Title: Event/Timeline Prediction Model Based on Piecewise Exponential
Description: Efficient algorithm for estimating piecewise exponential hazard models for right-censored data, and is useful for reliable power calculation, study design, and event/timeline prediction for study monitoring.
Author: Tianchen Xu [aut, cre]
Maintainer: Tianchen Xu <zjph602xutianchen@gmail.com>
Diff between PwePred versions 1.0.0 dated 2025-04-10 and 1.1.0 dated 2026-03-21
DESCRIPTION | 8 +-- MD5 | 29 +++++------ NAMESPACE | 13 ++++ R/acc.R | 116 ++++++++++++++++++++++++++++++++++++++++++++ R/fitting.R | 3 - R/plot_fun.R | 16 +++--- R/sim_followup_fun.R | 1 inst/NEWS.Rd | 12 ++++ inst/doc/Theory_Notes.html | 9 +-- man/boot_fit_pwexpm_surv.Rd | 3 - man/coef.Rd |only man/fit_pwexpm_surv.Rd | 4 - man/plot_event.Rd | 11 +++- man/plot_km.Rd | 13 +++- man/predict.Rd | 6 +- man/sim_followup.Rd | 32 ++++++------ 16 files changed, 219 insertions(+), 57 deletions(-)
Title: A Blazing Fast Implementation of Random Forest
Description: Yet another implementation of the Random Forest method by Breiman (2001) <doi:10.1023/A:1010933404324>, written in Rust and tailored towards stability, correctness, efficiency and scalability on modern multi-core machines.
Handles both classification and regression, as well as provides permutation feature importance via a novel, highly optimised algorithm.
Author: Miron Bartosz Kursa [aut, cre] ,
Krzysztof Piotr Piwonski [aut]
Maintainer: Miron Bartosz Kursa <m@mbq.me>
Diff between fru versions 0.0.3 dated 2026-02-05 and 0.0.4 dated 2026-03-21
DESCRIPTION | 6 - MD5 | 29 +++-- R/a.R | 1 inst |only src/Makevars.win | 3 src/fru/src/classification.rs | 43 ++++++++ src/fru/src/classification/impurity.rs | 141 ++++++++++++++++------------ src/fru/src/lib.rs | 3 src/fru/src/regression.rs | 47 ++++++++- src/fru/src/regression/impurity.rs | 99 +++++++++++++------ src/fru/src/regression/votes.rs | 8 - src/fru/src/tools.rs |only src/fru/vendor.tar.xz |only src/wrapper.c | 2 src/xrf/Cargo.lock | 2 src/xrf/Cargo.toml | 2 src/xrf/src/forest/importance_aggregator.rs | 21 +++- 17 files changed, 285 insertions(+), 122 deletions(-)
Title: Genotype Calling with Uncertainty from Sequencing Data in
Polyploids and Diploids
Description: Read depth data from genotyping-by-sequencing (GBS) or restriction
site-associated DNA sequencing (RAD-seq) are imported and used to make Bayesian
probability estimates of genotypes in polyploids or diploids. The genotype
probabilities, posterior mean genotypes, or most probable genotypes can then
be exported for downstream analysis. 'polyRAD' is described by Clark et al.
(2019) <doi:10.1534/g3.118.200913>, and the Hind/He statistic for marker
filtering is described by Clark et al. (2022) <doi:10.1186/s12859-022-04635-9>.
A variant calling pipeline for highly duplicated genomes is also included and
is described by Clark et al. (2020, Version 1) <doi:10.1101/2020.01.11.902890>.
Author: Lindsay V. Clark [aut, cre] ,
U.S. National Science Foundation [fnd]
Maintainer: Lindsay V. Clark <Lindsay.Clark@seattlechildrens.org>
Diff between polyRAD versions 2.0.0 dated 2022-11-06 and 2.0.1 dated 2026-03-21
DESCRIPTION | 13 MD5 | 36 +- NEWS.md | 9 R/classes_methods.R | 9 R/data_export.R | 2 R/data_import.R | 45 ++- R/overdispersion.R | 3 build/partial.rdb |binary build/vignette.rds |binary inst/doc/isolocus_sorting.R | 42 +- inst/doc/isolocus_sorting.html | 101 +++---- inst/doc/polyRADtutorial.R | 206 +++++++------- inst/doc/polyRADtutorial.Rmd | 2 inst/doc/polyRADtutorial.html | 577 ++++++++++++++++++++--------------------- inst/python/process_isoloci.py | 3 man/LocusInfo.Rd | 2 man/VCF2RADdata.Rd | 3 man/readStacks.Rd | 7 vignettes/polyRADtutorial.Rmd | 2 19 files changed, 549 insertions(+), 513 deletions(-)
Title: Inference for Maximin Effects in High-Dimensional Settings
Description: Implementation of the sampling and aggregation method for the covariate shift maximin effect, which was proposed in <doi:10.48550/arXiv.2011.07568>. It constructs the confidence interval for any linear combination of the high-dimensional maximin effect.
Author: Zhenyu Wang [aut, cre],
Zijian Guo [aut]
Maintainer: Zhenyu Wang <zw425@stat.rutgers.edu>
Diff between MaximinInfer versions 2.0.0 dated 2023-04-12 and 2.1.0 dated 2026-03-21
DESCRIPTION | 18 ++++++++++-------- MD5 | 4 ++-- R/utils.R | 9 ++++----- 3 files changed, 16 insertions(+), 15 deletions(-)
Title: R Bindings for 'ZeroMQ'
Description: Interface to the 'ZeroMQ' lightweight messaging kernel (see <https://zeromq.org/> for more information).
Author: Whit Armstrong [aut],
Michael Schubert [ctb],
Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between rzmq versions 0.9.15 dated 2024-12-16 and 0.9.16 dated 2026-03-21
DESCRIPTION | 9 ++++----- MD5 | 4 ++-- src/interface.cpp | 21 --------------------- 3 files changed, 6 insertions(+), 28 deletions(-)
Title: Visualization and Analysis of Nominal Variable Distributions
Description: Provides tools for visualizing and analyzing the shape of discrete nominal frequency distributions. The package introduces centered frequency plots, in which nominal categories are ordered from the most frequent category at the center toward less frequent categories on both sides, facilitating the detection of distributional patterns such as uniformity, dominance, symmetry, skewness, and long-tail behavior. In addition, the package supports Pareto charts for the study of dominance and cumulative frequency structure in nominal data. The package is designed for exploratory data analysis and statistical teaching, offering visualizations that emphasize distributional form rather than arbitrary category ordering.
Author: Norberto Asensio [aut, cre]
Maintainer: Norberto Asensio <norberto.asensio@ehu.eus>
Diff between nomiShape versions 1.0.1 dated 2026-02-24 and 1.0.2 dated 2026-03-21
nomiShape-1.0.1/nomiShape/R/sysdata.rda |only nomiShape-1.0.2/nomiShape/DESCRIPTION | 6 nomiShape-1.0.2/nomiShape/MD5 | 37 - nomiShape-1.0.2/nomiShape/NAMESPACE | 7 nomiShape-1.0.2/nomiShape/NEWS.md | 13 nomiShape-1.0.2/nomiShape/R/data.R | 45 + nomiShape-1.0.2/nomiShape/R/rare_plot.R |only nomiShape-1.0.2/nomiShape/R/zipf_rank_plot.R |only nomiShape-1.0.2/nomiShape/build/vignette.rds |binary nomiShape-1.0.2/nomiShape/data/alice.rda |only nomiShape-1.0.2/nomiShape/data/kafka.rda |only nomiShape-1.0.2/nomiShape/inst/doc/nominal_distribution_shapes.R | 75 +- nomiShape-1.0.2/nomiShape/inst/doc/nominal_distribution_shapes.Rmd | 128 ++- nomiShape-1.0.2/nomiShape/inst/doc/nominal_distribution_shapes.html | 326 ++++++---- nomiShape-1.0.2/nomiShape/inst/doc/rare_plot.R |only nomiShape-1.0.2/nomiShape/inst/doc/rare_plot.Rmd |only nomiShape-1.0.2/nomiShape/inst/doc/rare_plot.html |only nomiShape-1.0.2/nomiShape/inst/doc/zipf_rank_plot.R |only nomiShape-1.0.2/nomiShape/inst/doc/zipf_rank_plot.Rmd |only nomiShape-1.0.2/nomiShape/inst/doc/zipf_rank_plot.html |only nomiShape-1.0.2/nomiShape/man/alice.Rd |only nomiShape-1.0.2/nomiShape/man/kafka.Rd |only nomiShape-1.0.2/nomiShape/man/rare_plot.Rd |only nomiShape-1.0.2/nomiShape/man/ufo.Rd | 22 nomiShape-1.0.2/nomiShape/man/zipf_rank_plot.Rd |only nomiShape-1.0.2/nomiShape/vignettes/nominal_distribution_shapes.Rmd | 128 ++- nomiShape-1.0.2/nomiShape/vignettes/rare_plot.Rmd |only nomiShape-1.0.2/nomiShape/vignettes/zipf_rank_plot.Rmd |only 28 files changed, 548 insertions(+), 239 deletions(-)
Title: Vector Helpers
Description: Defines new notions of prototype and size that are used to
provide tools for consistent and well-founded type-coercion and
size-recycling, and are in turn connected to ideas of type- and
size-stability useful for analysing function interfaces.
Author: Hadley Wickham [aut],
Lionel Henry [aut],
Davis Vaughan [aut, cre],
data.table team [cph] and
their contribution to R's order),
Posit Software, PBC [cph, fnd]
Maintainer: Davis Vaughan <davis@posit.co>
Diff between vctrs versions 0.7.1 dated 2026-01-23 and 0.7.2 dated 2026-03-21
vctrs-0.7.1/vctrs/R/translate.R |only vctrs-0.7.1/vctrs/src/translate.c |only vctrs-0.7.1/vctrs/src/translate.h |only vctrs-0.7.1/vctrs/tests/testthat/test-translate.R |only vctrs-0.7.2/vctrs/DESCRIPTION | 6 vctrs-0.7.2/vctrs/MD5 | 177 +++---- vctrs-0.7.2/vctrs/NEWS.md | 36 + vctrs-0.7.2/vctrs/R/encoding.R |only vctrs-0.7.2/vctrs/R/equal.R | 8 vctrs-0.7.2/vctrs/inst/doc/stability.html | 4 vctrs-0.7.2/vctrs/inst/doc/type-size.html | 9 vctrs-0.7.2/vctrs/man/vec_equal.Rd | 5 vctrs-0.7.2/vctrs/src/altrep.c | 1 vctrs-0.7.2/vctrs/src/arg-counter.c | 6 vctrs-0.7.2/vctrs/src/assert.c | 16 vctrs-0.7.2/vctrs/src/bind.c | 19 vctrs-0.7.2/vctrs/src/cast-bare.c | 1 vctrs-0.7.2/vctrs/src/cast.c | 21 vctrs-0.7.2/vctrs/src/compare.c | 4 vctrs-0.7.2/vctrs/src/compare.h | 2 vctrs-0.7.2/vctrs/src/complete.c | 1 vctrs-0.7.2/vctrs/src/decl/encoding-decl.h |only vctrs-0.7.2/vctrs/src/decl/equal-decl.h |only vctrs-0.7.2/vctrs/src/decl/hash-decl.h | 3 vctrs-0.7.2/vctrs/src/decl/type-data-frame-decl.h | 3 vctrs-0.7.2/vctrs/src/dictionary.c | 20 vctrs-0.7.2/vctrs/src/dim.h | 2 vctrs-0.7.2/vctrs/src/encoding.c |only vctrs-0.7.2/vctrs/src/encoding.h |only vctrs-0.7.2/vctrs/src/equal.c | 364 +++++++++------- vctrs-0.7.2/vctrs/src/equal.h | 10 vctrs-0.7.2/vctrs/src/globals.h | 1 vctrs-0.7.2/vctrs/src/group.c | 6 vctrs-0.7.2/vctrs/src/hash.c | 23 - vctrs-0.7.2/vctrs/src/if-else.c | 6 vctrs-0.7.2/vctrs/src/init.c | 12 vctrs-0.7.2/vctrs/src/interval.c | 16 vctrs-0.7.2/vctrs/src/lazy.h | 1 vctrs-0.7.2/vctrs/src/list-combine.c | 10 vctrs-0.7.2/vctrs/src/match-compare.h | 1 vctrs-0.7.2/vctrs/src/match-joint.c | 4 vctrs-0.7.2/vctrs/src/names.c | 18 vctrs-0.7.2/vctrs/src/names.h | 2 vctrs-0.7.2/vctrs/src/order-collate.h | 4 vctrs-0.7.2/vctrs/src/order.c | 8 vctrs-0.7.2/vctrs/src/order.h | 1 vctrs-0.7.2/vctrs/src/proxy-restore.c | 173 ++++--- vctrs-0.7.2/vctrs/src/ptype.c | 6 vctrs-0.7.2/vctrs/src/ptype2-dispatch.c | 1 vctrs-0.7.2/vctrs/src/rep.h | 2 vctrs-0.7.2/vctrs/src/rlang/attrib.c | 125 ----- vctrs-0.7.2/vctrs/src/rlang/attrib.h | 56 +- vctrs-0.7.2/vctrs/src/rlang/cnd.c | 2 vctrs-0.7.2/vctrs/src/rlang/debug.c | 2 vctrs-0.7.2/vctrs/src/rlang/decl/env-binding-decl.h |only vctrs-0.7.2/vctrs/src/rlang/decl/env-decl.h | 7 vctrs-0.7.2/vctrs/src/rlang/decl/walk-decl.h | 2 vctrs-0.7.2/vctrs/src/rlang/dyn-array.c | 8 vctrs-0.7.2/vctrs/src/rlang/env-binding.c | 242 +++++++++- vctrs-0.7.2/vctrs/src/rlang/env-binding.h | 50 +- vctrs-0.7.2/vctrs/src/rlang/env.c | 112 ++-- vctrs-0.7.2/vctrs/src/rlang/env.h | 81 --- vctrs-0.7.2/vctrs/src/rlang/eval.c | 48 +- vctrs-0.7.2/vctrs/src/rlang/formula.c | 6 vctrs-0.7.2/vctrs/src/rlang/obj.c | 5 vctrs-0.7.2/vctrs/src/rlang/obj.h | 8 vctrs-0.7.2/vctrs/src/rlang/rlang-types.h | 71 +++ vctrs-0.7.2/vctrs/src/rlang/walk.c | 28 - vctrs-0.7.2/vctrs/src/runs.c | 2 vctrs-0.7.2/vctrs/src/set.c | 16 vctrs-0.7.2/vctrs/src/shape.c | 35 + vctrs-0.7.2/vctrs/src/size-common.c | 9 vctrs-0.7.2/vctrs/src/size.c | 26 - vctrs-0.7.2/vctrs/src/slice-assign.c | 4 vctrs-0.7.2/vctrs/src/slice-assign.h | 1 vctrs-0.7.2/vctrs/src/slice-chop.c | 8 vctrs-0.7.2/vctrs/src/slice.c | 25 - vctrs-0.7.2/vctrs/src/subscript-loc.h | 1 vctrs-0.7.2/vctrs/src/type-complex.h | 3 vctrs-0.7.2/vctrs/src/type-data-frame.c | 115 ++--- vctrs-0.7.2/vctrs/src/type-date-time.c | 8 vctrs-0.7.2/vctrs/src/type-factor.c | 4 vctrs-0.7.2/vctrs/src/type-factor.h | 1 vctrs-0.7.2/vctrs/src/type-tibble.h | 1 vctrs-0.7.2/vctrs/src/utils.c | 52 +- vctrs-0.7.2/vctrs/src/utils.h | 3 vctrs-0.7.2/vctrs/src/vctrs-core.h | 8 vctrs-0.7.2/vctrs/src/vctrs.h | 104 ++-- vctrs-0.7.2/vctrs/src/version.c | 2 vctrs-0.7.2/vctrs/tests/testthat/helper-encoding.R | 8 vctrs-0.7.2/vctrs/tests/testthat/test-encoding.R |only vctrs-0.7.2/vctrs/tests/testthat/test-equal.R | 81 +++ vctrs-0.7.2/vctrs/tests/testthat/test-hash.R | 21 vctrs-0.7.2/vctrs/tests/testthat/test-proxy-restore.R | 154 ++++++ vctrs-0.7.2/vctrs/tests/testthat/test-type-data-frame.R | 10 95 files changed, 1577 insertions(+), 991 deletions(-)
Title: Descriptive, Reliability, and Inferential Tables for
Psychometric Scales and Demographic Data
Description: Provides functions to format and summarise already computed outputs from commonly used statistical and psychometric functions into compact, single-row tables and simple graphs, with utilities to export results to CSV, Word, and Excel formats. The package does not implement new statistical methods or estimation procedures; instead, it organises and presents results obtained from existing functions such as psych::describe(), psych::alpha(), stats::t.test(), and gtsummary::tbl_summary() to streamline reporting workflows in clinical and psychological research.
Author: Darshankumar Dharaiya [aut, cre]
Maintainer: Darshankumar Dharaiya <dharaiya.darshan@gmail.com>
Diff between scaledescr versions 0.2.2 dated 2026-03-13 and 0.2.3 dated 2026-03-21
DESCRIPTION | 6 - MD5 | 32 +++++--- NAMESPACE | 6 + NEWS.md | 14 ++- R/compute_ICC.R |only R/make_alpha_table.R | 5 + R/make_alphanumeric_conversion.R |only R/make_chisq_test_table.R | 123 ++++++++++++++++++++++---------- R/make_independent_t_test_table.R | 2 R/make_one_sample_t_test_table.R |only R/make_reverse_score.R |only R/make_scale_description_table.R | 134 +++++++++++++++++------------------ R/make_scale_total.R |only inst/CITATION | 4 - man/compute_ICC.Rd |only man/make_alphanumeric_conversion.Rd |only man/make_chisq_test_table.Rd | 11 +- man/make_independent_t_test_table.Rd | 2 man/make_one_sample_t_test_table.Rd |only man/make_reverse_score.Rd |only man/make_scale_description_table.Rd | 42 ++++------ man/make_scale_total.Rd |only 22 files changed, 225 insertions(+), 156 deletions(-)
Title: Regression with Functional Data
Description: Methods for regression for functional
data, including function-on-scalar, scalar-on-function, and
function-on-function regression. Some of the functions are applicable to
image data.
Author: Jeff Goldsmith [aut],
Fabian Scheipl [aut],
Lei Huang [aut],
Julia Wrobel [aut, cre, cph],
Chongzhi Di [aut],
Jonathan Gellar [aut],
Jaroslaw Harezlak [aut],
Mathew W. McLean [aut],
Bruce Swihart [aut],
Luo Xiao [aut],
Ciprian Crainiceanu [aut],
Phil [...truncated...]
Maintainer: Julia Wrobel <julia.wrobel@emory.edu>
Diff between refund versions 0.1-38 dated 2025-11-17 and 0.1-40 dated 2026-03-21
DESCRIPTION | 45 MD5 | 198 ++ NAMESPACE | 12 R/GLS_CS.R | 169 +- R/Gibbs_CS_FPCA.R | 297 ++-- R/Gibbs_CS_Wish.R | 147 +- R/Gibbs_Mult_FPCA.R | 344 ++--- R/Gibbs_Mult_Wish.R | 226 ++- R/OLS_CS.R | 117 + R/VB_CS_FPCA.R | 424 ++++-- R/VB_CS_Wish.R | 272 ++- R/VB_Mult_FPCA.R | 366 +++-- R/VB_Mult_Wish.R | 314 +++- R/bayes_fosr.R | 106 - R/fosr.R | 584 ++++---- R/peer.R | 102 - R/pffr-core.R |only R/pffr-ff.R | 261 +-- R/pffr-ffpc.R | 310 ++-- R/pffr-formula.R |only R/pffr-methods.R | 1693 ++++++++++++++++++------ R/pffr-robust.R | 1811 +++++++++++++------------- R/pffr-sff.R | 160 +- R/pffr-simulate.R |only R/pffr-utilities.R | 2328 +++++++++++++++++++++++++++++----- R/pffr.R | 851 ++---------- R/re.R | 19 build |only man/apply_sandwich_correction.Rd |only man/assemble_cluster_sandwich.Rd |only man/bayes_fosr.Rd | 24 man/build_cl2_working_gaulss.Rd |only man/build_cl2_working_standard.Rd |only man/build_cluster_id.Rd |only man/build_coef_axes.Rd |only man/build_coef_linear_map.Rd |only man/build_limits_function.Rd |only man/build_mgcv_data.Rd |only man/build_mgcv_formula.Rd |only man/center_concurrent_covariate.Rd |only man/center_ff_beta.Rd |only man/center_functional_covariate.Rd |only man/center_smooth_effect.Rd |only man/coef.pffr.Rd | 62 man/coef_get_predictions.Rd |only man/coef_make_data_grid.Rd |only man/coef_safe_range.Rd |only man/coefboot.pffr.Rd | 19 man/compute_ci_critical.Rd |only man/compute_coef_se.Rd |only man/compute_concurrent_effect.Rd |only man/compute_const_effect.Rd |only man/compute_ff_effect.Rd |only man/compute_gaulss_scores.Rd |only man/compute_integration_weights.Rd |only man/compute_integration_windows.Rd |only man/compute_intercept.Rd |only man/compute_linear_effect.Rd |only man/compute_smooth_effect.Rd |only man/concurrent_presets.Rd |only man/const_presets.Rd |only man/create_shortlabels.Rd |only man/draw_coef_perturbations.Rd |only man/ensure_grid_axis_attributes.Rd |only man/eval_bs.Rd |only man/expand_windows_to_maxwidth.Rd |only man/ff_presets.Rd |only man/finalize_grid_by_var.Rd |only man/fosr.Rd | 2 man/gam_sandwich_cluster.Rd |only man/gam_sandwich_cluster_cl2.Rd |only man/gen_random_1d.Rd |only man/gen_random_2d.Rd |only man/generate_functional_covariate.Rd |only man/generate_scalar_covariate.Rd |only man/get_default_effect.Rd |only man/get_smooth_label_from_term.Rd |only man/gibbs_cs_fpca.Rd | 13 man/gibbs_cs_wish.Rd | 7 man/gibbs_mult_fpca.Rd | 14 man/gibbs_mult_wish.Rd | 7 man/gls_cs.Rd | 17 man/intercept_presets.Rd |only man/linear_presets.Rd |only man/make_bs_spec.Rd |only man/make_random_2d_fn.Rd |only man/make_random_truth_generator.Rd |only man/ols_cs.Rd | 16 man/parse_pffr_formula.Rd |only man/parse_pffr_model_formula.Rd |only man/parse_single_term.Rd |only man/peer.Rd | 4 man/pffr-core.Rd |only man/pffr-formula.Rd |only man/pffr.Rd | 46 man/pffr.check.Rd | 11 man/pffrGLS.Rd | 59 man/pffrSim.Rd | 93 - man/pffrSim_formula.Rd |only man/pffrSim_legacy.Rd |only man/pffr_attach_metadata.Rd |only man/pffr_build_ar_start.Rd |only man/pffr_build_call.Rd |only man/pffr_build_label_map.Rd |only man/pffr_build_metadata.Rd |only man/pffr_check.Rd |only man/pffr_coefboot.Rd |only man/pffr_configure_algorithm.Rd |only man/pffr_expand_variables.Rd |only man/pffr_get_dimensions.Rd |only man/pffr_gls.Rd |only man/pffr_prepare.Rd |only man/pffr_process_ff_terms.Rd |only man/pffr_process_ffpc_terms.Rd |only man/pffr_process_pcre_terms.Rd |only man/pffr_qq.Rd |only man/pffr_setup_response.Rd |only man/pffr_setup_yind_dense.Rd |only man/pffr_setup_yind_sparse.Rd |only man/pffr_simulate.Rd |only man/pffr_validate_dots.Rd |only man/pffr_validate_ydata.Rd |only man/qq.pffr.Rd | 11 man/re.Rd | 9 man/residuals.pffr.Rd | 17 man/resolve_effect.Rd |only man/resolve_eval_grid_for_term.Rd |only man/sample_pspline_coef_1d.Rd |only man/sample_pspline_coef_2d.Rd |only man/scenario_to_formula.Rd |only man/sff.Rd | 4 man/shift_and_shorten_matrix.Rd |only man/simplify_term_label.Rd |only man/simpson_weights.Rd |only man/simulate_from_family.Rd |only man/smooth_presets.Rd |only man/sym_inv_sqrt.Rd |only man/transform_c_term.Rd |only man/transform_intercept_term.Rd |only man/transform_par_term.Rd |only man/transform_smooth_term.Rd |only man/validate_and_expand_xind.Rd |only man/vb_cs_fpca.Rd | 14 man/vb_cs_wish.Rd | 19 man/vb_mult_fpca.Rd | 15 man/vb_mult_wish.Rd | 13 tests/testthat/Rplots.pdf |only tests/testthat/helper-pffr-fixtures.R |only tests/testthat/helper-pffrSim.R |only tests/testthat/test-pffr-ar.R |only tests/testthat/test-pffr.R | 2065 ++++++++++++++++++++++++++++-- tests/testthat/test-pffrSim.R |only 152 files changed, 9462 insertions(+), 4255 deletions(-)
Title: Protein Quantification in Mass Spectrometry-Based Proteomics
Description: An implementation of the MaxLFQ algorithm by
Cox et al. (2014) <doi:10.1074/mcp.M113.031591> in a comprehensive
pipeline for processing proteomics data in data-independent acquisition mode
(Pham et al. 2020 <doi:10.1093/bioinformatics/btz961>;
Pham et al. 2026 <doi:10.1021/acs.jproteome.5c01038>).
It offers additional options for protein quantification using
the N most intense fragment ions, using all fragment ions,
the median polish algorithm by Tukey (1977, ISBN:0201076160),
and a robust linear model. In general, the tool can be used to integrate
multiple proportional observations into a single quantitative value.
Author: Thang Pham [aut, cre, cph, ctb] ,
Alex Henneman [ctb]
Maintainer: Thang Pham <t.pham@amsterdamumc.nl>
Diff between iq versions 2.0.0 dated 2025-10-06 and 2.0.1 dated 2026-03-21
DESCRIPTION | 15 ++++++++------- LICENSE | 2 +- MD5 | 16 ++++++++-------- R/iq-fast.R | 2 +- R/iq.R | 2 ++ build/vignette.rds |binary inst/CITATION | 33 ++++++++++++++++++++++----------- inst/doc/iq-fast.html | 5 +++-- inst/doc/iq.html | 5 +++-- 9 files changed, 48 insertions(+), 32 deletions(-)
Title: Download and Process GIMMS NDVI3g Data
Description: This is a set of functions to retrieve information about GIMMS
NDVI3g files currently available online; download (and re-arrange, in the
case of NDVI3g.v0) the half-monthly data sets; import downloaded files from
ENVI binary (NDVI3g.v0) or NetCDF format (NDVI3g.v1) directly into R based
on the widespread 'raster' package; conduct quality control; and generate
monthly composites (e.g., maximum values) from the half-monthly input data.
As a special gimmick, a method is included to conveniently apply the
Mann-Kendall trend test upon 'Raster*' images, optionally featuring
trend-free pre-whitening to account for lag-1 autocorrelation.
Author: Florian Detsch [cre, aut]
Maintainer: Florian Detsch <fdetsch@web.de>
Diff between gimms versions 1.2.4 dated 2025-11-30 and 1.2.5 dated 2026-03-21
DESCRIPTION | 10 LICENSE | 4 MD5 | 69 +-- NAMESPACE | 42 +- NEWS | 206 +++++----- NEWS.md | 206 +++++----- R/downloadGimms.R | 510 ++++++++++++------------- R/gimms-package.R | 110 ++--- R/gimmsControls.R | 600 ++++++++++++++--------------- R/monthlyComposite.R | 288 +++++++------- R/monthlyIndices.R | 182 ++++----- R/oldNaming.R | 164 ++++---- R/qualityControl.R | 314 +++++++-------- R/rasterizeGimms.R | 496 ++++++++++++------------ R/rearrangeFiles.R | 132 +++--- R/significantTau.R | 424 ++++++++++----------- R/updateInventory.R | 722 ++++++++++++++++++------------------ README.md | 254 ++++++------ build/partial.rdb |binary inst/extdata/poles.html | 20 inst/tinytest/test-getPolesFTP.R | 178 ++++---- inst/tinytest/test-significantTau.R |only inst/tinytest/tests.R | 206 +++++----- man/bale3g.v1.Rd | 32 - man/downloadGimms.Rd | 266 ++++++------- man/gimms-package.Rd | 84 ++-- man/kili3g.v0.Rd | 32 - man/monthlyComposite.Rd | 156 +++---- man/monthlyIndices.Rd | 116 ++--- man/oldNaming.Rd | 98 ++-- man/qualityControl.Rd | 118 ++--- man/rasterizeGimms.Rd | 164 ++++---- man/rearrangeFiles.Rd | 82 ++-- man/significantTau.Rd | 244 ++++++------ man/updateInventory.Rd | 132 +++--- tests/tinytest.R | 10 36 files changed, 3338 insertions(+), 3333 deletions(-)
Title: General Network (HTTP/FTP/...) Client Interface for R
Description: A wrapper for 'libcurl' <https://curl.se/libcurl/>
Provides functions to allow one to compose general HTTP requests
and provides convenient functions to fetch URIs, get & post
forms, etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP/FTP/...
connection and the form of the request while providing a
higher-level interface than is available just using R socket
connections. Additionally, the underlying implementation is
robust and extensive, supporting FTP/FTPS/TFTP (uploads and
downloads), SSL/HTTPS, telnet, dict, ldap, and also supports
cookies, redirects, authentication, etc.
Author: CRAN Team [ctb, cre] ,
Duncan Temple Lang [aut]
Maintainer: CRAN Team <CRAN@r-project.org>
Diff between RCurl versions 1.98-1.17 dated 2025-03-22 and 1.98-1.18 dated 2026-03-21
DESCRIPTION | 9 +++++---- MD5 | 4 ++-- src/curl.c | 6 +++++- 3 files changed, 12 insertions(+), 7 deletions(-)
Title: Sparse and Dense Matrix Classes and Methods
Description: A rich hierarchy of sparse and dense matrix classes,
including general, symmetric, triangular, and diagonal matrices
with numeric, logical, or pattern entries. Efficient methods for
operating on such matrices, often wrapping the 'BLAS', 'LAPACK',
and 'SuiteSparse' libraries.
Author: Douglas Bates [aut] ,
Martin Maechler [aut, cre] ,
Mikael Jagan [aut] ,
Timothy A. Davis [ctb] ,
pattern="License", full.names=TRUE, recursive=TRUE)),
George Karypis [ctb] ,
Jason Riedy [ctb] and onenormest, Copyright: Regents of the
University of C [...truncated...]
Maintainer: Martin Maechler <mmaechler+Matrix@gmail.com>
Diff between Matrix versions 1.7-4 dated 2025-08-28 and 1.7-5 dated 2026-03-21
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 9 +++++++++ inst/doc/Comparisons.pdf |binary inst/doc/Design-issues.pdf |binary inst/doc/Intro2Matrix.pdf |binary inst/doc/Introduction.pdf |binary inst/doc/sparseModels.pdf |binary inst/include/Matrix/version.h | 4 ++-- src/cholmod-common.c | 5 +++++ src/version.h | 4 ++-- 13 files changed, 34 insertions(+), 20 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-22 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-09-27 1.1.1
2018-06-08 1.1.0
2018-03-14 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-19 0.2.1
2020-09-25 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-02-08 0.0.1.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-26 1.3.5
2018-04-29 1.3.4
2017-05-22 1.3.2
2016-08-26 1.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-24 1.0.2
2020-04-14 1.0.1
2019-12-18 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-08-03 1.2.1
2019-01-07 1.0.0
2018-06-17 0.6.0
2018-04-08 0.5.0
2018-02-19 0.4.0
2018-02-18 0.3.0
2018-01-09 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-12-14 0.8.1
2021-12-01 0.8.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-22 1.2.0
2019-06-12 1.1.0
2019-01-25 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-25 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-26 0.5.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-08 0.1.0
Title: Client for US Treasury XML Feed and Published Data
Description: Download daily interest rates from the US Treasury XML feed.
Leveraging
<https://home.treasury.gov/treasury-daily-interest-rate-xml-feed>,
this package serves as a wrapper, facilitating the retrieval of daily
treasury rates across various categories, including par yield curves,
treasury bills, long-term rates, and real yield curves.
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between treasury versions 0.4.0 dated 2025-08-26 and 0.5.0 dated 2026-03-21
DESCRIPTION | 8 ++++---- MD5 | 20 +++++++++++--------- NAMESPACE | 4 ++++ NEWS.md | 4 ++++ R/cache.R |only R/interest-rate.R | 14 ++++++++------ R/treasury-package.R | 6 ++++++ README.md | 18 ++++++++---------- man/figures/README-plot-1.png |binary man/tr_cache_dir.Rd |only tests/testthat/test-interest-rate.R | 6 +++--- tests/testthat/test-yield-curve.R | 18 +++++++++--------- 12 files changed, 57 insertions(+), 41 deletions(-)
Title: Signature Overrepresentation Analysis
Description: Pathway Analysis is statistically linking observations on
the molecular level to biological processes or pathways on
the systems(i.e., organism, organ, tissue, cell) level.
Traditionally, pathway analysis methods regard pathways
as collections of single genes and treat all genes in a pathway
as equally informative. However, this can lead to identifying
spurious pathways as statistically significant since components
are often shared amongst pathways. SIGORA seeks to avoid this
pitfall by focusing on genes or gene pairs that are (as a combination)
specific to a single pathway.
In relying on such pathway gene-pair signatures (Pathway-GPS),
SIGORA inherently uses the status of other genes in the
experimental context to identify the most relevant pathways.
The current version allows for pathway analysis of human
and mouse datasets. In addition, it contains pre-computed
Pathway-GPS data for pathways in the KEGG and Reactome
pathway repositories and mechanisms for extracting GPS
for user-sup [...truncated...]
Author: Amir Foroushani [aut] ,
Fiona Brinkman [aut],
David Lynn [aut],
Witold Wolski [cre]
Maintainer: Witold Wolski <witold.wolski@fgcz.uzh.ch>
Diff between sigora versions 3.1.1 dated 2021-11-30 and 3.2.0 dated 2026-03-21
DESCRIPTION | 21 MD5 | 68 +- NAMESPACE | 18 NEWS.md | 21 R/aa_package.R | 291 ++++----- R/genesFromRandomPathways.R | 112 +-- R/getGenes.R | 118 ++- R/getURL.R | 120 ++- R/load_data.R | 24 R/makeGPS.R | 407 ++++++------- R/ora.R | 189 +++--- R/sigora-package.R | 56 - R/sigora.R | 495 ++++++++-------- README.md | 122 ++-- build/vignette.rds |binary data/datalist | 12 inst/CITATION | 27 inst/doc/Sigora.R | 140 ++-- inst/doc/Sigora.Rmd | 348 +++++------ inst/doc/Sigora.html | 1247 +++++++++++++++++++++-------------------- man/genesFromRandomPathways.Rd | 115 +-- man/getGenes.Rd | 90 +- man/getURL.Rd | 83 +- man/idmap.Rd | 40 - man/kegH.Rd | 58 - man/kegM.Rd | 52 - man/load_data.Rd | 46 - man/makeGPS.Rd | 189 +++--- man/nciTable.Rd | 70 +- man/ora.Rd | 108 +-- man/reaH.Rd | 52 - man/reaM.Rd | 58 - man/sigora-package.Rd | 79 +- man/sigora.Rd | 211 +++--- vignettes/Sigora.Rmd | 348 +++++------ 35 files changed, 2807 insertions(+), 2628 deletions(-)
Title: Convert Digital Images into 'SpatRaster' Objects
Description: Generate 'SpatRaster' objects, as defined by the 'terra'
package, from digital images, using a specified spatial object as a
geographical reference.
Author: Diego Hernangomez [aut, cre, cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between rasterpic versions 0.3.1 dated 2026-01-14 and 0.4.0 dated 2026-03-21
rasterpic-0.3.1/rasterpic/inst/doc/rasterpic.Rmd |only rasterpic-0.3.1/rasterpic/vignettes/rasterpic.Rmd |only rasterpic-0.4.0/rasterpic/DESCRIPTION | 10 rasterpic-0.4.0/rasterpic/MD5 | 32 rasterpic-0.4.0/rasterpic/NEWS.md | 4 rasterpic-0.4.0/rasterpic/R/asp_ratio.R | 6 rasterpic-0.4.0/rasterpic/R/rasterpic_img.R | 34 rasterpic-0.4.0/rasterpic/R/utils.R | 19 rasterpic-0.4.0/rasterpic/README.md | 38 - rasterpic-0.4.0/rasterpic/build/vignette.rds |binary rasterpic-0.4.0/rasterpic/inst/doc/rasterpic.R | 24 rasterpic-0.4.0/rasterpic/inst/doc/rasterpic.html | 365 +++------- rasterpic-0.4.0/rasterpic/inst/doc/rasterpic.qmd |only rasterpic-0.4.0/rasterpic/inst/schemaorg.json | 4 rasterpic-0.4.0/rasterpic/man/asp_ratio.Rd | 6 rasterpic-0.4.0/rasterpic/man/rasterpic_img.Rd | 20 rasterpic-0.4.0/rasterpic/tests/testthat/_snaps/errors_messages.md | 14 rasterpic-0.4.0/rasterpic/tests/testthat/_snaps/online.md | 2 rasterpic-0.4.0/rasterpic/vignettes/rasterpic.qmd |only 19 files changed, 246 insertions(+), 332 deletions(-)
Title: Client for Central Bank APIs
Description: A client for retrieving data and metadata from major central
bank APIs. It supports access to the 'Bundesbank SDMX Web Service API'
(<https://www.bundesbank.de/en/statistics/time-series-databases/help-for-sdmx-web-service/web-service-interface-data>),
the 'Swiss National Bank Data Portal' (<https://data.snb.ch/en>), the
'European Central Bank Data Portal API'
(<https://data.ecb.europa.eu/help/api/overview>), the 'Bank of England
Interactive Statistical Database'
(<https://www.bankofengland.co.uk/boeapps/database>), the 'Banco de
España API'
(<https://www.bde.es/webbe/en/estadisticas/recursos/api-estadisticas-bde.html>),
the 'Bank for International Settlements SDMX Web Service'
(<https://stats.bis.org/api-doc/v1/>),
the 'Banque de France Web Service'
(<https://webstat.banque-france.fr/en/pages/guide-migration-api/>),
the 'Norges Bank SDMX Web Service'
(<https://www.norges-bank.no/en/topics/Statistics/open-data/>),
the 'Oesterreichische Nat [...truncated...]
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between bbk versions 0.8.0 dated 2025-10-01 and 0.9.0 dated 2026-03-21
DESCRIPTION | 14 ++- MD5 | 120 ++++++++++++++++++----------- NAMESPACE | 18 ++++ NEWS.md | 20 ++++ R/assertions.R | 3 R/bbk-package.R | 9 +- R/bbk.R | 96 +++++++++++------------ R/bde.R | 62 ++++++++++++-- R/bdf.R | 40 ++++++--- R/bis.R |only R/boc.R | 34 ++++---- R/boe.R | 63 +++++++++------ R/cache.R |only R/ecb.R | 89 ++++++++++++--------- R/fx-rates.R | 5 - R/nob.R |only R/onb.R | 39 +++++---- R/purrr.R |only R/sdmx.R |only R/snb.R | 79 ++++++++++++++----- R/srb.R |only R/utils.R | 6 - README.md | 22 ++++- man/bbk-package.Rd | 2 man/bbk_data.Rd | 9 +- man/bbk_dimension.Rd |only man/bbk_metadata.Rd | 11 ++ man/bbk_series.Rd | 9 +- man/bde_data.Rd | 7 + man/bde_latest.Rd |only man/bdf_codelist.Rd | 12 ++ man/bdf_data.Rd | 11 ++ man/bdf_dataset.Rd | 12 ++ man/bis_data.Rd |only man/bis_dimension.Rd |only man/bis_metadata.Rd |only man/boc_data.Rd | 7 + man/boe_data.Rd | 17 +++- man/cache.Rd |only man/ecb_data.Rd | 16 +++ man/ecb_dimension.Rd |only man/ecb_metadata.Rd | 11 ++ man/figures/README-plotting-1.png |binary man/nob_data.Rd |only man/nob_dimension.Rd |only man/nob_metadata.Rd |only man/onb_data.Rd | 9 +- man/onb_dimension.Rd | 11 ++ man/onb_frequency.Rd | 19 +++- man/onb_hierarchy.Rd | 11 ++ man/onb_metadata.Rd | 11 ++ man/onb_toc.Rd | 11 ++ man/snb_data.Rd | 7 + man/snb_dimension.Rd |only man/srb_calendar.Rd |only man/srb_cross_rates.Rd |only man/srb_data.Rd |only man/srb_series.Rd |only tests/testthat/fixtures/bde-latest.rds |only tests/testthat/fixtures/bis-data.xml |only tests/testthat/fixtures/bis-metadata.xml |only tests/testthat/fixtures/nob-data.xml |only tests/testthat/fixtures/nob-metadata.xml |only tests/testthat/fixtures/snb-dimensions.rds |only tests/testthat/fixtures/srb-calendar.rds |only tests/testthat/fixtures/srb-crossrates.rds |only tests/testthat/fixtures/srb-data.json |only tests/testthat/fixtures/srb-groups.json |only tests/testthat/fixtures/srb-series.json |only tests/testthat/test-bbk.R | 15 ++- tests/testthat/test-bde.R | 20 ++++ tests/testthat/test-bis.R |only tests/testthat/test-boe.R | 12 +- tests/testthat/test-ecb.R | 11 ++ tests/testthat/test-exchange-rates.R | 2 tests/testthat/test-nob.R |only tests/testthat/test-sdmx.R |only tests/testthat/test-snb.R | 14 +++ tests/testthat/test-srb.R |only 79 files changed, 712 insertions(+), 284 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-28 0.1.3
2022-01-08 0.1.2
2021-08-14 0.1.1
2021-07-14 0.1.0
2020-10-20 0.0.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-29 1.8.0
2021-03-05 1.0.2
2021-03-05 1.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-13 1.19
2018-11-20 1.18
2018-11-16 1.17
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-02 0.3.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-04 0.3.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-24 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-09 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-27 0.2.0
2019-09-07 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-26 0.2.0
2019-12-13 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-05 0.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-17 1.0.0
2018-02-21 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-23 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-20 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-09 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-25 0.3.1
2018-02-12 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-08 2.1.5
2019-12-19 2.1.4
2018-05-16 2.1.3
2017-11-27 2.1.2
2017-09-14 2.1.1
2016-05-03 2.0.2
2015-08-03 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-23 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-13 0.2.1
2020-10-02 0.2.0
2020-09-17 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-16 0.1.39
2025-05-13 0.1.38
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-17 1.1.1
Title: Stack and Reshape Datasets After Splitting Concatenated Values
Description: Online data collection tools like Google Forms often export
multiple-response questions with data concatenated in cells. The
concat.split (cSplit) family of functions splits such data into separate
cells. The package also includes functions to stack groups of columns and
to reshape wide data, even when the data are "unbalanced"---something
which reshape (from base R) does not handle, and which melt and dcast from
reshape2 do not easily handle.
Author: Ananda Mahto [aut, cre]
Maintainer: Ananda Mahto <mrdwab@gmail.com>
Diff between splitstackshape versions 1.4.8 dated 2019-04-21 and 1.4.8.1 dated 2026-03-21
DESCRIPTION | 14 +++++++++----- MD5 | 6 +++--- NEWS.md | 2 +- data/concatenated.RData |binary 4 files changed, 13 insertions(+), 9 deletions(-)
More information about splitstackshape at CRAN
Permanent link
Title: Geometrical Functionality of the 'spatstat' Family
Description: Defines spatial data types and supports geometrical operations
on them. Data types include point patterns, windows (domains),
pixel images, line segment patterns, tessellations and hyperframes.
Capabilities include creation and manipulation of data
(using command line or graphical interaction),
plotting, geometrical operations (rotation, shift, rescale,
affine transformation), convex hull, discretisation and
pixellation, Dirichlet tessellation, Delaunay triangulation,
pairwise distances, nearest-neighbour distances,
distance transform, morphological operations
(erosion, dilation, closing, opening), quadrat counting,
geometrical measurement, geometrical covariance,
colour maps, calculus on spatial domains,
Gaussian blur, level sets of images, transects of images,
intersections between objects, minimum distance matching.
(Excludes spatial data on a network, which are supported by
the package 'spatstat.linnet'.)
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Warick Brown [ctb],
Tilman Davies [ctb],
Ute Hahn [ctb],
Martin Hazelton [ctb],
Abdollah Jalilian [ctb],
Greg McSwiggan [ctb, cph],
Sebastian Meyer [ctb, cph],
Jens Oeh [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.geom versions 3.7-0 dated 2026-01-20 and 3.7-2 dated 2026-03-21
DESCRIPTION | 14 +- MD5 | 132 ++++++++++++------------ NAMESPACE | 15 ++ NEWS | 101 ++++++++++++++++++ R/colourschemes.R | 2 R/connected.R | 2 R/convexdist.R | 2 R/diagram.R | 2 R/distfun.R | 2 R/distmap.R | 47 +++++--- R/eval.im.R | 12 +- R/exactdt.R | 32 +++-- R/funxy.R | 2 R/hyperframe.R | 2 R/hypersub.R | 2 R/images.R | 2 R/layered.R | 2 R/marks.R | 2 R/minkowski.R | 204 +++++++++++++++++++++++++++++++------ R/morphology.R | 97 +++++++++-------- R/nncross.R | 11 +- R/nndist.R | 107 +++++++++++++------ R/nnfun.R | 2 R/nnmap.R | 21 ++- R/options.R | 6 + R/plot.im.R | 2 R/pointweights.R | 27 +++- R/pp3.R | 2 R/psp.R | 27 +++- R/simplepanel.R | 2 R/split.ppp.R | 2 R/sptfun.R |only R/tess.R | 137 ++++++++++++++++++++++++- R/texture.R | 2 R/units.R | 16 ++ R/util.R | 74 ++++++++++--- R/window.R | 51 +++++---- R/wingeom.R | 31 ++++- inst/doc/packagesizes.txt | 3 inst/info/packagesizes.txt | 3 man/FeretBox.Rd |only man/FeretDiamFun.Rd |only man/SupportFun.Rd |only man/distmap.ppp.Rd | 15 ++ man/fillholes.owin.Rd | 4 man/intensity.ppp.Rd | 5 man/macros/defns.Rd | 5 man/mergeTiles.Rd |only man/nncross.Rd | 14 ++ man/nndist.Rd | 10 + man/nnmap.Rd | 15 +- man/polarbody.Rd |only man/spatstat.geom-internal.Rd | 12 +- man/tess.Rd | 3 src/exactdist.c | 27 ++-- src/init.c | 12 +- src/knnXdist.h | 14 ++ src/knndist.h | 14 ++ src/knndistance.c | 228 ++++++++++++++++++++++++++++++++++-------- src/knngrid.c | 66 ++++++++++-- src/knngrid.h | 11 +- src/nndist.h | 9 + src/nndistX.h | 12 +- src/nndistance.c | 214 ++++++++++++++++++++++++++++++++------- src/nngrid.c | 63 ++++++++++- src/nngrid.h | 11 +- src/proto.h | 12 +- tests/testsGtoJ.R | 24 ++++ tests/testsNtoO.R | 37 ++++++ tests/testsP2.R | 21 +++ 70 files changed, 1587 insertions(+), 473 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-26 1.2.0
2020-06-14 1.1.1
2020-03-19 1.1.0
2019-12-04 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-24 1.2.2
2018-10-31 1.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-19 0.1.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-02 0.2.0
2018-07-19 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-07 1.3.1
2021-01-25 1.3.0
2020-11-09 1.2.7
2020-10-02 1.2.6
2020-08-26 1.2.5
2020-07-13 1.2.4
2020-07-05 1.2.3
2020-06-21 1.2.2
2020-05-23 1.2.1
2020-04-28 1.2
2020-04-20 1.1.9
2020-03-18 1.1.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-13 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-24 0.2.0
2018-01-17 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-06 1.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-30 0.7.22
2020-01-28 0.7.21
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-24 1.0.1
2017-07-03 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-13 1.1.0
2019-01-18 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-28 0.1.3
2016-10-20 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-02-08 0.1.3
2021-05-31 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-18 1.0.4
2021-09-02 1.0.3
2021-07-11 1.0.2
2021-02-13 1.0.1
2021-01-22 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-02 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-18 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-15 2.0.5
2020-08-02 2.0.4
2020-04-07 2.0.2
2020-02-28 2.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-09 1.0.0
2020-09-22 0.2.2
2020-05-22 0.2.1
2020-01-10 0.2.0
2019-07-19 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-25 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-09 0.1.0
Title: Using Fonts More Easily in R Graphs
Description: Making it easy to use various types of fonts ('TrueType',
'OpenType', Type 1, web fonts, etc.) in R graphs, and supporting most output
formats of R graphics including PNG, PDF and SVG. Text glyphs will be converted
into polygons or raster images, hence after the plot has been created, it no
longer relies on the font files. No external software such as 'Ghostscript' is
needed to use this package.
Author: Yixuan Qiu [aut, cre],
Dave Raggett [ctb]
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between showtext versions 0.9-7 dated 2024-03-02 and 0.9-8 dated 2026-03-21
DESCRIPTION | 21 ++-- MD5 | 34 +++---- build/vignette.rds |binary inst/NEWS.Rd | 8 + inst/doc/introduction.Rmd | 2 inst/doc/introduction.html | 131 ++++++++++++++--------------- src/array.c | 38 ++++---- src/cairodev.c | 16 +-- src/cairodev.h | 33 ++++++- src/devfuns.c | 61 +++++++------ src/fonts.c | 201 +++++++++++++++++++++++++++++++++++---------- src/fonts.h | 2 src/outline.c | 54 ++++++------ src/raster.c | 76 ++++++++++------- src/showtext.c | 18 ++-- src/util.c | 8 + src/util.h | 1 vignettes/introduction.Rmd | 2 18 files changed, 451 insertions(+), 255 deletions(-)
Title: Visualizing Panel Data
Description: Visualizes panel data. It has three main functionalities: (1) it plots the treatment status and missing values in a panel dataset; (2) it visualizes the temporal dynamics of a main variable of interest; (3) it depicts the bivariate relationships between a treatment variable and an outcome variable either by unit or in aggregate. For details, see <doi:10.18637/jss.v107.i07>.
Author: Yiqing Xu [aut, cre] ,
Hongyu Mou [aut],
Licheng Liu [aut]
Maintainer: Yiqing Xu <yiqingxu@stanford.edu>
Diff between panelView versions 1.2.0 dated 2026-03-11 and 1.2.1 dated 2026-03-21
DESCRIPTION | 30 +++++++++++++++++------------- MD5 | 12 ++++++------ NAMESPACE | 2 +- R/panelView.R | 10 +++++----- R/plot-bivariate.R | 18 +++++++++--------- R/plot-outcome.R | 22 +++++++++++----------- R/plot-treat.R | 10 +++++----- 7 files changed, 54 insertions(+), 50 deletions(-)
Title: Graphical Multiple Comparison Procedures
Description: Multiple comparison procedures (MCPs) control the familywise error
rate in clinical trials. Graphical MCPs include many commonly used
procedures as special cases; see Bretz et al. (2011)
<doi:10.1002/bimj.201000239>, Lu (2016) <doi:10.1002/sim.6985>, and Xi et
al. (2017) <doi:10.1002/bimj.201600233>. This package is a low-dependency
implementation of graphical MCPs which allow mixed types of tests. It also
includes power simulations and visualization of graphical MCPs.
Author: Dong Xi [aut, cre],
Ethan Brockmann [aut],
Gilead Sciences, Inc. [cph, fnd]
Maintainer: Dong Xi <dong.xi1@gilead.com>
Diff between graphicalMCP versions 0.2.8 dated 2025-05-06 and 0.2.9 dated 2026-03-21
graphicalMCP-0.2.8/graphicalMCP/tests/testthat/Rplots.pdf |only graphicalMCP-0.2.9/graphicalMCP/DESCRIPTION | 8 +- graphicalMCP-0.2.9/graphicalMCP/MD5 | 19 ++--- graphicalMCP-0.2.9/graphicalMCP/NEWS.md | 5 + graphicalMCP-0.2.9/graphicalMCP/R/graph_test_closure.R | 11 ++ graphicalMCP-0.2.9/graphicalMCP/build/partial.rdb |binary graphicalMCP-0.2.9/graphicalMCP/inst/doc/closed-testing.html | 26 +++--- graphicalMCP-0.2.9/graphicalMCP/inst/doc/graph-examples.html | 38 +++++----- graphicalMCP-0.2.9/graphicalMCP/inst/doc/graphicalMCP.html | 14 +-- graphicalMCP-0.2.9/graphicalMCP/inst/doc/internal-validation.html | 14 +-- graphicalMCP-0.2.9/graphicalMCP/inst/doc/shortcut-testing.html | 26 +++--- 11 files changed, 85 insertions(+), 76 deletions(-)
Title: Utilities for Interacting with the 'Posit Connect' Server API
Description: Provides a helpful 'R6' class and methods for interacting with
the 'Posit Connect' Server API along with some meaningful utility functions
for regular tasks. API documentation varies by 'Posit Connect' installation
and version, but the latest documentation is also hosted publicly at
<https://docs.posit.co/connect/api/>.
Author: Kara Woo [aut, cre],
Toph Allen [aut],
Neal Richardson [aut],
Sean Lopp [aut],
Cole Arendt [aut],
Posit, PBC [cph, fnd]
Maintainer: Kara Woo <kara.woo@posit.co>
Diff between connectapi versions 0.11.0 dated 2026-02-25 and 0.11.1 dated 2026-03-21
DESCRIPTION | 6 ++--- MD5 | 22 ++++++++++----------- NEWS.md | 4 +++ R/get.R | 2 - R/parse.R | 8 +++++++ R/ptype.R | 2 - README.md | 3 -- inst/doc/customize-http.html | 4 +-- inst/doc/getting-started.html | 4 +-- man/get_usage.Rd | 2 - tests/testthat/test-get.R | 5 ++-- tests/testthat/test-parse.R | 43 ++++++++++++++++++++++++++++++++++++++++++ 12 files changed, 80 insertions(+), 25 deletions(-)
Title: Summarise and Visualise Characteristics of Patients in the OMOP
CDM
Description: Summarise and visualise the characteristics of patients in data
mapped to the Observational Medical Outcomes Partnership (OMOP) common data
model (CDM).
Author: Marti Catala [aut, cre] ,
Yuchen Guo [aut] ,
Mike Du [ctb] ,
Kim Lopez-Guell [aut] ,
Edward Burn [aut] ,
Nuria Mercade-Besora [aut] ,
Marta Alcalde [aut]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between CohortCharacteristics versions 1.1.1 dated 2026-01-28 and 1.1.2 dated 2026-03-21
DESCRIPTION | 6 MD5 | 244 NAMESPACE | 108 NEWS.md | 203 R/CohortCharacteristics-package.R | 56 R/benchmarkCohortCharacteristics.R | 528 R/checks.R | 252 R/documentationHelpers.R | 206 R/plot.R | 414 R/plotCharacteristics.R | 328 R/plotCohortAttrition.R | 840 - R/plotCohortCount.R | 158 R/plotCohortOverlap.R | 246 R/plotCohortTiming.R | 366 R/plotComparedLargeScaleCharacteristics.R | 318 R/plotLargeScaleCharacteristics.R | 154 R/reexports.R | 160 R/summariseCharacteristics.R | 1353 - R/summariseCohortAttrition.R | 246 R/summariseCohortCodelist.R | 350 R/summariseCohortCount.R | 112 R/summariseCohortOverlap.R | 508 R/summariseCohortTiming.R | 524 R/summariseLargeScaleCharacteristics.R | 1294 - R/table.R | 250 R/tableCharacteristics.R | 138 R/tableCohortAttrition.R | 120 R/tableCohortCount.R | 120 R/tableCohortOverlap.R | 136 R/tableCohortTiming.R | 180 R/tableLargeScaleCharacteristics.R | 532 R/utilities.R | 126 README.md | 624 build/vignette.rds |binary inst/WORDLIST | 124 inst/doc/summarise_characteristics.R | 322 inst/doc/summarise_characteristics.Rmd | 456 inst/doc/summarise_characteristics.html |12400 +++++++-------- inst/doc/summarise_cohort_overlap.R | 134 inst/doc/summarise_cohort_overlap.Rmd | 198 inst/doc/summarise_cohort_overlap.html | 3150 +-- inst/doc/summarise_cohort_timing.R | 164 inst/doc/summarise_cohort_timing.Rmd | 224 inst/doc/summarise_cohort_timing.html | 3184 +-- inst/doc/summarise_large_scale_characteristics.R | 134 inst/doc/summarise_large_scale_characteristics.Rmd | 224 inst/doc/summarise_large_scale_characteristics.html | 6179 +++---- man/CohortCharacteristics-package.Rd | 78 man/availablePlotColumns.Rd | 54 man/availableTableColumns.Rd | 58 man/benchmarkCohortCharacteristics.Rd | 86 man/cohortDoc.Rd | 24 man/cohortIdDoc.Rd | 26 man/figures/attrition.svg | 40 man/figures/lifecycle-archived.svg | 42 man/figures/lifecycle-defunct.svg | 42 man/figures/lifecycle-deprecated.svg | 42 man/figures/lifecycle-experimental.svg | 42 man/figures/lifecycle-maturing.svg | 42 man/figures/lifecycle-questioning.svg | 42 man/figures/lifecycle-soft-deprecated.svg | 42 man/figures/lifecycle-stable.svg | 58 man/figures/lifecycle-superseded.svg | 42 man/mockCohortCharacteristics.Rd | 90 man/plotCharacteristics.Rd | 176 man/plotCohortAttrition.Rd | 110 man/plotCohortCount.Rd | 126 man/plotCohortOverlap.Rd | 112 man/plotCohortTiming.Rd | 168 man/plotComparedLargeScaleCharacteristics.Rd | 148 man/plotDoc.Rd | 48 man/plotLargeScaleCharacteristics.Rd | 128 man/reexports.Rd | 50 man/resultDoc.Rd | 24 man/strataDoc.Rd | 26 man/summariseCharacteristics.Rd | 268 man/summariseCohortAttrition.Rd | 64 man/summariseCohortCodelist.Rd | 84 man/summariseCohortCount.Rd | 70 man/summariseCohortOverlap.Rd | 84 man/summariseCohortTiming.Rd | 102 man/summariseLargeScaleCharacteristics.Rd | 164 man/tableCharacteristics.Rd | 146 man/tableCohortAttrition.Rd | 146 man/tableCohortCodelist.Rd | 80 man/tableCohortCount.Rd | 146 man/tableCohortOverlap.Rd | 154 man/tableCohortTiming.Rd | 178 man/tableDoc.Rd | 90 man/tableLargeScaleCharacteristics.Rd | 138 man/tableTopLargeScaleCharacteristics.Rd | 146 man/timeScaleDoc.Rd | 24 man/uniqueCombinationsDoc.Rd | 26 tests/manual/test-sqltest.R | 188 tests/spelling.R | 10 tests/testthat.R | 24 tests/testthat/setup.R | 118 tests/testthat/test-benchmarkCohortCharacteristics.R | 44 tests/testthat/test-plotCharacteristics.R | 472 tests/testthat/test-plotCohortAttrition.R | 82 tests/testthat/test-plotCohortCount.R | 50 tests/testthat/test-plotCohortOverlap.R | 214 tests/testthat/test-plotCohortTiming.R | 508 tests/testthat/test-plotLargeScaleCharacteristics.R | 328 tests/testthat/test-summariseCharacteristics.R | 3406 ++-- tests/testthat/test-summariseCohortAttrition.R | 60 tests/testthat/test-summariseCohortCodelist.R | 130 tests/testthat/test-summariseCohortCount.R | 52 tests/testthat/test-summariseCohortOverlap.R | 594 tests/testthat/test-summariseCohortTiming.R | 320 tests/testthat/test-summariseLargeScaleCharacteristics.R | 930 - tests/testthat/test-table.R | 18 tests/testthat/test-tableCharacteristics.R | 258 tests/testthat/test-tableCohortAttrition.R | 24 tests/testthat/test-tableCohortCount.R | 32 tests/testthat/test-tableCohortOverlap.R | 152 tests/testthat/test-tableCohortTiming.R | 226 tests/testthat/test-tableLargeScaleCharacteristics.R | 380 tests/testthat/test-utilities.R | 52 vignettes/summarise_characteristics.Rmd | 456 vignettes/summarise_cohort_overlap.Rmd | 198 vignettes/summarise_cohort_timing.Rmd | 224 vignettes/summarise_large_scale_characteristics.Rmd | 224 123 files changed, 25976 insertions(+), 25967 deletions(-)
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