Title: Graphics in the Context of Analyzing High-Throughput Data
Description: Additional options for making graphics in the context of analyzing high-throughput data are available here.
This includes automatic segmenting of the current device (eg window) to accommodate multiple new plots,
automatic checking for optimal location of legends in plots, small histograms to insert as legends,
histograms re-transforming axis labels to linear when plotting log2-transformed data,
a violin-plot <doi:10.1080/00031305.1998.10480559> function for a wide variety of input-formats,
principal components analysis (PCA) <doi:10.1080/14786440109462720> with bag-plots <doi:10.1080/00031305.1999.10474494> to highlight and compare the center areas for groups of samples,
generic MA-plots (differential- versus average-value plots) <doi:10.1093/nar/30.4.e15>,
staggered count plots and generation of mouse-over interactive html pages.
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@gmail.com>
Diff between wrGraph versions 1.3.12 dated 2026-03-09 and 1.3.13 dated 2026-03-16
DESCRIPTION | 8 - MD5 | 10 - R/MAplotW.R | 17 +-- R/VolcanoPlotW.R | 232 +++++++++++++++++++++++++---------------- inst/doc/wrGraphVignette1.html | 139 +++++++++++------------- man/VolcanoPlotW.Rd | 14 ++ 6 files changed, 240 insertions(+), 180 deletions(-)
Title: Query the 'NHS TRUD API'
Description: Provides a convenient R interface to the 'National Health Service
NHS Technology Reference Update Distribution (TRUD) API', allowing users
to list available releases for their subscribed items, retrieve metadata,
and download release files. For more information on the API, see
<https://isd.digital.nhs.uk/trud/users/guest/filters/0/api>.
Author: Alasdair Warwick [aut, cre, cph] ,
Robert Luben [aut] ,
Abraham Olvera-Barrios [aut] ,
Chuin Ying Ung [aut] ,
Jon Clayden [rev] ,
Alexandros Kouretsis [rev]
Maintainer: Alasdair Warwick <alasdair.warwick.19@ucl.ac.uk>
Diff between trud versions 0.2.0 dated 2025-08-18 and 0.2.1 dated 2026-03-16
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 7 +++++++ R/download_item.R | 3 ++- README.md | 32 ++++++++++++++++---------------- inst/CITATION | 28 ++++++++++++++++++++++++++++ inst/doc/trud.html | 5 +++-- inst/paper/paper.md | 8 ++++---- 8 files changed, 70 insertions(+), 33 deletions(-)
Title: Applications of the Qn Estimator to Time Series (Univariate and
Multivariate)
Description: Time Series Qn is a package with applications of the Qn estimator of Rousseeuw and Croux (1993) <doi:10.1080/01621459.1993.10476408> to univariate and multivariate Time Series in time and frequency domains. More specifically, the robust estimation of autocorrelation or autocovariance matrix functions from Ma and Genton (2000, 2001) <doi:10.1111/1467-9892.00203>, <doi:10.1006/jmva.2000.1942> and Cotta (2017) <doi:10.13140/RG.2.2.14092.10883> are provided. The robust pseudo-periodogram of Molinares et. al. (2009) <doi:10.1016/j.jspi.2008.12.014> is also given. This packages also provides the M-estimator of the long-memory parameter d based on the robustification of the GPH estimator proposed by Reisen et al. (2017) <doi:10.1016/j.jspi.2017.02.008>.
Author: Higor Cotta [aut, cre],
Valderio Reisen [aut],
Pascal Bondon [aut],
Celine Levy-Leduc [aut]
Maintainer: Higor Cotta <cotta.higor@gmail.com>
Diff between tsqn versions 1.0.0 dated 2017-03-29 and 1.2.0 dated 2026-03-16
DESCRIPTION | 36 ++++++++++-- MD5 | 38 +++++++++---- NEWS.md |only R/cor_mat_qn.R | 32 +++++++++-- R/cor_qn.R | 35 +++++------- R/cov_mat_qn.R | 35 +++++++++--- R/cov_qn.R | 35 +++++------- R/gph.r | 46 +++++++--------- R/per_rob_M.r | 33 ++++++----- R/per_rob_Qn.r | 46 +++++++++------- R/robacf.R | 151 ++++++++++++++++++++++++++++------------------------- build |only data |only inst |only man/plot.robacf.Rd | 23 +++++--- man/pm10.Rd |only man/robacf.Rd | 11 +++ man/tsqn.Rd | 9 --- tests |only vignettes |only 20 files changed, 315 insertions(+), 215 deletions(-)
Title: Tidy Quantitative Financial Analysis
Description: Bringing business and financial analysis to the 'tidyverse'. The 'tidyquant'
package provides a convenient wrapper to various 'xts', 'zoo', 'quantmod', 'TTR'
and 'PerformanceAnalytics' package
functions and returns the objects in the tidy 'tibble' format. The main
advantage is being able to use quantitative functions with the 'tidyverse'
functions including 'purrr', 'dplyr', 'tidyr', 'ggplot2', 'lubridate', etc. See
the 'tidyquant' website for more information, documentation and examples.
Author: Matt Dancho [aut, cre],
Davis Vaughan [aut]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between tidyquant versions 1.0.11 dated 2025-02-13 and 1.0.12 dated 2026-03-16
DESCRIPTION | 22 MD5 | 56 - NEWS.md | 9 R/api-quandl.R | 385 ++++++++++- R/ggplot-geom_bbands.R | 4 R/ggplot-geom_ma.R | 4 R/tq_get.R | 22 R/tq_mutate.R | 12 README.md | 14 build/vignette.rds |binary inst/doc/TQ06-excel-in-r.html | 2 man/coord_x_date.Rd | 6 man/excel_if_functions.Rd | 2 man/excel_stat_mutation_functions.Rd | 2 man/excel_stat_summary_functions.Rd | 2 man/geom_bbands.Rd | 10 man/geom_chart.Rd | 8 man/geom_ma.Rd | 10 man/quandl_api_key.Rd | 16 man/quandl_search.Rd | 19 man/tiingo_api_key.Rd | 2 man/tq_get.Rd | 12 man/tq_mutate.Rd | 12 tests/testthat/test-tq_get_economic_data.R | 34 vignettes/temp/TQ00-introduction-to-tidyquant.html |only vignettes/temp/TQ01-core-functions-in-tidyquant.Rmd | 53 - vignettes/temp/TQ01-core-functions-in-tidyquant.html |only vignettes/temp/TQ02-quant-integrations-in-tidyquant.html |only vignettes/temp/TQ03-scaling-and-modeling-with-tidyquant.html |only vignettes/temp/TQ04-charting-with-tidyquant.html |only vignettes/temp/TQ05-performance-analysis-with-tidyquant.Rmd | 1 vignettes/temp/TQ05-performance-analysis-with-tidyquant.html |only 32 files changed, 560 insertions(+), 159 deletions(-)
Title: A Toolkit for Connecting R and Large Language Models
Description: A complete toolkit for connecting 'R' environments with Large
Language Models (LLMs). Provides utilities for describing 'R' objects,
package documentation, and workspace state in plain text formats
optimized for LLM consumption. Supports multiple workflows:
interactive copy-paste to external chat interfaces, programmatic tool
registration with 'ellmer' chat clients, batteries-included chat
applications via 'shinychat', and exposure to external coding agents
through the Model Context Protocol. Project configuration files enable
stable, repeatable conversations with project-specific context and
preferred LLM settings.
Author: Garrick Aden-Buie [aut, cre] ,
Simon Couch [aut] ,
Joe Cheng [aut],
Posit Software, PBC [cph, fnd],
Google [cph] ,
Microsoft [cph] ,
Jamie Perkins [cph]
Maintainer: Garrick Aden-Buie <garrick@adenbuie.com>
Diff between btw versions 1.1.0 dated 2025-12-22 and 1.2.0 dated 2026-03-16
btw-1.1.0/btw/R/tool-files-code-search.R |only btw-1.1.0/btw/R/tool-files.R |only btw-1.1.0/btw/R/tool-search-packages.R |only btw-1.1.0/btw/R/tool-session-info.R |only btw-1.1.0/btw/man/btw_tool_files_code_search.Rd |only btw-1.1.0/btw/man/btw_tool_files_list_files.Rd |only btw-1.1.0/btw/man/btw_tool_files_read_text_file.Rd |only btw-1.1.0/btw/man/btw_tool_files_write_text_file.Rd |only btw-1.1.0/btw/man/btw_tool_search_package_info.Rd |only btw-1.1.0/btw/man/btw_tool_search_packages.Rd |only btw-1.1.0/btw/man/btw_tool_session_check_package_installed.Rd |only btw-1.1.0/btw/man/btw_tool_session_package_info.Rd |only btw-1.1.0/btw/man/btw_tool_session_platform_info.Rd |only btw-1.1.0/btw/tests/testthat/_snaps/tool-files.md |only btw-1.1.0/btw/tests/testthat/_snaps/tool-search-packages.md |only btw-1.1.0/btw/tests/testthat/_snaps/tool-session-info.md |only btw-1.1.0/btw/tests/testthat/test-tool-files.R |only btw-1.1.0/btw/tests/testthat/test-tool-search-packages.R |only btw-1.1.0/btw/tests/testthat/test-tool-session-info.R |only btw-1.2.0/btw/DESCRIPTION | 54 - btw-1.2.0/btw/MD5 | 185 ++-- btw-1.2.0/btw/NAMESPACE | 21 btw-1.2.0/btw/NEWS.md | 130 ++ btw-1.2.0/btw/R/aaa-tools.R | 18 btw-1.2.0/btw/R/btw-package.R | 1 btw-1.2.0/btw/R/btw_client.R | 345 ++++++- btw-1.2.0/btw/R/btw_client_app.R | 335 ++++--- btw-1.2.0/btw/R/btw_task.R |only btw-1.2.0/btw/R/btw_this.R | 16 btw-1.2.0/btw/R/cli.R |only btw-1.2.0/btw/R/clipboard.R | 4 btw-1.2.0/btw/R/deprecated.R |only btw-1.2.0/btw/R/mcp.R | 73 + btw-1.2.0/btw/R/sysdata.rda |only btw-1.2.0/btw/R/task_create_btw_md.R | 8 btw-1.2.0/btw/R/task_create_readme.R | 8 btw-1.2.0/btw/R/task_create_skill.R |only btw-1.2.0/btw/R/tool-agent-custom.R |only btw-1.2.0/btw/R/tool-agent-subagent.R |only btw-1.2.0/btw/R/tool-cran.R |only btw-1.2.0/btw/R/tool-env-df.R | 2 btw-1.2.0/btw/R/tool-files-edit.R |only btw-1.2.0/btw/R/tool-files-list.R |only btw-1.2.0/btw/R/tool-files-read.R |only btw-1.2.0/btw/R/tool-files-replace.R |only btw-1.2.0/btw/R/tool-files-search.R |only btw-1.2.0/btw/R/tool-files-write.R |only btw-1.2.0/btw/R/tool-git.R | 63 - btw-1.2.0/btw/R/tool-github.R | 6 btw-1.2.0/btw/R/tool-pkg-devtools.R | 117 ++ btw-1.2.0/btw/R/tool-run.R | 26 btw-1.2.0/btw/R/tool-session-package-installed.R | 23 btw-1.2.0/btw/R/tool-sessioninfo.R |only btw-1.2.0/btw/R/tool-skills.R |only btw-1.2.0/btw/R/tools.R | 119 ++ btw-1.2.0/btw/R/utils-ellmer.R | 128 ++ btw-1.2.0/btw/R/utils-ide.R | 4 btw-1.2.0/btw/R/utils.R | 105 ++ btw-1.2.0/btw/R/zzz.R | 4 btw-1.2.0/btw/exec |only btw-1.2.0/btw/inst/cli-skill |only btw-1.2.0/btw/inst/icons/category.svg |only btw-1.2.0/btw/inst/icons/error.svg |only btw-1.2.0/btw/inst/icons/pallet.svg |only btw-1.2.0/btw/inst/icons/robot.svg |only btw-1.2.0/btw/inst/js/app/btw_app.css | 12 btw-1.2.0/btw/inst/prompts/btw-subagent.md |only btw-1.2.0/btw/inst/prompts/skills.md |only btw-1.2.0/btw/inst/skills |only btw-1.2.0/btw/man/btw_agent_tool.Rd |only btw-1.2.0/btw/man/btw_client.Rd | 39 btw-1.2.0/btw/man/btw_skill_install_github.Rd |only btw-1.2.0/btw/man/btw_skill_install_package.Rd |only btw-1.2.0/btw/man/btw_task.Rd |only btw-1.2.0/btw/man/btw_task_create_btw_md.Rd | 15 btw-1.2.0/btw/man/btw_task_create_readme.Rd | 15 btw-1.2.0/btw/man/btw_task_create_skill.Rd |only btw-1.2.0/btw/man/btw_this.character.Rd | 4 btw-1.2.0/btw/man/btw_tool_agent_subagent.Rd |only btw-1.2.0/btw/man/btw_tool_cran_package.Rd |only btw-1.2.0/btw/man/btw_tool_cran_search.Rd |only btw-1.2.0/btw/man/btw_tool_files_edit.Rd |only btw-1.2.0/btw/man/btw_tool_files_list.Rd |only btw-1.2.0/btw/man/btw_tool_files_read.Rd |only btw-1.2.0/btw/man/btw_tool_files_replace.Rd |only btw-1.2.0/btw/man/btw_tool_files_search.Rd |only btw-1.2.0/btw/man/btw_tool_files_write.Rd |only btw-1.2.0/btw/man/btw_tool_pkg_check.Rd | 1 btw-1.2.0/btw/man/btw_tool_pkg_coverage.Rd | 1 btw-1.2.0/btw/man/btw_tool_pkg_document.Rd | 1 btw-1.2.0/btw/man/btw_tool_pkg_load_all.Rd |only btw-1.2.0/btw/man/btw_tool_pkg_test.Rd | 3 btw-1.2.0/btw/man/btw_tool_run_r.Rd | 6 btw-1.2.0/btw/man/btw_tool_sessioninfo_is_package_installed.Rd |only btw-1.2.0/btw/man/btw_tool_sessioninfo_package.Rd |only btw-1.2.0/btw/man/btw_tool_sessioninfo_platform.Rd |only btw-1.2.0/btw/man/btw_tool_skill.Rd |only btw-1.2.0/btw/man/btw_tools.Rd | 40 btw-1.2.0/btw/man/deprecated.Rd |only btw-1.2.0/btw/man/install_btw_cli.Rd |only btw-1.2.0/btw/man/mcp.Rd | 60 + btw-1.2.0/btw/tests/testthat/_snaps/cli.md |only btw-1.2.0/btw/tests/testthat/_snaps/tool-cran.md |only btw-1.2.0/btw/tests/testthat/_snaps/tool-files-edit.md |only btw-1.2.0/btw/tests/testthat/_snaps/tool-files-list.md |only btw-1.2.0/btw/tests/testthat/_snaps/tool-files-read.md |only btw-1.2.0/btw/tests/testthat/_snaps/tool-files-write.md |only btw-1.2.0/btw/tests/testthat/_snaps/tool-sessioninfo.md |only btw-1.2.0/btw/tests/testthat/_snaps/tool_skills.md |only btw-1.2.0/btw/tests/testthat/fixtures/test-analyze-package.md |only btw-1.2.0/btw/tests/testthat/helpers-mock-agent.R |only btw-1.2.0/btw/tests/testthat/helpers-mock-pkg.R | 26 btw-1.2.0/btw/tests/testthat/helpers-skills.R |only btw-1.2.0/btw/tests/testthat/helpers-state.R |only btw-1.2.0/btw/tests/testthat/helpers.R | 37 btw-1.2.0/btw/tests/testthat/test-btw_client.R | 453 ++++++++-- btw-1.2.0/btw/tests/testthat/test-btw_task.R |only btw-1.2.0/btw/tests/testthat/test-cli.R |only btw-1.2.0/btw/tests/testthat/test-deprecated.R |only btw-1.2.0/btw/tests/testthat/test-mcp.R | 7 btw-1.2.0/btw/tests/testthat/test-tool-agent-custom.R |only btw-1.2.0/btw/tests/testthat/test-tool-agent-subagent.R |only btw-1.2.0/btw/tests/testthat/test-tool-cran.R |only btw-1.2.0/btw/tests/testthat/test-tool-env-df.R | 2 btw-1.2.0/btw/tests/testthat/test-tool-files-edit.R |only btw-1.2.0/btw/tests/testthat/test-tool-files-list.R |only btw-1.2.0/btw/tests/testthat/test-tool-files-read.R |only btw-1.2.0/btw/tests/testthat/test-tool-files-replace.R |only btw-1.2.0/btw/tests/testthat/test-tool-files-write.R |only btw-1.2.0/btw/tests/testthat/test-tool-pkg-devtools.R | 60 + btw-1.2.0/btw/tests/testthat/test-tool-run.R | 1 btw-1.2.0/btw/tests/testthat/test-tool-session-package-installed.R | 8 btw-1.2.0/btw/tests/testthat/test-tool-sessioninfo.R |only btw-1.2.0/btw/tests/testthat/test-tool_skills.R |only btw-1.2.0/btw/tests/testthat/test-tools.R | 97 ++ btw-1.2.0/btw/tests/testthat/test-utils.R | 53 + 136 files changed, 2245 insertions(+), 491 deletions(-)
Title: A Common API for Synthesizing Data
Description: A system built on 'tidymodels' for generating synthetic tabular
data. We provide tools for ordering a sequential synthesis, feature and
target engineering, sampling, hyperparameter tuning, enforcing constraints,
and adding extra noise during a synthesis.
Author: Aaron R. Williams [aut, cre] ,
Kyle Ueyama [aut],
Gabe Morrison [aut] ,
Jeremy Seeman [aut] ,
Elyse McFalls [ctb],
Claire Morton [ctb],
Livia Mucciolo [ctb],
Madeline Pickens [ctb],
Noah Zwiefel [ctb],
The Urban Institute [cph]
Maintainer: Aaron R. Williams <awilliams@urban.org>
Diff between tidysynthesis versions 0.1.2 dated 2025-11-11 and 0.1.3 dated 2026-03-16
DESCRIPTION | 6 MD5 | 35 ++-- NAMESPACE | 2 NEWS.md | 8 + R/enforce_schema.R | 11 + R/postsynth.R | 35 +++- R/presynth.R | 38 ++++ R/reset_postsynth.R |only R/synthesize.R | 212 ++++++++++++++++++++------- R/visit_sequence_api.R | 6 README.md | 9 - man/add_sequence_factor.Rd | 2 man/add_sequence_manual.Rd | 2 man/add_sequence_numeric.Rd | 2 man/postsynth_to_roadmap.Rd |only man/postsynth_to_synth_spec.Rd |only man/synthesize.Rd | 16 +- tests/testthat/test-presynth.R | 21 ++ tests/testthat/test-reset_postsynth.R |only tests/testthat/test-synthesis-control-flow.R |only tests/testthat/test-synthesize-example_na.R | 50 ++++++ 21 files changed, 362 insertions(+), 93 deletions(-)
Title: Accelerated Estimation of Robust Location and Scale
Description: Estimates robust location and scale parameters using
platform-specific Single Instruction, Multiple Data (SIMD) vectorization
and Intel Threading Building Blocks (TBB) for parallel processing.
Implements a novel variance-weighted ensemble estimator that adaptively
combines all available statistics. Included methods feature logistic
M-estimators, the estimators of Rousseeuw and Croux (1993), the Gini
mean difference, the scaled Median Absolute Deviation (MAD), the scaled
Interquartile Range (IQR), and unbiased standard deviations. Achieves
substantial speedups over existing implementations through an 'Rcpp'
backend and a unified dispatcher that automatically selects the optimal
estimator based on sample size.
Author: Dennis Alexis Valin Dittrich [aut, cre, cph]
Maintainer: Dennis Alexis Valin Dittrich <davd@economicscience.net>
Diff between robscale versions 0.1.5 dated 2026-03-09 and 0.2.1 dated 2026-03-16
robscale-0.1.5/robscale/src/qnsn_thresholds.h |only robscale-0.1.5/robscale/src/qnsn_tuned_thresholds.h |only robscale-0.1.5/robscale/tools |only robscale-0.2.1/robscale/DESCRIPTION | 34 robscale-0.2.1/robscale/MD5 | 122 - robscale-0.2.1/robscale/NAMESPACE | 10 robscale-0.2.1/robscale/NEWS.md | 40 robscale-0.2.1/robscale/R/RcppExports.R | 40 robscale-0.2.1/robscale/R/adm.R | 2 robscale-0.2.1/robscale/R/ci_utils.R |only robscale-0.2.1/robscale/R/gmd.R |only robscale-0.2.1/robscale/R/iqr_scaled.R |only robscale-0.2.1/robscale/R/mad_scaled.R |only robscale-0.2.1/robscale/R/qn.R | 42 robscale-0.2.1/robscale/R/robLoc.R | 2 robscale-0.2.1/robscale/R/robScale.R | 30 robscale-0.2.1/robscale/R/robscale-package.R | 38 robscale-0.2.1/robscale/R/scale_robust.R |only robscale-0.2.1/robscale/R/sd_c4.R |only robscale-0.2.1/robscale/R/sn.R | 42 robscale-0.2.1/robscale/build/partial.rdb |binary robscale-0.2.1/robscale/configure | 85 robscale-0.2.1/robscale/inst/CITATION | 28 robscale-0.2.1/robscale/inst/WORDLIST | 946 ---------- robscale-0.2.1/robscale/man/adm.Rd | 2 robscale-0.2.1/robscale/man/get_consistency_constant.Rd |only robscale-0.2.1/robscale/man/gmd.Rd |only robscale-0.2.1/robscale/man/iqr_scaled.Rd |only robscale-0.2.1/robscale/man/mad_scaled.Rd |only robscale-0.2.1/robscale/man/qn.Rd | 34 robscale-0.2.1/robscale/man/robLoc.Rd | 2 robscale-0.2.1/robscale/man/robScale.Rd | 26 robscale-0.2.1/robscale/man/robscale-package.Rd | 39 robscale-0.2.1/robscale/man/scale_robust.Rd |only robscale-0.2.1/robscale/man/sd_c4.Rd |only robscale-0.2.1/robscale/man/sn.Rd | 34 robscale-0.2.1/robscale/src/Makevars.in | 4 robscale-0.2.1/robscale/src/Makevars.win | 2 robscale-0.2.1/robscale/src/RcppExports.cpp | 129 + robscale-0.2.1/robscale/src/adm.cpp | 37 robscale-0.2.1/robscale/src/ensemble.cpp |only robscale-0.2.1/robscale/src/estimators_internal.h |only robscale-0.2.1/robscale/src/gmd.cpp |only robscale-0.2.1/robscale/src/iqr.cpp |only robscale-0.2.1/robscale/src/mad.cpp |only robscale-0.2.1/robscale/src/miniselect |only robscale-0.2.1/robscale/src/pdq_select.h |only robscale-0.2.1/robscale/src/qn_estimator.cpp | 364 ++- robscale-0.2.1/robscale/src/qnsn_dispatcher.h | 17 robscale-0.2.1/robscale/src/qnsn_hardware_info.h | 44 robscale-0.2.1/robscale/src/qnsn_kernels.h | 13 robscale-0.2.1/robscale/src/qnsn_runtime_config.h | 72 robscale-0.2.1/robscale/src/qnsn_sort_utils.h | 15 robscale-0.2.1/robscale/src/rob_loc.cpp | 87 robscale-0.2.1/robscale/src/rob_scale.cpp | 124 - robscale-0.2.1/robscale/src/robscale_config.h |only robscale-0.2.1/robscale/src/robust_core.h | 168 - robscale-0.2.1/robscale/src/sd_c4.cpp |only robscale-0.2.1/robscale/src/sn_estimator.cpp | 162 - robscale-0.2.1/robscale/src/sort_net.h | 186 + robscale-0.2.1/robscale/tests/testthat/test-build-config.R |only robscale-0.2.1/robscale/tests/testthat/test-ci.R |only robscale-0.2.1/robscale/tests/testthat/test-cross-check.R | 6 robscale-0.2.1/robscale/tests/testthat/test-ensemble.R |only robscale-0.2.1/robscale/tests/testthat/test-gmd.R |only robscale-0.2.1/robscale/tests/testthat/test-iqr-pdqselect.R |only robscale-0.2.1/robscale/tests/testthat/test-iqr.R |only robscale-0.2.1/robscale/tests/testthat/test-large-n-correctness.R |only robscale-0.2.1/robscale/tests/testthat/test-mad-pdqselect.R |only robscale-0.2.1/robscale/tests/testthat/test-mad-scaled.R |only robscale-0.2.1/robscale/tests/testthat/test-qn-pdqselect.R |only robscale-0.2.1/robscale/tests/testthat/test-refactor-qnsn.R |only robscale-0.2.1/robscale/tests/testthat/test-refactor-robloc.R |only robscale-0.2.1/robscale/tests/testthat/test-refactor-scale-adm.R |only robscale-0.2.1/robscale/tests/testthat/test-robLoc.R | 4 robscale-0.2.1/robscale/tests/testthat/test-robScale.R | 4 robscale-0.2.1/robscale/tests/testthat/test-robscale-pdqselect.R |only robscale-0.2.1/robscale/tests/testthat/test-runtime-config.R |only robscale-0.2.1/robscale/tests/testthat/test-scale-robust.R |only robscale-0.2.1/robscale/tests/testthat/test-sd-c4.R |only robscale-0.2.1/robscale/tests/testthat/test-simd-dispatch.R |only robscale-0.2.1/robscale/tests/testthat/test-sn-pdqselect.R |only robscale-0.2.1/robscale/tests/testthat/test-sorted-variants.R |only 83 files changed, 1490 insertions(+), 1546 deletions(-)
Title: Access Australian Electoral Commission Data
Description: Provides clean, tidy access to Australian Electoral Commission
(AEC) federal election data. Includes results for the House of
Representatives and Senate from 2007 onwards, at both division and polling
place level. Data is downloaded directly from the AEC
<https://results.aec.gov.au> on first use and cached locally for
subsequent calls.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between readaec versions 0.1.1 dated 2026-03-10 and 0.1.2 dated 2026-03-16
DESCRIPTION | 8 ++++---- MD5 | 42 +++++++++++++++++++++--------------------- NEWS.md | 7 +++++++ R/candidates.R | 8 ++++++++ R/house.R | 12 ++++++++++++ R/senate.R | 2 ++ R/swing.R | 2 ++ R/utils.R | 4 +++- README.md | 16 +++++++++++----- man/clear_cache.Rd | 2 ++ man/get_candidates.Rd | 2 ++ man/get_enrolment.Rd | 2 ++ man/get_fp.Rd | 2 ++ man/get_fp_by_booth.Rd | 2 ++ man/get_members_elected.Rd | 2 ++ man/get_polling_places.Rd | 2 ++ man/get_senate.Rd | 2 ++ man/get_swing.Rd | 2 ++ man/get_tcp.Rd | 2 ++ man/get_tpp.Rd | 2 ++ man/get_tpp_by_booth.Rd | 2 ++ man/get_turnout.Rd | 2 ++ 22 files changed, 96 insertions(+), 31 deletions(-)
Title: Bayesian Longitudinal Regularized Quantile Mixed Model
Description: With high-dimensional omics features, repeated measure ANOVA leads to longitudinal gene-environment interaction studies that have intra-cluster correlations, outlying observations and structured sparsity arising from the ANOVA design. In this package, we have developed robust sparse Bayesian mixed effect models tailored for the above studies (Fan et al. (2025) <doi:10.1093/jrsssc/qlaf027>). An efficient Gibbs sampler has been developed to facilitate fast computation. The Markov chain Monte Carlo algorithms of the proposed and alternative methods are efficiently implemented in 'C++'. The development of this software package and the associated statistical methods have been partially supported by an Innovative Research Award from Johnson Cancer Research Center, Kansas State University.
Author: Kun Fan [aut, cre],
Shejuty Devnath [aut],
Cen Wu [aut]
Maintainer: Kun Fan <kfan@ksu.edu>
Diff between mixedBayes versions 0.2.2 dated 2026-03-15 and 0.2.3 dated 2026-03-16
DESCRIPTION | 8 +-- MD5 | 78 ++++++++++++++--------------- NEWS.md | 6 ++ R/GE.R | 10 +++ R/LONBGLSS.R | 39 +------------- R/LONBGLSS_1.R | 37 -------------- R/LONRBGLSS.R | 36 ------------- R/LONRBGLSS_1.R | 37 -------------- R/RcppExports.R | 28 +++++----- R/data.R | 14 +++-- R/mixedBayes-package.R | 4 - R/mixedBayes.R | 121 ++++++++++++++++++++++++++++++++++++---------- R/predict_mixedBayes.R | 37 +++++++++----- R/reformat.R | 41 +++++++++++---- R/selection.R | 7 +- README.md | 8 +-- man/GE.Rd | 4 - man/data.Rd | 14 +++-- man/mixedBayes-package.Rd | 4 - man/mixedBayes.Rd | 34 ++++++------ man/predict_mixedBayes.Rd | 6 +- man/reformat.Rd | 4 - man/selection.Rd | 4 - src/BGL.cpp | 51 ++++++++++--------- src/BGL2.cpp | 77 ++++++++++++++--------------- src/BGLSS.cpp | 49 ++++++++++-------- src/BGLSS2.cpp | 80 +++++++++++++++--------------- src/BL.cpp | 47 ++++++++++------- src/BL2.cpp | 77 ++++++++++++++--------------- src/BLSS.cpp | 49 ++++++++++-------- src/BLSS2.cpp | 79 ++++++++++++++---------------- src/RBGL.cpp | 52 +++++++++---------- src/RBGL2.cpp | 68 ++++++++++++------------- src/RBGLSS.cpp | 54 +++++++++----------- src/RBGLSS2.cpp | 36 ++++++------- src/RBL.cpp | 50 +++++++++---------- src/RBL2.cpp | 67 ++++++++++++------------- src/RBLSS.cpp | 51 +++++++++---------- src/RBLSS2.cpp | 71 ++++++++++++-------------- src/RcppExports.cpp | 56 ++++++++++----------- 40 files changed, 796 insertions(+), 799 deletions(-)
Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for
the complete machine learning life cycle, see <https://mlflow.org/>.
This package supports installing 'MLflow', tracking experiments,
creating and running projects, and saving and serving models.
Author: Ben Wilson [aut, cre],
Matei Zaharia [aut],
Javier Luraschi [aut],
Kevin Kuo [aut] ,
RStudio [cph]
Maintainer: Ben Wilson <benjamin.wilson@databricks.com>
Diff between mlflow versions 3.9.0 dated 2026-02-03 and 3.10.1 dated 2026-03-16
DESCRIPTION | 6 +++--- MD5 | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-)
Title: Fast Numerical Maximum Likelihood Estimation for Latent Markov
Models
Description: A variety of latent Markov models, including hidden Markov models, hidden semi-Markov models,
state-space models and continuous-time variants can be formulated and estimated within the same framework via directly maximising the likelihood function using the so-called forward algorithm.
Applied researchers often need custom models that standard software does not easily support.
Writing tailored 'R' code offers flexibility but suffers from slow estimation speeds.
We address these issues by providing easy-to-use functions (written in 'C++' for speed) for common tasks like the forward algorithm.
These functions can be combined into custom models in a Lego-type approach, offering up to 10-20 times faster estimation via standard numerical optimisers.
To aid in building fully custom likelihood functions, several vignettes are included that show how to simulate data from and estimate all the above model classes.
Author: Jan-Ole Fischer [aut, cre]
Maintainer: Jan-Ole Fischer <jan-ole.fischer@mailbox.org>
Diff between LaMa versions 2.0.6 dated 2025-09-23 and 2.1.0 dated 2026-03-16
LaMa-2.0.6/LaMa/man/dirichlet.Rd |only LaMa-2.0.6/LaMa/man/pseudo_res_discrete.Rd |only LaMa-2.0.6/LaMa/vignettes/HSMMs_cache/html/model_muskox_db5ee275b887b10204620537cc278451.RData |only LaMa-2.0.6/LaMa/vignettes/HSMMs_cache/html/model_muskox_db5ee275b887b10204620537cc278451.rdb |only LaMa-2.0.6/LaMa/vignettes/HSMMs_cache/html/model_muskox_db5ee275b887b10204620537cc278451.rdx |only LaMa-2.0.6/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_381c8978531f280149019df595b45f34.RData |only LaMa-2.0.6/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_381c8978531f280149019df595b45f34.rdb |only LaMa-2.0.6/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_381c8978531f280149019df595b45f34.rdx |only LaMa-2.0.6/LaMa/vignettes/State_space_models_cache/html/model_39a632569c8d52d92ef4aa54d3616054.RData |only LaMa-2.0.6/LaMa/vignettes/State_space_models_cache/html/model_39a632569c8d52d92ef4aa54d3616054.rdb |only LaMa-2.0.6/LaMa/vignettes/State_space_models_cache/html/model_39a632569c8d52d92ef4aa54d3616054.rdx |only LaMa-2.1.0/LaMa/DESCRIPTION | 26 LaMa-2.1.0/LaMa/LICENSE |only LaMa-2.1.0/LaMa/MD5 | 202 +- LaMa-2.1.0/LaMa/NAMESPACE | 38 LaMa-2.1.0/LaMa/R/LaMa-package.R | 2 LaMa-2.1.0/LaMa/R/RcppExports.R | 4 LaMa-2.1.0/LaMa/R/decoding_functions.R | 89 LaMa-2.1.0/LaMa/R/distribution_functions.R | 184 -- LaMa-2.1.0/LaMa/R/forward_algorithms.R | 919 ++++++---- LaMa-2.1.0/LaMa/R/helper_functions.R | 38 LaMa-2.1.0/LaMa/R/hsmm_functions_old.R | 4 LaMa-2.1.0/LaMa/R/mcreport.R |only LaMa-2.1.0/LaMa/R/model_matrix_functions.R | 25 LaMa-2.1.0/LaMa/R/qreml_functions.R | 85 LaMa-2.1.0/LaMa/R/report.R |only LaMa-2.1.0/LaMa/R/residual_functions.R | 546 ++--- LaMa-2.1.0/LaMa/R/stationary_functions.R | 26 LaMa-2.1.0/LaMa/R/tpm_functions.R | 202 +- LaMa-2.1.0/LaMa/R/zzz.R |only LaMa-2.1.0/LaMa/README.md | 40 LaMa-2.1.0/LaMa/build/vignette.rds |binary LaMa-2.1.0/LaMa/inst/doc/Continuous_time_HMMs.R | 8 LaMa-2.1.0/LaMa/inst/doc/Continuous_time_HMMs.Rmd | 20 LaMa-2.1.0/LaMa/inst/doc/Continuous_time_HMMs.html | 24 LaMa-2.1.0/LaMa/inst/doc/HSMMs.R | 2 LaMa-2.1.0/LaMa/inst/doc/HSMMs.Rmd | 16 LaMa-2.1.0/LaMa/inst/doc/HSMMs.html | 40 LaMa-2.1.0/LaMa/inst/doc/Inhomogeneous_HMMs.R | 2 LaMa-2.1.0/LaMa/inst/doc/Inhomogeneous_HMMs.Rmd | 20 LaMa-2.1.0/LaMa/inst/doc/Inhomogeneous_HMMs.html | 32 LaMa-2.1.0/LaMa/inst/doc/Intro_to_LaMa.R | 2 LaMa-2.1.0/LaMa/inst/doc/Intro_to_LaMa.Rmd | 16 LaMa-2.1.0/LaMa/inst/doc/Intro_to_LaMa.html | 42 LaMa-2.1.0/LaMa/inst/doc/LaMa_and_RTMB.R | 60 LaMa-2.1.0/LaMa/inst/doc/LaMa_and_RTMB.Rmd | 63 LaMa-2.1.0/LaMa/inst/doc/LaMa_and_RTMB.html | 106 - LaMa-2.1.0/LaMa/inst/doc/Longitudinal_data.Rmd | 2 LaMa-2.1.0/LaMa/inst/doc/Longitudinal_data.html | 10 LaMa-2.1.0/LaMa/inst/doc/MMMPPs.R | 10 LaMa-2.1.0/LaMa/inst/doc/MMMPPs.Rmd | 20 LaMa-2.1.0/LaMa/inst/doc/MMMPPs.html | 36 LaMa-2.1.0/LaMa/inst/doc/Penalised_splines.R | 7 LaMa-2.1.0/LaMa/inst/doc/Penalised_splines.Rmd | 29 LaMa-2.1.0/LaMa/inst/doc/Penalised_splines.html | 34 LaMa-2.1.0/LaMa/inst/doc/Periodic_HMMs.Rmd | 18 LaMa-2.1.0/LaMa/inst/doc/Periodic_HMMs.html | 30 LaMa-2.1.0/LaMa/inst/doc/State_space_models.R | 2 LaMa-2.1.0/LaMa/inst/doc/State_space_models.Rmd | 12 LaMa-2.1.0/LaMa/inst/doc/State_space_models.html | 16 LaMa-2.1.0/LaMa/man/LaMa-package.Rd | 4 LaMa-2.1.0/LaMa/man/MCreport.Rd |only LaMa-2.1.0/LaMa/man/cosinor.Rd | 2 LaMa-2.1.0/LaMa/man/figures/README-visualization-1.png |binary LaMa-2.1.0/LaMa/man/forward.Rd | 29 LaMa-2.1.0/LaMa/man/forward_g.Rd | 42 LaMa-2.1.0/LaMa/man/forward_hsmm.Rd | 2 LaMa-2.1.0/LaMa/man/forward_ihsmm.Rd | 2 LaMa-2.1.0/LaMa/man/forward_p.Rd | 2 LaMa-2.1.0/LaMa/man/forward_phsmm.Rd | 2 LaMa-2.1.0/LaMa/man/forward_sp.Rd | 4 LaMa-2.1.0/LaMa/man/logLik.LaMaModel.Rd |only LaMa-2.1.0/LaMa/man/make_matrices.Rd | 4 LaMa-2.1.0/LaMa/man/penalty.Rd | 2 LaMa-2.1.0/LaMa/man/penalty2.Rd | 4 LaMa-2.1.0/LaMa/man/plot.LaMaResiduals.Rd | 59 LaMa-2.1.0/LaMa/man/predict.LaMa_matrices.Rd | 4 LaMa-2.1.0/LaMa/man/pseudo_res.Rd | 54 LaMa-2.1.0/LaMa/man/qreml.Rd | 4 LaMa-2.1.0/LaMa/man/qreml_old.Rd | 39 LaMa-2.1.0/LaMa/man/report.Rd |only LaMa-2.1.0/LaMa/man/rgmrf.Rd |only LaMa-2.1.0/LaMa/man/stateprobs.Rd | 11 LaMa-2.1.0/LaMa/man/stateprobs_g.Rd | 11 LaMa-2.1.0/LaMa/man/stateprobs_p.Rd | 12 LaMa-2.1.0/LaMa/man/stationary_p_sparse.Rd | 2 LaMa-2.1.0/LaMa/man/tpm.Rd | 7 LaMa-2.1.0/LaMa/man/tpm_cont.Rd | 5 LaMa-2.1.0/LaMa/man/tpm_g.Rd | 18 LaMa-2.1.0/LaMa/man/tpm_phsmm.Rd | 2 LaMa-2.1.0/LaMa/man/trigBasisExp.Rd | 14 LaMa-2.1.0/LaMa/man/vm.Rd | 2 LaMa-2.1.0/LaMa/man/wrpcauchy.Rd | 8 LaMa-2.1.0/LaMa/src/Makevars | 7 LaMa-2.1.0/LaMa/src/RcppExports.cpp | 15 LaMa-2.1.0/LaMa/src/tpm_functions.cpp | 41 LaMa-2.1.0/LaMa/vignettes/Continuous_time_HMMs.Rmd | 20 LaMa-2.1.0/LaMa/vignettes/HSMMs.Rmd | 16 LaMa-2.1.0/LaMa/vignettes/HSMMs_cache/html/model_muskox_2f8f8c2537165513dddc3a17a7afb670.RData |only LaMa-2.1.0/LaMa/vignettes/HSMMs_cache/html/model_muskox_2f8f8c2537165513dddc3a17a7afb670.rdb |only LaMa-2.1.0/LaMa/vignettes/HSMMs_cache/html/model_muskox_2f8f8c2537165513dddc3a17a7afb670.rdx |only LaMa-2.1.0/LaMa/vignettes/Inhomogeneous_HMMs.Rmd | 20 LaMa-2.1.0/LaMa/vignettes/Intro_to_LaMa.Rmd | 16 LaMa-2.1.0/LaMa/vignettes/LaMa_and_RTMB.Rmd | 63 LaMa-2.1.0/LaMa/vignettes/Longitudinal_data.Rmd | 2 LaMa-2.1.0/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_5337473c7e86ce7657d091bb02876cd4.RData |only LaMa-2.1.0/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_5337473c7e86ce7657d091bb02876cd4.rdb |only LaMa-2.1.0/LaMa/vignettes/Longitudinal_data_cache/html/model_pool_5337473c7e86ce7657d091bb02876cd4.rdx |only LaMa-2.1.0/LaMa/vignettes/MMMPPs.Rmd | 20 LaMa-2.1.0/LaMa/vignettes/Penalised_splines.Rmd | 29 LaMa-2.1.0/LaMa/vignettes/Periodic_HMMs.Rmd | 18 LaMa-2.1.0/LaMa/vignettes/State_space_models.Rmd | 12 LaMa-2.1.0/LaMa/vignettes/State_space_models_cache/html/model_205a7568c4a222fd1c3fa35c4a2d3ecb.RData |only LaMa-2.1.0/LaMa/vignettes/State_space_models_cache/html/model_205a7568c4a222fd1c3fa35c4a2d3ecb.rdb |only LaMa-2.1.0/LaMa/vignettes/State_space_models_cache/html/model_205a7568c4a222fd1c3fa35c4a2d3ecb.rdx |only LaMa-2.1.0/LaMa/vignettes/refs.bib | 10 116 files changed, 2127 insertions(+), 1622 deletions(-)
More information about essentialstools at CRAN
Permanent link
Title: Exponential-Family Random Graph Models for Network Clustering
Description: Implements clustering and estimates parameters in Exponential-Family Random Graph Models for static undirected and directed networks, developed in Vu et al. (2013) <https://projecteuclid.org/euclid.aoas/1372338477>.
Author: Amal Agarwal [aut],
Kevin H. Lee [aut],
Lingzhou Xue [aut, ths, cre],
Anna Yinqi Zhang [com]
Maintainer: Lingzhou Xue <lzxue@psu.edu>
This is a re-admission after prior archival of version 1.0.0 dated 2021-02-01
Diff between ergmclust versions 1.0.0 dated 2021-02-01 and 1.0.1 dated 2026-03-16
DESCRIPTION | 26 MD5 | 52 NAMESPACE | 1 R/RcppExports.R | 242 ++- R/ergmclust.R | 2173 +++++++++++++++++++------------ build |only man/ELBO_conv_HMM_stat_undir.Rd | 12 man/ELBO_conv_weighted_stat_undir.Rd |only man/ELBO_conv_weighted_stat_undir_K1.Rd |only man/colsum_Mat_new.Rd |only man/epan.Rd |only man/ergmclust-package.Rd | 81 - man/ergmclust.ICL.Rd | 144 +- man/ergmclust.Rd | 157 +- man/ergmclust.plot.Rd | 126 - man/gamma_update_weighted_stat_undir.Rd |only man/grad_HMM_stat_undir_K1.Rd | 2 man/grad_theta_weighted_stat_undir.Rd |only man/grad_theta_weighted_stat_undir_K1.Rd |only man/hess_HMM_stat_dir_re_K1.Rd | 2 man/hess_HMM_stat_undir.Rd | 8 man/hess_theta_weighted_stat_undir.Rd |only man/hess_theta_weighted_stat_undir_K1.Rd |only man/rowsum_Mat_new.Rd |only man/tie_clust_partition.Rd |only man/wrapper_HMM_stat_dir_Dens.Rd | 4 man/wrapper_HMM_stat_undir_Dens.Rd | 17 man/wrapper_weighted_stat_undir.Rd |only src/Makevars | 4 src/Makevars.win | 1 src/RcppExports.cpp | 166 ++ src/directed.cpp | 32 src/ergmclust.cpp |only src/undirected.cpp | 2 34 files changed, 2021 insertions(+), 1231 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-12-01 1.9.15
2024-01-29 0.9.12
2022-12-17 0.9.11.4
2022-06-17 0.9.11.3
2022-01-09 0.9.10
2020-05-13 0.9.8
2019-11-05 0.9.7
2018-10-24 0.9.5
2018-10-02 0.9.3
2017-08-21 0.9.1
2016-07-15 0.9
2016-03-14 0.8.9
2016-02-23 0.8.7
2015-11-20 0.8.6
2015-11-06 0.8.5
2015-09-11 0.8.1
2015-09-10 0.8
2015-07-08 0.7
2015-04-18 0.6.9
2014-11-01 0.6-7
2014-01-24 0.6-6
2013-11-26 0.6.5
2013-09-06 0.6.4
2013-08-29 0.6.3
2013-04-15 0.6.2
2013-04-03 0.6.1
2013-02-08 0.6
2012-04-04 0.5.7
2012-03-22 0.5.6
2012-03-20 0.5.5
2012-01-16 0.5.4
2012-01-12 0.5.3
2011-11-07 0.5.1
2011-10-12 0.5
2011-10-05 0.4.1
2011-09-30 0.4
2011-07-02 0.3.2
2011-06-30 0.3.1
2011-05-19 0.3
2010-11-28 0.2.1
2010-10-15 0.2
2010-07-24 0.1.8
2010-03-16 0.1.5
2009-11-24 0.1.1
2009-11-11 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-09-11 0.1.10
2023-03-14 0.1.8
2021-10-13 0.1.7
Title: Time Series Analysis Library
Description: The library allows to perform a multivariate time series
classification based on the use of Discrete Wavelet Transform for
feature extraction, a step wise discriminant to select the most
relevant features and finally, the use of a linear or quadratic
discriminant for classification. Note that all these steps can be done
separately which allows to implement new steps. Velasco, I., Sipols,
A., de Blas, C. S., Pastor, L., & Bayona, S. (2023)
<doi:10.1186/S12938-023-01079-X>. Percival, D. B., & Walden, A. T.
(2000,ISBN:0521640687). Maharaj, E. A., & Alonso, A. M. (2014)
<doi:10.1016/j.csda.2013.09.006>.
Author: Ivan Velasco [aut, cre, cph]
Maintainer: Ivan Velasco <ivan.velasco@urjc.es>
This is a re-admission after prior archival of version 0.1.3 dated 2024-07-02
Diff between TSEAL versions 0.1.3 dated 2024-07-02 and 0.1.4 dated 2026-03-16
TSEAL-0.1.3/TSEAL/R/Rdsm.R |only TSEAL-0.1.4/TSEAL/DESCRIPTION | 19 TSEAL-0.1.4/TSEAL/MD5 | 68 +-- TSEAL-0.1.4/TSEAL/NAMESPACE | 8 TSEAL-0.1.4/TSEAL/R/AuxFuncts.R | 231 ++++++++--- TSEAL-0.1.4/TSEAL/R/Discriminant.R | 294 +++++++------- TSEAL-0.1.4/TSEAL/R/MultiWaveAnalisysParallel.R | 200 ++------- TSEAL-0.1.4/TSEAL/R/StepDiscrim.R | 186 +++++--- TSEAL-0.1.4/TSEAL/R/WaveAnalisys.R |only TSEAL-0.1.4/TSEAL/build |only TSEAL-0.1.4/TSEAL/inst/WORDLIST | 15 TSEAL-0.1.4/TSEAL/inst/doc |only TSEAL-0.1.4/TSEAL/inst/extdata/ECGExample.rda |binary TSEAL-0.1.4/TSEAL/inst/extdata/parameters.rda |only TSEAL-0.1.4/TSEAL/man/KFCV.MultiWaveAnalysis.Rd | 8 TSEAL-0.1.4/TSEAL/man/KFCV.array.Rd | 12 TSEAL-0.1.4/TSEAL/man/LOOCV.MultiWaveAnalysis.Rd | 8 TSEAL-0.1.4/TSEAL/man/LOOCV.array.Rd | 2 TSEAL-0.1.4/TSEAL/man/SameDiscrim.Rd | 14 TSEAL-0.1.4/TSEAL/man/StepDiscrim.Rd | 5 TSEAL-0.1.4/TSEAL/man/StepDiscrimV.Rd | 2 TSEAL-0.1.4/TSEAL/man/chooseLevel.Rd | 3 TSEAL-0.1.4/TSEAL/man/classify.MultiWaveAnalysis.Rd | 8 TSEAL-0.1.4/TSEAL/man/classify.array.Rd | 8 TSEAL-0.1.4/TSEAL/man/extractSubset.Rd | 10 TSEAL-0.1.4/TSEAL/man/filterParameters.Rd |only TSEAL-0.1.4/TSEAL/man/generateStepDiscrim.Rd | 11 TSEAL-0.1.4/TSEAL/man/testFilters.Rd | 20 TSEAL-0.1.4/TSEAL/man/testModel.Rd | 15 TSEAL-0.1.4/TSEAL/man/trainModel.MultiWaveAnalysis.Rd | 7 TSEAL-0.1.4/TSEAL/man/trainModel.array.Rd | 4 TSEAL-0.1.4/TSEAL/tests/spelling.R | 5 TSEAL-0.1.4/TSEAL/tests/testthat/helper-data.R |only TSEAL-0.1.4/TSEAL/tests/testthat/test-AuxFunct.R | 125 ++--- TSEAL-0.1.4/TSEAL/tests/testthat/test-Discriminant.R | 167 +++---- TSEAL-0.1.4/TSEAL/tests/testthat/test-MultiWaveAnalisys.R | 19 TSEAL-0.1.4/TSEAL/tests/testthat/test-StepDiscrim.R | 22 - TSEAL-0.1.4/TSEAL/vignettes |only 38 files changed, 766 insertions(+), 730 deletions(-)
Title: Read, Write, Visualize and Manipulate PDB Files
Description: Provides tools to read, write, visualize Protein Data Bank (PDB) files and
perform some structural manipulations.
Author: Leonard Mada [cre, ctb],
Julien Ide [aut]
Maintainer: Leonard Mada <lmada@umft.ro>
Diff between Rpdb versions 2.4.1 dated 2025-09-15 and 2.4.3 dated 2026-03-16
DESCRIPTION | 14 ++-- MD5 | 63 ++++++++++----------- NEWS.md | 12 +++- R/backbone.R |only R/conect.R | 21 ++++++- R/merge.coords.R | 22 +++---- R/mirror.R | 72 +++++++++++++----------- R/mirrorHelpers.R | 104 +++++++++++++++++++--------------- R/read.pdb.R | 28 ++++----- R/replicate.R | 133 +++++++++++++++++++++----------------------- R/rotation.R | 38 ++++++------ R/rotationHelpers.R | 34 +++++------ R/split.pdb.R | 14 ++-- R/translation.R | 42 +++++++------- R/translationHelpers.R | 50 ++++++++-------- R/vectorialOperations.R | 6 +- R/viewAxis.R | 88 +++++++++++++++-------------- R/visualize.R | 134 ++++++++++++++++++++++++++++----------------- R/wrap.R | 73 ++++++++++++------------ man/conect.Rd | 9 ++- man/merge.coords.Rd | 2 man/mirror.Rd | 12 ++-- man/mirrorHelpers.Rd | 32 +++++----- man/read.pdb.Rd | 2 man/replicate.Rd | 8 +- man/rotation.Rd | 14 ++-- man/rotationHelpers.Rd | 14 ++-- man/translation.Rd | 16 ++--- man/translationHelpers.Rd | 26 ++++---- man/vectorialOperations.Rd | 6 +- man/viewAxis.Rd | 8 +- man/visualize.Rd | 32 +++++++--- man/wrap.Rd | 8 +- 33 files changed, 618 insertions(+), 519 deletions(-)
Title: Download and Analyze Spatial Development Data from INKAR
Description: A lightweight package to download spatial development indicators
from the BBSR INKAR (Indikatoren und Karten zur Raum- und Stadtentwicklung) database.
It provides a modern interface using 'httr2', robust caching, concurrent API querying
for fast spatial dimension lookups, and native geospatial mapping integration.
Author: Omer Furkan Coban [aut, cre]
Maintainer: Omer Furkan Coban <oemer.furkan.coban@uni-oldenburg.de>
Diff between inkaR versions 0.4.3 dated 2026-03-13 and 0.4.4 dated 2026-03-16
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 5 +++++ R/api.R | 16 +++++++++++++++- R/download.R | 4 ++-- R/inkaR-package.R | 8 ++++---- man/inkaR-package.Rd | 8 ++++---- man/inkaR.Rd | 4 ++-- 8 files changed, 42 insertions(+), 23 deletions(-)
Title: Consistent API for Hypothesis Testing
Description: Provides a consistent API for hypothesis testing built on
principles from 'Structure and Interpretation of Computer Programs':
data abstraction, closure (combining tests yields tests), and
higher-order functions (transforming tests). Implements z-tests,
Wald tests, likelihood ratio tests, Fisher's method for combining
p-values, and multiple testing corrections. Designed for use by
other packages that want to wrap their hypothesis tests in a
consistent interface.
Author: Alexander Towell [aut, cre]
Maintainer: Alexander Towell <lex@metafunctor.com>
Diff between hypothesize versions 0.11.0 dated 2026-02-28 and 1.0.0 dated 2026-03-16
DESCRIPTION | 6 - MD5 | 34 +++--- NEWS.md | 23 ++++ R/hypothesize.R | 186 ++++++++++++++++++++------------- README.md | 63 ++++++----- inst/doc/boolean-algebra.html | 8 - inst/doc/introduction.R | 15 +- inst/doc/introduction.Rmd | 19 +-- inst/doc/introduction.html | 43 ++++--- man/confint.hypothesis_test.Rd | 1 man/fisher_combine.Rd | 1 man/intersection_test.Rd | 9 - man/invert_test.Rd | 4 man/lrt.Rd | 39 ++++-- man/score_test.Rd | 6 - man/union_test.Rd | 11 - tests/testthat/test-hypothesis-tests.R | 166 +++++++++++++++++++++++++++++ vignettes/introduction.Rmd | 19 +-- 18 files changed, 459 insertions(+), 194 deletions(-)
Title: Distributions Compatible with Automatic Differentiation by
'RTMB'
Description: Extends the functionality of the 'RTMB' <https://kaskr.r-universe.dev/RTMB> package by providing a collection of non-standard probability distributions compatible with automatic differentiation (AD). While 'RTMB' enables flexible and efficient modelling, including random effects, its built-in support is limited to standard distributions. The package adds additional AD-compatible distributions, broadening the range of models that can be implemented and estimated using 'RTMB'. Automatic differentiation and Laplace approximation are described in Kristensen et al. (2016) <doi:10.18637/jss.v070.i05>.
Author: Jan-Ole Fischer [aut, cre]
Maintainer: Jan-Ole Fischer <jan-ole.fischer@mailbox.org>
Diff between RTMBdist versions 1.0.1 dated 2026-02-24 and 1.0.2 dated 2026-03-16
DESCRIPTION | 6 - MD5 | 44 ++++++++----- NAMESPACE | 22 ++++++ R/aaa_utils.R | 14 ++-- R/beta2.R | 1 R/betaprime.R |only R/dirmult.R | 10 +-- R/gengamma.R |only R/invchisq.R |only R/invgamma.R |only R/kumar.R |only R/mvt.R | 4 - R/pgweibull.R | 42 +++--------- R/skellam.R |only R/vmf.R | 4 - R/vmf2.R | 4 - R/wishart.R | 163 ++++++++++++++++++++++++++++++++++++------------- inst/doc/Examples.html | 10 +-- inst/doc/distlist.Rmd | 16 ++++ inst/doc/distlist.html | 25 ++++++- man/betaprime.Rd |only man/gengamma.Rd |only man/invchisq.Rd |only man/invgamma.Rd |only man/kumar.Rd |only man/pgweibull.Rd | 8 +- man/skellam.Rd |only man/wishart.Rd | 16 ++++ vignettes/distlist.Rmd | 16 ++++ 29 files changed, 286 insertions(+), 119 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-03-03 0.1.0
Title: Methods for Multivariate Quadrature
Description: Provides methods to construct multivariate grids, which can be used
for multivariate quadrature. This grids can be based on different quadrature
rules like Newton-Cotes formulas (trapezoidal-, Simpson's- rule, ...) or Gauss
quadrature (Gauss-Hermite, Gauss-Legendre, ...). For the construction of the
multidimensional grid the product-rule or the combination- technique can be
applied.
Author: Constantin Weiser [aut, cre]
Maintainer: Constantin Weiser <constantin.weiser@gmail.com>
Diff between mvQuad versions 1.0-8 dated 2023-09-19 and 1.0-10 dated 2026-03-16
DESCRIPTION | 17 +++++++++++------ MD5 | 12 ++++++------ build/vignette.rds |binary demo/mvQuad_demo.R | 4 ++-- inst/NEWS | 4 ++++ inst/doc/mvQuad_intro.R | 28 ++++++++++++++-------------- inst/doc/mvQuad_intro.html | 15 +++++++-------- 7 files changed, 44 insertions(+), 36 deletions(-)
Title: Hyperparameter Optimization for 'mlr3'
Description: Hyperparameter optimization package of the 'mlr3' ecosystem.
It features highly configurable search spaces via the 'paradox'
package and finds optimal hyperparameter configurations for any 'mlr3'
learner. 'mlr3tuning' works with several optimization algorithms e.g.
Random Search, Iterated Racing, Bayesian Optimization (in 'mlr3mbo')
and Hyperband (in 'mlr3hyperband'). Moreover, it can automatically
optimize learners and estimate the performance of optimized models
with nested resampling.
Author: Marc Becker [cre, aut] ,
Michel Lang [aut] ,
Jakob Richter [aut] ,
Bernd Bischl [aut] ,
Daniel Schalk [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3tuning versions 1.5.1 dated 2025-12-14 and 1.6.0 dated 2026-03-16
mlr3tuning-1.5.1/mlr3tuning/man/mlr3tuning.asnyc_mlflow.Rd |only mlr3tuning-1.6.0/mlr3tuning/DESCRIPTION | 12 mlr3tuning-1.6.0/mlr3tuning/MD5 | 105 +-- mlr3tuning-1.6.0/mlr3tuning/NEWS.md | 15 mlr3tuning-1.6.0/mlr3tuning/R/ArchiveAsyncTuning.R | 7 mlr3tuning-1.6.0/mlr3tuning/R/ArchiveAsyncTuningFrozen.R | 5 mlr3tuning-1.6.0/mlr3tuning/R/ArchiveBatchTuning.R | 7 mlr3tuning-1.6.0/mlr3tuning/R/AutoTuner.R | 10 mlr3tuning-1.6.0/mlr3tuning/R/TunerBatchGridSearch.R | 2 mlr3tuning-1.6.0/mlr3tuning/R/TuningInstanceAsyncMulticrit.R | 1 mlr3tuning-1.6.0/mlr3tuning/R/TuningInstanceAsyncSingleCrit.R | 1 mlr3tuning-1.6.0/mlr3tuning/R/TuningInstanceBatchMulticrit.R | 1 mlr3tuning-1.6.0/mlr3tuning/R/TuningInstanceBatchSingleCrit.R | 12 mlr3tuning-1.6.0/mlr3tuning/R/mlr_callbacks.R | 10 mlr3tuning-1.6.0/mlr3tuning/R/tune.R | 1 mlr3tuning-1.6.0/mlr3tuning/inst/doc/extending.Rmd | 7 mlr3tuning-1.6.0/mlr3tuning/inst/doc/extending.html | 8 mlr3tuning-1.6.0/mlr3tuning/inst/testthat/helper_misc.R | 21 mlr3tuning-1.6.0/mlr3tuning/man/ArchiveAsyncTuning.Rd | 10 mlr3tuning-1.6.0/mlr3tuning/man/ArchiveAsyncTuningFrozen.Rd | 2 mlr3tuning-1.6.0/mlr3tuning/man/ArchiveBatchTuning.Rd | 10 mlr3tuning-1.6.0/mlr3tuning/man/AutoTuner.Rd | 6 mlr3tuning-1.6.0/mlr3tuning/man/TuningInstanceAsyncMultiCrit.Rd | 27 mlr3tuning-1.6.0/mlr3tuning/man/TuningInstanceAsyncSingleCrit.Rd | 27 mlr3tuning-1.6.0/mlr3tuning/man/TuningInstanceBatchMultiCrit.Rd | 27 mlr3tuning-1.6.0/mlr3tuning/man/TuningInstanceBatchSingleCrit.Rd | 27 mlr3tuning-1.6.0/mlr3tuning/man/TuningInstanceMultiCrit.Rd | 10 mlr3tuning-1.6.0/mlr3tuning/man/TuningInstanceSingleCrit.Rd | 10 mlr3tuning-1.6.0/mlr3tuning/man/auto_tuner.Rd | 6 mlr3tuning-1.6.0/mlr3tuning/man/figures |only mlr3tuning-1.6.0/mlr3tuning/man/mlr3tuning.async_mlflow.Rd |only mlr3tuning-1.6.0/mlr3tuning/man/mlr_tuners_design_points.Rd | 2 mlr3tuning-1.6.0/mlr3tuning/man/mlr_tuners_gensa.Rd | 2 mlr3tuning-1.6.0/mlr3tuning/man/mlr_tuners_grid_search.Rd | 4 mlr3tuning-1.6.0/mlr3tuning/man/mlr_tuners_random_search.Rd | 2 mlr3tuning-1.6.0/mlr3tuning/man/set_validate.AutoTuner.Rd | 2 mlr3tuning-1.6.0/mlr3tuning/man/ti.Rd | 6 mlr3tuning-1.6.0/mlr3tuning/man/ti_async.Rd | 6 mlr3tuning-1.6.0/mlr3tuning/man/tune.Rd | 20 mlr3tuning-1.6.0/mlr3tuning/man/tune_nested.Rd | 6 mlr3tuning-1.6.0/mlr3tuning/tests/testthat/helper_rush.R |only mlr3tuning-1.6.0/mlr3tuning/tests/testthat/test_ArchiveAsyncTuning.R | 153 ++--- mlr3tuning-1.6.0/mlr3tuning/tests/testthat/test_ArchiveAsyncTuningFrozen.R | 19 mlr3tuning-1.6.0/mlr3tuning/tests/testthat/test_AutoTuner.R | 16 mlr3tuning-1.6.0/mlr3tuning/tests/testthat/test_CallbackAsyncTuning.R | 276 ++++------ mlr3tuning-1.6.0/mlr3tuning/tests/testthat/test_TunerAsyncDesignPoints.R | 19 mlr3tuning-1.6.0/mlr3tuning/tests/testthat/test_TunerAsyncGridSearch.R | 19 mlr3tuning-1.6.0/mlr3tuning/tests/testthat/test_TunerAsyncRandomSearch.R | 21 mlr3tuning-1.6.0/mlr3tuning/tests/testthat/test_TunerBatchIrace.R | 2 mlr3tuning-1.6.0/mlr3tuning/tests/testthat/test_TuningInstanceAsyncMultiCrit.R | 162 ++--- mlr3tuning-1.6.0/mlr3tuning/tests/testthat/test_TuningInstanceAsyncSingleCrit.R | 183 ++---- mlr3tuning-1.6.0/mlr3tuning/tests/testthat/test_auto_tuner.R | 28 - mlr3tuning-1.6.0/mlr3tuning/tests/testthat/test_mlr_callbacks.R | 157 +++-- mlr3tuning-1.6.0/mlr3tuning/tests/testthat/test_ti_async.R | 19 mlr3tuning-1.6.0/mlr3tuning/vignettes/extending.Rmd | 7 55 files changed, 739 insertions(+), 779 deletions(-)
Title: Linear Test Statistics for Permutation Inference
Description: Basic infrastructure for linear test statistics and permutation
inference in the framework of Strasser and Weber (1999) <https://epub.wu.ac.at/102/>.
This package must not be used by end-users. CRAN package 'coin' implements all
user interfaces and is ready to be used by anyone.
Author: Torsten Hothorn [aut, cre] ,
Henric Winell [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between libcoin versions 1.0-11 dated 2026-03-06 and 1.0-12 dated 2026-03-16
DESCRIPTION | 8 MD5 | 16 build/partial.rdb |binary inst/NEWS.Rd | 6 inst/doc/libcoin.Rnw | 930 +++++++++++++++++++++++++------------------------- inst/doc/libcoin.pdf |binary inst/nuweb/libcoin.w | 53 ++ src/libcoin.c | 49 +- vignettes/libcoin.Rnw | 930 +++++++++++++++++++++++++------------------------- 9 files changed, 1048 insertions(+), 944 deletions(-)
Title: Treatment Effect Estimation for Time-to-Event Data with
Intercurrent Events
Description: Analysis of treatment effects in clinical trials with time-to-event outcomes is complicated by intercurrent events. This package implements methods for estimating and inferring the cumulative incidence functions for time-to-event (TTE) outcomes with intercurrent events (ICE) under the five strategies outlined in the ICH E9 (R1) addendum, see Deng (2025) <doi:10.1002/sim.70091>. This package can be used for analyzing data from both randomized controlled trials and observational studies. In general, the data involve a primary outcome event and, potentially, an intercurrent event. Two data structures are allowed: competing risks, where only the time to the first event is recorded, and semicompeting risks, where the times to both the primary outcome event and intercurrent event (or censoring) are recorded. For estimation methods, users can choose nonparametric estimation (which does not use covariates) and semiparametrically efficient estimation.
Author: Yuhao Deng [aut],
Yi Zhou [cre]
Maintainer: Yi Zhou <yzhou@pku.edu.cn>
Diff between tteICE versions 1.1.3 dated 2026-03-02 and 1.1.4 dated 2026-03-16
DESCRIPTION | 10 ++++---- MD5 | 51 ++++++++++++++++++++--------------------- R/basic.R | 11 +++----- R/bshaz_tteICE.R | 3 +- R/coef_tteICE.R | 6 +++- R/plot_tteICE.R | 3 +- R/predict_tteICE.R | 2 - R/print_summary_tteICE.R | 23 +++++++++++++++++- R/print_tteICE.R | 14 ++++------- R/summary_tteICE.R | 38 ++++++++++++++++++++++++++---- R/tteICE-package.R | 8 +++--- R/tteICE.R | 33 +++++++++++++------------- R/tteICEShiny.R | 5 +--- R/zph_tteICE.R | 12 +++------ inst/shiny/bmt-shiny-old.RData |only inst/shiny/bmt-shiny.RData |binary inst/tteICE.pdf |binary man/bshaz.tteICE.Rd | 3 +- man/coef.tteICE.Rd | 6 +++- man/plot.tteICE.Rd | 3 +- man/predict.tteICE.Rd | 2 - man/print.tteICE.Rd | 8 +++--- man/summary.tteICE.Rd | 6 +++- man/tteICE-package.Rd | 8 +++--- man/tteICE.Rd | 27 +++++++++++---------- man/tteICEShiny.Rd | 4 --- man/zph.tteICE.Rd | 12 +++------ 27 files changed, 171 insertions(+), 127 deletions(-)
Title: Create Tours in 'Shiny' Apps Using 'Shepherd.js'
Description: Enable the use of 'Shepherd.js' to create tours in 'Shiny'
applications.
Author: Etienne Bacher [aut, cre]
Maintainer: Etienne Bacher <etienne.bacher@protonmail.com>
Diff between conductor versions 0.1.1 dated 2022-08-28 and 0.1.2 dated 2026-03-16
DESCRIPTION | 10 LICENSE | 4 MD5 | 32 NAMESPACE | 18 NEWS.md | 31 R/conductor.R | 1391 +++++++++++++++++------------------ R/zzz.R | 8 README.md | 172 ++-- inst/packer/conductor.js | 2 inst/packer/conductor.js.LICENSE.txt | 2 man/Conductor.Rd | 1250 +++++++++++++++---------------- man/use_conductor.Rd | 56 - tests/testthat.R | 2 tests/testthat/_snaps/basic.md | 8 tests/testthat/setup.R | 4 tests/testthat/test-apps/basic/app.R | 62 - tests/testthat/test-basic.R | 44 - 17 files changed, 1571 insertions(+), 1525 deletions(-)
Title: Examples using 'RcppClassic' to Interface R and C++
Description: The 'Rcpp' package contains a C++ library that facilitates the
integration of R and C++ in various ways via a rich API. This API was
preceded by an earlier version which has been deprecated since 2010 (but is
still supported to provide backwards compatibility in the package
'RcppClassic'). This package 'RcppClassicExamples' provides usage examples for
the older, deprecated API. There is also a corresponding package
'RcppExamples' with examples for the newer, current API which we
strongly recommend as the basis for all new development.
Author: Dirk Eddelbuettel [aut, cre] ,
Romain Francois [aut] ,
Dominick Samperi [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppClassicExamples versions 0.1.3 dated 2023-11-30 and 0.1.4 dated 2026-03-16
ChangeLog | 49 +++++++++++++++++++++++++++++++++ DESCRIPTION | 24 ++++++++++------ MD5 | 20 ++++++------- inst/NEWS.Rd | 11 +++++++ src/Makevars | 2 - src/classicRcppDateExample.cpp | 4 +- src/classicRcppExample.cpp | 28 ++++-------------- src/classicRcppMatrixExample.cpp | 4 +- src/classicRcppParamsExample.cpp | 4 +- src/classicRcppStringVectorExample.cpp | 4 +- src/classicRcppVectorExample.cpp | 4 +- 11 files changed, 102 insertions(+), 52 deletions(-)
More information about RcppClassicExamples at CRAN
Permanent link
Title: 'Global Data Lab' R API
Description: Retrieve datasets from the 'Global Data Lab' website <https://globaldatalab.org>
directly into R data frames. Functions are provided to reference available options
(indicators, levels, countries, regions) as well.
Author: Global Data Lab [cph],
Aaron van Geffen [aut, cre]
Maintainer: Aaron van Geffen <aaron.vangeffen@ru.nl>
Diff between gdldata versions 0.2 dated 2025-09-01 and 0.3 dated 2026-03-16
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/gdl_session.R | 5 +++++ R/setter_funcs.R | 2 +- 5 files changed, 18 insertions(+), 8 deletions(-)
Title: Data-Driven Locally Weighted Regression for Trend and
Seasonality in TS
Description: Various methods for the identification of trend and seasonal
components in time series (TS) are provided. Among them is a data-driven locally
weighted regression approach with automatically selected bandwidth for
equidistant short-memory time series. The approach is a
combination / extension of the algorithms by
Feng (2013) <doi:10.1080/02664763.2012.740626> and Feng, Y., Gries, T.,
and Fritz, M. (2020) <doi:10.1080/10485252.2020.1759598> and a brief
description of this new method is provided in the package documentation.
Furthermore, the package allows its users to apply the base model of the
Berlin procedure, version 4.1, as described in Speth (2004) <https://www.destatis.de/DE/Methoden/Saisonbereinigung/BV41-methodenbericht-Heft3_2004.pdf?__blob=publicationFile>.
Permission to include this procedure was kindly provided by the Federal
Statistical Office of Germany.
Author: Yuanhua Feng [aut] ,
Dominik Schulz [aut, cre]
Maintainer: Dominik Schulz <dominik.schulz@uni-paderborn.de>
Diff between deseats versions 1.1.1 dated 2025-06-23 and 1.1.2 dated 2026-03-16
DESCRIPTION | 11 - MD5 | 77 +++++---- NAMESPACE | 2 NEWS.md | 24 +++ R/RcppExports.R | 16 +- R/class-deseats.R | 86 ++++++++-- R/class-deseats_fc.R | 7 R/class-s_semiarma.R | 48 +++++- R/class-smoothing_options.R | 14 - R/deseats-package.R | 4 R/fitting_functions.R | 70 ++++++-- R/forecasting_functions.R | 9 - R/gain_function.R | 183 ++++++++++++++++++++--- R/helper_functions.R | 17 +- R/runDecomposition.R | 41 +++++ R/seasonplot.R | 4 README.md | 22 +- build |only inst/doc |only man/create.gain.Rd | 2 man/create_gain.Rd |only man/deseats.Rd | 8 - man/expo-deseats_fc-method.Rd | 7 man/figures/README-example-1.png |binary man/figures/README-example2-1.png |binary man/figures/README-example4-1.png |binary man/figures/README-example5-1.png |binary man/plot-decomp-method.Rd | 130 ++++++++-------- man/plot-deseats_fc-method.Rd | 88 +++++------ man/plot-hfilter-method.Rd | 82 +++++----- man/predict-s_semiarma-method.Rd | 20 ++ man/runDecomposition.Rd | 4 man/run_decomposition.Rd |only man/s_semiarma.Rd | 8 - man/seasonplot_gg.Rd | 4 man/select_bwidth.Rd | 8 - man/set_options.Rd | 10 - src/RcppExports.cpp | 36 ++-- src/deseatsCpp.cpp | 56 ++++--- tests/testthat/test-Cpp_arma_related_functions.R | 16 +- vignettes |only 41 files changed, 772 insertions(+), 342 deletions(-)
Title: Sample Size and Power Calculation for Bayesian Testing with
Bayes Factor
Description: The goal of 'BayesPower' is to provide tools for Bayesian sample size determination and power analysis across a range of common hypothesis testing scenarios using Bayes factors. The main function, BayesPower_BayesFactor(), launches an interactive 'shiny' application for performing these analyses. The application also provides command-line code for reproducibility. Details of the methods are described in the tutorial by Wong, Pawel, and Tendeiro (2025) <doi:10.31234/osf.io/pgdac_v3>.
Author: Tsz Keung Wong [aut, cre],
Samuel Pawel [aut],
Jorge Tendeiro [aut]
Maintainer: Tsz Keung Wong <t.k.wong3004@gmail.com>
Diff between BayesPower versions 1.0.2 dated 2026-02-12 and 1.0.3 dated 2026-03-16
DESCRIPTION | 10 MD5 | 53 NAMESPACE | 18 R/BF_S3class.r | 1995 ++----- R/BF_app_backend.R | 9674 ++++++++++++++++++----------------- R/BF_app_frontend.r | 117 R/BF_app_helpers.r | 744 +- R/BF_pval.r | 32 R/BF_users_functions.r | 829 +- inst/report_templates/report_bin.Rmd | 26 inst/report_templates/report_f.Rmd | 6 inst/report_templates/report_r.Rmd | 28 inst/report_templates/report_t1.Rmd | 16 inst/report_templates/report_t2.Rmd | 26 man/BF10.bin.test.Rd | 11 man/BF10.cor.Rd | 7 man/BF10.f.test.Rd | 17 man/BF10.props.Rd | 14 man/BF10.ttest.OneSample.Rd | 52 man/BF10.ttest.TwoSample.Rd | 37 man/BFpower.bin.Rd | 39 man/BFpower.cor.Rd | 46 man/BFpower.f.test.Rd | 45 man/BFpower.props.Rd | 58 man/BFpower.ttest.OneSample.Rd | 49 man/BFpower.ttest.TwoSample.Rd | 49 man/plot.BFpower.Rd |only man/print.BFpower.Rd |only man/print.BFvalue.Rd |only 29 files changed, 6847 insertions(+), 7151 deletions(-)
Title: Load Configuration Values
Description: A simple approach to configuring R projects with different
parameter values. Configurations are specified using a reduced subset of base
R and parsed accordingly.
Author: Tim Taylor [aut, cre, cph]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between ronfig versions 0.0.8 dated 2026-01-12 and 0.0.9 dated 2026-03-16
ronfig-0.0.8/ronfig/inst/doc/ronfig.qmd |only ronfig-0.0.8/ronfig/vignettes/ronfig.qmd |only ronfig-0.0.9/ronfig/DESCRIPTION | 10 ronfig-0.0.9/ronfig/MD5 | 24 ronfig-0.0.9/ronfig/NEWS.md | 11 ronfig-0.0.9/ronfig/R/load_config.R | 30 ronfig-0.0.9/ronfig/README.md |only ronfig-0.0.9/ronfig/build/vignette.rds |binary ronfig-0.0.9/ronfig/inst/doc/ronfig.R | 11 ronfig-0.0.9/ronfig/inst/doc/ronfig.Rmd |only ronfig-0.0.9/ronfig/inst/doc/ronfig.html | 527 +++++---------- ronfig-0.0.9/ronfig/man/load_config.Rd | 13 ronfig-0.0.9/ronfig/tests/testthat/_snaps/load_config.md | 9 ronfig-0.0.9/ronfig/tests/testthat/test-load_config.R | 43 + ronfig-0.0.9/ronfig/vignettes/assets |only ronfig-0.0.9/ronfig/vignettes/ronfig.Rmd |only 16 files changed, 317 insertions(+), 361 deletions(-)
Title: Interface to the ITALIC Database of Lichen Biodiversity
Description: A programmatic interface to the Web Service methods provided by ITALIC (<https://italic.units.it>).
ITALIC is a database of lichen data in Italy and bordering European countries. 'ritalic' includes functions for retrieving information
about lichen scientific names, geographic distribution, ecological data, morpho-functional traits and identification keys.
More information about the data is available at <https://italic.units.it/?procedure=base&t=59&c=60>.
The API documentation is available at <https://italic.units.it/?procedure=api>.
Author: Matteo Conti [aut, cre] ,
Luana Francesconi [aut],
Alice Musina [aut],
Luca Di Nuzzo [aut],
Gabriele Gheza [aut],
Chiara Pistocchi [aut],
Juri Nascimbene [aut],
Pier Luigi Nimis [aut],
Stefano Martellos [aut]
Maintainer: Matteo Conti <matt.ciao@gmail.com>
Diff between ritalic versions 0.11.0 dated 2025-03-30 and 0.12.0 dated 2026-03-16
DESCRIPTION | 11 ++++---- MD5 | 27 +++++++++++---------- NAMESPACE | 6 ---- R/api_utils.R | 33 +++++++++++--------------- R/italic_checklist.R | 12 ++++----- R/italic_distribution_map.R | 43 ++++++++++++++++++++++------------ R/italic_ecoregions_distribution.R | 2 - R/italic_identification_key.R | 19 ++++++--------- R/italic_match.R | 2 - R/italic_name_usage.R | 2 - R/italic_occurrences.R | 2 - R/italic_occurrences_references.R | 2 - build |only man/italic_distribution_map.Rd | 9 ++++--- man/italic_ecoregions_distribution.Rd | 2 - 15 files changed, 89 insertions(+), 83 deletions(-)
Title: Hedonic and Multilateral Index Methods for Real Estate Price
Statistics
Description: Compute price indices using various Hedonic and
multilateral methods, including Laspeyres, Paasche, Fisher, and HMTS (Hedonic
Multilateral Time series re-estimation with splicing). The central function
calculate_hedonic_index() offers a unified interface for running these methods
on structured datasets. This package is designed to support index construction workflows across a wide range of domains
— including but not limited to real estate — where quality-adjusted price comparisons over time are essential.
The development of this package was funded by Eurostat and Statistics Netherlands (CBS), and carried out by Statistics Netherlands.
The HMTS method implemented here is described in Ishaak, Ouwehand and Remøy (2024)
<doi:10.1177/0282423X241246617>. For broader methodological context, see Eurostat
(2013, ISBN:978-92-79-25984-5, <doi:10.2785/34007>).
Author: Farley Ishaak [aut],
Pim Ouwehand [aut],
David Pietersz [aut],
Liu Nuo Su [aut],
Cynthia Cao [aut],
Mohammed Kardal [aut],
Odens van der Zwan [aut],
Vivek Gajadhar [aut, cre]
Maintainer: Vivek Gajadhar <v.gajadhar@cbs.nl>
Diff between REPS versions 1.0.0 dated 2025-07-30 and 1.1.0 dated 2026-03-16
REPS-1.0.0/REPS/R/calculate_price_index.R |only REPS-1.0.0/REPS/tests/testthat/test-calculate_price_index.R |only REPS-1.1.0/REPS/DESCRIPTION | 8 REPS-1.1.0/REPS/MD5 | 41 ++- REPS-1.1.0/REPS/NAMESPACE | 73 +++--- REPS-1.1.0/REPS/NEWS.md | 70 ------ REPS-1.1.0/REPS/R/calculate_hedonic_index.R |only REPS-1.1.0/REPS/R/calculate_rolling_timedummy.R | 22 +- REPS-1.1.0/REPS/R/calculate_timedummy.R | 21 -- REPS-1.1.0/REPS/R/deprecated.R |only REPS-1.1.0/REPS/R/hmts_helpers.R | 88 ++++---- REPS-1.1.0/REPS/README.md | 8 REPS-1.1.0/REPS/inst/doc/calculate_price_index.R | 4 REPS-1.1.0/REPS/inst/doc/calculate_price_index.Rmd | 12 - REPS-1.1.0/REPS/inst/doc/calculate_price_index.html | 41 ++- REPS-1.1.0/REPS/inst/doc/calculate_regression_diagnostics.html | 5 REPS-1.1.0/REPS/man/REPS-package.Rd | 68 +++--- REPS-1.1.0/REPS/man/calculate_hedonic_index.Rd |only REPS-1.1.0/REPS/man/calculate_price_index.Rd | 105 +--------- REPS-1.1.0/REPS/man/figures |only REPS-1.1.0/REPS/man/plot_price_index.Rd | 6 REPS-1.1.0/REPS/tests/testthat/test-calculate_hedonic_index.R |only REPS-1.1.0/REPS/tests/testthat/test_data/rolling_timedummy_output.rds |binary REPS-1.1.0/REPS/tests/testthat/test_data/timedummy_output.rds |binary REPS-1.1.0/REPS/vignettes/calculate_price_index.Rmd | 12 - 25 files changed, 238 insertions(+), 346 deletions(-)
Title: Benchmark for Publication Bias Correction Methods
Description: Implements a unified interface for benchmarking meta-analytic
publication bias correction methods through simulation studies (see
Bartoš et al., 2025, <doi:10.48550/arXiv.2510.19489>). It provides
1) predefined data-generating mechanisms from the literature, 2) functions
for running meta-analytic methods on simulated data, 3) pre-simulated
datasets and pre-computed results for reproducible benchmarks, 4) tools for
visualizing and comparing method performance.
Author: Frantisek Bartos [aut, cre] ,
Samuel Pawel [aut] ,
Bjoern S. Siepe [aut] ,
Petr Čala [aut]
Maintainer: Frantisek Bartos <f.bartos96@gmail.com>
Diff between PublicationBiasBenchmark versions 0.1.3 dated 2025-12-05 and 0.2.0 dated 2026-03-16
DESCRIPTION | 16 ++-- MD5 | 128 ++++++++++++++++---------------- NAMESPACE | 3 NEWS.md | 6 + R/dgm-Alinaghi2018.R | 2 R/dgm-Bom2019.R | 2 R/dgm-Carter2019.R | 2 R/dgm-Stanley2017.R | 2 R/dgm-no_bias.R | 2 R/download.R | 8 +- R/measures_compute.R | 3 R/method-AK.R | 2 R/method-EK.R | 2 R/method-FMA.R | 2 R/method-MAIVE.R |only R/method-PEESE.R | 2 R/method-PET.R | 2 R/method-PETPEESE.R | 2 R/method-RMA.R | 2 R/method-RoBMA.R | 2 R/method-SM.R | 2 R/method-WAAPWLS.R | 2 R/method-WILS.R | 2 R/method-WLS.R | 2 R/method-mean.R | 2 R/method-pcurve.R | 2 R/method-puniform.R | 2 R/method-trimfill.R | 2 README.md | 11 ++ build/partial.rdb |binary inst/CITATION | 4 - inst/REFERENCES.bib | 9 ++ man/PublicationBiasBenchmark-package.Rd | 1 man/compute_measures.Rd | 3 man/create_empty_result.Rd | 42 +++++----- man/dgm.Alinaghi2018.Rd | 3 man/dgm.Bom2019.Rd | 3 man/dgm.Carter2019.Rd | 3 man/dgm.Stanley2017.Rd | 3 man/dgm.no_bias.Rd | 3 man/download_dgm.Rd | 2 man/measure.Rd | 40 +++++----- man/measure_mcse.Rd | 40 +++++----- man/method.AK.Rd | 111 ++++++++++++++------------- man/method.EK.Rd | 93 ++++++++++++----------- man/method.FMA.Rd | 93 ++++++++++++----------- man/method.MAIVE.Rd |only man/method.PEESE.Rd | 83 ++++++++++---------- man/method.PET.Rd | 83 ++++++++++---------- man/method.PETPEESE.Rd | 101 +++++++++++++------------ man/method.RMA.Rd | 101 +++++++++++++------------ man/method.RoBMA.Rd | 3 man/method.SM.Rd | 3 man/method.WAAPWLS.Rd | 85 +++++++++++---------- man/method.WILS.Rd | 103 +++++++++++++------------ man/method.WLS.Rd | 81 ++++++++++---------- man/method.mean.Rd | 3 man/method.pcurve.Rd | 101 +++++++++++++------------ man/method.puniform.Rd | 99 ++++++++++++------------ man/method.trimfill.Rd | 95 ++++++++++++----------- man/method_extra_columns.Rd | 86 ++++++++++----------- man/method_settings.Rd | 58 +++++++------- man/retrieve_dgm_dataset.Rd | 2 man/retrieve_dgm_measures.Rd | 2 man/retrieve_dgm_results.Rd | 2 man/validate_dgm_setting.Rd | 72 +++++++++--------- 66 files changed, 987 insertions(+), 846 deletions(-)
More information about PublicationBiasBenchmark at CRAN
Permanent link
Title: Tools for Wikidata and Wikipedia
Description: A set of wrappers intended to check, read and download information from the Wikimedia sources. It is specifically created to work with names of celebrities, in which case their information and statistics can be downloaded. Additionally, it also builds links and snippets to use in combination with the function gallery() in netCoin package.
Author: Modesto Escobar [aut, cph, cre] ,
Angel Zazo [aut],
Carlos Prieto [aut] ,
David Barrios [aut],
Cristina Calvo [aut]
Maintainer: Modesto Escobar <modesto@usal.es>
Diff between wikiTools versions 1.2.15 dated 2025-10-18 and 1.2.21 dated 2026-03-16
DESCRIPTION | 10 +- MD5 | 14 +-- R/w_Exhibit.R | 198 ++++++++++++++++++++++++++++++++++++++++------- R/wiki_utils.R | 28 +++++- build/vignette.rds |binary inst/doc/wiki_utils.html | 22 ++--- man/pop_up.Rd | 6 + man/w_Exhibit.Rd | 9 +- 8 files changed, 230 insertions(+), 57 deletions(-)
Title: Time-Varying Coefficient for Single and Multi-Equation
Regressions
Description: Fitting time-varying coefficient models for single and multi-equation regressions, using kernel smoothing techniques.
Author: Isabel Casas [aut, cre],
Ruben Fernandez-Casal [aut]
Maintainer: Isabel Casas <casasis@gmail.com>
Diff between tvReg versions 0.5.10 dated 2026-03-12 and 0.5.11 dated 2026-03-16
DESCRIPTION | 6 MD5 | 14 NEWS.md | 7 R/plot_tvReg.R | 856 +++++++++++++++++++++++++++------------------------- inst/doc/tvReg.R | 1 inst/doc/tvReg.Rmd | 1 inst/doc/tvReg.html | 37 +- vignettes/tvReg.Rmd | 1 8 files changed, 496 insertions(+), 427 deletions(-)
Title: BDEW Standard Load Profiles for Electricity
Description: Provides representative standard load profiles (SLPs) for
electricity published by the German Association of Energy and Water
Industries (BDEW Bundesverband der Energie- und Wasserwirtschaft e.V.)
in a tidy format. Covers the 1999 profiles — households (H0), commerce
(G0–G6), and agriculture (L0–L2) — and the updated 2025 profiles (H25,
G25, L25, P25, S25), which additionally represent households with
photovoltaic systems and battery storage. Also provides an interface for
generating a standard load profile over a user-defined date range.
The 1999 data and methodology are described in VDEW (1999),
"Repräsentative VDEW-Lastprofile",
<https://www.bdew.de/media/documents/1999_Repraesentative-VDEW-Lastprofile.pdf>.
The generation algorithm is described in VDEW (2000), "Anwendung der
Repräsentativen VDEW-Lastprofile step-by-step",
<https://www.bdew.de/media/documents/2000131_Anwendung-repraesentativen_Lastprofile-Step-by-step.pdf>.
The 2025 profiles are described in BDEW (2025), [...truncated...]
Author: Markus Doering [aut, cre, cph]
Maintainer: Markus Doering <m4rkus.doering@gmail.com>
Diff between standardlastprofile versions 1.0.0 dated 2023-12-11 and 1.1.0 dated 2026-03-16
standardlastprofile-1.0.0/standardlastprofile/inst/doc/algorithm-step-by-step.R |only standardlastprofile-1.0.0/standardlastprofile/inst/doc/algorithm-step-by-step.Rmd |only standardlastprofile-1.0.0/standardlastprofile/inst/doc/algorithm-step-by-step.html |only standardlastprofile-1.0.0/standardlastprofile/inst/extdata/representative_profiles.xls |only standardlastprofile-1.0.0/standardlastprofile/vignettes/algorithm-step-by-step.Rmd |only standardlastprofile-1.1.0/standardlastprofile/DESCRIPTION | 38 standardlastprofile-1.1.0/standardlastprofile/MD5 | 79 + standardlastprofile-1.1.0/standardlastprofile/NAMESPACE | 1 standardlastprofile-1.1.0/standardlastprofile/NEWS.md | 31 standardlastprofile-1.1.0/standardlastprofile/R/data.R | 73 + standardlastprofile-1.1.0/standardlastprofile/R/plots.R |only standardlastprofile-1.1.0/standardlastprofile/R/slp_generate.R | 403 +++++++--- standardlastprofile-1.1.0/standardlastprofile/R/slp_info.R | 11 standardlastprofile-1.1.0/standardlastprofile/R/sysdata.rda |binary standardlastprofile-1.1.0/standardlastprofile/R/utils.R | 207 +++-- standardlastprofile-1.1.0/standardlastprofile/README.md | 227 ++++- standardlastprofile-1.1.0/standardlastprofile/build/vignette.rds |binary standardlastprofile-1.1.0/standardlastprofile/data/slp.rda |binary standardlastprofile-1.1.0/standardlastprofile/inst/WORDLIST |only standardlastprofile-1.1.0/standardlastprofile/inst/doc/standardlastprofile.R |only standardlastprofile-1.1.0/standardlastprofile/inst/doc/standardlastprofile.Rmd |only standardlastprofile-1.1.0/standardlastprofile/inst/doc/standardlastprofile.html |only standardlastprofile-1.1.0/standardlastprofile/inst/extdata/BDEW_H0_G0_G1_G2_G3_G4_G5_G6_L0_L1_L2.xls |only standardlastprofile-1.1.0/standardlastprofile/inst/extdata/BDEW_H25_G25_L25_P25_S25.xlsx |only standardlastprofile-1.1.0/standardlastprofile/man/figures/README-G5_plot_readme-1.png |binary standardlastprofile-1.1.0/standardlastprofile/man/figures/README-H0_vs_2025-1.png |only standardlastprofile-1.1.0/standardlastprofile/man/figures/README-bdew-1999-small_multiples-1.png |only standardlastprofile-1.1.0/standardlastprofile/man/figures/README-bdew-2025-small_multiples-1.png |only standardlastprofile-1.1.0/standardlastprofile/man/figures/README-slp_2025-1.png |only standardlastprofile-1.1.0/standardlastprofile/man/figures/README-small_multiples-1.png |binary standardlastprofile-1.1.0/standardlastprofile/man/figures/lifecycle-deprecated.svg |only standardlastprofile-1.1.0/standardlastprofile/man/slp.Rd | 56 + standardlastprofile-1.1.0/standardlastprofile/man/slp_generate.Rd | 219 +++-- standardlastprofile-1.1.0/standardlastprofile/man/slp_info.Rd | 6 standardlastprofile-1.1.0/standardlastprofile/man/standardlastprofile-package.Rd | 4 standardlastprofile-1.1.0/standardlastprofile/tests/testthat/_snaps/readme/readme-example-g5.svg | 62 - standardlastprofile-1.1.0/standardlastprofile/tests/testthat/_snaps/readme/readme-example-small-multiples.svg | 13 standardlastprofile-1.1.0/standardlastprofile/tests/testthat/_snaps/vignette_examples/vignetee-example-h0.svg | 46 - standardlastprofile-1.1.0/standardlastprofile/tests/testthat/_snaps/vignette_examples/vignette-example-h0-dynamic.svg |only standardlastprofile-1.1.0/standardlastprofile/tests/testthat/test-get_daily_sequence.R | 6 standardlastprofile-1.1.0/standardlastprofile/tests/testthat/test-get_holidays.R | 5 standardlastprofile-1.1.0/standardlastprofile/tests/testthat/test-get_period.R | 10 standardlastprofile-1.1.0/standardlastprofile/tests/testthat/test-get_weekday.R | 48 - standardlastprofile-1.1.0/standardlastprofile/tests/testthat/test-get_wkday_period.R | 10 standardlastprofile-1.1.0/standardlastprofile/tests/testthat/test-match_profile.R | 5 standardlastprofile-1.1.0/standardlastprofile/tests/testthat/test-readme.R | 82 +- standardlastprofile-1.1.0/standardlastprofile/tests/testthat/test-slp_generate.R | 223 +++++ standardlastprofile-1.1.0/standardlastprofile/tests/testthat/test-slp_info.R | 161 ++- standardlastprofile-1.1.0/standardlastprofile/tests/testthat/test-vignette_examples.R | 131 ++- standardlastprofile-1.1.0/standardlastprofile/vignettes/standardlastprofile.Rmd |only 50 files changed, 1574 insertions(+), 583 deletions(-)
More information about standardlastprofile at CRAN
Permanent link
Title: Mixture Hidden Markov Models for Social Sequence Data and Other
Multivariate, Multichannel Categorical Time Series
Description: Designed for estimating variants of hidden (latent) Markov models
(HMMs), mixture HMMs, and non-homogeneous HMMs (NHMMs) for social sequence
data and other categorical time series. Special cases include
feedback-augmented NHMMs, Markov models without latent layer, mixture
Markov models, and latent class models. The package supports models for one
or multiple subjects with one or multiple parallel sequences (channels).
External covariates can be added to explain cluster membership in mixture
models as well as initial, transition and emission probabilities in NHMMs.
The package provides functions for evaluating and comparing models, as well
as functions for visualizing of multichannel sequence data and HMMs. For
NHMMs, methods for computing average causal effects and marginal state and
emission probabilities are available. Models are estimated using maximum
likelihood via the EM algorithm or direct numerical maximization with
analytical gradients. Documentation is available via several v [...truncated...]
Author: Jouni Helske [aut, cre] ,
Satu Helske [aut]
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between seqHMM versions 2.1.0 dated 2025-09-25 and 2.2.0 dated 2026-03-16
DESCRIPTION | 8 MD5 | 151 +++---- NAMESPACE | 1 NEWS.md | 23 + R/RcppExports.R | 32 + R/check_build_arguments.R | 5 R/coef.R | 2 R/create_base_nhmm.R | 35 + R/em_dnm_mnhmm.R | 24 - R/em_dnm_nhmm.R | 12 R/em_mnhmm.R | 12 R/em_nhmm.R | 12 R/estimate_mnhmm.R | 15 R/estimate_nhmm.R | 38 + R/fanhmm_leaves.R | 10 R/fit_mnhmm.R | 9 R/fit_model.R | 4 R/fit_nhmm.R | 9 R/get_marginals.R | 54 ++ R/get_probs.R | 165 ++++++-- R/model_matrix.R | 68 +-- R/most_probable_cluster.R | 4 R/posterior_probs.R | 85 +++- R/separate_mhmm.R | 2 R/seqHMM-package.R | 2 R/simulate_mnhmm.R | 8 R/simulate_nhmm.R | 9 R/sort_sequences.R | 9 R/stacked_sequence_plot.R | 45 +- R/stslist_to_data.R | 27 + R/summary.mhmm.R | 22 - R/summary.mnhmm.R | 24 - R/update.R | 74 +-- R/utilities.R | 5 build/vignette.rds |binary inst/doc/seqHMM.pdf |binary inst/doc/seqHMM_algorithms.pdf |binary inst/doc/seqHMM_estimation.pdf |binary inst/doc/seqHMM_visualization.pdf |binary man/cluster_probs.Rd | 25 + man/data_to_stslist.Rd | 18 man/emission_probs.Rd | 17 man/estimate_mnhmm.Rd | 15 man/estimate_nhmm.Rd | 32 + man/fit_model.Rd | 4 man/initial_probs.Rd | 21 - man/leaves.Rd | 9 man/separate_mhmm.Rd | 2 man/simulate_mnhmm.Rd | 8 man/simulate_nhmm.Rd | 8 man/sort_sequences.Rd | 5 man/stacked_sequence_plot.Rd | 11 man/transition_probs.Rd | 17 man/update_nhmm.Rd | 8 src/EM_mnhmm.cpp | 557 ++++++++++++++++++---------- src/EM_mnhmm.h | 26 - src/EM_nhmm.cpp | 425 ++++++++++++++------- src/EM_nhmm.h | 28 - src/R_EM_fanhmm.cpp | 9 src/R_EM_mfanhmm.cpp | 9 src/R_EM_mnhmm.cpp | 9 src/R_EM_nhmm.cpp | 9 src/R_posterior_probs_fanhmm.cpp |only src/R_posterior_probs_mfanhmm.cpp |only src/R_posterior_probs_mnhmm.cpp |only src/R_posterior_probs_nhmm.cpp |only src/RcppExports.cpp | 170 +++++++- src/forward.h | 11 src/mnhmm.cpp | 62 ++- src/mnhmm.h | 2 src/nhmm.cpp | 44 +- src/nhmm.h | 2 tests/testthat/test-build_mnhmm.R | 2 tests/testthat/test-ivX_and_tvX.R | 170 +++++++- tests/testthat/test-posterior_probs.R | 4 tests/testthat/test-squarem.R |only tests/testthat/test-stacked_sequence_plot.R | 2 vignettes/references.bib | 18 vignettes/references_for_vignettes.bib | 20 - 79 files changed, 1918 insertions(+), 866 deletions(-)
Title: Data Package of Portland, Oregon Trees
Description: An engaging collection of datasets from Portland Parks and Recreation. The city of Portland inventoried every tree in over 170 parks and along the streets in 96 neighborhoods.
Author: Kelly McConville [aut, cre],
Isabelle Caldwell [aut],
OR City of Portland [cph],
Nicholas Horton [ctb]
Maintainer: Kelly McConville <k.mcconville@bucknell.edu>
This is a re-admission after prior archival of version 0.5.0 dated 2026-01-16
Diff between pdxTrees versions 0.5.0 dated 2026-01-16 and 0.5.1 dated 2026-03-16
DESCRIPTION | 10 +-- MD5 | 14 ++-- README.md | 11 --- build/vignette.rds |binary inst/doc/pdxTrees-vignette.R | 55 ------------------ inst/doc/pdxTrees-vignette.Rmd | 70 ------------------------ inst/doc/pdxTrees-vignette.html | 116 ++++++++++------------------------------ vignettes/pdxTrees-vignette.Rmd | 70 ------------------------ 8 files changed, 48 insertions(+), 298 deletions(-)
Title: Visualisation and Annotation of 360 Degree Imagery
Description: Provides a customisable R 'shiny' app for immersively
visualising, mapping and annotating panospheric (360 degree) imagery.
The flexible interface allows annotation of any geocoded images using
up to 4 user specified drop-down menus. The app uses 'leaflet' to
render maps that display the geo-locations of images and Panellum
<https://pannellum.org/>, a lightweight panorama viewer for the web,
to render images in virtual 360 degree viewing mode. Key functions
include the ability to draw on & export parts of 360 images for
downstream applications. Users can also draw polygons and points on
map imagery related to the panoramic images and export them for
further analysis. Downstream applications include using annotations to
train Artificial Intelligence/Machine Learning (AI/ML) models and
geospatial modelling and analysis of camera based survey data.
Author: Nunzio Knerr [aut, cre] ,
Robert Godfree [aut] ,
Matthew Petroff [ctb],
CSIRO [cph]
Maintainer: Nunzio Knerr <Nunzio.Knerr@csiro.au>
This is a re-admission after prior archival of version 1.0.0.4 dated 2024-11-11
Diff between pannotator versions 1.0.0.4 dated 2024-11-11 and 1.0.1 dated 2026-03-16
DESCRIPTION | 24 - MD5 | 28 +- NEWS.md | 9 R/app_ui.R | 260 +++++++++---------- R/fct_helpers.R | 357 +++++++++++++++++++------- R/mod_360_image.R | 638 +++++++++++++++++++++++------------------------ R/mod_control_form.R | 92 +----- R/mod_leaflet_map.R | 112 ++++---- README.md | 234 +++++++---------- inst/WORDLIST | 52 +++ inst/doc/pannotator.R | 114 ++++---- inst/doc/pannotator.Rmd | 2 inst/doc/pannotator.html | 7 inst/golem-config.yml | 2 vignettes/pannotator.Rmd | 2 15 files changed, 1054 insertions(+), 879 deletions(-)
Title: Visualizing Pedigrees with 'ggplot2' and 'plotly'
Description: Provides plotting functions for visualizing pedigrees and family trees. The package complements a behavior genetics package 'BGmisc' [Garrison et al. (2024) <doi:10.21105/joss.06203>] by rendering pedigrees using the 'ggplot2' framework. Features include support for duplicated individuals, complex mating structures, integration with simulated pedigrees, and layout customization. Due to the impending deprecation of kinship2, version 1.0 incorporates the layout helper functions from kinship2. The pedigree alignment algorithms are adapted from 'kinship2' [Sinnwell et al. (2014) <doi:10.1159/000363105>]. We gratefully acknowledge the original authors: Jason Sinnwell, Terry Therneau, Daniel Schaid, and Elizabeth Atkinson for their foundational work.
Author: S. Mason Garrison [aut, cre, cph]
Maintainer: S. Mason Garrison <garrissm@wfu.edu>
Diff between ggpedigree versions 1.1.1.0.0 dated 2026-03-13 and 1.1.1.1 dated 2026-03-16
DESCRIPTION | 6 MD5 | 38 - NEWS.md | 3 R/buildPlotConfig.R | 2 R/defaultPlotConfig.R | 6 R/ggPedigreeInteractive.R | 24 R/ggPhenotypeByDegree.R | 4 R/ggpedigree.R | 4 R/ggpedigreeCore.R | 10 R/ggpedigreeCoreHelpers.R | 20 R/kinship2_pedigree.R | 4 inst/doc/v20_interactiveplots.R | 13 inst/doc/v20_interactiveplots.Rmd | 13 inst/doc/v20_interactiveplots.html | 4 inst/doc/v30_matrix.R | 11 inst/doc/v30_matrix.Rmd | 11 inst/doc/v30_matrix.html | 4 tests/testthat/test-kinship2_pedigrees.R | 785 +++++++++++++++++++++++++++++++ vignettes/v20_interactiveplots.Rmd | 13 vignettes/v30_matrix.Rmd | 11 20 files changed, 880 insertions(+), 106 deletions(-)
Title: Performs Tests for Cluster Tendency of a Data Set
Description: Test for cluster tendency (clusterability) of a data set.
The methods implemented - reducing the data set to a single dimension using principal component analysis or computing
pairwise distances, and performing a multimodality test like the Dip Test or Silverman's Critical Bandwidth Test -
are described in Adolfsson, Ackerman, and Brownstein (2019) <doi:10.1016/j.patcog.2018.10.026> and Laborde et al. (2023) <doi: 10.1186/s12859-023-05210-6>. Such methods can inform whether clustering algorithms
are appropriate for a data set.
Author: Zachariah Neville [aut, cre],
Naomi Brownstein [aut],
Maya Ackerman [aut],
Andreas Adolfsson [aut]
Maintainer: Zachariah Neville <zachariahneville@outlook.com>
Diff between clusterability versions 0.2.2.0 dated 2026-01-12 and 0.2.3.0 dated 2026-03-16
DESCRIPTION | 10 +- MD5 | 26 +++---- NEWS.md | 3 R/clusterabilitytest.R | 33 ++++----- R/data_standardization.R | 21 ++++++ R/dimension_reduction.R | 39 ++++------- R/input_validation.R | 28 ++++++-- README.md | 2 inst/doc/examples_performance_testing.R | 13 +++ inst/doc/examples_plots.R | 7 ++ man/clusterabilitytest.Rd | 4 - tests/testthat/test_clusterabilitytest.R | 103 ++++++++++++++++++++++++++++++ tests/testthat/test_dimension_reduction.R | 11 ++- tests/testthat/test_input_validation.R | 25 ++++--- 14 files changed, 247 insertions(+), 78 deletions(-)
More information about clusterability at CRAN
Permanent link
Title: Custom Legends with Statistical Comparison Brackets
Description: Add publication-quality custom legends with vertical brackets. Designed for displaying statistical comparisons between groups,
commonly used in scientific publications for showing significance levels.
Features include adaptive positioning, automatic bracket spacing for overlapping
comparisons, font family inheritance, and support for asterisks, p-values,
or custom labels. Compatible with 'ggplot2' graphics.
Author: Yoshiaki Sato [aut, cre]
Maintainer: Yoshiaki Sato <lascia333@gmail.com>
Diff between vbracket versions 1.1.0 dated 2026-01-23 and 1.3.0 dated 2026-03-16
DESCRIPTION | 10 +- MD5 | 15 ++-- NEWS.md |only R/annotation_grob.R | 129 +++++++++++++++++++---------------- R/custom_legend_with_brackets.R | 97 ++++++++++++-------------- R/ggplot_integration.R | 48 +++++++++---- man/create_annotation_legend_grob.Rd | 6 + man/draw_legend_with_brackets.Rd | 14 +++ man/legend_bracket.Rd | 14 +++ 9 files changed, 196 insertions(+), 137 deletions(-)
Title: A Unified Tidy Interface to R's Machine Learning Ecosystem
Description: Provides a unified tidyverse-compatible interface to R's machine
learning packages. Wraps established implementations from 'glmnet',
'randomForest', 'xgboost', 'e1071', 'rpart', 'gbm', 'nnet', 'cluster',
'dbscan', and others - providing consistent function signatures, tidy tibble
output, unified 'ggplot2'-based visualization, and optional formatted 'gt'
tables via the tl_table() family of functions. The underlying algorithms
are unchanged; 'tidylearn' simply makes them easier to use together. Access
raw model objects via the $fit slot for package-specific functionality.
Methods include random forests Breiman (2001) <doi:10.1023/A:1010933404324>,
LASSO regression Tibshirani (1996) <doi:10.1111/j.2517-6161.1996.tb02080.x>,
elastic net Zou and Hastie (2005) <doi:10.1111/j.1467-9868.2005.00503.x>,
support vector machines Cortes and Vapnik (1995) <doi:10.1007/BF00994018>,
and gradient boosting Friedman (2001) <doi:10.1214/aos/1013203451>.
Author: Cesaire Tobias [aut, cre]
Maintainer: Cesaire Tobias <cesaire@sheetsolved.com>
Diff between tidylearn versions 0.1.1 dated 2026-03-13 and 0.2.0 dated 2026-03-16
DESCRIPTION | 13 +++++++------ MD5 | 30 +++++++++++++++++++++++------- NAMESPACE | 9 +++++++++ NEWS.md | 34 ++++++++++++++++++++++++++++++++++ R/tables.R |only R/unsupervised-dbscan.R | 2 +- R/utils.R | 3 ++- build/vignette.rds |binary inst/doc/getting-started.html | 4 ++-- inst/doc/reporting.R |only inst/doc/reporting.Rmd |only inst/doc/reporting.html |only man/tidylearn-tables.Rd |only man/tl_table.Rd |only man/tl_table_clusters.Rd |only man/tl_table_coefficients.Rd |only man/tl_table_comparison.Rd |only man/tl_table_confusion.Rd |only man/tl_table_importance.Rd |only man/tl_table_loadings.Rd |only man/tl_table_metrics.Rd |only man/tl_table_variance.Rd |only tests/testthat/test-tables.R |only vignettes/reporting.Rmd |only 24 files changed, 78 insertions(+), 17 deletions(-)
Title: Extended Two-Way Fixed Effects
Description: Convenience functions for implementing extended two-way
fixed effect regressions a la Wooldridge (2023, 2025)
<doi:10.1093/ectj/utad016>, <doi:10.1007/s00181-025-02807-z>.
Author: Grant McDermott [aut, cre] ,
Frederic Kluser [ctb],
Ulrich Morawetz [ctb]
Maintainer: Grant McDermott <contact@grantmcdermott.com>
Diff between etwfe versions 0.6.0 dated 2025-09-03 and 0.6.1 dated 2026-03-16
DESCRIPTION | 43 MD5 | 29 NAMESPACE | 1 NEWS.md | 31 R/emfx.R | 12 R/etwfe.R | 28 README.md | 88 build/vignette.rds |binary inst/doc/etwfe.R | 2 inst/doc/etwfe.Rmd | 7 inst/doc/etwfe.html | 3736 ++++++++++++++++++++++++------ inst/tinytest/test_emfx.R | 18 inst/tinytest/test_reference_invariance.R |only inst/tinytest/test_xvar.R | 340 +- man/etwfe.Rd | 10 vignettes/etwfe.Rmd | 7 16 files changed, 3391 insertions(+), 961 deletions(-)
Title: Diagnostic Tools for Logistic and Conditional Logistic
Regression
Description: Provides tools for fitting, assessing, and comparing logistic
and conditional logistic regression models. Includes residual diagnostics
and goodness of fit measures for model development and evaluation in
matched case control studies.
Author: Brenda Contla Hernandez [aut, cre],
Matthieu Vignes [ctb] ,
Chris Compton [ctb]
Maintainer: Brenda Contla Hernandez <B.Hernandez@massey.ac.nz>
Diff between CLRtools versions 0.1.0 dated 2026-01-29 and 0.1.1 dated 2026-03-16
DESCRIPTION | 12 MD5 | 19 NEWS.md |only R/helpers_functions.R | 176 ++-- inst/doc/Bayesian_Logistic_regression.R | 194 +++- inst/doc/Bayesian_Logistic_regression.Rmd | 61 + inst/doc/Bayesian_Logistic_regression.html | 1128 +++++++++++++---------------- inst/doc/Logistic_Regression.html | 2 inst/extdata |only man/CLRtools-package.Rd | 10 vignettes/Bayesian_Logistic_regression.Rmd | 61 + 11 files changed, 860 insertions(+), 803 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-08-20 1.3
2023-09-29 1.2
2020-10-05 1.1
Title: Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide
Restriction Fragment Analysis
Description: Facilitates the analysis of SNP (single nucleotide polymorphism)
and silicodart (presence/absence) data. 'dartR.popgen' provides a suit of
functions to analyse such data in a population genetics context. It provides
several functions to calculate population genetic metrics and to study
population structure. Quite a few functions need additional software to be
able to run (gl.run.structure(), gl.blast(), gl.LDNe()). You find detailed description
in the help pages how to download and link the packages so the function can
run the software. 'dartR.popgen' is part of the the 'dartRverse' suit of packages.
Gruber et al. (2018) <doi:10.1111/1755-0998.12745>.
Mijangos et al. (2022) <doi:10.1111/2041-210X.13918>.
Author: Bernd Gruber [aut, cre],
Arthur Georges [aut],
Jose L. Mijangos [aut],
Carlo Pacioni [aut],
Diana Robledo-Ruiz [aut],
Peter J. Unmack [ctb],
Oliver Berry [ctb],
Lindsay V. Clark [ctb],
Floriaan Devloo-Delva [ctb],
Eric Archer [ctb],
Ching Ching Lau [ [...truncated...]
Maintainer: Bernd Gruber <bernd.gruber@canberra.edu.au>
Diff between dartR.popgen versions 1.0.0 dated 2024-06-27 and 1.2.2 dated 2026-03-16
DESCRIPTION | 30 ++- MD5 | 88 +++++++---- NAMESPACE | 41 +++++ R/gl.LDNe.r | 5 R/gl.TajimasD.r |only R/gl.blast.r | 16 +- R/gl.check.panel.r |only R/gl.find.genes.for.loci.r |only R/gl.find.loci.in.genes.r |only R/gl.ld.distance.r | 6 R/gl.ld.haplotype.r | 134 +++++++++++++---- R/gl.map.popcluster.r |only R/gl.map.snmf.r |only R/gl.nhybrids.r | 84 +++++----- R/gl.outflank.r | 3 R/gl.plot.faststructure.r | 33 +++- R/gl.plot.popcluster.r |only R/gl.plot.snmf.r |only R/gl.plot.structure.r | 13 + R/gl.read.structure.r |only R/gl.run.epos.R | 88 +++++++++++ R/gl.run.faststructure.r | 29 +++ R/gl.run.popcluster.r |only R/gl.run.snmf.r |only R/gl.run.structure.r | 13 + R/gl.select.panel.R |only R/utils.get.allele.freq.r |only R/utils.outflank.r | 8 - R/zzz.r | 4 build/partial.rdb |binary man/gl.LDNe.Rd | 2 man/gl.TajimasD.Rd |only man/gl.blast.Rd | 322 +++++++++++++++++++++--------------------- man/gl.check.panel.Rd |only man/gl.evanno.Rd | 112 +++++++------- man/gl.find.genes.for.loci.Rd |only man/gl.find.loci.in.genes.Rd |only man/gl.ld.distance.Rd | 2 man/gl.ld.haplotype.Rd | 42 ++++- man/gl.map.popcluster.Rd |only man/gl.map.snmf.Rd |only man/gl.map.structure.Rd | 226 ++++++++++++++--------------- man/gl.nhybrids.Rd | 4 man/gl.plot.faststructure.Rd | 7 man/gl.plot.popcluster.Rd |only man/gl.plot.snmf.Rd |only man/gl.read.structure.Rd |only man/gl.run.epos.Rd | 279 ++++++++++++++++++------------------ man/gl.run.faststructure.Rd | 7 man/gl.run.popcluster.Rd |only man/gl.run.snmf.Rd |only man/gl.run.stairway2.Rd | 310 ++++++++++++++++++++-------------------- man/gl.run.structure.Rd | 8 - man/gl.select.panel.Rd |only man/gl.sfs.Rd | 148 +++++++++---------- man/utils.get.allele.freq.Rd |only man/utils.structure.evanno.Rd | 50 +++--- man/zzz.Rd | 32 ++-- 58 files changed, 1243 insertions(+), 903 deletions(-)
Title: Applying Landscape Genomic Methods on 'SNP' and 'Silicodart'
Data
Description: Provides landscape genomic functions to analyse 'SNP' (single nuclear
polymorphism) data, such as least cost path analysis and isolation by distance.
Therefore each sample needs to have coordinate data attached (lat/lon) to be
able to run most of the functions. 'dartR.spatial' is a package that belongs
to the 'dartRverse' suit of packages and depends on 'dartR.base' and 'dartR.data'.
Author: Bernd Gruber [aut, cre],
Arthur Georges [aut],
Jose L. Mijangos [aut],
Carlo Pacioni [aut],
Peter J. Unmack [ctb],
Oliver Berry [ctb]
Maintainer: Bernd Gruber <bernd.gruber@canberra.edu.au>
Diff between dartR.spatial versions 1.0.3 dated 2025-08-21 and 1.2.2 dated 2026-03-16
DESCRIPTION | 18 +++++++++--------- MD5 | 14 +++++++------- NAMESPACE | 2 +- R/gl.ibd.r | 30 ++++++++++++++++++++++++++---- R/gl.run.eems.r | 17 +++++++++-------- R/zzz.r | 10 +++++++++- man/gl.ibd.Rd | 1 + man/gl.run.eems.Rd | 6 +++--- 8 files changed, 65 insertions(+), 33 deletions(-)