Title: Likelihood Models for Systems with Masked Component Cause of
Failure
Description: Maximum likelihood estimation for series systems where the
component cause of failure is masked. Implements analytical log-likelihood,
score, and Hessian functions for exponential, homogeneous Weibull, and
heterogeneous Weibull component lifetimes under masked cause conditions
(C1, C2, C3). Supports exact, right-censored, left-censored, and
interval-censored observations via composable observation functors.
Provides random data generation, model fitting, and Fisher information
for asymptotic inference. See Lin, Loh, and Bai (1993)
<doi:10.1109/24.257799> and Craiu and Reiser (2006)
<doi:10.1111/j.1541-0420.2005.00498.x>.
Author: Alexander Towell [aut, cre]
Maintainer: Alexander Towell <lex@metafunctor.com>
Diff between maskedcauses versions 0.9.2 dated 2026-03-08 and 0.9.3 dated 2026-03-17
DESCRIPTION | 6 - MD5 | 20 ++-- NAMESPACE | 2 R/reexports.R | 4 inst/doc/censoring_comparison.html | 6 - inst/doc/exponential_series.html | 62 +++++++-------- inst/doc/weibull_series.html | 6 - man/reexports.Rd | 3 tests/testthat/test-exp_series_md_c1_c2_c3.R | 62 +-------------- tests/testthat/test-wei_series_homogeneous_md_c1_c2_c3.R | 25 ------ tests/testthat/test-wei_series_md_c1_c2_c3.R | 25 ------ 11 files changed, 57 insertions(+), 164 deletions(-)
Title: Continuous Time Autoregressive Models
Description: Provides tools for fitting continuous-time autoregressive (CAR) and
complex CAR (CZAR) models for irregularly sampled time series using an exact
Gaussian state-space formulation and Kalman filtering/smoothing. Implements
maximum-likelihood estimation with stable parameterizations of characteristic
roots, model selection via AIC, residual and spectral diagnostics, forecasting
and simulation, and extraction of fitted state estimates. Methods are
described in Wang (2013) <doi:10.18637/jss.v053.i05>.
Author: Granville Tunnicliffe-Wilson [aut] ,
Zhu Wang [cre, aut] ,
Cleve Moler [ctb, cph] ,
Jack Dongarra [ctb, cph] ,
Jim Bunch [ctb, cph] ,
G. W. Stewart [ctb, cph] ,
John Nash [ctb]
Maintainer: Zhu Wang <zwang145@uthsc.edu>
This is a re-admission after prior archival of version 1.0-22 dated 2019-01-14
Diff between cts versions 1.0-22 dated 2019-01-14 and 1.0-24 dated 2026-03-17
cts-1.0-22/cts/inst/doc/cts_Fortran_source_diagram.pdf |only cts-1.0-22/cts/inst/doc/cts_Fortran_source_diagram.pptx |only cts-1.0-22/cts/inst/doc/kf.R |only cts-1.0-22/cts/inst/doc/kf.Rnw |only cts-1.0-22/cts/inst/doc/kf.pdf |only cts-1.0-22/cts/vignettes/kf.Rnw |only cts-1.0-22/cts/vignettes/kf.bib |only cts-1.0-24/cts/DESCRIPTION | 45 ++++- cts-1.0-24/cts/MD5 | 125 ++++++++-------- cts-1.0-24/cts/NAMESPACE | 4 cts-1.0-24/cts/R/aic.R | 29 ++- cts-1.0-24/cts/R/car.R | 36 ++-- cts-1.0-24/cts/R/factab.R | 2 cts-1.0-24/cts/R/plot.car.R | 2 cts-1.0-24/cts/README.md |only cts-1.0-24/cts/build/vignette.rds |binary cts-1.0-24/cts/inst/CITATION | 8 - cts-1.0-24/cts/inst/doc/kf.html |only cts-1.0-24/cts/inst/doc/kf.html.asis |only cts-1.0-24/cts/man/V22174.Rd | 2 cts-1.0-24/cts/man/car.Rd | 9 - cts-1.0-24/cts/man/cts-internal.Rd | 11 + cts-1.0-24/cts/man/factab.Rd | 4 cts-1.0-24/cts/man/figures |only cts-1.0-24/cts/man/kalsmo.comp.Rd | 4 cts-1.0-24/cts/man/plotSpecCar.Rd | 2 cts-1.0-24/cts/man/plotSpecLs.Rd | 6 cts-1.0-24/cts/src/Makevars | 2 cts-1.0-24/cts/src/a9rntc.f | 11 - cts-1.0-24/cts/src/a9rntd.f | 16 +- cts-1.0-24/cts/src/a9rnti.f | 62 ++++--- cts-1.0-24/cts/src/a9rntl.f | 18 +- cts-1.0-24/cts/src/a9rntr.f | 16 +- cts-1.0-24/cts/src/balanc.f | 6 cts-1.0-24/cts/src/cinvert.f | 8 - cts-1.0-24/cts/src/complete.f | 50 +++--- cts-1.0-24/cts/src/d1mach.f | 18 +- cts-1.0-24/cts/src/display.f | 4 cts-1.0-24/cts/src/e9rint.f | 11 - cts-1.0-24/cts/src/eprint.f | 2 cts-1.0-24/cts/src/forecast.f | 7 cts-1.0-24/cts/src/getmin.f | 8 - cts-1.0-24/cts/src/i1mach.f | 40 ++--- cts-1.0-24/cts/src/kfilsm.f | 9 - cts-1.0-24/cts/src/kfilsm1.f | 9 - cts-1.0-24/cts/src/loop.f | 13 - cts-1.0-24/cts/src/lybsc.f | 48 +++--- cts-1.0-24/cts/src/mutil.f | 78 ++++++--- cts-1.0-24/cts/src/rejuce.f | 9 - cts-1.0-24/cts/src/repar.f | 27 +-- cts-1.0-24/cts/src/resg0.f | 56 +++---- cts-1.0-24/cts/src/resg0new.f | 69 ++++---- cts-1.0-24/cts/src/resg1d.f | 83 +++++----- cts-1.0-24/cts/src/resg1dpre.f | 82 +++++----- cts-1.0-24/cts/src/resg1dpre1.f | 56 +++---- cts-1.0-24/cts/src/resgen.f | 4 cts-1.0-24/cts/src/revg1.f | 39 ++-- cts-1.0-24/cts/src/s88fmt.f | 4 cts-1.0-24/cts/src/search.f | 7 cts-1.0-24/cts/src/setcom.f | 11 - cts-1.0-24/cts/src/seterr.f | 2 cts-1.0-24/cts/src/setfor.f | 2 cts-1.0-24/cts/src/setkfilsm.f | 2 cts-1.0-24/cts/src/setup1.f | 22 +- cts-1.0-24/cts/src/simi.f | 28 +-- cts-1.0-24/cts/src/stkdmp.f | 20 +- cts-1.0-24/cts/src/update.f | 4 cts-1.0-24/cts/vignettes/kf.html.asis |only 68 files changed, 694 insertions(+), 558 deletions(-)
More information about AMDconfigurations at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-07 0.5.6
2018-07-05 0.5.5
2016-11-23 0.5.4
2016-07-07 0.5.3
2016-05-16 0.5.2
2016-02-24 0.5.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-03-16 2.0.0
2021-06-16 1.0.0
2021-03-18 0.2.0
2021-02-19 0.1.0
Title: Flexible Genotyping for Polyploids
Description: Implements empirical Bayes approaches to genotype
polyploids from next generation sequencing data while
accounting for allele bias, overdispersion, and sequencing
error. The main functions are flexdog() and multidog(),
which allow the specification
of many different genotype distributions. Also provided are functions to
simulate genotypes, rgeno(), and read-counts, rflexdog(), as well as
functions to calculate oracle genotyping error rates, oracle_mis(), and
correlation with the true genotypes, oracle_cor(). These latter two
functions are useful for read depth calculations. Run
browseVignettes(package = "updog") in R for example usage. See
Gerard et al. (2018) <doi:10.1534/genetics.118.301468> and
Gerard and Ferrao (2020) <doi:10.1093/bioinformatics/btz852> for details
on the implemented methods.
Author: David Gerard [aut, cre]
Maintainer: David Gerard <gerard.1787@gmail.com>
Diff between updog versions 2.1.6 dated 2025-09-24 and 2.1.7 dated 2026-03-17
DESCRIPTION | 9 +++++---- MD5 | 28 ++++++++++++++-------------- NAMESPACE | 1 + NEWS.md | 5 +++++ R/multidog.R | 4 ++-- R/updog.R | 1 + README.md | 7 +++---- build/partial.rdb |binary build/vignette.rds |binary inst/doc/multidog.R | 2 +- inst/doc/multidog.Rmd | 2 +- inst/doc/multidog.html | 2 +- man/multidog.Rd | 4 ++-- src/RcppExports.cpp | 42 +++++++++++++++++++++--------------------- vignettes/multidog.Rmd | 2 +- 15 files changed, 58 insertions(+), 51 deletions(-)
Title: Template Model Builder: A General Random Effect Tool Inspired by
'ADMB'
Description: With this tool, a user should be able to quickly implement
complex random effect models through simple C++ templates. The package combines
'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector
library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain
an efficient implementation of the applied Laplace approximation with exact
derivatives. Key features are: Automatic sparseness detection, parallelism
through 'BLAS' and parallel user templates.
Author: Kasper Kristensen [aut, cre, cph],
Brad Bell [cph],
Hans Skaug [ctb],
Arni Magnusson [ctb],
Casper Berg [ctb],
Anders Nielsen [ctb],
Martin Maechler [ctb],
Theo Michelot [ctb],
Mollie Brooks [ctb],
Alex Forrence [ctb],
Christoffer Moesgaard Albertsen [...truncated...]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between TMB versions 1.9.19 dated 2025-12-15 and 1.9.20 dated 2026-03-17
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS | 6 ++++++ inst/include/TMB.hpp | 7 +++++++ inst/include/TMBad/TMBad.cpp | 4 ++-- inst/include/TMBad/global.hpp | 2 +- inst/include/config.hpp | 2 +- inst/include/dynamic_data.hpp | 2 +- inst/include/tmb_core.hpp | 2 +- inst/include/toggle_thread_safe_R.hpp | 8 ++++---- 10 files changed, 36 insertions(+), 23 deletions(-)
Title: S3 Classes and Methods for Tidy Functional Data
Description: Provides S3 vector types for functional data represented on
grids, in spline bases, or via functional principal components.
Supports arithmetic and summary methods, plotting, derivation,
integration, smoothing, registration, and data import/export for these
functional vectors. Includes data-wrangling tools for re-evaluation,
subsetting, sub-assignment, zooming into sub-domains, and extracting
functional features such as minima, maxima, and their locations.
Enables joint analysis of functional and scalar variables by integrating
functional vectors into standard data frames.
Author: Fabian Scheipl [aut, cre, cph] ,
Jeff Goldsmith [aut],
Maximilian Muecke [aut] ,
Julia Wrobel [ctb] ,
Sebastian Fischer [ctb] ,
Trevor Hastie [ctb] ,
Rahul Mazumder [ctb] ,
Chen Meng [ctb]
Maintainer: Fabian Scheipl <fabian.scheipl@googlemail.com>
Diff between tf versions 0.3.4 dated 2024-05-22 and 0.4.0 dated 2026-03-17
DESCRIPTION | 79 ++-- MD5 | 209 +++++++----- NAMESPACE | 185 ++++++---- NEWS.md | 55 ++- R/approx.R | 44 +- R/assertions.R |only R/bibentries.R | 158 ++++++++- R/brackets.R | 162 ++++++--- R/calculus.R | 402 +++++++++++++++++------ R/convert-construct-utils.R | 61 ++- R/convert.R | 37 +- R/data.R |only R/depth.R | 504 +++++++++++++++++++++++++++-- R/evaluate.R | 91 +++-- R/fda-connectors.R |only R/fwise.R | 107 +++--- R/globals.R | 20 + R/graphics.R | 157 ++++++--- R/interpolate.R | 10 R/landmarks.R |only R/math.R | 40 ++ R/methods.R | 112 +++--- R/ops.R | 573 +++++++++++++++++++++++++--------- R/print-format.R | 300 ++++++++++++++--- R/rebase.R | 142 +++++--- R/register-cc.R |only R/register-utils.R |only R/register.R |only R/registration-class.R |only R/rng.R | 180 +++++++--- R/smooth.R | 95 +++-- R/soft-impute-svd.R | 48 +- R/split-combine.R |only R/summarize.R | 209 +++++++++--- R/tf-package.R | 15 R/tf-s4.R | 117 +++--- R/tfb-class.R | 37 +- R/tfb-fpc-utils.R | 48 +- R/tfb-fpc.R | 116 ++++-- R/tfb-spline-utils.R | 215 ++++++++---- R/tfb-spline.R | 510 +++++++++++++++++++++--------- R/tfd-class.R | 427 +++++++++++++++++-------- R/utils.R | 169 +++++----- R/vctrs-cast.R | 132 ++----- R/vctrs-ptype2.R | 131 ++----- R/where.R | 43 +- R/zoom.R | 76 ++-- R/zzz.R |only README.md | 21 + build |only data |only man/converters.Rd | 18 - man/ensure_list.Rd | 6 man/fivenum.Rd |only man/fourier.smooth.Rd |only man/fpc_wsvd.Rd | 24 - man/functionwise.Rd | 31 - man/gait.Rd |only man/growth.Rd |only man/in_range.Rd | 8 man/landmarks.Rd |only man/pinch.Rd |only man/prep_plotting_arg.Rd | 10 man/tf-package.Rd | 8 man/tf_align.Rd |only man/tf_approx.Rd | 40 +- man/tf_depth.Rd | 79 ++++ man/tf_derive.Rd | 69 ++-- man/tf_estimate_warps.Rd |only man/tf_evaluate.Rd | 2 man/tf_integrate.Rd | 17 - man/tf_interpolate.Rd | 8 man/tf_invert.Rd |only man/tf_jiggle.Rd | 30 + man/tf_minmax.Rd |only man/tf_order.Rd |only man/tf_rebase.Rd | 14 man/tf_register.Rd |only man/tf_registration.Rd |only man/tf_rgp.Rd | 36 +- man/tf_smooth.Rd | 14 man/tf_splitcombine.Rd |only man/tf_warp.Rd |only man/tf_where.Rd | 15 man/tf_zoom.Rd | 4 man/tfb.Rd | 14 man/tfb_fpc.Rd | 12 man/tfb_spline.Rd | 44 ++ man/tfbrackets.Rd | 35 +- man/tfd.Rd | 36 +- man/tfdisplay.Rd | 53 ++- man/tfgroupgenerics.Rd | 46 +- man/tfmethods.Rd | 21 + man/tfsummaries.Rd | 30 + man/tfviz.Rd | 25 - man/unique_id.Rd | 5 man/vctrs.Rd | 94 ++--- tests/testthat/test-assertions.R |only tests/testthat/test-brackets.R |only tests/testthat/test-calculus.R | 126 ++++++- tests/testthat/test-concatenation.R | 98 +++-- tests/testthat/test-convert.R |only tests/testthat/test-depth.R | 123 ++++++- tests/testthat/test-evaluate.R | 61 ++- tests/testthat/test-evaluator.R | 8 tests/testthat/test-fda-bases.R |only tests/testthat/test-fwise.R | 84 +++- tests/testthat/test-interpolate-tfb.R | 34 +- tests/testthat/test-na-handling.R |only tests/testthat/test-names.R | 19 - tests/testthat/test-ops.R |only tests/testthat/test-print-format.R |only tests/testthat/test-rank-order.R |only tests/testthat/test-rebase.R | 101 +++-- tests/testthat/test-register.R |only tests/testthat/test-rgp.R | 10 tests/testthat/test-split-combine.R |only tests/testthat/test-summarize.R |only tests/testthat/test-tfb-fpc.R | 33 + tests/testthat/test-tfb-spline.R | 253 +++++++++++---- tests/testthat/test-tfd-class.R |only tests/testthat/test-vec-cast.R | 71 ++-- tests/testthat/test-where.R | 5 tests/testthat/test-zoom.R | 29 + 124 files changed, 5534 insertions(+), 2406 deletions(-)
Title: Efficient Rolling Functions
Description: Fast rolling-window functions for numeric vectors.
Designed for efficient processing of environmental time-series data.
Author: Jonathan Callahan [aut, cre],
Hans Martin [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaRollUtils versions 0.1.4 dated 2025-05-09 and 1.0.0 dated 2026-03-17
MazamaRollUtils-0.1.4/MazamaRollUtils/tests/testthat/test-MAD.R |only MazamaRollUtils-0.1.4/MazamaRollUtils/tests/testthat/test-input.R |only MazamaRollUtils-0.1.4/MazamaRollUtils/tests/testthat/test-na_rm.R |only MazamaRollUtils-0.1.4/MazamaRollUtils/tests/testthat/test-weights.R |only MazamaRollUtils-0.1.4/MazamaRollUtils/tests/testthat/test-zoo.R |only MazamaRollUtils-1.0.0/MazamaRollUtils/DESCRIPTION | 32 MazamaRollUtils-1.0.0/MazamaRollUtils/MD5 | 71 MazamaRollUtils-1.0.0/MazamaRollUtils/NAMESPACE | 19 MazamaRollUtils-1.0.0/MazamaRollUtils/NEWS.md | 8 MazamaRollUtils-1.0.0/MazamaRollUtils/R/MazamaRollUtils.R | 781 +++++----- MazamaRollUtils-1.0.0/MazamaRollUtils/R/RcppExports.R | 4 MazamaRollUtils-1.0.0/MazamaRollUtils/R/data.R | 20 MazamaRollUtils-1.0.0/MazamaRollUtils/R/findOutliers.R | 128 - MazamaRollUtils-1.0.0/MazamaRollUtils/README.md | 6 MazamaRollUtils-1.0.0/MazamaRollUtils/data/example_pm25.rda |binary MazamaRollUtils-1.0.0/MazamaRollUtils/inst/doc/MazamaRollUtils.Rmd | 23 MazamaRollUtils-1.0.0/MazamaRollUtils/inst/doc/MazamaRollUtils.html | 41 MazamaRollUtils-1.0.0/MazamaRollUtils/man/example_pm25.Rd | 13 MazamaRollUtils-1.0.0/MazamaRollUtils/man/findOutliers.Rd | 15 MazamaRollUtils-1.0.0/MazamaRollUtils/man/roll_MAD.Rd | 16 MazamaRollUtils-1.0.0/MazamaRollUtils/man/roll_hampel.Rd | 14 MazamaRollUtils-1.0.0/MazamaRollUtils/man/roll_max.Rd | 21 MazamaRollUtils-1.0.0/MazamaRollUtils/man/roll_mean.Rd | 19 MazamaRollUtils-1.0.0/MazamaRollUtils/man/roll_median.Rd | 12 MazamaRollUtils-1.0.0/MazamaRollUtils/man/roll_min.Rd | 18 MazamaRollUtils-1.0.0/MazamaRollUtils/man/roll_nowcast.Rd |only MazamaRollUtils-1.0.0/MazamaRollUtils/man/roll_prod.Rd | 10 MazamaRollUtils-1.0.0/MazamaRollUtils/man/roll_sd.Rd | 19 MazamaRollUtils-1.0.0/MazamaRollUtils/man/roll_sum.Rd | 10 MazamaRollUtils-1.0.0/MazamaRollUtils/man/roll_var.Rd | 15 MazamaRollUtils-1.0.0/MazamaRollUtils/src/MazamaRollUtils.cpp | 543 ++---- MazamaRollUtils-1.0.0/MazamaRollUtils/src/RcppExports.cpp | 52 MazamaRollUtils-1.0.0/MazamaRollUtils/src/roll_nowcast.cpp |only MazamaRollUtils-1.0.0/MazamaRollUtils/tests/testthat/test-common-input.R |only MazamaRollUtils-1.0.0/MazamaRollUtils/tests/testthat/test-common-na-rm.R |only MazamaRollUtils-1.0.0/MazamaRollUtils/tests/testthat/test-compat-zoo.R |only MazamaRollUtils-1.0.0/MazamaRollUtils/tests/testthat/test-roll_MAD.R |only MazamaRollUtils-1.0.0/MazamaRollUtils/tests/testthat/test-roll_hampel.R |only MazamaRollUtils-1.0.0/MazamaRollUtils/tests/testthat/test-roll_mean-weights.R.R |only MazamaRollUtils-1.0.0/MazamaRollUtils/tests/testthat/test-roll_mean.R |only MazamaRollUtils-1.0.0/MazamaRollUtils/tests/testthat/test-roll_median.R |only MazamaRollUtils-1.0.0/MazamaRollUtils/tests/testthat/test-roll_nowcast.R |only MazamaRollUtils-1.0.0/MazamaRollUtils/tests/testthat/test-roll_sd.R |only MazamaRollUtils-1.0.0/MazamaRollUtils/tests/testthat/test-roll_sum.R |only MazamaRollUtils-1.0.0/MazamaRollUtils/tests/testthat/test-roll_var.R |only MazamaRollUtils-1.0.0/MazamaRollUtils/vignettes/MazamaRollUtils.Rmd | 23 46 files changed, 994 insertions(+), 939 deletions(-)
More information about MazamaRollUtils at CRAN
Permanent link
Title: Provides 'box' Compatibility for 'languageserver'
Description: A 'box' compatible custom language parser for the 'languageserver' package to provide
completion and signature hints in code editors.
Author: Ricardo Rodrigo Basa [aut, cre],
Pavel Demin [aut],
Jakub Nowicki [aut],
Appsilon Sp. z o.o. [cph]
Maintainer: Ricardo Rodrigo Basa <opensource+rodrigo@appsilon.com>
Diff between box.lsp versions 0.1.3 dated 2024-09-19 and 0.1.4 dated 2026-03-17
DESCRIPTION | 6 MD5 | 18 NEWS.md | 8 README.md | 5 tests/testthat/helper-utils.R | 325 --------------- tests/testthat/test-lsp_aaa_regression.R | 2 tests/testthat/test-lsp_completion_package_attach_list.R | 8 tests/testthat/test-lsp_completion_package_three_dots.R | 6 tests/testthat/test-lsp_completion_whole_package.R | 2 tests/testthat/test-signature.R | 2 10 files changed, 47 insertions(+), 335 deletions(-)
Title: Quantitative Evaluation of the Native Fertility of Tropical
Soils
Description: An implementation of the QUEFTS (Quantitative Evaluation of the Native Fertility of Tropical Soils) model. The model (1) estimates native nutrient (N, P, K) supply of soils from a few soil chemical properties; and (2) computes crop yield given that supply, crop parameters, fertilizer application, and crop attainable yield. See Janssen et al. (1990) <doi:10.1016/0016-7061(90)90021-Z> for the technical details and Sattari et al. (2014) <doi:10.1016/j.fcr.2013.12.005> for a recent evaluation and improvements. There are also functions to compute optimal fertilizer application rates.
Author: Robert J. Hijmans [cre, aut],
Pieter Pypers [ctb, aut],
Joost Wolff [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between Rquefts versions 1.2-5 dated 2025-07-17 and 1.2-8 dated 2026-03-17
DESCRIPTION | 10 - MD5 | 55 +++--- NAMESPACE | 15 - R/RcppExports.R | 14 - R/a_generic_functions.R | 126 +++++++------- R/fcc.R | 244 +++++++++++++-------------- R/ferti_funs.R | 153 +++++++++++------ R/nutSupply.R | 264 +++++++++++++++--------------- R/reverse.R | 58 +++--- R/rquefts.R | 270 +++++++++++++++--------------- R/spatial.R | 134 +++++++-------- R/zzz.R | 2 build/partial.rdb |binary inst/extdata/fertilizers.csv | 60 +++--- inst/extdata/old_quefts_crop_pars.csv | 58 +++--- inst/extdata/quefts_crop_pars.csv | 58 +++--- man/Rquefts-package.Rd | 46 ++--- man/batch.Rd | 92 +++++----- man/fertApp.Rd | 88 +++++----- man/fertilizer.Rd | 76 ++++---- man/nutSupply.Rd | 98 +++++------ man/optApp.Rd |only man/predict.Rd | 124 +++++++------- man/quefts.Rd | 298 +++++++++++++++++----------------- man/quefts_biom.Rd | 76 ++++---- man/quefts_crop.Rd | 80 ++++----- man/quefts_fert.Rd | 68 +++---- man/quefts_soil.Rd | 74 ++++---- man/revSupply.Rd | 104 +++++------ 29 files changed, 1398 insertions(+), 1347 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library aiming towards
a good balance between speed and ease of use. It provides high-level syntax and
functionality deliberately similar to Matlab. It is useful for algorithm development
directly in C++, or quick conversion of research code into production environments.
It provides efficient classes for vectors, matrices and cubes where dense and sparse
matrices are supported. Integer, floating point and complex numbers are supported.
A sophisticated expression evaluator (based on template meta-programming) automatically
combines several operations to increase speed and efficiency. Dynamic evaluation
automatically chooses optimal code paths based on detected matrix structures.
Matrix decompositions are provided through integration with LAPACK, or one of its
high performance drop-in replacements (such as 'MKL' or 'OpenBLAS'). It can
automatically use 'OpenMP' multi-threading (parallelisation) to speed up
computationally expensive operations [...truncated...]
Author: Dirk Eddelbuettel [aut, cre] ,
Romain Francois [aut] ,
Doug Bates [aut] ,
Binxiang Ni [aut],
Conrad Sanderson [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 15.2.3-1 dated 2025-12-17 and 15.2.4-1 dated 2026-03-17
ChangeLog | 28 DESCRIPTION | 8 MD5 | 66 +- NAMESPACE | 4 R/init.R | 24 build/partial.rdb |binary build/vignette.rds |binary configure | 18 configure.ac | 2 inst/NEWS.Rd | 13 inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-sparseMatrix.pdf |binary inst/include/current/armadillo_bits/Col_meat.hpp | 4 inst/include/current/armadillo_bits/Cube_bones.hpp | 3 inst/include/current/armadillo_bits/Cube_meat.hpp | 73 +- inst/include/current/armadillo_bits/Mat_meat.hpp | 108 ++- inst/include/current/armadillo_bits/Row_meat.hpp | 4 inst/include/current/armadillo_bits/SpMat_meat.hpp | 118 ++- inst/include/current/armadillo_bits/SpSubview_meat.hpp | 41 + inst/include/current/armadillo_bits/arma_version.hpp | 2 inst/include/current/armadillo_bits/config.hpp | 24 inst/include/current/armadillo_bits/config.hpp.cmake | 24 inst/include/current/armadillo_bits/constants.hpp | 61 +- inst/include/current/armadillo_bits/fill.hpp | 31 - inst/include/current/armadillo_bits/op_accu_meat.hpp | 8 inst/include/current/armadillo_bits/op_htrans_meat.hpp | 1 inst/include/current/armadillo_bits/op_strans_meat.hpp | 1 inst/include/current/armadillo_bits/op_vectorise_meat.hpp | 8 inst/include/current/armadillo_bits/subview_bones.hpp | 3 inst/include/current/armadillo_bits/subview_cube_each_meat.hpp | 154 +++-- inst/include/current/armadillo_bits/subview_cube_meat.hpp | 81 ++ inst/include/current/armadillo_bits/subview_each_meat.hpp | 278 +++++---- inst/include/current/armadillo_bits/subview_meat.hpp | 298 ++++++---- man/RcppArmadillo-package.Rd | 55 - 34 files changed, 1026 insertions(+), 517 deletions(-)
Title: Knowledge Discovery by Accuracy Maximization
Description: A self-guided, weakly supervised learning algorithm for feature extraction from noisy and
high-dimensional data. It facilitates the identification of patterns that reflect underlying group
structures across all samples in a dataset. The method incorporates a novel strategy to integrate
spatial information, improving the clarity of results in spatially resolved data.
Author: Stefano Cacciatore [aut, trl, cre] ,
Leonardo Tenori [aut]
Maintainer: Stefano Cacciatore <tkcaccia@gmail.com>
Diff between KODAMA versions 3.2 dated 2026-03-17 and 3.3 dated 2026-03-17
DESCRIPTION | 12 ++++--- MD5 | 14 ++++----- R/KOD.R | 37 ++++++++++++------------ inst/doc/KODAMA.pdf |binary man/KODAMA.matrix.Rd | 11 +++++-- man/core_cpp.Rd | 9 ++--- src/prova.cpp | 55 ++++++++++++++++++++++++++---------- tests/testthat/test-kodama-matrix.R | 41 ++++++++++++++++++++++++++ 8 files changed, 126 insertions(+), 53 deletions(-)
Title: Mixed FLP and ML Estimation of ETAS Space-Time Point Processes
for Earthquake Description
Description: Estimation of the components of an ETAS (Epidemic Type Aftershock Sequence) model for earthquake description. Non-parametric background seismicity can be estimated through FLP (Forward Likelihood Predictive). New version 2.0.0: covariates have been introduced to explain the effects of external factors on the induced seismicity; the parametrization has been changed; in version 2.3.0 improved update method. Chiodi, Adelfio (2017)<doi:10.18637/jss.v076.i03>.
Author: Marcello Chiodi [aut, cre],
Giada Adelfio [aut]
Maintainer: Marcello Chiodi <marcello.chiodi@unipa.it>
Diff between etasFLP versions 2.2.2 dated 2023-09-14 and 2.3.0 dated 2026-03-17
etasFLP-2.2.2/etasFLP/src/Makevars |only etasFLP-2.3.0/etasFLP/ChangeLog | 18 + etasFLP-2.3.0/etasFLP/DESCRIPTION | 12 - etasFLP-2.3.0/etasFLP/MD5 | 49 ++-- etasFLP-2.3.0/etasFLP/R/compare.etasclass.R | 26 +- etasFLP-2.3.0/etasFLP/R/daily.etasclass.R | 5 etasFLP-2.3.0/etasFLP/R/etasclass.R | 219 +++++++++++++------- etasFLP-2.3.0/etasFLP/R/flp1.etas.nlmNEW.R | 11 - etasFLP-2.3.0/etasFLP/R/flpkspace.R | 3 etasFLP-2.3.0/etasFLP/R/generaloptimizationNEW.R | 6 etasFLP-2.3.0/etasFLP/R/plot.etasclass.R | 18 - etasFLP-2.3.0/etasFLP/R/print.etasclass.R | 6 etasFLP-2.3.0/etasFLP/R/timeupdate.etasclass.R | 6 etasFLP-2.3.0/etasFLP/R/update.etasclass.R | 12 - etasFLP-2.3.0/etasFLP/man/compare.etasclass.Rd | 2 etasFLP-2.3.0/etasFLP/man/daily.etasclass.Rd | 4 etasFLP-2.3.0/etasFLP/man/etas.starting.Rd | 2 etasFLP-2.3.0/etasFLP/man/etasFLP-package.Rd | 8 etasFLP-2.3.0/etasFLP/man/etasclass.Rd | 169 +++++++++------ etasFLP-2.3.0/etasFLP/man/plot.etasclass.Rd | 2 etasFLP-2.3.0/etasFLP/man/plot.profile.etasclass.Rd | 2 etasFLP-2.3.0/etasFLP/man/profile.etasclass.Rd | 22 +- etasFLP-2.3.0/etasFLP/man/summary.etasclass.Rd | 94 +++----- etasFLP-2.3.0/etasFLP/man/time2date.Rd | 2 etasFLP-2.3.0/etasFLP/man/timeupdate.etasclass.Rd | 2 etasFLP-2.3.0/etasFLP/man/update.etasclass.Rd | 6 26 files changed, 408 insertions(+), 298 deletions(-)
Title: Survey Standard Error Estimation for Cumulated Estimates and
their Differences in Complex Panel Designs
Description: Calculate point estimates and their standard errors in complex household surveys using bootstrap replicates. Bootstrapping considers survey design with a rotating panel. A comprehensive description of the methodology can be found under <https://statistikat.github.io/surveysd/articles/methodology.html>.
Author: Johannes Gussenbauer [aut, cre],
Alexander Kowarik [aut] ,
Eileen Vattheuer [aut],
Gregor de Cillia [aut],
Matthias Till [ctb]
Maintainer: Johannes Gussenbauer <Johannes.Gussenbauer@statistik.gv.at>
Diff between surveysd versions 2.0.0 dated 2025-08-26 and 2.0.1 dated 2026-03-17
surveysd-2.0.0/surveysd/tests/testthat/Rplots.pdf |only surveysd-2.0.1/surveysd/DESCRIPTION | 8 surveysd-2.0.1/surveysd/MD5 | 27 surveysd-2.0.1/surveysd/R/calc.stError.R | 17 surveysd-2.0.1/surveysd/R/draw.bootstrap.R | 4 surveysd-2.0.1/surveysd/R/rescaled.bootstrap.R | 68 +- surveysd-2.0.1/surveysd/build/partial.rdb |binary surveysd-2.0.1/surveysd/build/vignette.rds |binary surveysd-2.0.1/surveysd/inst/doc/error_estimation.html | 559 ++++++++--------- surveysd-2.0.1/surveysd/inst/doc/ipf.html | 23 surveysd-2.0.1/surveysd/inst/doc/raowu.html | 9 surveysd-2.0.1/surveysd/man/calc.stError.Rd | 5 surveysd-2.0.1/surveysd/man/draw.bootstrap.Rd | 4 surveysd-2.0.1/surveysd/man/rescaled.bootstrap.Rd | 15 surveysd-2.0.1/surveysd/vignettes/surveysd.html | 65 + 15 files changed, 402 insertions(+), 402 deletions(-)
Title: Modified Iterative Cumulative Sum of Squares Algorithm
Description: Companion package of Carrion-i-Silvestre & Sansó (2026):
"Generalized Extreme Value Approximation to the CUMSUMQ Test for Constant
Unconditional Variance in Heavy-Tailed Time Series". It implements the Modified
Iterative Cumulative Sum of Squares Algorithm, which is an extension of
the Iterative Cumulative Sum of Squares (ICSS) Algorithm of Inclan and Tiao (1994), and it checks for changes in the
unconditional variance of a time series controlling for the tail index of
the underlying distribution. The fourth order moment is estimated non-parametrically
to avoid the size problems when the innovations are non-Gaussian (see, Sansó et al., 2004).
Critical values and p-values are generated using a Generalized Extreme Value distribution approach.
References
Carrion-i-Silvestre J.J & Sansó A (2026) <doi:10.1080/03610918.2026.2615207>.
Inclan C & Tiao G.C (1994) <doi:10.1080/01621459.1994.10476824>,
Sansó A & Aragó V & Carrion-i-Silvestre J.L (2004) <https:// [...truncated...]
Author: Josep Lluis Carrion-i-Silvestre [aut],
Andreu Sanso [aut, cre]
Maintainer: Andreu Sanso <andreu.sanso@uib.eu>
Diff between micss versions 0.2.0 dated 2024-08-22 and 0.3.0 dated 2026-03-17
DESCRIPTION | 10 +++--- MD5 | 30 +++++++++---------- NEWS.md | 8 ++--- R/micss.R | 19 ++++++------ inst/CITATION | 9 +++-- man/cv.kappa.Rd | 57 +++++++++++++++++++------------------ man/data.Rd | 2 - man/logReturnsRandDollar.Rd | 4 +- man/micss.Rd | 2 - man/p.val.kappa.Rd | 56 ++++++++++++++++++------------------ man/plot.icss.Rd | 67 ++++++++++++++++++++++---------------------- man/print.icss.Rd | 59 ++++++++++++++++++++------------------ man/print.micss.Rd | 53 ++++++++++++++++++---------------- man/sr_loc.Rd | 60 +++++++++++++++++++-------------------- man/sr_scale.Rd | 60 +++++++++++++++++++-------------------- man/sr_shape.Rd | 60 +++++++++++++++++++-------------------- 16 files changed, 285 insertions(+), 271 deletions(-)
Title: Download and Analyze Spatial Development Data from 'INKAR'
Description: A professional R interface to download and analyze spatial
development indicators from the 'BBSR' 'INKAR' (Indikatoren und Karten zur Raum-
und Stadtentwicklung) database. Features a bilingual interactive wizard,
fuzzy search, multi-indicator downloads with automatic tidy merging (long/wide),
robust disk caching, and premium 'ggplot2' themes for regional mapping.
Author: Omer Furkan Coban [aut, cre]
Maintainer: Omer Furkan Coban <oemer.furkan.coban@uni-oldenburg.de>
Diff between inkaR versions 0.4.4 dated 2026-03-16 and 0.6.1 dated 2026-03-17
DESCRIPTION | 20 +- MD5 | 22 +- NAMESPACE | 2 NEWS.md | 36 +++- R/download.R | 94 ++++++++++- R/metadata.R | 441 ++++++++++++++++++++++++++++++++++++++++------------ R/plot.R | 216 ++++++++++++++----------- R/utils.R | 27 +++ data/indicators.rda |binary man/inkaR.Rd | 8 man/plot_inkar.Rd | 6 man/select_years.Rd |only man/theme_inkaR.Rd |only 13 files changed, 648 insertions(+), 224 deletions(-)
Title: Faster Generation of Quantile Quantile Plots with Large Samples
Description: New and faster implementations for quantile quantile plots.
The package also includes a function to prune data for quantile quantile
plots. This can drastically reduce the running time for large samples,
for 100 million samples, you can expect a factor 80X speedup.
Author: Gudmundur Einarsson [aut, cre],
Hafsteinn Einarsson [aut]
Maintainer: Gudmundur Einarsson <gudmundur.einarsson.phd@gmail.com>
Diff between fastqq versions 0.1.4 dated 2026-03-13 and 0.1.5 dated 2026-03-17
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ tests/testthat/test-qqlog.R | 2 +- 4 files changed, 11 insertions(+), 7 deletions(-)
Title: Client for the Brazilian Foreign Trade Statistics API
('ComexStat')
Description: Interface to the 'ComexStat' API
<https://comexstat.mdic.gov.br/> from the Brazilian Ministry of
Development, Industry, Trade and Services (MDIC). Provides access to
detailed export and import data, including general trade statistics
(1997-present), city-level data, historical data (1989-1996), and
auxiliary tables with product codes (NCM - Nomenclatura Comum do
Mercosul, NBM - Nomenclatura Brasileira de Mercadorias, HS -
Harmonized System), countries, economic classifications (CGCE -
Classificacao por Grandes Categorias Economicas, SITC - Standard
International Trade Classification, ISIC - International Standard
Industrial Classification), and other categories. Uses only 'httr2'
for HTTP requests and 'cli' for console messages.
Author: Andre Leite [aut, cre],
Marcos Wasilew [aut],
Hugo Vasconcelos [aut],
Carlos Amorin [aut],
Diogo Bezerra [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between comexr versions 0.2.0 dated 2026-03-10 and 0.2.1 dated 2026-03-17
DESCRIPTION | 7 +- LICENSE | 2 MD5 | 26 +++++----- NEWS.md |only R/historical.R | 47 +++++------------- R/query.R | 6 +- R/query_city.R | 2 R/utils.R | 56 +++++++++++++++++++-- README.md | 123 ++++++++++++++++++++++++++++-------------------- man/comex_export.Rd | 2 man/comex_historical.Rd | 34 ++----------- man/comex_import.Rd | 2 man/comex_query.Rd | 2 man/comex_query_city.Rd | 2 man/figures |only 15 files changed, 170 insertions(+), 141 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-03-02 0.2.3
2026-02-01 0.2.2
2026-01-24 0.2.1
2025-10-14 0.2.0
2025-04-02 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-03-02 0.2.3
2026-02-05 0.2.2
2026-01-24 0.2.1
2025-10-12 0.2.0
2025-06-27 0.1.2
2025-05-27 0.1.1
2025-04-15 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-03-10 0.3.6
2026-03-02 0.3.5
2026-02-01 0.3.4
2026-01-21 0.3.3
2025-11-25 0.3.2
2025-10-30 0.3.1
2025-10-14 0.3.0
2025-06-27 0.2.4
2025-06-05 0.2.3
2025-04-01 0.2.1
2025-03-25 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-03-02 0.2.3
2026-02-01 0.2.2
2026-01-24 0.2.1
2025-10-14 0.2.0
2025-04-07 0.1.0
Title: Customizing Structural Equation Modelling Plots
Description: Most function focus on specific ways to customize a graph.
They use a 'qgraph' output as the first argument, and return a
modified 'qgraph' object. This allows the functions to be chained
by a pipe operator.
Author: Shu Fai Cheung [aut, cre] ,
Mark Hok Chio Lai [aut]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between semptools versions 0.3.2 dated 2025-07-12 and 0.3.3 dated 2026-03-17
DESCRIPTION | 8 MD5 | 45 ++-- NAMESPACE | 1 NEWS.md | 20 + R/helpers.R | 12 - R/mark_se.R | 257 +++++++++++++++-------- R/set_edge_label_position.R | 12 + R/set_sem_layout.R | 21 + README.md | 2 build/vignette.rds |binary inst/doc/keep_or_drop_nodes.html | 12 - inst/doc/layout_matrix.html | 24 +- inst/doc/quick_start_cfa.html | 16 - inst/doc/quick_start_sem.html | 16 - inst/doc/second_order.html | 10 inst/doc/semptools.R | 4 inst/doc/semptools.Rmd | 7 inst/doc/semptools.html | 287 +++++++++++++------------- man/mark_se.Rd | 100 +++++---- tests/testthat/test-mark.R | 14 + tests/testthat/test-mark_mg.R | 28 ++ tests/testthat/test-mark_se_std.R | 23 +- tests/testthat/test-set_edge_label_position.R |only vignettes/semptools.Rmd | 7 24 files changed, 573 insertions(+), 353 deletions(-)
Title: Fisheries Analysis and Modeling Simulator
Description: Simulates the dynamics of exploited fish populations using the Jones modification of the Beverton-Holt
equilibrium yield equation to compute yield-per-recruit and dynamic pool models (Ricker 1975)
<https://publications.gc.ca/site/eng/480738/publication.html>.
Allows users to evaluate minimum, slot, and inverted length limits on exploited fisheries using
specified life history parameters. Users can simulate population under a variety of conditional fishing mortality
and conditional natural mortality. Calculated quantities include number of fish harvested and dying naturally,
mean weight and length of fish harvested, number of fish that reach specified lengths of interest, total number
of fish and biomass in the population, and stock density indices.
Author: Jason C. Doll [aut, cre],
Derek H. Ogle [aut]
Maintainer: Jason C. Doll <jcdoll20@hotmail.com>
Diff between rFAMS versions 0.0.2 dated 2026-02-10 and 0.0.3 dated 2026-03-17
rFAMS-0.0.2/rFAMS/R/dpmBH.R |only rFAMS-0.0.2/rFAMS/R/yprBH_MinLL_fixed.R |only rFAMS-0.0.2/rFAMS/R/yprBH_MinLL_var.R |only rFAMS-0.0.2/rFAMS/man/dpmBH.Rd |only rFAMS-0.0.2/rFAMS/man/rFAMS-internals.Rd |only rFAMS-0.0.2/rFAMS/man/yprBH_SlotLL.R.Rd |only rFAMS-0.0.2/rFAMS/man/yprBH_minLL_fixed.Rd |only rFAMS-0.0.2/rFAMS/man/yprBH_minLL_var.Rd |only rFAMS-0.0.2/rFAMS/man/yprBH_slot_function.Rd |only rFAMS-0.0.2/rFAMS/tests/testthat/test_ypr_func.R |only rFAMS-0.0.3/rFAMS/DESCRIPTION | 8 rFAMS-0.0.3/rFAMS/MD5 | 97 + rFAMS-0.0.3/rFAMS/NAMESPACE | 12 rFAMS-0.0.3/rFAMS/NEWS.md | 17 rFAMS-0.0.3/rFAMS/R/MakeLH.R | 90 - rFAMS-0.0.3/rFAMS/R/dpmBH_MinLL.R |only rFAMS-0.0.3/rFAMS/R/dpmBH_func.R | 126 - rFAMS-0.0.3/rFAMS/R/est_natmort.R | 5 rFAMS-0.0.3/rFAMS/R/gen_recruitment.R | 238 ++- rFAMS-0.0.3/rFAMS/R/rFAMS-internals.R | 986 ++++++++------ rFAMS-0.0.3/rFAMS/R/seeMorts.R |only rFAMS-0.0.3/rFAMS/R/yprBH_MinLL.R |only rFAMS-0.0.3/rFAMS/R/yprBH_SlotLL.R | 234 +-- rFAMS-0.0.3/rFAMS/R/yprBH_func.R | 201 --- rFAMS-0.0.3/rFAMS/R/yprBH_slot_func.R | 360 ++--- rFAMS-0.0.3/rFAMS/README.md | 147 -- rFAMS-0.0.3/rFAMS/man/STOP.Rd |only rFAMS-0.0.3/rFAMS/man/WARN.Rd |only rFAMS-0.0.3/rFAMS/man/dpmBH_MinLL.Rd |only rFAMS-0.0.3/rFAMS/man/dpmBH_func.Rd | 70 - rFAMS-0.0.3/rFAMS/man/figures/rFAMSLogo.png |only rFAMS-0.0.3/rFAMS/man/genRecruits.Rd | 71 - rFAMS-0.0.3/rFAMS/man/iCheckCondMort.Rd |only rFAMS-0.0.3/rFAMS/man/iCheckCondMort2.Rd |only rFAMS-0.0.3/rFAMS/man/iCheckK.Rd |only rFAMS-0.0.3/rFAMS/man/iCheckLHparms.Rd |only rFAMS-0.0.3/rFAMS/man/iCheckLWa.Rd |only rFAMS-0.0.3/rFAMS/man/iCheckLWb.Rd |only rFAMS-0.0.3/rFAMS/man/iCheckLinf.Rd |only rFAMS-0.0.3/rFAMS/man/iCheckMLH.Rd |only rFAMS-0.0.3/rFAMS/man/iCheckMaxAge.Rd |only rFAMS-0.0.3/rFAMS/man/iCheckN0.Rd |only rFAMS-0.0.3/rFAMS/man/iCheckRecruitmentTL.Rd |only rFAMS-0.0.3/rFAMS/man/iCheckSlotTL.Rd |only rFAMS-0.0.3/rFAMS/man/iCheckSlotType.Rd |only rFAMS-0.0.3/rFAMS/man/iChecklabel.Rd |only rFAMS-0.0.3/rFAMS/man/iCheckloi.Rd |only rFAMS-0.0.3/rFAMS/man/iCheckrec.Rd |only rFAMS-0.0.3/rFAMS/man/iChecksimyears.Rd |only rFAMS-0.0.3/rFAMS/man/iCheckt0.Rd |only rFAMS-0.0.3/rFAMS/man/iErrGT.Rd |only rFAMS-0.0.3/rFAMS/man/iErrLT.Rd |only rFAMS-0.0.3/rFAMS/man/iErrMore1.Rd |only rFAMS-0.0.3/rFAMS/man/iErrNotNumeric.Rd |only rFAMS-0.0.3/rFAMS/man/iErrNotVector.Rd |only rFAMS-0.0.3/rFAMS/man/iHndlArgName.Rd |only rFAMS-0.0.3/rFAMS/man/iIbeta.Rd |only rFAMS-0.0.3/rFAMS/man/is.wholenumber.Rd |only rFAMS-0.0.3/rFAMS/man/makeLH.Rd | 66 rFAMS-0.0.3/rFAMS/man/seeMorts.Rd |only rFAMS-0.0.3/rFAMS/man/yprBH_MinLL.Rd |only rFAMS-0.0.3/rFAMS/man/yprBH_SlotLL.Rd |only rFAMS-0.0.3/rFAMS/man/yprBH_func.Rd | 74 - rFAMS-0.0.3/rFAMS/man/yprBH_slot_func.Rd |only rFAMS-0.0.3/rFAMS/tests/testthat/datasnaps |only rFAMS-0.0.3/rFAMS/tests/testthat/test_dpmBH_MinLL.R |only rFAMS-0.0.3/rFAMS/tests/testthat/test_genRecruits.R |only rFAMS-0.0.3/rFAMS/tests/testthat/test_makeLH.R | 161 +- rFAMS-0.0.3/rFAMS/tests/testthat/test_rFAMS-internals.R | 1060 ++++++++++++++-- rFAMS-0.0.3/rFAMS/tests/testthat/test_seeMorts.R |only rFAMS-0.0.3/rFAMS/tests/testthat/test_yprBH_MinLL.R |only rFAMS-0.0.3/rFAMS/tests/testthat/test_yprBH_SlotLL.R |only rFAMS-0.0.3/rFAMS/tests/testthat/test_yprBH_func.R |only rFAMS-0.0.3/rFAMS/tests/testthat/test_yprBH_slot_func.R |only 74 files changed, 2390 insertions(+), 1633 deletions(-)
Title: R Analyzer for Large-Scale Assessments
Description: Download, prepare and analyze data from large-scale assessments and
surveys with complex sampling and assessment design (see 'Rutkowski',
2010 <doi:10.3102/0013189X10363170>). Such studies are, for example,
international assessments like 'TIMSS', 'PIRLS' and 'PISA'. A graphical
interface is available for the non-technical user.The package includes
functions to covert the original data from 'SPSS' into 'R' data sets
keeping the user-defined missing values, merge data from different
respondents and/or countries, generate variable dictionaries, modify
data, produce descriptive statistics (percentages, means, percentiles,
benchmarks) and multivariate statistics (correlations, linear
regression, binary logistic regression). The number of supported
studies and analysis types will increase in future. For a general
presentation of the package, see 'Mirazchiyski', 2021a
(<doi:10.1186/s40536-021-00114-4>). For detailed technical aspects of
the package, see 'Mirazchiyski', 2021b (< [...truncated...]
Author: Plamen V. Mirazchiyski [aut, cre],
INERI [aut]
Maintainer: Plamen V. Mirazchiyski <plamen.mirazchiyski@ineri.org>
Diff between RALSA versions 1.6.2 dated 2026-01-30 and 1.6.5 dated 2026-03-17
DESCRIPTION | 8 MD5 | 62 NEWS.md | 14 R/RALSA.r | 2 R/common.r | 7274 ++++++++-------- R/lsa.aggregate.vars.r | 35 R/lsa.bench.r | 22 R/lsa.bin.log.reg.r | 38 R/lsa.convert.data.r | 189 R/lsa.corr.r | 221 R/lsa.crosstabs.r | 755 - R/lsa.data.diag.r | 392 R/lsa.download.data.r | 478 - R/lsa.lin.reg.r | 44 R/lsa.merge.data.r | 463 - R/lsa.pcts.means.r | 40 R/lsa.prctls.r | 40 R/lsa.vars.dict.r | 157 inst/shiny/GUI/server.r |20582 +++++++++++++++++++++++----------------------- inst/shiny/GUI/ui.r | 5017 +++++------ man/RALSA.Rd | 2 man/lsa.aggregate.vars.Rd | 4 man/lsa.bench.Rd | 3 man/lsa.bin.log.reg.Rd | 3 man/lsa.corr.Rd | 9 man/lsa.crosstabs.Rd | 3 man/lsa.data.diag.Rd | 2 man/lsa.download.data.Rd | 7 man/lsa.lin.reg.Rd | 9 man/lsa.merge.data.Rd | 3 man/lsa.pcts.means.Rd | 3 man/lsa.prctls.Rd | 3 32 files changed, 18157 insertions(+), 17727 deletions(-)
Title: Multi-Level Vector Autoregression
Description: Estimates the multi-level vector autoregression model on time-series data.
Three network structures are obtained: temporal networks, contemporaneous
networks and between-subjects networks.
Author: Sacha Epskamp [aut, cre],
Marie K. Deserno [aut],
Laura F. Bringmann [aut],
Myrthe Veenman [ctb],
Jonas M. B. Haslbeck [ctb]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between mlVAR versions 0.5.5 dated 2026-02-06 and 0.6.1 dated 2026-03-17
DESCRIPTION | 12 MD5 | 39 +- NAMESPACE | 16 - NEWS | 18 + R/Mplus.R | 2 R/S3Methods.R | 771 +++++++++++++++++++++++++++++++++++++++++++++++++ R/effects.R | 4 R/importMplus.R | 2 R/leastSquares_mlVAR.R | 6 R/lm_mlVAR.R | 2 R/lmer_mlGGM.R |only R/lmer_murmur.R | 10 R/mlGGM.R |only R/mlVAR.R | 56 ++- R/mlVARcompare.R | 2 R/mlVARmodel.R | 6 R/mlVARsamplesize.R | 4 R/modelMatrix.R | 2 R/movingWindow.R | 18 - R/stepWise.R | 2 man/mlGGM.Rd |only man/mlVAR.Rd | 92 +++++ 22 files changed, 994 insertions(+), 70 deletions(-)
Title: Iteratively Reweighted Boosting for Robust Analysis
Description: Fit a predictive model using iteratively reweighted boosting (IRBoost) to minimize robust loss functions within the CC-family (concave-convex). This constitutes an application of iteratively reweighted convex optimization (IRCO), where convex optimization is performed using the functional descent boosting algorithm. IRBoost assigns weights to facilitate outlier identification. Applications include robust generalized linear models and robust accelerated failure time models. Wang (2025) <doi:10.6339/24-JDS1138>.
Author: Zhu Wang [aut, cre]
Maintainer: Zhu Wang <zwang145@uthsc.edu>
Diff between irboost versions 0.2-1.0 dated 2025-02-04 and 0.2-1.1 dated 2026-03-17
irboost-0.2-1.0/irboost/inst/doc/static_irbst.pdf |only irboost-0.2-1.0/irboost/inst/doc/static_irbst.pdf.asis |only irboost-0.2-1.0/irboost/vignettes/irbst_code_files |only irboost-0.2-1.0/irboost/vignettes/static_irbst.pdf.asis |only irboost-0.2-1.1/irboost/DESCRIPTION | 16 +-- irboost-0.2-1.1/irboost/MD5 | 43 +++----- irboost-0.2-1.1/irboost/NAMESPACE | 1 irboost-0.2-1.1/irboost/NEWS | 52 ++++++++++ irboost-0.2-1.1/irboost/R/dataLS.R | 2 irboost-0.2-1.1/irboost/R/irb.train.R | 58 +++++++---- irboost-0.2-1.1/irboost/R/irb.train_aft.R | 36 +++++-- irboost-0.2-1.1/irboost/R/irboost.R | 77 +++++++++------ irboost-0.2-1.1/irboost/R/predict.irboost_model.R |only irboost-0.2-1.1/irboost/R/xgboost_helpers.R |only irboost-0.2-1.1/irboost/build/vignette.rds |binary irboost-0.2-1.1/irboost/inst/doc/static_irbst.html |only irboost-0.2-1.1/irboost/inst/doc/static_irbst.html.asis |only irboost-0.2-1.1/irboost/man/dataLS.Rd | 2 irboost-0.2-1.1/irboost/man/irb.train.Rd | 22 ++-- irboost-0.2-1.1/irboost/man/irb.train_aft.Rd | 21 +++- irboost-0.2-1.1/irboost/man/irboost.Rd | 28 +++-- irboost-0.2-1.1/irboost/vignettes/static_irbst.html.asis |only 22 files changed, 241 insertions(+), 117 deletions(-)
Title: Estimate Latent Classes on a Mixture of Continuous and
Dichotomous Data
Description: The hybrid model likelihood as described by Ramos-Goñi et al. (2017) <doi:10.1097/MLR.0000000000000283> is implemented and
and embedded in a latent class framework. The package is based on 'flexmix' and among others contains an M-step-driver as described by Leisch (2004) <doi:10.18637/jss.v011.i08>.
Users can, for example, estimate latent classes for EQ-5D value sets and address preference heterogeneity. Both uncensored and censored data are supported.
Furthermore, heteroscedasticity can be taken into account. It is possible to control for different covariates on the continuous and dichotomous data and start values can differ
between the expected latent classes.
Author: Svenja Elkenkamp [aut, cre],
Kim Rand [aut],
John Grosser [aut],
EuroQol [fnd]
Maintainer: Svenja Elkenkamp <svenja.elkenkamp@uni-bielefeld.de>
Diff between hyreg2 versions 1.1.1 dated 2026-01-13 and 1.1.2 dated 2026-03-17
DESCRIPTION | 15 ++--- MD5 | 10 +-- R/FLXMRhyreg.R | 127 +++++++++++++++++------------------------- R/FLXMRhyreg_het.R | 86 ++++++++++++++--------------- R/hyreg2.R | 157 +++++++++++++++++++++++++++++++---------------------- R/hyreg2_het.R | 122 ++++++++++++++++++++++++----------------- 6 files changed, 275 insertions(+), 242 deletions(-)
Title: A Multi-Modal Simulator for Spearheading Single-Cell Omics
Analyses
Description: A novel, multi-modal simulation engine for
studying dynamic cellular processes at single-cell resolution. 'dyngen'
is more flexible than current single-cell simulation engines. It
allows better method development and benchmarking, thereby stimulating
development and testing of novel computational methods. Cannoodt et
al. (2021) <doi:10.1038/s41467-021-24152-2>.
Author: Robrecht Cannoodt [aut, cre, cph] ,
Wouter Saelens [aut]
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between dyngen versions 1.0.5 dated 2022-10-12 and 1.1.0 dated 2026-03-17
dyngen-1.0.5/dyngen/R/ggforce_issue_273_workaround.R |only dyngen-1.0.5/dyngen/man/dyngen.Rd |only dyngen-1.1.0/dyngen/DESCRIPTION | 31 dyngen-1.1.0/dyngen/MD5 | 113 +- dyngen-1.1.0/dyngen/NAMESPACE | 20 dyngen-1.1.0/dyngen/NEWS.md | 52 + dyngen-1.1.0/dyngen/R/0a_backbone.R | 108 +- dyngen-1.1.0/dyngen/R/0b_modnet_pieces.R | 17 dyngen-1.1.0/dyngen/R/0c_backbone_lego.R | 167 +-- dyngen-1.1.0/dyngen/R/0d_backbones.R | 191 ++- dyngen-1.1.0/dyngen/R/1_initialisation.R | 60 - dyngen-1.1.0/dyngen/R/2_tf_network.R | 108 +- dyngen-1.1.0/dyngen/R/3_feature_network.R | 230 ++-- dyngen-1.1.0/dyngen/R/4_kinetics.R | 255 ++--- dyngen-1.1.0/dyngen/R/5_gold_standard.R | 174 +-- dyngen-1.1.0/dyngen/R/6_simulation.R | 298 +++--- dyngen-1.1.0/dyngen/R/7_experiment.R | 256 ++--- dyngen-1.1.0/dyngen/R/8_convert.R | 263 ++--- dyngen-1.1.0/dyngen/R/caching.R | 14 dyngen-1.1.0/dyngen/R/colour_brighten.R | 4 dyngen-1.1.0/dyngen/R/combine_models.R | 46 dyngen-1.1.0/dyngen/R/data-example_model.R | 6 dyngen-1.1.0/dyngen/R/data-realnet.R | 10 dyngen-1.1.0/dyngen/R/dimred.R | 52 - dyngen-1.1.0/dyngen/R/generate_dataset.R | 58 - dyngen-1.1.0/dyngen/R/generate_partitions.R | 24 dyngen-1.1.0/dyngen/R/package.R | 69 - dyngen-1.1.0/dyngen/R/plotting.R | 491 +++++----- dyngen-1.1.0/dyngen/R/random_generators.R | 28 dyngen-1.1.0/dyngen/R/reexports.R | 3 dyngen-1.1.0/dyngen/R/simtime_from_backbone.R | 24 dyngen-1.1.0/dyngen/R/timings.R | 21 dyngen-1.1.0/dyngen/README.md | 46 dyngen-1.1.0/dyngen/build/vignette.rds |binary dyngen-1.1.0/dyngen/data/example_model.rda |binary dyngen-1.1.0/dyngen/inst/CITATION | 4 dyngen-1.1.0/dyngen/man/backbone.Rd | 2 dyngen-1.1.0/dyngen/man/backbone_models.Rd | 8 dyngen-1.1.0/dyngen/man/convert.Rd | 2 dyngen-1.1.0/dyngen/man/dyngen-package.Rd |only dyngen-1.1.0/dyngen/man/generate_cells.Rd | 6 dyngen-1.1.0/dyngen/man/generate_dataset.Rd | 6 dyngen-1.1.0/dyngen/man/generate_experiment.Rd | 4 dyngen-1.1.0/dyngen/man/generate_feature_network.Rd | 8 dyngen-1.1.0/dyngen/man/generate_gold_standard.Rd | 6 dyngen-1.1.0/dyngen/man/generate_kinetics.Rd | 6 dyngen-1.1.0/dyngen/man/generate_tf_network.Rd | 8 dyngen-1.1.0/dyngen/man/plot_experiment_dimred.Rd | 2 dyngen-1.1.0/dyngen/man/plot_gold_mappings.Rd | 2 dyngen-1.1.0/dyngen/man/plot_gold_simulations.Rd | 2 dyngen-1.1.0/dyngen/man/plot_simulations.Rd | 2 dyngen-1.1.0/dyngen/man/reexports.Rd | 3 dyngen-1.1.0/dyngen/tests/testthat.R | 1 dyngen-1.1.0/dyngen/tests/testthat/7_experiment.R | 10 dyngen-1.1.0/dyngen/tests/testthat/test-1_initialisation.R | 6 dyngen-1.1.0/dyngen/tests/testthat/test-2_backbone.R | 18 dyngen-1.1.0/dyngen/tests/testthat/test-combine_models.R | 36 dyngen-1.1.0/dyngen/tests/testthat/test-generate_dataset.R | 24 dyngen-1.1.0/dyngen/tests/testthat/test-generate_partitions.R | 27 59 files changed, 1758 insertions(+), 1674 deletions(-)
Title: Estimation in Difference-in-Difference Designs with Multiple
Groups and Periods
Description: Estimation of heterogeneity-robust difference-in-differences estimators, with a binary, discrete, or continuous treatment, in designs where past treatments may affect the current outcome.
Author: Anzony Quispe [aut, cre],
Diego Ciccia [aut],
Felix Knau [aut],
Melitine Malezieux [aut],
Doulo Sow [aut],
Clement de Chaisemartin [aut]
Maintainer: Anzony Quispe <anzony.quispe@gmail.com>
Diff between DIDmultiplegtDYN versions 2.3.2 dated 2026-03-05 and 2.3.3 dated 2026-03-17
DESCRIPTION | 6 +- MD5 | 6 +- R/did_multiplegt_dyn.R | 6 ++ R/did_multiplegt_main.R | 98 +++++++++++++++++++++++++++++++++++++++++++++--- 4 files changed, 105 insertions(+), 11 deletions(-)
More information about DIDmultiplegtDYN at CRAN
Permanent link
Title: Tidy Integration of Large Language Models
Description: A tidy interface for integrating large language model (LLM) APIs such as 'Claude', 'Openai', 'Gemini','Mistral' and local models via 'Ollama' into R workflows. The package supports text and media-based interactions, interactive message history, batch request APIs, and a tidy, pipeline-oriented interface for streamlined integration into data workflows. Web services are available at <https://www.anthropic.com>, <https://openai.com>, <https://aistudio.google.com/>, <https://mistral.ai/> and <https://ollama.com>.
Author: Eduard Bruell [aut, cre],
Jia Zhang [ctb]
Maintainer: Eduard Bruell <eduard.bruell@zew.de>
Diff between tidyllm versions 0.3.5 dated 2025-08-22 and 0.4.0 dated 2026-03-17
tidyllm-0.3.5/tidyllm/tests/testthat/groq/api.groq.com/openai/v1/chat/completions-adc488-POST.R |only tidyllm-0.3.5/tidyllm/tests/testthat/openai/api.openai.com/v1/chat/completions-2f9822-POST.R |only tidyllm-0.3.5/tidyllm/tests/testthat/openai_schema_multiple/api.openai.com/v1/chat/completions-bcf1e3-POST.R |only tidyllm-0.3.5/tidyllm/tests/testthat/openai_schema_single/api.openai.com/v1/chat/completions-157f25-POST.R |only tidyllm-0.3.5/tidyllm/tests/testthat/voyage_embedding_text/api.voyageai.com/v1/embeddings-2b80fd-POST.json |only tidyllm-0.4.0/tidyllm/DESCRIPTION | 12 tidyllm-0.4.0/tidyllm/MD5 | 141 - tidyllm-0.4.0/tidyllm/NAMESPACE | 28 tidyllm-0.4.0/tidyllm/NEWS.md | 144 + tidyllm-0.4.0/tidyllm/R/LLMMessage.R | 2 tidyllm-0.4.0/tidyllm/R/api_azure_openai.R | 35 tidyllm-0.4.0/tidyllm/R/api_claude.R | 255 +- tidyllm-0.4.0/tidyllm/R/api_deepseek.R | 44 tidyllm-0.4.0/tidyllm/R/api_ellmer.R |only tidyllm-0.4.0/tidyllm/R/api_gemini.R | 210 + tidyllm-0.4.0/tidyllm/R/api_groq.R | 169 + tidyllm-0.4.0/tidyllm/R/api_llamacpp.R |only tidyllm-0.4.0/tidyllm/R/api_mistral.R | 37 tidyllm-0.4.0/tidyllm/R/api_ollama.R | 130 - tidyllm-0.4.0/tidyllm/R/api_openai.R | 57 tidyllm-0.4.0/tidyllm/R/api_openrouter.R |only tidyllm-0.4.0/tidyllm/R/api_perplexity.R | 375 +++ tidyllm-0.4.0/tidyllm/R/api_voyage.R | 109 tidyllm-0.4.0/tidyllm/R/llm_verbs.R | 213 + tidyllm-0.4.0/tidyllm/R/message_retrieval.R | 2 tidyllm-0.4.0/tidyllm/R/tools.R | 241 +- tidyllm-0.4.0/tidyllm/R/utilites.R | 27 tidyllm-0.4.0/tidyllm/README.md | 5 tidyllm-0.4.0/tidyllm/inst/doc/tidyllm.R | 420 +-- tidyllm-0.4.0/tidyllm/inst/doc/tidyllm.Rmd | 636 ++--- tidyllm-0.4.0/tidyllm/inst/doc/tidyllm.html | 1120 +++------- tidyllm-0.4.0/tidyllm/man/azure_openai_chat.Rd | 5 tidyllm-0.4.0/tidyllm/man/chat.Rd | 3 tidyllm-0.4.0/tidyllm/man/chat_ellmer.Rd |only tidyllm-0.4.0/tidyllm/man/chatgpt.Rd | 1 tidyllm-0.4.0/tidyllm/man/check_job.Rd |only tidyllm-0.4.0/tidyllm/man/claude_chat.Rd | 10 tidyllm-0.4.0/tidyllm/man/claude_websearch.Rd |only tidyllm-0.4.0/tidyllm/man/deep_research.Rd |only tidyllm-0.4.0/tidyllm/man/deepseek_chat.Rd | 9 tidyllm-0.4.0/tidyllm/man/ellmer.Rd |only tidyllm-0.4.0/tidyllm/man/ellmer_tool.Rd |only tidyllm-0.4.0/tidyllm/man/fetch_job.Rd |only tidyllm-0.4.0/tidyllm/man/gemini_chat.Rd | 9 tidyllm-0.4.0/tidyllm/man/gemini_embedding.Rd | 2 tidyllm-0.4.0/tidyllm/man/gemini_list_models.Rd |only tidyllm-0.4.0/tidyllm/man/get_logprobs.Rd | 2 tidyllm-0.4.0/tidyllm/man/groq_chat.Rd | 12 tidyllm-0.4.0/tidyllm/man/groq_transcribe.Rd | 2 tidyllm-0.4.0/tidyllm/man/list_hf_gguf_files.Rd |only tidyllm-0.4.0/tidyllm/man/llamacpp.Rd |only tidyllm-0.4.0/tidyllm/man/llamacpp_chat.Rd |only tidyllm-0.4.0/tidyllm/man/llamacpp_delete_model.Rd |only tidyllm-0.4.0/tidyllm/man/llamacpp_download_model.Rd |only tidyllm-0.4.0/tidyllm/man/llamacpp_embedding.Rd |only tidyllm-0.4.0/tidyllm/man/llamacpp_health.Rd |only tidyllm-0.4.0/tidyllm/man/llamacpp_list_local_models.Rd |only tidyllm-0.4.0/tidyllm/man/llamacpp_list_models.Rd |only tidyllm-0.4.0/tidyllm/man/llamacpp_rerank.Rd |only tidyllm-0.4.0/tidyllm/man/mistral_chat.Rd | 6 tidyllm-0.4.0/tidyllm/man/ollama_chat.Rd | 11 tidyllm-0.4.0/tidyllm/man/ollama_embedding.Rd | 2 tidyllm-0.4.0/tidyllm/man/openai_chat.Rd | 10 tidyllm-0.4.0/tidyllm/man/openrouter.Rd |only tidyllm-0.4.0/tidyllm/man/openrouter_chat.Rd |only tidyllm-0.4.0/tidyllm/man/openrouter_credits.Rd |only tidyllm-0.4.0/tidyllm/man/openrouter_embedding.Rd |only tidyllm-0.4.0/tidyllm/man/openrouter_generation.Rd |only tidyllm-0.4.0/tidyllm/man/openrouter_list_models.Rd |only tidyllm-0.4.0/tidyllm/man/perplexity_chat.Rd | 62 tidyllm-0.4.0/tidyllm/man/perplexity_check_research.Rd |only tidyllm-0.4.0/tidyllm/man/perplexity_deep_research.Rd |only tidyllm-0.4.0/tidyllm/man/perplexity_fetch_research.Rd |only tidyllm-0.4.0/tidyllm/man/send_claude_batch.Rd | 4 tidyllm-0.4.0/tidyllm/man/send_groq_batch.Rd | 6 tidyllm-0.4.0/tidyllm/man/send_ollama_batch.Rd | 4 tidyllm-0.4.0/tidyllm/man/send_openai_batch.Rd | 4 tidyllm-0.4.0/tidyllm/man/voyage_embedding.Rd | 7 tidyllm-0.4.0/tidyllm/man/voyage_rerank.Rd |only tidyllm-0.4.0/tidyllm/tests/testthat/groq/api.groq.com/openai/v1/chat/completions-0b59b0-POST.R |only tidyllm-0.4.0/tidyllm/tests/testthat/openai/api.openai.com/v1/chat/completions-8333f0-POST.R |only tidyllm-0.4.0/tidyllm/tests/testthat/openai_embedding/api.openai.com/v1/embeddings-f9bc92-POST.R | 14 tidyllm-0.4.0/tidyllm/tests/testthat/openai_models/api.openai.com/v1/models.R | 13 tidyllm-0.4.0/tidyllm/tests/testthat/openai_schema_multiple/api.openai.com/v1/chat/completions-d285ac-POST.R |only tidyllm-0.4.0/tidyllm/tests/testthat/openai_schema_single/api.openai.com/v1/chat/completions-18eb9b-POST.R |only tidyllm-0.4.0/tidyllm/tests/testthat/test_api_gemini.R | 75 tidyllm-0.4.0/tidyllm/tests/testthat/test_api_groq.R | 4 tidyllm-0.4.0/tidyllm/tests/testthat/test_api_ollama.R | 4 tidyllm-0.4.0/tidyllm/tests/testthat/test_api_openai.R | 5 tidyllm-0.4.0/tidyllm/tests/testthat/test_api_perplexity.R | 48 tidyllm-0.4.0/tidyllm/tests/testthat/voyage_embedding_text/api.voyageai.com/v1/embeddings-50dc58-POST.json |only tidyllm-0.4.0/tidyllm/vignettes/tidyllm.Rmd | 636 ++--- 92 files changed, 2985 insertions(+), 2397 deletions(-)
Title: Computer Simulations of 'SNP' Data
Description: Allows to simulate SNP data using genlight objects. For example, it is straight forward to simulate a simple drift scenario with exchange of individuals between two populations or create a new genlight object based on allele frequencies of an existing genlight object.
Author: Jose L. Mijangos [aut, cre],
Bernd Gruber [aut],
Arthur Georges [aut],
Carlo Pacioni [aut],
Diana Robledo-Ruiz [aut],
Peter J. Unmack [ctb],
Oliver Berry [ctb]
Maintainer: Jose L. Mijangos <luis.mijangos@gmail.com>
Diff between dartR.sim versions 0.71 dated 2025-11-14 and 1.2.2 dated 2026-03-17
DESCRIPTION | 21 +++++++++++---------- MD5 | 22 +++++++++++----------- NAMESPACE | 2 +- R/gl.sim.WF.run.r | 2 ++ R/gl.sim.WF.table.r | 2 ++ R/gl.sim.ind.af.r | 8 +++++--- R/zzz.r | 2 +- inst/extdata/ref_variables.csv | 2 +- inst/extdata/sim_variables.csv | 14 +++++++------- man/gl.sim.WF.run.Rd | 2 ++ man/gl.sim.WF.table.Rd | 2 ++ man/gl.sim.ind.af.Rd | 7 +++++-- 12 files changed, 50 insertions(+), 36 deletions(-)
Title: Nonnegative Matrix Factorization
Description: Nonnegative matrix factorization (NMF) is a technique to factorize a matrix with nonnegative values into the product of two matrices. Covariates are also allowed. Parallel computing is an option to enhance the speed and high-dimensional and large scale (and/or sparse) data are allowed. Relevant papers include: Wang Y. X. and Zhang Y. J. (2012). Nonnegative matrix factorization: A comprehensive review. IEEE Transactions on Knowledge and Data Engineering, 25(6): 1336-1353 <doi:10.1109/TKDE.2012.51> and Kim H. and Park H. (2008). Nonnegative matrix factorization based on alternating nonnegativity constrained least squares and active set method. SIAM Journal on Matrix Analysis and Applications, 30(2): 713-730 <doi:10.1137/07069239X>.
Author: Michail Tsagris [aut, cre],
Nikolaos Kontemeniotis [aut],
Christos Adam [aut]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between nnmf versions 1.1 dated 2026-02-03 and 1.3 dated 2026-03-17
DESCRIPTION | 26 ++-- MD5 | 37 +++-- NAMESPACE | 18 ++ R/RcppExports.R |only R/init.R | 22 +-- R/nmf.hals.R |only R/nmf.manh.R | 1 R/nmf.qp.R | 337 +++++++++++++++++++++++++++++++++++----------------- R/nmf.sqp.R | 35 ++--- R/nmfqp.cv.R |only R/nmfqp.pred.R |only R/nmfqp.reg.R | 16 +- man/init.Rd | 29 ---- man/nmf.hals.Rd |only man/nmf.manh.Rd | 4 man/nmf.qp.Rd | 11 - man/nmf.sqp.Rd | 9 - man/nmfqp.cv.Rd |only man/nmfqp.pred.Rd |only man/nmfqp.reg.Rd | 4 man/nnmf-package.Rd | 16 +- src |only 22 files changed, 343 insertions(+), 222 deletions(-)
Title: Methods Based on the e-Closure Principle
Description: Implements several methods for False Discovery Rate control based on the e-Closure Principle,
in particular the Closed e-Benjamini-Hochberg and Closed Benjamini-Yekutieli procedures.
Author: Jelle Goeman [aut, cre]
Maintainer: Jelle Goeman <j.j.goeman@lumc.nl>
Diff between eClosure versions 0.9.2 dated 2026-03-09 and 0.9.3 dated 2026-03-17
ChangeLog | 5 ++++- DESCRIPTION | 6 +++--- MD5 | 8 ++++---- src/cBY.cpp | 7 ++++--- tests/testthat/test_BY.R | 29 +++++++++++++++++++++++++++++ 5 files changed, 44 insertions(+), 11 deletions(-)
Title: Tidy Tools for Forecasting
Description: Tidies up the forecasting modeling and prediction work flow,
extends the 'broom' package
with 'sw_tidy', 'sw_glance', 'sw_augment', and 'sw_tidy_decomp' functions
for various forecasting models,
and enables converting 'forecast' objects to
"tidy" data frames with 'sw_sweep'.
Author: Matt Dancho [aut, cre],
Davis Vaughan [aut]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between sweep versions 0.2.6 dated 2025-08-28 and 0.2.7 dated 2026-03-17
DESCRIPTION | 8 MD5 | 24 - NEWS.md | 8 build/vignette.rds |binary inst/doc/SW00_Introduction_to_sweep.R | 36 - inst/doc/SW00_Introduction_to_sweep.Rmd | 41 +- inst/doc/SW00_Introduction_to_sweep.html | 432 +++++++++++----------- inst/doc/SW01_Forecasting_Time_Series_Groups.html | 380 +++++++++---------- inst/doc/SW02_Forecasting_Multiple_Models.R | 50 +- inst/doc/SW02_Forecasting_Multiple_Models.Rmd | 58 +- inst/doc/SW02_Forecasting_Multiple_Models.html | 313 +++++++-------- vignettes/SW00_Introduction_to_sweep.Rmd | 41 +- vignettes/SW02_Forecasting_Multiple_Models.Rmd | 58 +- 13 files changed, 731 insertions(+), 718 deletions(-)
Title: Access 'Office for Budget Responsibility' Data
Description: Provides clean, tidy access to data published by the 'Office for
Budget Responsibility' ('OBR'), the UK's independent fiscal watchdog. Covers
the Public Finances Databank (outturn for PSNB, PSND, receipts, and
expenditure since 1946), the Historical Official Forecasts Database (every
'OBR' forecast since 2010), the Economic and Fiscal Outlook detailed forecast
tables (five-year projections from the latest Budget), the Welfare Trends
Report (incapacity benefit spending and caseloads), and the Fiscal Risks and
Sustainability Report (50-year state pension projections). Data is downloaded
from the 'OBR' on first use and cached locally for subsequent calls. Data is
sourced from the 'OBR' website <https://obr.uk>.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between obr versions 0.2.2 dated 2026-03-12 and 0.2.4 dated 2026-03-17
DESCRIPTION | 20 +++++++-------- MD5 | 51 ++++++++++++++++++++------------------- NEWS.md | 10 +++++++ R/efo.R | 7 +++++ R/fiscal_sustainability.R | 3 ++ R/forecasts.R | 4 +++ R/obr-package.R |only R/public_finances.R | 15 +++++++++++ R/utils.R | 31 +++++++++++++++++++---- R/welfare.R | 9 ++++++ README.md | 47 +++++++++++++++++++++++++---------- inst/CITATION |only man/clear_cache.Rd | 3 ++ man/get_efo_economy.Rd | 8 ++++++ man/get_efo_fiscal.Rd | 8 ++++++ man/get_expenditure.Rd | 10 +++++++ man/get_forecasts.Rd | 7 +++++ man/get_incapacity_caseloads.Rd | 8 ++++++ man/get_incapacity_spending.Rd | 8 ++++++ man/get_pension_projections.Rd | 3 ++ man/get_psnb.Rd | 10 +++++++ man/get_psnd.Rd | 10 +++++++ man/get_public_finances.Rd | 10 +++++++ man/get_receipts.Rd | 10 +++++++ man/get_welfare_spending.Rd | 8 ++++++ man/list_efo_economy_measures.Rd | 6 ++++ man/list_forecast_series.Rd | 5 +++ man/obr-package.Rd |only 28 files changed, 258 insertions(+), 53 deletions(-)
Title: Hyperband for 'mlr3'
Description: Successive Halving (Jamieson and Talwalkar (2016)
<doi:10.48550/arXiv.1502.07943>) and Hyperband (Li et al. 2018
<doi:10.48550/arXiv.1603.06560>) optimization algorithm for the mlr3
ecosystem. The implementation in mlr3hyperband features improved
scheduling and parallelizes the evaluation of configurations. The
package includes tuners for hyperparameter optimization in mlr3tuning
and optimizers for black-box optimization in bbotk.
Author: Marc Becker [aut, cre] ,
Sebastian Gruber [aut] ,
Jakob Richter [aut] ,
Julia Moosbauer [aut] ,
Bernd Bischl [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3hyperband versions 1.0.0 dated 2025-07-10 and 1.1.0 dated 2026-03-17
DESCRIPTION | 14 MD5 | 40 +- NEWS.md | 6 R/OptimizerAsyncSuccessiveHalving.R | 55 ++- R/OptimizerBatchHyperband.R | 50 +- R/OptimizerBatchSuccessiveHalving.R | 46 +- R/TunerAsyncSuccessiveHalving.R | 4 R/TunerBatchHyperband.R | 4 R/TunerBatchSuccessiveHalving.R | 4 R/bibentries.R | 51 +- R/helper.R | 4 R/zzz.R | 9 README.md |only build/partial.rdb |binary tests/testthat/helper.R | 77 ++-- tests/testthat/helper_rush.R |only tests/testthat/setup.R | 9 tests/testthat/teardown.R | 1 tests/testthat/test_TunerAsyncSuccessiveHalving.R | 396 ++++++++++++---------- tests/testthat/test_TunerBatchHyperband.R | 195 +++++----- tests/testthat/test_TunerBatchSuccessiveHalving.R | 224 +++++------- tests/testthat/test_nds_selection.R | 35 + 22 files changed, 663 insertions(+), 561 deletions(-)
Title: Model Context Protocol Servers and Clients
Description: Implements the Model Context Protocol (MCP). Users can start
'R'-based servers, serving functions as tools for large language
models to call before responding to the user in MCP-compatible apps
like 'Claude Desktop' and 'Claude Code', with options to run those
tools inside of interactive 'R' sessions. On the other end, when 'R'
is the client via the 'ellmer' package, users can register tools from
third-party MCP servers to integrate additional context into chats.
Author: Simon Couch [aut, cre] ,
Winston Chang [aut] ,
Charlie Gao [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Simon Couch <simon.couch@posit.co>
Diff between mcptools versions 0.2.0 dated 2025-10-29 and 0.2.1 dated 2026-03-17
DESCRIPTION | 6 ++--- MD5 | 8 ++++--- NEWS.md | 7 ++++++ R/protocol-version.R |only R/server.R | 34 ++++++++++++++++++++++++++------- tests/testthat/test-protocol-version.R |only 6 files changed, 42 insertions(+), 13 deletions(-)
Title: Knowledge Discovery by Accuracy Maximization
Description: A self-guided, weakly supervised learning algorithm for feature extraction from noisy and
high-dimensional data. It facilitates the identification of patterns that reflect underlying group
structures across all samples in a dataset. The method incorporates a novel strategy to integrate
spatial information, improving the interpretability of results in spatially resolved data.
Author: Stefano Cacciatore [aut, trl, cre] ,
Leonardo Tenori [aut]
Maintainer: Stefano Cacciatore <tkcaccia@gmail.com>
This is a re-admission after prior archival of version 3.0 dated 2025-06-03
Diff between KODAMA versions 3.0 dated 2025-06-03 and 3.2 dated 2026-03-17
KODAMA-3.0/KODAMA/man/tsne.defaults.Rd |only KODAMA-3.0/KODAMA/man/umap.defaults.Rd |only KODAMA-3.2/KODAMA/DESCRIPTION | 11 KODAMA-3.2/KODAMA/MD5 | 40 - KODAMA-3.2/KODAMA/NAMESPACE | 43 - KODAMA-3.2/KODAMA/R/KOD.R | 1020 ++++++++++++++++---------- KODAMA-3.2/KODAMA/R/RcppExports.R | 28 KODAMA-3.2/KODAMA/README.md | 3 KODAMA-3.2/KODAMA/build/partial.rdb |binary KODAMA-3.2/KODAMA/build/vignette.rds |binary KODAMA-3.2/KODAMA/inst/benchmark |only KODAMA-3.2/KODAMA/inst/doc/KODAMA.pdf |binary KODAMA-3.2/KODAMA/inst/doc/index.html |only KODAMA-3.2/KODAMA/man/KODAMA.matrix.Rd | 162 +--- KODAMA-3.2/KODAMA/man/KODAMA.visualization.Rd | 7 KODAMA-3.2/KODAMA/man/USA.Rd | 2 KODAMA-3.2/KODAMA/man/config.tsne.default.Rd |only KODAMA-3.2/KODAMA/man/config.umap.default.Rd |only KODAMA-3.2/KODAMA/man/lymphoma.Rd | 2 KODAMA-3.2/KODAMA/man/pca.Rd | 63 - KODAMA-3.2/KODAMA/src/RcppExports.cpp | 110 +- KODAMA-3.2/KODAMA/src/kodama_irlba_pca.c |only KODAMA-3.2/KODAMA/src/prova.cpp | 25 KODAMA-3.2/KODAMA/tests |only 24 files changed, 885 insertions(+), 631 deletions(-)
Title: Kaplan-Meier Plot with 'ggplot2'
Description: The function 'jskm()' creates publication quality Kaplan-Meier plot with at risk tables below. 'svyjskm()' provides plot for weighted Kaplan-Meier estimator.
Author: Jinseob Kim [aut, cre] ,
yoonkyoung Chun [aut],
Zarathu [cph, fnd],
sungho Choi [aut],
Mingu Jee [aut],
Wonbin Hahn [aut],
Taehong Kim [aut],
Sangho Oh [aut],
Sewon Lee [aut]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jskm versions 0.6.1 dated 2026-02-11 and 0.6.2 dated 2026-03-17
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/jskm.R | 16 ++++++++++------ build/vignette.rds |binary inst/doc/jskm.html | 4 ++-- 6 files changed, 25 insertions(+), 17 deletions(-)
Title: Parameter Estimation of Item Response Theory with Estimation of
Latent Distribution
Description: Item response theory (IRT) parameter estimation using marginal maximum likelihood and expectation-maximization algorithm
(Bock \& Aitkin, 1981 <doi:10.1007/BF02293801>).
Within parameter estimation algorithm, several methods for latent distribution estimation are available.
Reflecting some features of the true latent distribution, these latent distribution estimation methods can possibly enhance the estimation accuracy and free the normality assumption on the latent distribution.
Author: Seewoo Li [aut, cre, cph]
Maintainer: Seewoo Li <seewooli@g.ucla.edu>
Diff between IRTest versions 2.1.0 dated 2024-10-04 and 2.2.0 dated 2026-03-17
DESCRIPTION | 14 - MD5 | 46 +-- NAMESPACE | 2 NEWS.md | 4 R/DataGeneration.R | 6 R/IRTest_Cont.R | 106 ++++++-- R/IRTest_Poly.R | 113 ++++++-- R/coef.IRTest.R | 11 R/dist2.R | 16 - R/factor_score.R | 101 ++----- R/information.R | 27 ++ R/non_exporting_functions.R | 313 ++++++++++++++++++++++-- R/plot_item.R | 98 ++++++- R/summary.irtest.R | 26 +- R/sysdata.rda |binary README.md | 40 +-- build/vignette.rds |binary inst/doc/vignette_for_IRTest.R | 54 ++-- inst/doc/vignette_for_IRTest.html | 438 +++++++++++++++++----------------- man/IRTest_Cont.Rd | 44 ++- man/IRTest_Poly.Rd | 8 man/adaptive_test.Rd | 97 ++----- man/dist2.Rd | 10 tests/testthat/test-summary_n_print.R | 16 - 24 files changed, 1019 insertions(+), 571 deletions(-)
Title: A Unified Data Layer for Large-Scale Single-Cell, Spatial and
Bulk Immunomics
Description: Provides a unified data layer for single-cell, spatial and bulk
T-cell and B-cell immune receptor repertoire data. Think AnnData or SeuratObject,
but for AIRR data, a.k.a. Adaptive Immune Receptor Repertoire, VDJ-seq, RepSeq, or
VDJ sequencing data.
Author: Vadim I. Nazarov [aut, cre]
Maintainer: Vadim I. Nazarov <support@immunomind.com>
Diff between immundata versions 0.0.5 dated 2025-10-09 and 0.0.6 dated 2026-03-17
immundata-0.0.5/immundata/R/import-standalone-purrr.R |only immundata-0.0.5/immundata/R/operations_agg.R |only immundata-0.0.5/immundata/tests/testthat/test-io-immundata-read.R |only immundata-0.0.5/immundata/tests/testthat/test-io-immundata-write.R |only immundata-0.0.5/immundata/tests/testthat/test-io-repertoires.R |only immundata-0.0.6/immundata/DESCRIPTION | 16 - immundata-0.0.6/immundata/MD5 | 94 +++++--- immundata-0.0.6/immundata/NAMESPACE | 15 + immundata-0.0.6/immundata/R/core_immundata.R | 75 +++++- immundata-0.0.6/immundata/R/globals.R | 14 - immundata-0.0.6/immundata/R/immundata-package.R | 6 immundata-0.0.6/immundata/R/io_immundata_read.R | 64 ++++- immundata-0.0.6/immundata/R/io_immundata_read_utils.R |only immundata-0.0.6/immundata/R/io_immundata_write.R | 103 +++++---- immundata-0.0.6/immundata/R/io_immundata_write_internal.R |only immundata-0.0.6/immundata/R/io_immundata_write_utils.R |only immundata-0.0.6/immundata/R/io_repertoires_processing.R | 32 +- immundata-0.0.6/immundata/R/io_repertoires_read.R | 89 ++++++-- immundata-0.0.6/immundata/R/operations_agg_receptors.R |only immundata-0.0.6/immundata/R/operations_agg_repertoires.R |only immundata-0.0.6/immundata/R/operations_agg_strata.R |only immundata-0.0.6/immundata/R/operations_annotate.R | 3 immundata-0.0.6/immundata/R/operations_compute_collect.R |only immundata-0.0.6/immundata/R/operations_concat.R |only immundata-0.0.6/immundata/R/operations_dimnames.R |only immundata-0.0.6/immundata/R/operations_downsample.R |only immundata-0.0.6/immundata/R/operations_external_annotate_anndatar.R |only immundata-0.0.6/immundata/R/operations_filter.R | 9 immundata-0.0.6/immundata/R/operations_mutate.R | 3 immundata-0.0.6/immundata/R/operations_utils.R | 111 ++++++++++ immundata-0.0.6/immundata/R/operations_utils_levenshtein.R | 8 immundata-0.0.6/immundata/README.md | 21 + immundata-0.0.6/immundata/inst/extdata/ig |only immundata-0.0.6/immundata/inst/extdata/tsv/immundata-sample_0_1k/annotations.parquet |binary immundata-0.0.6/immundata/inst/extdata/tsv/immundata-sample_0_1k/metadata.json | 93 ++++++++ immundata-0.0.6/immundata/man/ImmunData.Rd | 6 immundata-0.0.6/immundata/man/agg_receptors.Rd | 16 - immundata-0.0.6/immundata/man/agg_repertoires.Rd | 2 immundata-0.0.6/immundata/man/agg_strata.Rd |only immundata-0.0.6/immundata/man/annotate_anndata.Rd |only immundata-0.0.6/immundata/man/collect.ImmunData.Rd |only immundata-0.0.6/immundata/man/compute.ImmunData.Rd |only immundata-0.0.6/immundata/man/dimnames-set-.ImmunData.Rd |only immundata-0.0.6/immundata/man/dimnames.ImmunData.Rd |only immundata-0.0.6/immundata/man/downsample_immundata.Rd |only immundata-0.0.6/immundata/man/make_receptor_schema.Rd | 2 immundata-0.0.6/immundata/man/names-set-.ImmunData.Rd |only immundata-0.0.6/immundata/man/preprocess_postprocess.Rd | 2 immundata-0.0.6/immundata/man/read_immundata.Rd | 20 + immundata-0.0.6/immundata/man/read_repertoires.Rd | 7 immundata-0.0.6/immundata/man/rename_strata.Rd |only immundata-0.0.6/immundata/man/write_immundata.Rd | 73 +++++- immundata-0.0.6/immundata/tests/testthat.R | 1 immundata-0.0.6/immundata/tests/testthat/helper-io.R |only immundata-0.0.6/immundata/tests/testthat/test-agg-strata.R |only immundata-0.0.6/immundata/tests/testthat/test-annotate-external.R |only immundata-0.0.6/immundata/tests/testthat/test-compute-collect-immundata.R |only immundata-0.0.6/immundata/tests/testthat/test-downsample.R |only immundata-0.0.6/immundata/tests/testthat/test-io-immundata.R |only immundata-0.0.6/immundata/tests/testthat/test-io-repertoires-agg-stepwise.R |only immundata-0.0.6/immundata/tests/testthat/test-io-repertoires-agg.R |only immundata-0.0.6/immundata/tests/testthat/test-io-repertoires-counts.R |only immundata-0.0.6/immundata/tests/testthat/test-io-repertoires-files.R |only immundata-0.0.6/immundata/tests/testthat/test-io-repertoires-processing.R |only immundata-0.0.6/immundata/tests/testthat/test-io-repertoires-schema-bulk.R |only immundata-0.0.6/immundata/tests/testthat/test-io-repertoires-schema-paired.R |only immundata-0.0.6/immundata/tests/testthat/test-io-repertoires-schema-single.R |only immundata-0.0.6/immundata/tests/testthat/test-io-repertoires-schema-table.R |only immundata-0.0.6/immundata/tests/testthat/test-io-repertoires-schema.R |only 69 files changed, 683 insertions(+), 202 deletions(-)
Title: Interactive Dendrograms
Description: Interactive dendrogram that enables the user to select and
color clusters, to zoom and pan the dendrogram, and to visualize
the clustered data not only in a built-in heat map, but also in
'GGobi' interactive plots and user-supplied plots.
This is a backport of Qt-based 'idendro'
(<https://github.com/tsieger/idendro>) to base R graphics and
Tcl/Tk GUI.
Author: Tomas Sieger [aut, cre]
Maintainer: Tomas Sieger <tomas.sieger@seznam.cz>
Diff between idendr0 versions 1.5.3 dated 2017-02-22 and 1.5.4 dated 2026-03-17
DESCRIPTION | 19 ++++++++++++------- MD5 | 21 +++++++++++++-------- NEWS | 5 +++++ R/computeLeafColorIdxs.R | 2 +- R/idendro.R | 33 ++++++++++++++++++++------------- README.md | 30 +++++++++++++++++++++++------- demo/00Index | 1 + demo/idendroWithLoon.R |only inst/doc/idendro.pdf |binary man/figures |only man/idendr0-package.Rd | 2 +- 11 files changed, 76 insertions(+), 37 deletions(-)
Title: Download and Tidy 'HMRC' Statistical Data
Description: Provides functions to download, parse, and tidy statistical
data published by 'HM Revenue and Customs' ('HMRC') on 'GOV.UK'. Covers
monthly tax receipts (41 tax heads from 2016), VAT (from 1973), fuel
duties (from 1990), tobacco duties (from 1991), annual Corporation Tax
receipts, stamp duty, research and development tax credit statistics
(from 2000), tax gap estimates, Income Tax liabilities by income
range, and monthly property transaction counts. File URLs are resolved at runtime via the 'GOV.UK' Content API
<https://www.gov.uk/api/content>, so data is always current without
hardcoded URLs. Files are cached locally between sessions.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between hmrc versions 0.3.0 dated 2026-03-12 and 0.3.2 dated 2026-03-17
DESCRIPTION | 12 ++--- MD5 | 67 ++++++++++++++--------------- NEWS.md | 10 ++++ R/clear_cache.R | 5 +- R/data.R | 2 R/get_corporation_tax.R | 3 + R/get_fuel_duties.R | 3 + R/get_income_tax_stats.R | 3 + R/get_property_transactions.R | 3 + R/get_rd_credits.R | 3 + R/get_stamp_duty.R | 3 + R/get_tax_gap.R | 3 + R/get_tax_receipts.R | 3 + R/get_tobacco_duties.R | 3 + R/get_vat.R | 3 + R/hmrc-package.R | 22 ++++++++- R/list_tax_heads.R | 1 R/utils-govuk-api.R | 14 +++++- README.md | 75 ++++++++++++++++++--------------- inst/CITATION |only man/clear_cache.Rd | 8 +++ man/get_corporation_tax.Rd | 7 +++ man/get_fuel_duties.Rd | 7 +++ man/get_income_tax_stats.Rd | 8 +++ man/get_property_transactions.Rd | 7 +++ man/get_rd_credits.Rd | 7 +++ man/get_stamp_duty.Rd | 7 +++ man/get_tax_gap.Rd | 8 +++ man/get_tax_receipts.Rd | 8 +++ man/get_tobacco_duties.Rd | 7 +++ man/get_vat.Rd | 8 +++ man/hmrc-package.Rd | 22 ++++++++- man/list_tax_heads.Rd | 6 ++ man/tax_heads.Rd | 2 tests/testthat/test-get_tax_receipts.R | 2 35 files changed, 270 insertions(+), 82 deletions(-)
Title: Standardized Git Repository Data
Description: Obtain standardized data from multiple 'Git' services, including 'GitHub' and 'GitLab'.
Designed to be 'Git' service-agnostic, this package assists teams with activities spread across various
'Git' platforms by providing a unified way to access repository data.
Author: Maciej Banas [aut, cre],
Kamil Koziej [aut],
Karolina Marcinkowska [aut],
Matt Secrest [aut]
Maintainer: Maciej Banas <banasmaciek@gmail.com>
Diff between GitStats versions 2.3.9 dated 2026-01-11 and 2.4.0 dated 2026-03-17
GitStats-2.3.9/GitStats/R/utils-pipe.R |only GitStats-2.3.9/GitStats/man/pipe.Rd |only GitStats-2.3.9/GitStats/tests/testthat/helper-fixtures.R |only GitStats-2.4.0/GitStats/DESCRIPTION | 12 GitStats-2.4.0/GitStats/LICENSE | 4 GitStats-2.4.0/GitStats/MD5 | 303 GitStats-2.4.0/GitStats/NAMESPACE | 103 GitStats-2.4.0/GitStats/NEWS.md | 622 +- GitStats-2.4.0/GitStats/R/Engine.R | 33 GitStats-2.4.0/GitStats/R/EngineGraphQL.R | 445 - GitStats-2.4.0/GitStats/R/EngineGraphQLGitHub.R | 1502 ++-- GitStats-2.4.0/GitStats/R/EngineGraphQLGitLab.R | 1542 ++--- GitStats-2.4.0/GitStats/R/EngineRest.R | 210 GitStats-2.4.0/GitStats/R/EngineRestGitHub.R | 610 - GitStats-2.4.0/GitStats/R/EngineRestGitLab.R | 1342 ++-- GitStats-2.4.0/GitStats/R/GQLQueryGitHub.R | 655 +- GitStats-2.4.0/GitStats/R/GQLQueryGitLab.R | 661 +- GitStats-2.4.0/GitStats/R/GitHost.R | 3053 +++++----- GitStats-2.4.0/GitStats/R/GitHostGitHub.R | 840 +- GitStats-2.4.0/GitStats/R/GitHostGitLab.R | 1024 +-- GitStats-2.4.0/GitStats/R/GitStats-package.R | 21 GitStats-2.4.0/GitStats/R/GitStats.R | 2176 +++---- GitStats-2.4.0/GitStats/R/get_commits.R | 236 GitStats-2.4.0/GitStats/R/get_files.R | 204 GitStats-2.4.0/GitStats/R/get_issues.R | 244 GitStats-2.4.0/GitStats/R/get_orgs.R | 74 GitStats-2.4.0/GitStats/R/get_pull_requests.R |only GitStats-2.4.0/GitStats/R/get_release_logs.R | 74 GitStats-2.4.0/GitStats/R/get_repos.R | 401 - GitStats-2.4.0/GitStats/R/get_users.R | 77 GitStats-2.4.0/GitStats/R/gitstats_functions.R | 186 GitStats-2.4.0/GitStats/R/global.R | 38 GitStats-2.4.0/GitStats/R/message_handler.R | 75 GitStats-2.4.0/GitStats/R/set_host.R | 168 GitStats-2.4.0/GitStats/R/test_helpers.R | 500 - GitStats-2.4.0/GitStats/R/utils.R | 166 GitStats-2.4.0/GitStats/README.md | 400 - GitStats-2.4.0/GitStats/build/vignette.rds |binary GitStats-2.4.0/GitStats/inst/WORDLIST | 80 GitStats-2.4.0/GitStats/inst/doc/get_repos_with_code.R | 74 GitStats-2.4.0/GitStats/inst/doc/get_repos_with_code.Rmd | 110 GitStats-2.4.0/GitStats/inst/doc/get_repos_with_code.html | 780 +- GitStats-2.4.0/GitStats/inst/doc/set_hosts.R | 118 GitStats-2.4.0/GitStats/inst/doc/set_hosts.Rmd | 298 GitStats-2.4.0/GitStats/inst/doc/set_hosts.html | 1002 +-- GitStats-2.4.0/GitStats/man/create_gitstats.Rd | 34 GitStats-2.4.0/GitStats/man/get_commits.Rd | 104 GitStats-2.4.0/GitStats/man/get_commits_stats.Rd | 94 GitStats-2.4.0/GitStats/man/get_files.Rd | 204 GitStats-2.4.0/GitStats/man/get_issues.Rd | 112 GitStats-2.4.0/GitStats/man/get_issues_stats.Rd | 94 GitStats-2.4.0/GitStats/man/get_orgs.Rd | 76 GitStats-2.4.0/GitStats/man/get_pull_requests.Rd |only GitStats-2.4.0/GitStats/man/get_pull_requests_stats.Rd |only GitStats-2.4.0/GitStats/man/get_release_logs.Rd | 94 GitStats-2.4.0/GitStats/man/get_repos.Rd | 158 GitStats-2.4.0/GitStats/man/get_repos_trees.Rd | 116 GitStats-2.4.0/GitStats/man/get_repos_urls.Rd | 130 GitStats-2.4.0/GitStats/man/get_storage.Rd | 78 GitStats-2.4.0/GitStats/man/get_users.Rd | 78 GitStats-2.4.0/GitStats/man/is_verbose.Rd | 28 GitStats-2.4.0/GitStats/man/set_github_host.Rd | 116 GitStats-2.4.0/GitStats/man/set_gitlab_host.Rd | 118 GitStats-2.4.0/GitStats/man/show_hosts.Rd | 34 GitStats-2.4.0/GitStats/man/show_orgs.Rd | 38 GitStats-2.4.0/GitStats/man/verbose_off.Rd | 34 GitStats-2.4.0/GitStats/man/verbose_on.Rd | 34 GitStats-2.4.0/GitStats/tests/spelling.R | 6 GitStats-2.4.0/GitStats/tests/testthat.R | 24 GitStats-2.4.0/GitStats/tests/testthat/_snaps/00-get_orgs-GitHub.md | 52 GitStats-2.4.0/GitStats/tests/testthat/_snaps/00-get_orgs-GitLab.md | 214 GitStats-2.4.0/GitStats/tests/testthat/_snaps/00-get_orgs-GitStats.md | 30 GitStats-2.4.0/GitStats/tests/testthat/_snaps/01-get_repos-GitHub.md | 162 GitStats-2.4.0/GitStats/tests/testthat/_snaps/01-get_repos-GitLab.md | 186 GitStats-2.4.0/GitStats/tests/testthat/_snaps/01-get_repos-GitStats.md | 32 GitStats-2.4.0/GitStats/tests/testthat/_snaps/02-get_commits-GitHub.md | 30 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GitStats-2.4.0/GitStats/tests/testthat/helper-fixtures-users.R |only GitStats-2.4.0/GitStats/tests/testthat/helper.R | 124 GitStats-2.4.0/GitStats/tests/testthat/setup.R | 122 GitStats-2.4.0/GitStats/tests/testthat/test-00-api-requests.R | 240 GitStats-2.4.0/GitStats/tests/testthat/test-00-get_orgs-GitHub.R | 338 - GitStats-2.4.0/GitStats/tests/testthat/test-00-get_orgs-GitLab.R | 970 +-- GitStats-2.4.0/GitStats/tests/testthat/test-00-get_orgs-GitStats.R | 148 GitStats-2.4.0/GitStats/tests/testthat/test-00-graphql_errors.R | 58 GitStats-2.4.0/GitStats/tests/testthat/test-01-get_repos-GitHub.R | 1583 ++--- GitStats-2.4.0/GitStats/tests/testthat/test-01-get_repos-GitLab.R | 1376 ++-- GitStats-2.4.0/GitStats/tests/testthat/test-01-get_repos-GitStats.R | 364 - GitStats-2.4.0/GitStats/tests/testthat/test-02-get_commits-GitHub.R | 497 - GitStats-2.4.0/GitStats/tests/testthat/test-02-get_commits-GitLab.R | 408 - GitStats-2.4.0/GitStats/tests/testthat/test-02-get_commits-GitStats.R | 272 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GitStats-2.4.0/GitStats/tests/testthat/test-get_user-GitLab.R | 94 GitStats-2.4.0/GitStats/tests/testthat/test-get_users-GitStats.R | 135 GitStats-2.4.0/GitStats/tests/testthat/test-helpers.R | 442 - GitStats-2.4.0/GitStats/tests/testthat/test-set_host.R | 396 - GitStats-2.4.0/GitStats/tests/testthat/test-show.R | 48 GitStats-2.4.0/GitStats/tests/testthat/test-utils.R | 86 GitStats-2.4.0/GitStats/tests/testthat/test-z-GitStats.R | 290 GitStats-2.4.0/GitStats/vignettes/get_repos_with_code.Rmd | 110 GitStats-2.4.0/GitStats/vignettes/set_hosts.Rmd | 298 164 files changed, 20729 insertions(+), 20202 deletions(-)
Title: Automatically Position Non-Overlapping Text Labels with
'ggplot2'
Description: Provides text and label geoms for 'ggplot2' that help to avoid
overlapping text labels. Labels repel away from each other and away from the
data points.
Author: Kamil Slowikowski [aut, cre] ,
Teun van den Brand [ctb] ,
Alicia Schep [ctb] ,
Sean Hughes [ctb] ,
Trung Kien Dang [ctb] ,
Saulius Lukauskas [ctb],
Jean-Olivier Irisson [ctb] ,
Zhian N Kamvar [ctb] ,
Thompson Ryan [ctb] ,
Dervieux Christophe [ctb] ,
[...truncated...]
Maintainer: Kamil Slowikowski <kslowikowski@gmail.com>
Diff between ggrepel versions 0.9.7 dated 2026-02-25 and 0.9.8 dated 2026-03-17
ggrepel-0.9.7/ggrepel/vignettes/examples.html |only ggrepel-0.9.8/ggrepel/DESCRIPTION | 8 ++++---- ggrepel-0.9.8/ggrepel/MD5 | 7 +++---- ggrepel-0.9.8/ggrepel/NEWS.md | 12 ++++++++++-- ggrepel-0.9.8/ggrepel/inst/doc/ggrepel.html | 4 ++-- 5 files changed, 19 insertions(+), 12 deletions(-)
Title: Project Scaffolding for R and 'Quarto'
Description: Creates structured R and 'Quarto' projects with a consistent directory layout: scripts in R/, analysis documents in analysis/, and web assets in www/. The primary entry point, init(), downloads the latest template from a companion 'GitHub' repository so that project structure evolves independently of package releases. Supports persistent author metadata and 'Quarto' brand configuration that carry across projects automatically.
Author: Kyle Grealis [aut, cre]
Maintainer: Kyle Grealis <kyleGrealis@proton.me>
Diff between froggeR versions 1.0.0 dated 2026-02-09 and 1.0.1 dated 2026-03-17
DESCRIPTION | 10 +-- MD5 | 39 +++++++------ NEWS.md | 24 ++++++++ R/init.R | 15 ++++- R/save_brand.R | 10 ++- R/save_variables.R | 10 ++- R/utils.R | 10 ++- R/write_quarto.R | 25 +++++--- README.md | 96 +++++++++++++--------------------- build/vignette.rds |binary inst/CITATION |only inst/doc/every-file-in-its-place.Rmd | 30 ++++------ inst/doc/every-file-in-its-place.html | 72 +++++++++++++------------ inst/doc/from-zero-to-project.Rmd | 20 ++++--- inst/doc/from-zero-to-project.html | 42 +++++++++----- man/write_quarto.Rd | 4 - tests/testthat/helper-templates.R | 2 tests/testthat/test-init.R | 2 tests/testthat/test-write_quarto.R | 18 +++--- vignettes/every-file-in-its-place.Rmd | 30 ++++------ vignettes/from-zero-to-project.Rmd | 20 ++++--- 21 files changed, 269 insertions(+), 210 deletions(-)
Title: Extinction Risk Estimation
Description: Estimates extinction risk from population time series under a
drifted Wiener process using MLE and
observation-error-and-autocovariance-robust estimators, with
confidence intervals based on the w-z method.
Author: Hiroshi Hakoyama [aut, cre, cph]
Maintainer: Hiroshi Hakoyama <hiroshi.hakoyama@gmail.com>
Diff between extr versions 1.0.0 dated 2025-09-21 and 1.1.0 dated 2026-03-17
DESCRIPTION | 13 +-- LICENSE | 2 MD5 | 30 +++--- NEWS.md | 36 ++++---- R/ext_di.R | 181 ++++++++++++++++++++++++++---------------- R/extinction_probability_di.R | 2 R/oear.R |only R/print.ext_di.R | 97 ++++++++++++++-------- README.md | 112 ++++++++++++++----------- inst/CITATION | 11 +- inst/WORDLIST | 9 ++ man/ext_di.Rd | 123 ++++++++++++++++++---------- man/extr-package.Rd | 2 man/oear_sigma2_hac.Rd |only man/print.ext_di.Rd | 8 - tests/test_extr_core.R | 56 ++++++++++++ tests/test_extr_print.R | 26 +++++- 17 files changed, 467 insertions(+), 241 deletions(-)
Title: Empirical Discovery of Differential Equations from Time Series
Data
Description: A comprehensive toolkit for discovering differential and difference
equations from empirical time series data using symbolic regression. The package
implements a complete workflow from data preprocessing (including Total Variation
Regularized differentiation for noisy economic data), visual exploration of
dynamical structure, and symbolic equation discovery via genetic algorithms.
It leverages a high-performance 'Julia' backend ('SymbolicRegression.jl') to provide
industrial-grade robustness, physics-informed constraints, and rigorous
out-of-sample validation. Designed for economists, physicists, and researchers
studying dynamical systems from observational data.
Author: Jose Mauricio Gomez Julian [aut, cre]
Maintainer: Jose Mauricio Gomez Julian <isadore.nabi@pm.me>
Diff between EmpiricalDynamics versions 0.1.2 dated 2026-01-16 and 0.1.3 dated 2026-03-17
DESCRIPTION | 12 - MD5 | 17 +- NAMESPACE | 1 R/preprocessing.R | 273 ++++++++++++++++++++++++++++++------------ R/residual_analysis.R | 164 ++++++++++++++++++++++++- inst/doc/getting-started.html | 6 man/compute_derivative_tvr.Rd | 31 ++++ man/estimate_diffusion_qv.Rd |only man/estimate_sde_iterative.Rd | 17 ++ man/select_lambda_cv_tvr.Rd | 8 - 10 files changed, 426 insertions(+), 103 deletions(-)
More information about EmpiricalDynamics at CRAN
Permanent link
Title: Vectorised Probability Distributions
Description: Vectorised distribution objects with tools for manipulating,
visualising, and using probability distributions. Designed to allow model
prediction outputs to return distributions rather than their parameters,
allowing users to directly interact with predictive distributions in a
data-oriented workflow. In addition to providing generic replacements for
p/d/q/r functions, other useful statistics can be computed including means,
variances, intervals, and highest density regions.
Author: Mitchell O'Hara-Wild [aut, cre] ,
Matthew Kay [aut] ,
Alex Hayes [aut] ,
Rob Hyndman [aut] ,
Earo Wang [ctb] ,
Vencislav Popov [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between distributional versions 0.6.0 dated 2026-01-14 and 0.7.0 dated 2026-03-17
DESCRIPTION | 8 ++++---- MD5 | 22 ++++++++++++++-------- NAMESPACE | 15 +++++++++++++++ NEWS.md | 14 ++++++++++++++ R/dist_dirichlet.R |only R/dist_horseshoe.R |only R/dist_multivariate_normal.R | 2 +- R/support.R | 22 ++++++++++------------ README.md | 2 +- man/dist_dirichlet.Rd |only man/dist_horseshoe.Rd |only man/dist_multivariate_normal.Rd | 2 +- man/figures/README-plot-1.png |binary tests/testthat/test-dist-dirichlet.R |only tests/testthat/test-dist-horseshoe.R |only 15 files changed, 60 insertions(+), 27 deletions(-)
More information about distributional at CRAN
Permanent link
Title: Auxiliary Data Package for Our Main Package 'dartR'
Description: Data package for 'dartR'. Provides data sets to run examples in 'dartR'.
This was necessary due to the size limit imposed by 'CRAN'. The data in 'dartR.data'
is needed to run the examples provided in the 'dartR' functions.
All available data sets are either based on actual data (but reduced in size)
and/or simulated data sets to allow the fast execution of examples and demonstration
of the functions.
Author: Bernd Gruber [aut, cre],
Arthur Georges [aut],
Jose L. Mijangos [aut],
Carlo Pacioni [aut],
Oliver Berry [ctb]
Maintainer: Bernd Gruber <bernd.gruber@canberra.edu.au>
Diff between dartR.data versions 1.0.8 dated 2024-05-29 and 1.2.2 dated 2026-03-17
DESCRIPTION | 15 ++++++++------- MD5 | 32 ++++++++++++++++---------------- R/datasets.r | 7 +++---- R/zzz.R | 2 ++ build/partial.rdb |binary data/EYR.rda |binary data/LBP.rda |binary data/YTH.rda |binary data/bandicoot.gl.rda |binary data/platypus.gl.rda |binary data/possums.gl.rda |binary data/testset.gl.rda |binary data/testset.gs.rda |binary inst/extdata/sim_variables.csv | 13 +++++++------ man/bandicoot.gl.Rd | 2 +- man/possums.gl.Rd | 2 +- man/zzz.Rd | 36 ++++++++++++++++++------------------ 17 files changed, 56 insertions(+), 53 deletions(-)
Title: Analysing 'SNP' Data to Support Captive Breeding
Description: Functions are provided that facilitate the analysis of SNP
(single nucleotide polymorphism) data to answer questions regarding
captive breeding and relatedness between individuals. 'dartR.captive'
is part of the 'dartRverse' suit of packages.
Gruber et al. (2018) <doi:10.1111/1755-0998.12745>.
Mijangos et al. (2022) <doi:10.1111/2041-210X.13918>.
Author: Bernd Gruber [aut, cre],
Arthur Georges [aut],
Jose L. Mijangos [aut],
Carlo Pacioni [aut],
Peter J. Unmack [ctb],
Oliver Berry [ctb],
Lindsay V. Clark [ctb],
Floriaan Devloo-Delva [ctb],
Eric Archer [ctb],
Sam Amini [ctb],
Ethan Halford [ctb]
Maintainer: Bernd Gruber <bernd.gruber@canberra.edu.au>
Diff between dartR.captive versions 1.0.2 dated 2025-02-18 and 1.2.2 dated 2026-03-17
DESCRIPTION | 31 - MD5 | 81 +-- NAMESPACE | 16 R/gl.assign.grm.r | 1 R/gl.assign.mahal.r |only R/gl.assign.mahalanobis.r | 718 ++++++++++++++++++---------- R/gl.assign.on.genotype.r |only R/gl.assign.pa.r | 510 ++++++++----------- R/gl.assign.pca.r | 300 ++++++++--- R/gl.diagnostics.relatedness.r |only R/gl.filter.parent.offspring.r | 42 - R/gl.grm.network.r | 441 +++++++++-------- R/gl.grm.r | 14 R/gl.plot.network.r | 1 R/gl.report.parent.offspring.r | 13 R/gl.run.EMIBD9.R | 273 +++++----- R/gl.run.colony.r |only R/gl.sim.relatedness.R | 123 +++- R/gl2colony.r | 678 +++++++++++++++----------- R/utils.assignment.r | 1 R/utils.assignment_2.r | 1 R/utils.assignment_3.r | 1 R/utils.assignment_4.r | 1 R/utils.classes.diagnostics.relatedness.r |only R/utils.functions.diagnostics.relatedness.r |only R/zzz.r | 27 - man/gl.assign.grm.Rd | 1 man/gl.assign.mahal.Rd |only man/gl.assign.mahalanobis.Rd | 84 +-- man/gl.assign.on.genotype.Rd |only man/gl.assign.pa.Rd | 55 +- man/gl.assign.pca.Rd | 80 +-- man/gl.diagnostics.relatedness.Rd |only man/gl.filter.parent.offspring.Rd | 6 man/gl.grm.Rd | 14 man/gl.grm.network.Rd | 148 ++--- man/gl.plot.network.Rd | 1 man/gl.report.parent.offspring.Rd | 6 man/gl.run.EMIBD9.Rd | 94 ++- man/gl.run.colony.Rd |only man/gl.sim.relatedness.Rd | 73 +- man/gl2colony.Rd |only man/utils.assignment.Rd | 1 man/utils.assignment_2.Rd | 1 man/utils.assignment_3.Rd | 1 man/utils.assignment_4.Rd | 1 man/zzz.Rd | 2 47 files changed, 2243 insertions(+), 1598 deletions(-)
Title: Assessing Skill of Climate Forecasts on Seasonal-to-Decadal
Timescales
Description: Exploits dynamical seasonal forecasts in order to provide
information relevant to stakeholders at the seasonal timescale. The package
contains process-based methods for forecast calibration, bias correction,
statistical and stochastic downscaling, optimal forecast combination and
multivariate verification, as well as basic and advanced tools to obtain
tailored products. This package was developed in the context of the ERA4CS
project MEDSCOPE and the H2020 S2S4E project and includes contributions from
ArticXchange project founded by EU-PolarNet 2. Implements methods described in
Pérez-Zanón et al. (2022) <doi:10.5194/gmd-15-6115-2022>,
Doblas-Reyes et al. (2005) <doi:10.1111/j.1600-0870.2005.00104.x>,
Mishra et al. (2018) <doi:10.1007/s00382-018-4404-z>,
Sanchez-Garcia et al. (2019) <doi:10.5194/asr-16-165-2019>,
Straus et al. (2007) <doi:10.1175/JCLI4070.1>,
Terzago et al. (2018) <doi:10.5194/nhess-18-2825-2018>,
Torralba et al. (2017) <doi:10.117 [...truncated...]
Author: Nuria Perez-Zanon [aut] ,
Louis-Philippe Caron [aut] ,
Carmen Alvarez-Castro [aut] ,
Lauriane Batte [aut],
Carlos Delgado [aut],
Jost von Hardenberg [aut] ,
Llorenc LLedo [aut],
Nicolau Manubens [aut],
Lluis Palma [aut],
Eroteida Sanchez-Garcia [aut] [...truncated...]
Maintainer: Victoria Agudetse <victoria.agudetse@bsc.es>
Diff between CSTools versions 5.3.0 dated 2025-11-14 and 5.3.1 dated 2026-03-17
DESCRIPTION | 16 +- MD5 | 48 +++---- NAMESPACE | 1 NEWS.md | 10 + R/CST_BindDim.R | 146 ++++++++++++++++++--- R/CST_RFWeights.R | 2 R/CST_ReorderDims.R |only build/partial.rdb |binary build/vignette.rds |binary data/lonlat_prec.rda |binary data/lonlat_prec_st.rda |binary data/lonlat_temp.rda |binary data/lonlat_temp_st.rda |binary inst/doc/Analogs_vignette.html | 199 ++++++++++++----------------- inst/doc/BestEstimateIndex_vignette.html | 134 ++++++++++++------- inst/doc/Data_Considerations.html | 202 ++++++++++++------------------ inst/doc/ENSclustering_vignette.html | 206 +++++++++++++----------------- inst/doc/MostLikelyTercile_vignette.html | 202 ++++++++++++------------------ inst/doc/MultiModelSkill_vignette.html | 198 ++++++++++++----------------- inst/doc/MultivarRMSE_vignette.html | 194 ++++++++++++---------------- inst/doc/PlotForecastPDF.html | 200 ++++++++++++----------------- inst/doc/RainFARM_vignette.R | 182 +++++++++++++-------------- inst/doc/RainFARM_vignette.html | 199 ++++++++++++----------------- inst/doc/WeatherRegimes_vignette.html | 208 +++++++++++++------------------ man/CST_BindDim.Rd | 6 man/CST_ReorderDims.Rd |only 26 files changed, 1121 insertions(+), 1232 deletions(-)
Title: Clinical Trial Example Datasets
Description: A collection of clinical trial example datasets from
multiple sources including the CDISC Pilot 01 study
(CDISC <https://www.cdisc.org/>). All datasets are provided in Parquet
format for efficient storage and can be accessed using the 'connector'
package. Designed for training, testing, prototyping, and demonstrating
clinical data analysis workflows.
Author: Lovemore Gakava [aut, cre, cph]
Maintainer: Lovemore Gakava <Lovemore.Gakava@gmail.com>
This is a re-admission after prior archival of version 0.1.0 dated 2026-03-03
Diff between clinTrialData versions 0.1.0 dated 2026-03-03 and 0.1.3 dated 2026-03-17
clinTrialData-0.1.0/clinTrialData/inst/exampledata/cdisc_pilot/adam/adlb.parquet |only clinTrialData-0.1.0/clinTrialData/man/dot-set_permissions.Rd |only clinTrialData-0.1.3/clinTrialData/DESCRIPTION | 7 clinTrialData-0.1.3/clinTrialData/MD5 | 78 clinTrialData-0.1.3/clinTrialData/NAMESPACE | 26 clinTrialData-0.1.3/clinTrialData/R/connections.R | 20 clinTrialData-0.1.3/clinTrialData/R/connector_locked.R | 148 - clinTrialData-0.1.3/clinTrialData/R/data.R | 1 clinTrialData-0.1.3/clinTrialData/R/download.R | 14 clinTrialData-0.1.3/clinTrialData/R/lock.R | 360 +-- clinTrialData-0.1.3/clinTrialData/README.md | 401 +-- clinTrialData-0.1.3/clinTrialData/build/vignette.rds |binary clinTrialData-0.1.3/clinTrialData/inst/WORDLIST | 13 clinTrialData-0.1.3/clinTrialData/inst/doc/getting-started.R | 127 - clinTrialData-0.1.3/clinTrialData/inst/doc/getting-started.Rmd | 13 clinTrialData-0.1.3/clinTrialData/inst/doc/getting-started.html | 1200 +++++----- clinTrialData-0.1.3/clinTrialData/inst/exampledata/cdisc_pilot/metadata.json | 1 clinTrialData-0.1.3/clinTrialData/man/cache_dir.Rd | 44 clinTrialData-0.1.3/clinTrialData/man/can_write_study.Rd | 40 clinTrialData-0.1.3/clinTrialData/man/clinTrialData-data.Rd | 163 - clinTrialData-0.1.3/clinTrialData/man/connect_clinical_data.Rd | 74 clinTrialData-0.1.3/clinTrialData/man/connect_to_source.Rd | 52 clinTrialData-0.1.3/clinTrialData/man/dataset_info.Rd | 68 clinTrialData-0.1.3/clinTrialData/man/dot-onLoad.Rd | 38 clinTrialData-0.1.3/clinTrialData/man/download_study.Rd | 92 clinTrialData-0.1.3/clinTrialData/man/generate_connector_config.Rd | 38 clinTrialData-0.1.3/clinTrialData/man/get_lock_status.Rd | 36 clinTrialData-0.1.3/clinTrialData/man/is_study_locked.Rd | 38 clinTrialData-0.1.3/clinTrialData/man/list_available_studies.Rd | 80 clinTrialData-0.1.3/clinTrialData/man/list_data_sources.Rd | 64 clinTrialData-0.1.3/clinTrialData/man/lock_all_studies.Rd | 40 clinTrialData-0.1.3/clinTrialData/man/lock_study.Rd | 43 clinTrialData-0.1.3/clinTrialData/man/remove_cnt.ConnectorLockedFS.Rd | 44 clinTrialData-0.1.3/clinTrialData/man/unlock_study.Rd | 39 clinTrialData-0.1.3/clinTrialData/man/wrap_connectors_with_locks.Rd | 40 clinTrialData-0.1.3/clinTrialData/man/write_cnt.ConnectorLockedFS.Rd | 52 clinTrialData-0.1.3/clinTrialData/tests/testthat.R | 24 clinTrialData-0.1.3/clinTrialData/tests/testthat/test-connections.R | 110 clinTrialData-0.1.3/clinTrialData/tests/testthat/test-download.R | 2 clinTrialData-0.1.3/clinTrialData/tests/testthat/test-lock.R | 641 ++--- clinTrialData-0.1.3/clinTrialData/vignettes/getting-started.Rmd | 13 41 files changed, 2068 insertions(+), 2216 deletions(-)
Title: Generic Implementation of a PK/PD Model
Description: A generic, easy-to-use and expandable implementation of a
pharmacokinetic (PK) / pharmacodynamic (PD) model based on the S4
class system. This package allows the user to read and write
pharmacometric models from and to files, including a JSON-based
interface to import Campsis models defined using a formal JSON schema
distributed with the package. Models can be adapted further on the fly
in the R environment using an intuitive API to add, modify or delete
equations, ordinary differential equations (ODEs), model parameters or
compartment properties (such as infusion duration or rate,
bioavailability and initial values). The package also provides export
facilities for use with the simulation packages 'rxode2' and
'mrgsolve'. The package itself is licensed under the GPL (>= 3); the
JSON schema file shipped in inst/extdata is licensed separately under
the Creative Commons Attribution 4.0 International (CC BY 4.0). This
package is designed and intended to be used with the package
'campsi [...truncated...]
Author: Nicolas Luyckx [aut, cre]
Maintainer: Nicolas Luyckx <nicolas.luyckx@calvagone.com>
Diff between campsismod versions 1.3.0 dated 2026-01-27 and 1.3.1 dated 2026-03-17
DESCRIPTION | 14 +++++++------- MD5 | 17 +++++++++-------- NAMESPACE | 4 ++++ NEWS.md | 6 ++++++ R/campsis_model.R | 11 +++++++++-- R/json_interface.R | 29 ++++++++++++++++++++++++++++- README.md | 2 ++ man/CampsisModel.Rd | 5 ++++- man/hasExactMethod.Rd |only tests/testthat/testJSONInterface.R | 8 ++++---- 10 files changed, 73 insertions(+), 23 deletions(-)
Title: Download Data from the 'Bank of England' Statistical Database
Description: Provides functions to download and tidy statistical data
published by the 'Bank of England' <https://www.bankofengland.co.uk>.
Covers Bank Rate, 'SONIA', gilt yields, exchange rates, mortgage rates,
mortgage approvals, consumer credit, and money supply. Series are
fetched from the 'Bank of England Interactive Statistical Database'
using its CSV endpoint. Data is cached locally between sessions.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between boe versions 0.1.0 dated 2026-03-12 and 0.1.2 dated 2026-03-17
DESCRIPTION | 14 +++++----- MD5 | 55 +++++++++++++++++++++--------------------- NEWS.md | 10 +++++++ R/boe-package.R | 9 ++++++ R/boe_bank_rate.R | 3 ++ R/boe_consumer_credit.R | 3 ++ R/boe_exchange_rate.R | 4 +++ R/boe_get.R | 3 ++ R/boe_money_supply.R | 3 ++ R/boe_mortgage_approvals.R | 3 ++ R/boe_mortgage_rates.R | 3 ++ R/boe_sonia.R | 3 ++ R/boe_yield_curve.R | 3 ++ R/clear_cache.R | 5 +++ R/utils.R | 20 ++++++++++++++- README.md | 40 ++++++++++++++++++------------ inst/CITATION |only man/boe-package.Rd | 13 ++++++++- man/boe_bank_rate.Rd | 8 ++++++ man/boe_consumer_credit.Rd | 8 ++++++ man/boe_exchange_rate.Rd | 7 +++++ man/boe_get.Rd | 7 +++++ man/boe_money_supply.Rd | 3 ++ man/boe_mortgage_approvals.Rd | 8 ++++++ man/boe_mortgage_rates.Rd | 8 ++++++ man/boe_sonia.Rd | 8 ++++++ man/boe_yield_curve.Rd | 8 ++++++ man/clear_cache.Rd | 7 +++++ man/list_exchange_rates.Rd | 5 +++ 29 files changed, 217 insertions(+), 54 deletions(-)
Title: Construct Natural-Language Lists with Internationalization
Description: Construct language-aware lists. Make "and"-separated and
"or"-separated lists that automatically conform to the user's language
settings.
Author: Alexander Rossell Hayes [aut, cre, cph] ,
Unicode, Inc. [dtc] ,
Flavia Rossell Hayes [ill]
Maintainer: Alexander Rossell Hayes <alexander@rossellhayes.com>
Diff between and versions 0.1.7 dated 2025-12-01 and 0.1.8 dated 2026-03-17
DESCRIPTION | 6 +++--- MD5 | 34 ++++++++++++++++++++++++++-------- NEWS.md | 17 +++++++++++++++++ README.md | 24 ++++++++++++++---------- data/and_languages.rda |binary inst/po/ba |only inst/po/en_EE |only inst/po/en_GE |only inst/po/en_LT |only inst/po/en_LV |only inst/po/en_UA |only inst/po/eo |only inst/po/ml/LC_MESSAGES/R-and.mo |binary inst/po/ne/LC_MESSAGES/R-and.mo |binary inst/po/scn |only inst/po/shn |only po/R-ba.po |only po/R-en_EE.po |only po/R-en_GE.po |only po/R-en_LT.po |only po/R-en_LV.po |only po/R-en_UA.po |only po/R-eo.po |only po/R-ml.po | 8 ++++---- po/R-ne.po | 7 ++----- po/R-scn.po |only po/R-shn.po |only 27 files changed, 66 insertions(+), 30 deletions(-)
Title: Robust Systematic Conservation Prioritization
Description: Systematic conservation prioritization with robust optimization techniques.
This is important because
conservation prioritizations typically only consider the most likely outcome
associated with a conservation action (e.g., establishing a protected area
will safeguard a threatened species population) and fail to consider other
outcomes and their consequences for meeting conservation objectives. By
extending the 'prioritizr' package, this package can be used to generate
conservation prioritizations that account of uncertainty in the climate
change scenario projections, species distribution models, ecosystem service
models, and measurement errors. In particular, prioritizations can be
generated to be fully robust to uncertainty by minimizing (or maximizing)
objectives under the worst possible outcome. Since reducing the uncertainty
associated with achieving conservation objectives may sacrifice other
objectives (e.g., minimizing protected area implementation costs),
prioritizations can a [...truncated...]
Author: Frankie Cho [aut, cre, cph] ,
Jeffrey O Hanson [aut]
Maintainer: Frankie Cho <frankie.cho@monash.edu>
Diff between robust.prioritizr versions 1.0.2 dated 2026-03-03 and 1.0.3 dated 2026-03-17
DESCRIPTION | 22 +++++++++++----------- MD5 | 10 +++++----- NEWS.md | 3 +++ README.md | 23 ++++++++++++----------- inst/doc/climate-sdm.html | 2 +- man/figures/README-unnamed-chunk-5-1.png |binary 6 files changed, 32 insertions(+), 28 deletions(-)
More information about robust.prioritizr at CRAN
Permanent link
Title: A Library for using 'Pathling'
Description: R API for 'Pathling', a tool for querying and transforming electronic health record data that is represented using the 'Fast Healthcare Interoperability Resources' (FHIR) standard - see <https://pathling.csiro.au/docs>.
Author: Australian e-Health Research Centre, CSIRO [cph, cre],
Piotr Szul [aut],
John Grimes [aut]
Maintainer: "Australian e-Health Research Centre, CSIRO" <pathling@csiro.au>
Diff between pathling versions 9.4.0 dated 2026-02-24 and 9.5.0 dated 2026-03-17
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: A Package to Test for Multi-Trait Association
Description: Performs genetic association tests between SNPs
(one-at-a-time) and multiple phenotypes (separately or in joint
model).
Author: Lachlan Coin [aut, cre],
Paul O'Reilly [aut],
Yotsawat Pompyen [aut],
Clive Hoggart [aut],
Federico Calboli [aut]
Maintainer: Lachlan Coin <l.coin@imb.uq.edu.au>
Diff between MultiPhen versions 2.0.3 dated 2020-02-09 and 2.0.4 dated 2026-03-17
MultiPhen-2.0.3/MultiPhen/build |only MultiPhen-2.0.3/MultiPhen/inst |only MultiPhen-2.0.3/MultiPhen/vignettes |only MultiPhen-2.0.4/MultiPhen/DESCRIPTION | 36 ++++++++++++++----- MultiPhen-2.0.4/MultiPhen/MD5 | 22 ++--------- MultiPhen-2.0.4/MultiPhen/NAMESPACE | 4 -- MultiPhen-2.0.4/MultiPhen/NEWS.md |only MultiPhen-2.0.4/MultiPhen/R/MultiPhen-internal.R | 12 ------ MultiPhen-2.0.4/MultiPhen/man/mPhen.defineOptions.Rd | 2 - 9 files changed, 35 insertions(+), 41 deletions(-)