-0.16.0/vapour/src/000-stream.cpp | 22 vapour-0.16.0/vapour/src/000-warpgeneral.cpp | 61 vapour-0.16.0/vapour/src/00_config.cpp | 22 vapour-0.16.0/vapour/src/00_gdal.cpp | 62 vapour-0.16.0/vapour/src/00_geometry.cpp | 265 +- vapour-0.16.0/vapour/src/00_raster.cpp | 92 vapour-0.16.0/vapour/src/00_raster_block_io.cpp | 229 -- vapour-0.16.0/vapour/src/00_utils.cpp | 9 vapour-0.16.0/vapour/src/00_vrt.cpp | 31 vapour-0.16.0/vapour/src/cpp11.cpp |only vapour-0.16.0/vapour/src/warp_file.cpp | 29 vapour-0.16.0/vapour/tests/testthat/test-raster_read_block.R | 4 56 files changed, 2141 insertions(+), 3862 deletions(-)
Title: Sure Independence Screening
Description: Variable selection techniques are essential tools for model
selection and estimation in high-dimensional statistical models. Through this
publicly available package, we provide a unified environment to carry out
variable selection using iterative sure independence screening (SIS) (Fan and Lv (2008)<doi:10.1111/j.1467-9868.2008.00674.x>) and all
of its variants in generalized linear models (Fan and Song (2009)<doi:10.1214/10-AOS798>) and the Cox proportional hazards
model (Fan, Feng and Wu (2010)<doi:10.1214/10-IMSCOLL606>).
Author: Yang Feng [aut, cre],
Jianqing Fan [aut],
Diego Franco Saldana [aut],
Yichao Wu [aut],
Richard Samworth [aut],
Arce Domingo Relloso [aut]
Maintainer: Yang Feng <yangfengstat@gmail.com>
Diff between SIS versions 0.8-8 dated 2020-01-27 and 1.5 dated 2026-03-14
SIS-0.8-8/SIS/data/leukemia.test.RData |only SIS-0.8-8/SIS/data/leukemia.train.RData |only SIS-0.8-8/SIS/data/prostate.test.RData |only SIS-0.8-8/SIS/data/prostate.train.RData |only SIS-1.5/SIS/DESCRIPTION | 42 +- SIS-1.5/SIS/MD5 | 58 ++- SIS-1.5/SIS/NAMESPACE | 12 SIS-1.5/SIS/R/RcppExports.R |only SIS-1.5/SIS/R/SIS.R | 576 +++++++++++++++++++------------- SIS-1.5/SIS/R/boot_sis.R |only SIS-1.5/SIS/R/coxnet_internal.R |only SIS-1.5/SIS/R/globals.R |only SIS-1.5/SIS/R/leukemia.test.R |only SIS-1.5/SIS/R/leukemia.train.R |only SIS-1.5/SIS/R/predict.SIS.R | 339 +++++++++--------- SIS-1.5/SIS/R/prostate.test.R |only SIS-1.5/SIS/R/prostate.train.R |only SIS-1.5/SIS/R/standardize.R | 50 +- SIS-1.5/SIS/R/subfuns.R | 382 +++++++++++---------- SIS-1.5/SIS/R/tune.fit.R | 304 +++++++++++----- SIS-1.5/SIS/build |only SIS-1.5/SIS/data/leukemia.test.rda |only SIS-1.5/SIS/data/leukemia.train.rda |only SIS-1.5/SIS/data/prostate.test.rda |only SIS-1.5/SIS/data/prostate.train.rda |only SIS-1.5/SIS/inst/CITATION | 2 SIS-1.5/SIS/inst/doc |only SIS-1.5/SIS/man/SIS-internal.Rd |only SIS-1.5/SIS/man/SIS.Rd | 174 ++++++--- SIS-1.5/SIS/man/boot_sis.Rd |only SIS-1.5/SIS/man/leukemia.test.Rd | 41 +- SIS-1.5/SIS/man/leukemia.train.Rd | 41 +- SIS-1.5/SIS/man/predict.SIS.Rd | 83 ++-- SIS-1.5/SIS/man/prostate.test.Rd | 41 +- SIS-1.5/SIS/man/prostate.train.Rd | 39 +- SIS-1.5/SIS/man/standardize.Rd | 30 - SIS-1.5/SIS/man/tune.fit.Rd | 44 +- SIS-1.5/SIS/src |only SIS-1.5/SIS/vignettes |only 39 files changed, 1331 insertions(+), 927 deletions(-)
Title: Using Needleman-Wunsch to Match Sample Names
Description: The Needleman-Wunsch global alignment algorithm can be
used to find approximate matches between sample names in different
data sets. See Wang et al. (2010) <doi:10.4137/CIN.S5613>.
Author: Kevin R. Coombes [aut, cre]
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between NameNeedle versions 1.2.8 dated 2025-04-08 and 1.2.10 dated 2026-03-14
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- build/vignette.rds |binary data/cellLineNames.RData |binary inst/doc/blastName.pdf |binary man/needles.Rd | 9 +++++++-- 6 files changed, 16 insertions(+), 11 deletions(-)
Title: A Macro Language for 'R' Programs
Description: A macro language for 'R' programs, which
provides a macro facility similar to 'SAS®'. This
package contains basic macro capabilities
like defining macro variables, executing conditional
logic, and defining macro functions.
Author: David Bosak [aut, cre],
Bill Huang [ctb],
Duong Tran [ctb]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between macro versions 0.1.5 dated 2025-11-26 and 0.1.6 dated 2026-03-14
DESCRIPTION | 6 MD5 | 26 ++- NEWS.md | 8 + R/symtable.R | 2 R/utilities.R | 229 ++++++++++++++++++--------------- README.md | 8 + tests/testthat/examples/log/test12.txt | 2 tests/testthat/examples/log/test13.txt | 2 tests/testthat/programs/test28.R |only tests/testthat/programs/test28_mod.R |only tests/testthat/programs/test29.R |only tests/testthat/programs/test29_mod.R |only tests/testthat/programs/test30.R |only tests/testthat/programs/test30_mod.R |only tests/testthat/programs/test31.R |only tests/testthat/programs/test31_mod.R |only tests/testthat/test-msource.R | 65 +++++++++ tests/testthat/test-utilities.R | 42 +++++- 18 files changed, 271 insertions(+), 119 deletions(-)
Title: Geometric Morphometric Analyses of 2D and 3D Landmark Data
Description: Read and manipulate landmark data, generate shape
variables via Procrustes analysis for points, curves and surfaces, perform
shape analyses, and provide graphical depictions of shapes and patterns of
shape variation.
Author: Dean Adams [aut, cre],
Michael Collyer [aut],
Antigoni Kaliontzopoulou [aut],
Erica Baken [aut]
Maintainer: Dean Adams <dcadams@iastate.edu>
Diff between geomorph versions 4.0.10 dated 2025-02-05 and 4.1.0 dated 2026-03-14
geomorph-4.0.10/geomorph/build |only geomorph-4.0.10/geomorph/inst/doc |only geomorph-4.0.10/geomorph/man/buildtemplate.Rd |only geomorph-4.0.10/geomorph/vignettes |only geomorph-4.1.0/geomorph/DESCRIPTION | 15 geomorph-4.1.0/geomorph/MD5 | 400 geomorph-4.1.0/geomorph/NAMESPACE | 20 geomorph-4.1.0/geomorph/NEWS.md | 17 geomorph-4.1.0/geomorph/R/arrayspecs.r | 188 geomorph-4.1.0/geomorph/R/bilat.symmetry.r | 732 - geomorph-4.1.0/geomorph/R/build.template.r | 129 geomorph-4.1.0/geomorph/R/combine.subsets.R | 576 - geomorph-4.1.0/geomorph/R/compare.CR.R | 320 geomorph-4.1.0/geomorph/R/compare.ZVrel.R | 150 geomorph-4.1.0/geomorph/R/compare.evol.rates.r | 360 geomorph-4.1.0/geomorph/R/compare.multi.evol.rates.r | 332 geomorph-4.1.0/geomorph/R/compare.physign.z.r | 232 geomorph-4.1.0/geomorph/R/compare.pls.r | 254 geomorph-4.1.0/geomorph/R/coords.subset.r | 80 geomorph-4.1.0/geomorph/R/define.links.r | 36 geomorph-4.1.0/geomorph/R/define.modules.r | 152 geomorph-4.1.0/geomorph/R/define.sliders.r | 298 geomorph-4.1.0/geomorph/R/deprecated.defunct.r | 32 geomorph-4.1.0/geomorph/R/digit.curves.r | 124 geomorph-4.1.0/geomorph/R/digit.fixed.r | 134 geomorph-4.1.0/geomorph/R/digitsurface.r | 129 geomorph-4.1.0/geomorph/R/editTemplate.r | 61 geomorph-4.1.0/geomorph/R/extended.pgls.r | 440 - geomorph-4.1.0/geomorph/R/findMeanSpec.r | 54 geomorph-4.1.0/geomorph/R/geomorph.support.code.r | 5212 ++++++------- geomorph-4.1.0/geomorph/R/geomorph.utils.r | 228 geomorph-4.1.0/geomorph/R/gm.measurement.error.R | 390 geomorph-4.1.0/geomorph/R/gm.prcomp.R | 563 - geomorph-4.1.0/geomorph/R/gpagen.r | 710 - geomorph-4.1.0/geomorph/R/gridPar.r | 2 geomorph-4.1.0/geomorph/R/interlmkdist.r | 162 geomorph-4.1.0/geomorph/R/make_ggplot.r | 294 geomorph-4.1.0/geomorph/R/modularity.test.r | 356 geomorph-4.1.0/geomorph/R/morphol.disparity.r | 692 - geomorph-4.1.0/geomorph/R/phylo.modularity.r | 290 geomorph-4.1.0/geomorph/R/physignal.eigen.R | 4 geomorph-4.1.0/geomorph/R/physignal.r | 362 geomorph-4.1.0/geomorph/R/physignal.z.r | 756 - geomorph-4.1.0/geomorph/R/picknplot.shape.r | 569 - geomorph-4.1.0/geomorph/R/plotAllSpecimens.r | 211 geomorph-4.1.0/geomorph/R/plotAllometry.r | 552 - geomorph-4.1.0/geomorph/R/plotOutliers.r | 237 geomorph-4.1.0/geomorph/R/plotRefToTarget.r | 747 - geomorph-4.1.0/geomorph/R/plotspec.r | 163 geomorph-4.1.0/geomorph/R/procD.lm.r | 840 +- geomorph-4.1.0/geomorph/R/procD.pgls.r | 350 geomorph-4.1.0/geomorph/R/read.morphologika.r | 210 geomorph-4.1.0/geomorph/R/read.ply.r | 180 geomorph-4.1.0/geomorph/R/readland.fcsv.r | 62 geomorph-4.1.0/geomorph/R/readland.nts.r | 198 geomorph-4.1.0/geomorph/R/readland.shapes.r | 156 geomorph-4.1.0/geomorph/R/readland.tps.r | 146 geomorph-4.1.0/geomorph/R/readmulti.nts.r | 100 geomorph-4.1.0/geomorph/R/readmulti.tps.R | 130 geomorph-4.1.0/geomorph/R/rotate.coords.R | 242 geomorph-4.1.0/geomorph/R/shape.predictor.r | 447 - geomorph-4.1.0/geomorph/R/shapeHulls.r | 188 geomorph-4.1.0/geomorph/R/shared.support.code.R | 1299 +-- geomorph-4.1.0/geomorph/R/two.b.pls.r | 402 - geomorph-4.1.0/geomorph/R/two.d.array.r | 78 geomorph-4.1.0/geomorph/R/warpRefMesh.r | 142 geomorph-4.1.0/geomorph/R/writeland.tps.r | 76 geomorph-4.1.0/geomorph/README.md | 2 geomorph-4.1.0/geomorph/inst/CITATION | 4 geomorph-4.1.0/geomorph/man/arrayspecs.Rd | 136 geomorph-4.1.0/geomorph/man/bilat.symmetry.Rd | 482 - geomorph-4.1.0/geomorph/man/build.template.Rd |only geomorph-4.1.0/geomorph/man/combine.subsets.Rd | 340 geomorph-4.1.0/geomorph/man/compare.CR.Rd | 198 geomorph-4.1.0/geomorph/man/compare.ZVrel.Rd | 116 geomorph-4.1.0/geomorph/man/compare.evol.rates.Rd | 212 geomorph-4.1.0/geomorph/man/compare.multi.evol.rates.Rd | 240 geomorph-4.1.0/geomorph/man/compare.physignal.z.Rd | 132 geomorph-4.1.0/geomorph/man/compare.pls.Rd | 196 geomorph-4.1.0/geomorph/man/coords.subset.Rd | 70 geomorph-4.1.0/geomorph/man/define.links.Rd | 100 geomorph-4.1.0/geomorph/man/define.modules.Rd | 95 geomorph-4.1.0/geomorph/man/define.sliders.Rd | 199 geomorph-4.1.0/geomorph/man/digit.curves.Rd | 114 geomorph-4.1.0/geomorph/man/digit.fixed.Rd | 89 geomorph-4.1.0/geomorph/man/digitize2d.Rd | 174 geomorph-4.1.0/geomorph/man/digitsurface.Rd | 104 geomorph-4.1.0/geomorph/man/editTemplate.Rd | 62 geomorph-4.1.0/geomorph/man/estimate.missing.Rd | 164 geomorph-4.1.0/geomorph/man/extended.pgls.Rd | 390 geomorph-4.1.0/geomorph/man/findMeanSpec.Rd | 64 geomorph-4.1.0/geomorph/man/fixed.angle.Rd | 168 geomorph-4.1.0/geomorph/man/geomorph-package.Rd | 40 geomorph-4.1.0/geomorph/man/geomorph.data.frame.Rd | 82 geomorph-4.1.0/geomorph/man/globalIntegration.Rd | 92 geomorph-4.1.0/geomorph/man/gm.measurement.error.Rd | 362 geomorph-4.1.0/geomorph/man/gm.prcomp.Rd | 414 - geomorph-4.1.0/geomorph/man/gpagen.Rd | 506 - geomorph-4.1.0/geomorph/man/gridPar.Rd | 252 geomorph-4.1.0/geomorph/man/hummingbirds.Rd | 36 geomorph-4.1.0/geomorph/man/integration.Vrel.Rd | 108 geomorph-4.1.0/geomorph/man/integration.test.Rd | 354 geomorph-4.1.0/geomorph/man/interlmkdist.Rd | 98 geomorph-4.1.0/geomorph/man/larvalMorph.Rd | 46 geomorph-4.1.0/geomorph/man/lizards.Rd | 46 geomorph-4.1.0/geomorph/man/make_ggplot.Rd | 146 geomorph-4.1.0/geomorph/man/modularity.test.Rd | 222 geomorph-4.1.0/geomorph/man/morphol.disparity.Rd | 444 - geomorph-4.1.0/geomorph/man/mosquito.Rd | 26 geomorph-4.1.0/geomorph/man/mshape.Rd | 82 geomorph-4.1.0/geomorph/man/na.omit.geomorph.data.frame.Rd | 60 geomorph-4.1.0/geomorph/man/phylo.integration.Rd | 342 geomorph-4.1.0/geomorph/man/phylo.modularity.Rd | 212 geomorph-4.1.0/geomorph/man/physignal.Rd | 206 geomorph-4.1.0/geomorph/man/physignal.eigen.Rd | 284 geomorph-4.1.0/geomorph/man/physignal.z.Rd | 380 geomorph-4.1.0/geomorph/man/picknplot.shape.Rd | 187 geomorph-4.1.0/geomorph/man/plethShapeFood.Rd | 38 geomorph-4.1.0/geomorph/man/plethodon.Rd | 40 geomorph-4.1.0/geomorph/man/plethspecies.Rd | 36 geomorph-4.1.0/geomorph/man/plot.CR.Rd | 42 geomorph-4.1.0/geomorph/man/plot.CR.phylo.Rd | 42 geomorph-4.1.0/geomorph/man/plot.bilat.symmetry.Rd | 50 geomorph-4.1.0/geomorph/man/plot.evolrate.Rd | 42 geomorph-4.1.0/geomorph/man/plot.gm.prcomp.Rd | 120 geomorph-4.1.0/geomorph/man/plot.gpagen.Rd | 42 geomorph-4.1.0/geomorph/man/plot.mshape.Rd | 52 geomorph-4.1.0/geomorph/man/plot.physignal.Rd | 42 geomorph-4.1.0/geomorph/man/plot.physignal.eigen.Rd | 52 geomorph-4.1.0/geomorph/man/plot.physignal.z.Rd | 42 geomorph-4.1.0/geomorph/man/plot.pls.Rd | 58 geomorph-4.1.0/geomorph/man/plot.procD.lm.Rd | 104 geomorph-4.1.0/geomorph/man/plotAllSpecimens.Rd | 99 geomorph-4.1.0/geomorph/man/plotAllometry.Rd | 408 - geomorph-4.1.0/geomorph/man/plotOutliers.Rd | 141 geomorph-4.1.0/geomorph/man/plotRefToTarget.Rd | 262 geomorph-4.1.0/geomorph/man/plotspec.Rd | 143 geomorph-4.1.0/geomorph/man/print.CR.Rd | 40 geomorph-4.1.0/geomorph/man/print.CR.phylo.Rd | 40 geomorph-4.1.0/geomorph/man/print.bilat.symmetry.Rd | 40 geomorph-4.1.0/geomorph/man/print.combined.set.Rd | 40 geomorph-4.1.0/geomorph/man/print.compare.CR.Rd | 40 geomorph-4.1.0/geomorph/man/print.compare.ZVrel.Rd | 40 geomorph-4.1.0/geomorph/man/print.compare.physignal.z.Rd | 40 geomorph-4.1.0/geomorph/man/print.compare.pls.Rd | 40 geomorph-4.1.0/geomorph/man/print.evolrate.Rd | 40 geomorph-4.1.0/geomorph/man/print.evolrate1.Rd | 40 geomorph-4.1.0/geomorph/man/print.geomorphShapes.Rd | 40 geomorph-4.1.0/geomorph/man/print.gm.prcomp.Rd | 40 geomorph-4.1.0/geomorph/man/print.gpagen.Rd | 40 geomorph-4.1.0/geomorph/man/print.morphol.disparity.Rd | 40 geomorph-4.1.0/geomorph/man/print.physignal.Rd | 40 geomorph-4.1.0/geomorph/man/print.physignal.eigen.Rd | 40 geomorph-4.1.0/geomorph/man/print.physignal.z.Rd | 40 geomorph-4.1.0/geomorph/man/print.pls.Rd | 40 geomorph-4.1.0/geomorph/man/print.procD.lm.Rd | 40 geomorph-4.1.0/geomorph/man/procD.lm.Rd | 680 - geomorph-4.1.0/geomorph/man/procD.pgls.Rd | 354 geomorph-4.1.0/geomorph/man/pupfish.Rd | 44 geomorph-4.1.0/geomorph/man/pupfish.ws.Rd | 50 geomorph-4.1.0/geomorph/man/ratland.Rd | 34 geomorph-4.1.0/geomorph/man/read.morphologika.Rd | 94 geomorph-4.1.0/geomorph/man/read.ply.Rd | 94 geomorph-4.1.0/geomorph/man/readland.fcsv.Rd | 60 geomorph-4.1.0/geomorph/man/readland.nts.Rd | 110 geomorph-4.1.0/geomorph/man/readland.shapes.Rd | 178 geomorph-4.1.0/geomorph/man/readland.tps.Rd | 142 geomorph-4.1.0/geomorph/man/readmulti.nts.Rd | 70 geomorph-4.1.0/geomorph/man/readmulti.tps.Rd | 60 geomorph-4.1.0/geomorph/man/rotate.coords.Rd | 130 geomorph-4.1.0/geomorph/man/scallopPLY.Rd | 34 geomorph-4.1.0/geomorph/man/scallops.Rd | 34 geomorph-4.1.0/geomorph/man/shape.predictor.Rd | 353 geomorph-4.1.0/geomorph/man/shapeHulls.Rd | 172 geomorph-4.1.0/geomorph/man/summary.CR.Rd | 40 geomorph-4.1.0/geomorph/man/summary.CR.phylo.Rd | 40 geomorph-4.1.0/geomorph/man/summary.bilat.symmetry.Rd | 40 geomorph-4.1.0/geomorph/man/summary.combined.set.Rd | 40 geomorph-4.1.0/geomorph/man/summary.compare.CR.Rd | 40 geomorph-4.1.0/geomorph/man/summary.compare.ZVrel.Rd | 40 geomorph-4.1.0/geomorph/man/summary.compare.physignal.z.Rd | 40 geomorph-4.1.0/geomorph/man/summary.compare.pls.Rd | 40 geomorph-4.1.0/geomorph/man/summary.evolrate.Rd | 40 geomorph-4.1.0/geomorph/man/summary.evolrate1.Rd | 40 geomorph-4.1.0/geomorph/man/summary.geomorphShapes.Rd | 40 geomorph-4.1.0/geomorph/man/summary.gm.prcomp.Rd | 40 geomorph-4.1.0/geomorph/man/summary.gpagen.Rd | 40 geomorph-4.1.0/geomorph/man/summary.morphol.disparity.Rd | 40 geomorph-4.1.0/geomorph/man/summary.physignal.Rd | 40 geomorph-4.1.0/geomorph/man/summary.physignal.eigen.Rd | 40 geomorph-4.1.0/geomorph/man/summary.physignal.z.Rd | 40 geomorph-4.1.0/geomorph/man/summary.pls.Rd | 40 geomorph-4.1.0/geomorph/man/summary.procD.lm.Rd | 40 geomorph-4.1.0/geomorph/man/two.b.pls.Rd | 268 geomorph-4.1.0/geomorph/man/two.d.array.Rd | 88 geomorph-4.1.0/geomorph/man/warpRefMesh.Rd | 125 geomorph-4.1.0/geomorph/man/warpRefOutline.Rd | 106 geomorph-4.1.0/geomorph/man/writeland.tps.Rd | 56 geomorph-4.1.0/geomorph/tests/testthat.R | 8 geomorph-4.1.0/geomorph/tests/testthat/test-geomorph.R | 2064 ++--- 200 files changed, 20014 insertions(+), 20658 deletions(-)
Title: Unified Parallel and Distributed Processing in R for Everyone
Description: The purpose of this package is to provide a lightweight and
unified Future API for sequential and parallel processing of R
expression via futures. The simplest way to evaluate an expression
in parallel is to use `x %<-% { expression }` with `plan(multisession)`.
This package implements sequential, multicore, multisession, and
cluster futures. With these, R expressions can be evaluated on the
local machine, in parallel a set of local machines, or distributed
on a mix of local and remote machines.
Extensions to this package implement additional backends for
processing futures via compute cluster schedulers, etc.
Because of its unified API, there is no need to modify any code in order
switch from sequential on the local machine to, say, distributed
processing on a remote compute cluster.
Another strength of this package is that global variables and functions
are automatically identified and exported as needed, making it
straightforward to tweak existing code to make use of futures.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future versions 1.69.0 dated 2026-01-16 and 1.70.0 dated 2026-03-14
DESCRIPTION | 8 MD5 | 146 ++-- NEWS.md | 171 +++-- R/000.re-exports.R | 16 R/backend_api-11.ClusterFutureBackend-class.R | 383 +++++++------ R/backend_api-11.MulticoreFutureBackend-class.R | 15 R/backend_api-ConstantFuture-class.R | 4 R/backend_api-Future-class.R | 35 - R/backend_api-FutureRegistry.R | 4 R/backend_api-evalFuture.R | 2 R/core_api-cancel.R | 4 R/core_api-future.R | 24 R/core_api-reset.R | 2 R/core_api-resolved.R | 2 R/core_api-value.R | 15 R/delayed_api-futureAssign.R | 18 R/delayed_api-futureOf.R | 10 R/protected_api-globals.R | 22 R/protected_api-journal.R | 5 R/protected_api-resolve.R | 10 R/protected_api-result.R | 1 R/utils-options.R | 2 R/utils-uuid.R | 2 R/utils_api-makeClusterFuture.R | 19 R/utils_api-nbrOfWorkers.R | 6 R/utils_api-plan.R | 28 build/vignette.rds |binary inst/WORDLIST | 9 inst/doc/future-1-overview.html | 120 ++-- inst/doc/future-1-overview.md.rsp | 120 ++-- inst/doc/future-2-output.html | 8 inst/doc/future-2-output.md.rsp | 8 inst/doc/future-2b-backend.html | 2 inst/doc/future-2b-backend.md.rsp | 2 inst/doc/future-3-topologies.html | 16 inst/doc/future-3-topologies.md.rsp | 16 inst/doc/future-4-issues.html | 34 - inst/doc/future-4-issues.md.rsp | 34 - inst/doc/future-4-non-exportable-objects.html | 46 - inst/doc/future-4-non-exportable-objects.md.rsp | 46 - inst/doc/future-5-startup.html | 2 inst/doc/future-5-startup.md.rsp | 2 inst/doc/future-6-future-api-backend-specification.html | 20 inst/doc/future-6-future-api-backend-specification.md.rsp | 20 inst/doc/future-7-for-package-developers.html | 20 inst/doc/future-7-for-package-developers.md.rsp | 20 inst/doc/future-8-how-future-is-validated.html | 12 inst/doc/future-8-how-future-is-validated.md.rsp | 12 inst/testme/test-globals,resolve.R | 10 inst/vignettes-static/future-1-overview.md.rsp.rsp | 58 + man/Future-class.Rd | 22 man/MultiprocessFuture-class.Rd | 2 man/UniprocessFuture-class.Rd | 2 man/cancel.Rd | 4 man/future.Rd | 32 - man/futureAssign.Rd | 32 - man/futureOf.Rd | 6 man/makeClusterFuture.Rd | 21 man/multicore.Rd | 16 man/plan.Rd | 26 man/reset.Rd | 2 man/resetWorkers.Rd | 2 man/resolved.Rd | 2 man/value.Rd | 8 vignettes/future-1-overview.md.rsp | 120 ++-- vignettes/future-2-output.md.rsp | 8 vignettes/future-2b-backend.md.rsp | 2 vignettes/future-3-topologies.md.rsp | 16 vignettes/future-4-issues.md.rsp | 34 - vignettes/future-4-non-exportable-objects.md.rsp | 46 - vignettes/future-5-startup.md.rsp | 2 vignettes/future-6-future-api-backend-specification.md.rsp | 20 vignettes/future-7-for-package-developers.md.rsp | 20 vignettes/future-8-how-future-is-validated.md.rsp | 12 74 files changed, 1116 insertions(+), 932 deletions(-)