Title: Nonlinear Time Series Analysis
Description: Functions for nonlinear time series analysis. This package permits
the computation of the most-used nonlinear statistics/algorithms
including generalized correlation dimension, information dimension,
largest Lyapunov exponent, sample entropy and Recurrence
Quantification Analysis (RQA), among others. Basic routines
for surrogate data testing are also included. Part of this work
was based on the book "Nonlinear time series analysis" by
Holger Kantz and Thomas Schreiber (ISBN: 9780521529020).
Author: Constantino A. Garcia [aut, cre],
Gunther Sawitzki [ctb]
Maintainer: Constantino A. Garcia <constantino.garciama@ceu.es>
Diff between nonlinearTseries versions 0.3.1 dated 2024-09-23 and 0.3.2 dated 2026-03-23
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/nonlinearTseries_quickstart.html | 19 ++++++++++--------- src/ANN.cpp | 4 ++-- tests/testthat/test_neighbour_search.R | 22 ++++++++++++++++++++++ 6 files changed, 44 insertions(+), 21 deletions(-)
More information about nonlinearTseries at CRAN
Permanent link
Title: Data Wrangling for Antimicrobial Resistance Studies
Description: Designed for analyzing the Medical Information Mart for Intensive Care(MIMIC) dataset,
a repository of freely accessible electronic health records. MIMER(MIMIC-enabled Research) package, offers
a suite of data wrangling functions tailored specifically for preparing the dataset for research purposes,
particularly in antimicrobial resistance(AMR) studies. It simplifies complex data manipulation tasks, allowing
researchers to focus on their primary inquiries without being bogged down by wrangling complexities.
Author: Anoop Velluva [aut] ,
Alessandro Gerada [cre, ctb] ,
Alexander Howard [ctb]
Maintainer: Alessandro Gerada <alessandro.gerada@liverpool.ac.uk>
Diff between MIMER versions 1.0.5 dated 2026-02-28 and 1.0.6 dated 2026-03-23
DESCRIPTION | 17 ++++++++--------- MD5 | 4 ++-- NEWS.md | 2 ++ 3 files changed, 12 insertions(+), 11 deletions(-)
Title: DRESS - A Continuous Framework for Structural Graph Refinement
Description: DRESS is a deterministic, parameter-free framework that
iteratively refines the structural similarity of edges in a graph to
produce a canonical fingerprint: a real-valued edge vector, obtained by
converging a non-linear dynamical system to its unique fixed point. The
fingerprint is isomorphism-invariant by construction, guaranteed
bitwise-equal across any vertex labeling, numerically stable
(no overflow, no error amplification, no undefined behavior), fast and embarrassingly parallel to compute:
DRESS total runtime is O(I * m * d_max) for I iterations to convergence,
and convergence is guaranteed by Birkhoff contraction.
Author: Eduar Castrillo Velilla [aut, cre]
Maintainer: Eduar Castrillo Velilla <velicast@outlook.com>
Diff between dress.graph versions 0.1.2 dated 2026-02-25 and 0.6.2 dated 2026-03-23
dress.graph-0.1.2/dress.graph/src/Makevars |only dress.graph-0.6.2/dress.graph/DESCRIPTION | 34 +- dress.graph-0.6.2/dress.graph/MD5 | 37 +- dress.graph-0.6.2/dress.graph/NAMESPACE | 4 dress.graph-0.6.2/dress.graph/R/cuda.R |only dress.graph-0.6.2/dress.graph/R/dress.R | 186 +++++++++++ dress.graph-0.6.2/dress.graph/R/mpi.R |only dress.graph-0.6.2/dress.graph/README.md |only dress.graph-0.6.2/dress.graph/configure |only dress.graph-0.6.2/dress.graph/inst |only dress.graph-0.6.2/dress.graph/man/DRESS.Rd |only dress.graph-0.6.2/dress.graph/man/cuda.Rd |only dress.graph-0.6.2/dress.graph/man/delta_dress_fit.Rd |only dress.graph-0.6.2/dress.graph/man/mpi.Rd |only dress.graph-0.6.2/dress.graph/src/Makevars.in |only dress.graph-0.6.2/dress.graph/src/Makevars.win |only dress.graph-0.6.2/dress.graph/src/delta_dress.c |only dress.graph-0.6.2/dress.graph/src/delta_dress_cuda.c |only dress.graph-0.6.2/dress.graph/src/delta_dress_impl.c |only dress.graph-0.6.2/dress.graph/src/delta_dress_impl.h |only dress.graph-0.6.2/dress.graph/src/dress.c | 226 +++++++++++-- dress.graph-0.6.2/dress.graph/src/dress/cuda |only dress.graph-0.6.2/dress.graph/src/dress/delta_dress.h |only dress.graph-0.6.2/dress.graph/src/dress/dress.h | 98 +++++ dress.graph-0.6.2/dress.graph/src/dress/mpi |only dress.graph-0.6.2/dress.graph/src/dress_cuda.cu |only dress.graph-0.6.2/dress.graph/src/dress_cuda_r.c |only dress.graph-0.6.2/dress.graph/src/dress_mpi.c |only dress.graph-0.6.2/dress.graph/src/dress_mpi_r.c |only dress.graph-0.6.2/dress.graph/src/dress_r.c | 299 +++++++++++++++++- 30 files changed, 827 insertions(+), 57 deletions(-)
Title: Access Data from the 'Kolada' Database
Description: Methods for downloading and processing data and metadata from 'Kolada', the official Swedish regions and municipalities database <https://www.kolada.se/>.
Author: Love Hansson [aut, cre, cph]
Maintainer: Love Hansson <love.hansson@gmail.com>
Diff between rKolada versions 0.3.0 dated 2026-03-04 and 0.3.1 dated 2026-03-23
rKolada-0.3.0/rKolada/man/pipe.Rd |only rKolada-0.3.0/rKolada/tests/testthat/test_api.R |only rKolada-0.3.1/rKolada/DESCRIPTION | 10 rKolada-0.3.1/rKolada/MD5 | 106 +- rKolada-0.3.1/rKolada/NAMESPACE | 4 rKolada-0.3.1/rKolada/NEWS.md | 28 rKolada-0.3.1/rKolada/R/aaa_utils.R | 89 ++ rKolada-0.3.1/rKolada/R/available.R | 47 - rKolada-0.3.1/rKolada/R/data.R | 118 +-- rKolada-0.3.1/rKolada/R/glue.R | 131 +-- rKolada-0.3.1/rKolada/R/higher_order_metadata.R | 49 - rKolada-0.3.1/rKolada/R/kpi.R | 72 - rKolada-0.3.1/rKolada/R/kpi_groups.R | 54 - rKolada-0.3.1/rKolada/R/metadata.R | 112 +-- rKolada-0.3.1/rKolada/R/municipality.R | 56 - rKolada-0.3.1/rKolada/R/municipality_grp.R | 53 - rKolada-0.3.1/rKolada/R/ou.R | 12 rKolada-0.3.1/rKolada/R/rKolada.R | 17 rKolada-0.3.1/rKolada/R/sysdata.rda |binary rKolada-0.3.1/rKolada/R/table_specs.R | 10 rKolada-0.3.1/rKolada/README.md | 4 rKolada-0.3.1/rKolada/build/vignette.rds |binary rKolada-0.3.1/rKolada/inst/doc/a-quickstart-rkolada.R | 25 rKolada-0.3.1/rKolada/inst/doc/a-quickstart-rkolada.Rmd | 61 + rKolada-0.3.1/rKolada/inst/doc/a-quickstart-rkolada.html | 133 ++- rKolada-0.3.1/rKolada/inst/doc/introduction-to-rkolada.R | 60 - rKolada-0.3.1/rKolada/inst/doc/introduction-to-rkolada.Rmd | 108 +- rKolada-0.3.1/rKolada/inst/doc/introduction-to-rkolada.html | 440 ++++++------ rKolada-0.3.1/rKolada/man/allowed_entities.Rd | 2 rKolada-0.3.1/rKolada/man/compose_data_query.Rd | 2 rKolada-0.3.1/rKolada/man/compose_metadata_query.Rd | 4 rKolada-0.3.1/rKolada/man/generate_kpi_metadata.Rd | 1 rKolada-0.3.1/rKolada/man/get_kpi.Rd | 10 rKolada-0.3.1/rKolada/man/get_metadata.Rd | 14 rKolada-0.3.1/rKolada/man/get_values.Rd | 2 rKolada-0.3.1/rKolada/man/kolada_available.Rd | 7 rKolada-0.3.1/rKolada/man/kolada_cache_dir.Rd |only rKolada-0.3.1/rKolada/man/kolada_clear_cache.Rd |only rKolada-0.3.1/rKolada/man/kpi_bind_keywords.Rd | 4 rKolada-0.3.1/rKolada/man/kpi_extract_ids.Rd | 6 rKolada-0.3.1/rKolada/man/kpi_grp_extract_ids.Rd | 2 rKolada-0.3.1/rKolada/man/kpi_grp_search.Rd | 8 rKolada-0.3.1/rKolada/man/kpi_grp_unnest.Rd | 10 rKolada-0.3.1/rKolada/man/kpi_minimize.Rd | 2 rKolada-0.3.1/rKolada/man/kpi_search.Rd | 8 rKolada-0.3.1/rKolada/man/municipality_extract_ids.Rd | 4 rKolada-0.3.1/rKolada/man/municipality_grp_extract_ids.Rd | 2 rKolada-0.3.1/rKolada/man/municipality_grp_unnest.Rd | 10 rKolada-0.3.1/rKolada/man/municipality_id_to_name.Rd | 8 rKolada-0.3.1/rKolada/man/municipality_name_to_id.Rd | 10 rKolada-0.3.1/rKolada/man/municipality_search.Rd | 4 rKolada-0.3.1/rKolada/man/ou_search.Rd | 6 rKolada-0.3.1/rKolada/man/values_legend.Rd | 4 rKolada-0.3.1/rKolada/man/values_minimize.Rd | 4 rKolada-0.3.1/rKolada/vignettes/a-quickstart-rkolada.Rmd | 61 + rKolada-0.3.1/rKolada/vignettes/introduction-to-rkolada.Rmd | 108 +- 56 files changed, 1161 insertions(+), 941 deletions(-)
Title: Rocket-Fast Clinical Research Reporting
Description: Description of the tables, both grouped and not grouped, with some associated data management actions,
such as sorting the terms of the variables and deleting terms with zero numbers.
Author: USMR CHU de Bordeaux [aut, cre],
Valentine Renaudeau [aut],
Marion Kret [aut],
Matisse Decilap [aut],
Sahardid Mohamed Houssein [aut],
Thomas Ferte [aut]
Maintainer: USMR CHU de Bordeaux <astreinte.usmr@chu-bordeaux.fr>
Diff between RastaRocket versions 1.1.2 dated 2026-02-26 and 1.1.3 dated 2026-03-23
DESCRIPTION | 11 MD5 | 40 - NAMESPACE | 1 NEWS.md | 18 R/base_table.R | 6 R/desc_ei_per_grade.R | 54 + R/desc_ei_per_pt.R | 33 R/desc_var_function.R | 28 R/df_builder_ae.R | 10 R/prepare_table.R | 26 inst/doc/DescribeAE.html | 480 ++++++------ inst/doc/RastaRocketVignette.R | 46 - inst/doc/RastaRocketVignette.Rmd | 55 - inst/doc/RastaRocketVignette.html | 1440 +++++++++++++++++++++++++------------- inst/doc/SetupProject.html | 4 man/base_table.Rd | 5 man/desc_ei_per_grade.Rd | 5 man/desc_ei_per_grade_df_to_gt.Rd | 4 man/desc_var.Rd | 25 man/prepare_table.Rd | 3 vignettes/RastaRocketVignette.Rmd | 55 - 21 files changed, 1468 insertions(+), 881 deletions(-)
Title: Models for Non Linear Causality Detection in Time Series
Description: Models for non-linear time series analysis and causality detection. The main functionalities of this package consist of an implementation of the classical causality test (C.W.J.Granger 1980) <doi:10.1016/0165-1889(80)90069-X>, and a non-linear version of it based on feed-forward neural networks. This package contains also an implementation of the Transfer Entropy <doi:10.1103/PhysRevLett.85.461>, and the continuous Transfer Entropy using an approximation based on the k-nearest neighbors <doi:10.1103/PhysRevE.69.066138>. There are also some other useful tools, like the VARNN (Vector Auto-Regressive Neural Network) prediction model, the Augmented test of stationarity, and the discrete and continuous entropy and mutual information.
Author: Youssef Hmamouche [aut, cre]
Maintainer: Youssef Hmamouche <hmamoucheyussef@gmail.com>
Diff between NlinTS versions 1.4.6 dated 2025-12-16 and 1.4.7 dated 2026-03-23
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- R/modules.R | 42 +++++++++++++++++++++--------------------- build/partial.rdb |binary man/entropy_cont.Rd | 4 ++-- man/entropy_disc.Rd | 2 +- man/mi_cont.Rd | 2 +- man/mi_disc.Rd | 2 +- man/mi_disc_bi.Rd | 2 +- man/nlin_causality.test.Rd | 6 +++--- man/te_cont.Rd | 4 ++-- man/te_disc.Rd | 8 ++++---- man/varmlp.Rd | 12 ++++++------ src/nsEntropy.cpp | 23 +++++++++++------------ 14 files changed, 70 insertions(+), 71 deletions(-)
More information about MultiResponseR at CRAN
Permanent link
Title: Correlation-Based and Model-Based Predictor Pruning
Description: Provides functions for predictor pruning using association-based and model-based approaches. Includes corrPrune() for fast correlation-based pruning, modelPrune() for VIF-based regression pruning, and exact graph-theoretic algorithms (Eppstein–Löffler–Strash, Bron–Kerbosch) for exhaustive subset enumeration. Supports linear models, GLMs, and mixed models ('lme4', 'glmmTMB').
Author: Gilles Colling [aut, cre, cph]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between corrselect versions 3.1.0 dated 2026-01-08 and 3.2.1 dated 2026-03-23
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corrselect-3.2.1/corrselect/MD5 | 223 corrselect-3.2.1/corrselect/NAMESPACE | 13 corrselect-3.2.1/corrselect/NEWS.md | 18 corrselect-3.2.1/corrselect/R/CorrCombo.R | 427 - corrselect-3.2.1/corrselect/R/MatSelect.R | 9 corrselect-3.2.1/corrselect/R/assocSelect.R | 5 corrselect-3.2.1/corrselect/R/corrSelect.R | 3 corrselect-3.2.1/corrselect/R/corrSubset.R | 12 corrselect-3.2.1/corrselect/R/corrselect-package.R | 2 corrselect-3.2.1/corrselect/R/zzz.R |only corrselect-3.2.1/corrselect/README.md | 32 corrselect-3.2.1/corrselect/inst/doc/advanced.Rmd | 60 corrselect-3.2.1/corrselect/inst/doc/advanced.html | 350 corrselect-3.2.1/corrselect/inst/doc/comparison.R | 140 corrselect-3.2.1/corrselect/inst/doc/comparison.Rmd | 1211 +-- corrselect-3.2.1/corrselect/inst/doc/comparison.html | 209 corrselect-3.2.1/corrselect/inst/doc/quickstart.Rmd | 29 corrselect-3.2.1/corrselect/inst/doc/quickstart.html | 199 corrselect-3.2.1/corrselect/inst/doc/theory.Rmd | 3112 ++++--- corrselect-3.2.1/corrselect/inst/doc/theory.html | 772 - corrselect-3.2.1/corrselect/inst/doc/workflows.Rmd | 1771 ++-- corrselect-3.2.1/corrselect/inst/doc/workflows.html | 224 corrselect-3.2.1/corrselect/man/CorrCombo.Rd | 84 corrselect-3.2.1/corrselect/man/assocSelect.Rd | 2 corrselect-3.2.1/corrselect/man/corrSubset.Rd | 6 corrselect-3.2.1/corrselect/man/corrselect-package.Rd | 4 corrselect-3.2.1/corrselect/tests/testthat/test-CorrCombo.R | 990 +- corrselect-3.2.1/corrselect/tests/testthat/test-assocSelect.R | 2644 +++--- corrselect-3.2.1/corrselect/tests/testthat/test-corrMatSelect-bron-kerbosch.R | 12 corrselect-3.2.1/corrselect/tests/testthat/test-corrMatSelect-els.R | 16 corrselect-3.2.1/corrselect/tests/testthat/test-corrPrune.R | 3240 ++++---- corrselect-3.2.1/corrselect/tests/testthat/test-corrSelect.R | 1906 ++-- corrselect-3.2.1/corrselect/tests/testthat/test-corrSubset.R | 360 corrselect-3.2.1/corrselect/tests/testthat/test-modelPrune.R | 3910 +++++----- 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Title: Template Model Builder: A General Random Effect Tool Inspired by
'ADMB'
Description: With this tool, a user should be able to quickly implement
complex random effect models through simple C++ templates. The package combines
'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector
library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain
an efficient implementation of the applied Laplace approximation with exact
derivatives. Key features are: Automatic sparseness detection, parallelism
through 'BLAS' and parallel user templates.
Author: Kasper Kristensen [aut, cre, cph],
Brad Bell [cph],
Hans Skaug [ctb],
Arni Magnusson [ctb],
Casper Berg [ctb],
Anders Nielsen [ctb],
Martin Maechler [ctb],
Theo Michelot [ctb],
Mollie Brooks [ctb],
Alex Forrence [ctb],
Christoffer Moesgaard Albertsen [...truncated...]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between TMB versions 1.9.20 dated 2026-03-17 and 1.9.21 dated 2026-03-23
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NEWS | 9 +++++++++ R/TMB.R | 2 ++ R/sdreport.R | 4 ++-- R/validation.R | 2 +- R/zzz.R | 5 ----- man/FreeADFun.Rd | 2 ++ man/oneStepPredict.Rd | 2 +- man/sdreport.Rd | 4 ++-- 10 files changed, 33 insertions(+), 25 deletions(-)
Title: Descriptive Statistics and Data Management Tools
Description: Provides tools for descriptive data analysis,
variable inspection, and quick tabulation workflows in 'R'. Summarizes
variable metadata, labels, classes, missing values, and representative
values, with support for readable frequency tables, cross-tabulations,
association measures for contingency tables (Cramer's V, Phi,
Goodman-Kruskal Gamma, Kendall's Tau-b, Somers' D, and others),
and APA-style reporting tables. Includes helpers for interactive
codebooks, variable label extraction, clipboard export, and row-wise
descriptive summaries. Designed to make descriptive analysis faster,
clearer, and easier to work with in practice.
Author: Amal Tawfik [aut, cre, cph]
Maintainer: Amal Tawfik <amal.tawfik@hesav.ch>
Diff between spicy versions 0.5.0 dated 2026-03-14 and 0.6.0 dated 2026-03-23
spicy-0.5.0/spicy/R/cramer_v.R |only spicy-0.6.0/spicy/DESCRIPTION | 18 spicy-0.6.0/spicy/MD5 | 113 +-- spicy-0.6.0/spicy/NAMESPACE | 15 spicy-0.6.0/spicy/NEWS.md | 40 + spicy-0.6.0/spicy/R/assoc.R |only spicy-0.6.0/spicy/R/code_book.R | 5 spicy-0.6.0/spicy/R/copy_clipboard.R | 13 spicy-0.6.0/spicy/R/count_n.R | 63 + spicy-0.6.0/spicy/R/cross_tab.R | 440 ++++++------ spicy-0.6.0/spicy/R/data.R |only spicy-0.6.0/spicy/R/freq.R | 74 +- spicy-0.6.0/spicy/R/freq_print.R | 12 spicy-0.6.0/spicy/R/globals.R | 3 spicy-0.6.0/spicy/R/label_from_names.R | 3 spicy-0.6.0/spicy/R/mean_n.R | 30 spicy-0.6.0/spicy/R/spicy-package.R | 1 spicy-0.6.0/spicy/R/sum_n.R | 30 spicy-0.6.0/spicy/R/table_apa.R | 543 ++++++++++++--- spicy-0.6.0/spicy/R/tables_ascii.R | 2 spicy-0.6.0/spicy/R/varlist.R | 58 - spicy-0.6.0/spicy/README.md | 439 ++++-------- spicy-0.6.0/spicy/build |only spicy-0.6.0/spicy/data |only spicy-0.6.0/spicy/inst/doc |only spicy-0.6.0/spicy/man/assoc_measures.Rd |only spicy-0.6.0/spicy/man/build_ascii_table.Rd | 2 spicy-0.6.0/spicy/man/code_book.Rd | 5 spicy-0.6.0/spicy/man/contingency_coef.Rd |only spicy-0.6.0/spicy/man/copy_clipboard.Rd | 8 spicy-0.6.0/spicy/man/cramer_v.Rd | 74 +- spicy-0.6.0/spicy/man/cross_tab.Rd | 48 - spicy-0.6.0/spicy/man/figures/animation_varlist.gif |only spicy-0.6.0/spicy/man/freq.Rd | 6 spicy-0.6.0/spicy/man/gamma_gk.Rd |only spicy-0.6.0/spicy/man/goodman_kruskal_tau.Rd |only spicy-0.6.0/spicy/man/kendall_tau_b.Rd |only spicy-0.6.0/spicy/man/kendall_tau_c.Rd |only spicy-0.6.0/spicy/man/lambda_gk.Rd |only spicy-0.6.0/spicy/man/phi.Rd |only spicy-0.6.0/spicy/man/print.spicy_assoc_detail.Rd |only spicy-0.6.0/spicy/man/print.spicy_assoc_table.Rd |only spicy-0.6.0/spicy/man/print.spicy_freq_table.Rd | 2 spicy-0.6.0/spicy/man/sochealth.Rd |only spicy-0.6.0/spicy/man/somers_d.Rd |only spicy-0.6.0/spicy/man/spicy-package.Rd | 2 spicy-0.6.0/spicy/man/table_apa.Rd | 86 +- spicy-0.6.0/spicy/man/uncertainty_coef.Rd |only spicy-0.6.0/spicy/man/varlist.Rd | 24 spicy-0.6.0/spicy/man/yule_q.Rd |only spicy-0.6.0/spicy/tests/testthat/test-assoc.R |only spicy-0.6.0/spicy/tests/testthat/test-code_book.R | 47 + spicy-0.6.0/spicy/tests/testthat/test-count_n.R | 38 + spicy-0.6.0/spicy/tests/testthat/test-cramer_v.R | 29 spicy-0.6.0/spicy/tests/testthat/test-cross_tab.R | 404 +++++++++++ spicy-0.6.0/spicy/tests/testthat/test-freq.R | 156 ++++ spicy-0.6.0/spicy/tests/testthat/test-freq_print.R | 8 spicy-0.6.0/spicy/tests/testthat/test-label_from_names.R | 8 spicy-0.6.0/spicy/tests/testthat/test-mean_n.R | 44 + spicy-0.6.0/spicy/tests/testthat/test-sum_n.R | 44 + spicy-0.6.0/spicy/tests/testthat/test-table_apa.R | 525 ++++++++++++++ spicy-0.6.0/spicy/tests/testthat/test-tables_ascii.R | 12 spicy-0.6.0/spicy/tests/testthat/test-varlist.R | 205 +++++ spicy-0.6.0/spicy/vignettes |only 64 files changed, 2855 insertions(+), 824 deletions(-)
Title: Geometrical Functionality of the 'spatstat' Family
Description: Defines spatial data types and supports geometrical operations
on them. Data types include point patterns, windows (domains),
pixel images, line segment patterns, tessellations and hyperframes.
Capabilities include creation and manipulation of data
(using command line or graphical interaction),
plotting, geometrical operations (rotation, shift, rescale,
affine transformation), convex hull, discretisation and
pixellation, Dirichlet tessellation, Delaunay triangulation,
pairwise distances, nearest-neighbour distances,
distance transform, morphological operations
(erosion, dilation, closing, opening), quadrat counting,
geometrical measurement, geometrical covariance,
colour maps, calculus on spatial domains,
Gaussian blur, level sets of images, transects of images,
intersections between objects, minimum distance matching.
(Excludes spatial data on a network, which are supported by
the package 'spatstat.linnet'.)
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Warick Brown [ctb],
Tilman Davies [ctb],
Ute Hahn [ctb],
Martin Hazelton [ctb],
Abdollah Jalilian [ctb],
Greg McSwiggan [ctb, cph],
Sebastian Meyer [ctb, cph],
Jens Oeh [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.geom versions 3.7-2 dated 2026-03-21 and 3.7-3 dated 2026-03-23
DESCRIPTION | 8 +++---- MD5 | 12 +++++------ NEWS | 16 +++++++++++++++ inst/doc/packagesizes.txt | 2 - inst/info/packagesizes.txt | 2 - src/exactdist.c | 6 ++--- tests/testsNtoO.R | 47 +++++++++++++++++++++++++++++++++------------ 7 files changed, 66 insertions(+), 27 deletions(-)
Title: Election Vote Counting with Safety Features
Description: Fork of 'vote_2.3-2', Raftery et al. (2021)
<DOI:10.32614/RJ-2021-086>, with additional support
for stochastic experimentation.
Author: Clark Thomborson [cre, aut]
Maintainer: Clark Thomborson <c.thomborson@auckland.ac.nz>
Diff between SafeVote versions 1.0.1 dated 2024-10-05 and 1.0.2 dated 2026-03-23
SafeVote-1.0.1/SafeVote/NEWS.md |only SafeVote-1.0.1/SafeVote/man/view.Rd |only SafeVote-1.0.2/SafeVote/ChangeLog |only SafeVote-1.0.2/SafeVote/DESCRIPTION | 16 SafeVote-1.0.2/SafeVote/MD5 | 110 +++-- SafeVote-1.0.2/SafeVote/NAMESPACE | 106 ++--- SafeVote-1.0.2/SafeVote/R/check_votes.R | 22 + SafeVote-1.0.2/SafeVote/R/condorcet.R | 2 SafeVote-1.0.2/SafeVote/R/data.R | 156 ++++---- SafeVote-1.0.2/SafeVote/R/saferank.R | 34 - SafeVote-1.0.2/SafeVote/R/stv.R | 92 ++-- SafeVote-1.0.2/SafeVote/R/vote_by_sum.R | 2 SafeVote-1.0.2/SafeVote/README.md | 146 +++++-- SafeVote-1.0.2/SafeVote/build/partial.rdb |binary SafeVote-1.0.2/SafeVote/data/auckland2022.rda |only SafeVote-1.0.2/SafeVote/data/dublin_west_vote_count.rda |only SafeVote-1.0.2/SafeVote/data/dublin_west_vote_count_3seats.rda |only SafeVote-1.0.2/SafeVote/data/gisborne2022.rda |only SafeVote-1.0.2/SafeVote/data/gisborne2022analysis.rda |only SafeVote-1.0.2/SafeVote/data/hamilton2022.rda |only SafeVote-1.0.2/SafeVote/data/hamilton2022analysis.rda |only SafeVote-1.0.2/SafeVote/data/wellington2022analysis.rda |only SafeVote-1.0.2/SafeVote/man/SafeVote-package.Rd | 1 SafeVote-1.0.2/SafeVote/man/a3_hil.Rd | 60 +-- SafeVote-1.0.2/SafeVote/man/a4_hil.Rd | 52 +- SafeVote-1.0.2/SafeVote/man/a53_hil.Rd | 2 SafeVote-1.0.2/SafeVote/man/as.SafeRankExpt.Rd | 34 - SafeVote-1.0.2/SafeVote/man/auckland2022.Rd |only SafeVote-1.0.2/SafeVote/man/dublin_west.Rd | 2 SafeVote-1.0.2/SafeVote/man/dublin_west_vote_count.Rd |only SafeVote-1.0.2/SafeVote/man/dublin_west_vote_count_3seats.Rd |only SafeVote-1.0.2/SafeVote/man/extractMargins.Rd | 50 +- SafeVote-1.0.2/SafeVote/man/figures/README-yaleHare-1.png |only SafeVote-1.0.2/SafeVote/man/figures/README-yaleHare-2.png |only SafeVote-1.0.2/SafeVote/man/food_election.Rd | 2 SafeVote-1.0.2/SafeVote/man/gisborne2022.Rd |only SafeVote-1.0.2/SafeVote/man/gisborne2022analysis.Rd |only SafeVote-1.0.2/SafeVote/man/hamilton2022.Rd |only SafeVote-1.0.2/SafeVote/man/hamilton2022analysis.Rd |only SafeVote-1.0.2/SafeVote/man/ims_approval.Rd | 2 SafeVote-1.0.2/SafeVote/man/ims_election.Rd | 2 SafeVote-1.0.2/SafeVote/man/ims_plurality.Rd | 2 SafeVote-1.0.2/SafeVote/man/ims_score.Rd | 2 SafeVote-1.0.2/SafeVote/man/ims_stv.Rd | 2 SafeVote-1.0.2/SafeVote/man/invalid.votes.Rd | 40 +- SafeVote-1.0.2/SafeVote/man/is.SafeRankExpt.Rd | 34 - SafeVote-1.0.2/SafeVote/man/new_SafeRankExpt.Rd | 99 ++--- SafeVote-1.0.2/SafeVote/man/plot.SafeRankExpt.Rd | 190 +++++----- SafeVote-1.0.2/SafeVote/man/print.summary.SafeRankExpt.Rd | 38 +- SafeVote-1.0.2/SafeVote/man/rbind_SafeRankExpt.Rd | 4 SafeVote-1.0.2/SafeVote/man/readHil.Rd | 64 +-- SafeVote-1.0.2/SafeVote/man/stv.Rd | 9 SafeVote-1.0.2/SafeVote/man/summary.SafeRankExpt.Rd | 38 +- SafeVote-1.0.2/SafeVote/man/testAdditions.Rd | 12 SafeVote-1.0.2/SafeVote/man/testDeletions.Rd | 7 SafeVote-1.0.2/SafeVote/man/testFraction.Rd | 6 SafeVote-1.0.2/SafeVote/man/uk_labour_2010.Rd | 40 +- SafeVote-1.0.2/SafeVote/man/view.SafeVote.Rd |only SafeVote-1.0.2/SafeVote/man/view.SafeVote.approval.Rd | 34 - SafeVote-1.0.2/SafeVote/man/view.SafeVote.condorcet.Rd | 38 +- SafeVote-1.0.2/SafeVote/man/view.SafeVote.plurality.Rd | 34 - SafeVote-1.0.2/SafeVote/man/view.SafeVote.score.Rd | 2 SafeVote-1.0.2/SafeVote/man/view.SafeVote.stv.Rd | 38 +- SafeVote-1.0.2/SafeVote/man/wellington2022analysis.Rd |only SafeVote-1.0.2/SafeVote/man/yale_ballots.Rd | 40 +- SafeVote-1.0.2/SafeVote/tests/testthat.R | 24 - SafeVote-1.0.2/SafeVote/tests/testthat/test-stv-regress.R | 23 - 67 files changed, 922 insertions(+), 791 deletions(-)
Title: Graphic Devices Based on AGG
Description: Anti-Grain Geometry (AGG) is a high-quality and
high-performance 2D drawing library. The 'ragg' package provides a set
of graphic devices based on AGG to use as alternative to the raster
devices provided through the 'grDevices' package.
Author: Thomas Lin Pedersen [cre, aut] ,
Maxim Shemanarev [aut, cph] ,
Tony Juricic [ctb, cph] ,
Milan Marusinec [ctb, cph] ,
Spencer Garrett [ctb] ,
Posit Software, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between ragg versions 1.5.1 dated 2026-03-06 and 1.5.2 dated 2026-03-23
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ src/AggDevice.h | 1 + src/record_dev.cpp | 5 ----- 5 files changed, 12 insertions(+), 12 deletions(-)
Title: Creation of Mock Observational Medical Outcomes Partnership
Common Data Model
Description: Creates mock data for testing and package development for the
Observational Medical Outcomes Partnership common data model. The
package offers functions crafted with pipeline-friendly
implementation, enabling users to effortlessly include only the
necessary tables for their testing needs.
Author: Mike Du [aut, cre] ,
Marti Catala [aut] ,
Edward Burn [aut] ,
Nuria Mercade-Besora [aut] ,
Xihang Chen [aut]
Maintainer: Mike Du <mike.du@ndorms.ox.ac.uk>
Diff between omock versions 0.6.1 dated 2026-02-03 and 0.6.2 dated 2026-03-23
DESCRIPTION | 6 MD5 | 46 ++-- NEWS.md | 118 ++++++----- R/mockDatasets.R | 5 README.md | 12 - build/vignette.rds |binary data/mockDatasets.rda |binary inst/doc/mock_from_tables.html | 49 ++-- inst/doc/synthetic_clinical_tables.Rmd | 2 inst/doc/synthetic_clinical_tables.html | 23 +- inst/doc/synthetic_cohorts.Rmd | 2 inst/doc/synthetic_cohorts.html | 9 inst/doc/synthetic_datasets.Rmd | 2 inst/doc/synthetic_datasets.html | 180 +++++++++--------- inst/doc/synthetic_vocabulary.Rmd | 2 inst/doc/synthetic_vocabulary.html | 10 - vignettes/a01_Creating_synthetic_clinical_tables.R |only vignettes/a01_Creating_synthetic_clinical_tables.html |only vignettes/a02_Creating_synthetic_cohorts.R |only vignettes/a02_Creating_synthetic_cohorts.html |only vignettes/a03_Creating_a_synthetic_vocabulary.R |only vignettes/a03_Creating_a_synthetic_vocabulary.html |only vignettes/a04_Building_a_bespoke_mock_cdm.R |only vignettes/a04_Building_a_bespoke_mock_cdm.html |only vignettes/synthetic_clinical_tables.Rmd | 2 vignettes/synthetic_cohorts.Rmd | 2 vignettes/synthetic_datasets.Rmd | 2 vignettes/synthetic_vocabulary.Rmd | 2 28 files changed, 251 insertions(+), 223 deletions(-)
Title: Synthesise and Correlate Likert Scale and Rating-Scale Data
Based on Summary Statistics
Description: Generate and correlate synthetic Likert and rating-scale
questionnaire responses with predefined means, standard deviations,
Cronbach's Alpha, Factor Loading table, coefficients, and other summary
statistics.
It can be used to simulate Likert data, construct multi-item scales,
generate correlation matrices, and create example survey datasets for
teaching statistics, psychometrics, and methodological research.
Worked examples and documentation are available in the package
articles, accessible via the package website,
<https://winzarh.github.io/LikertMakeR/>.
Author: Hume Winzar [cre, aut]
Maintainer: Hume Winzar <winzar@gmail.com>
Diff between LikertMakeR versions 1.4.0 dated 2026-02-11 and 2.0.0 dated 2026-03-23
LikertMakeR-1.4.0/LikertMakeR/inst/doc/lfast_infographic.R |only LikertMakeR-1.4.0/LikertMakeR/inst/doc/lfast_infographic.Rmd |only LikertMakeR-1.4.0/LikertMakeR/inst/doc/lfast_infographic.html |only LikertMakeR-1.4.0/LikertMakeR/inst/pkgdown |only LikertMakeR-1.4.0/LikertMakeR/vignettes/img/lfast_infographic_t.png |only LikertMakeR-1.4.0/LikertMakeR/vignettes/lfast_infographic.Rmd |only LikertMakeR-2.0.0/LikertMakeR/.Rinstignore | 2 LikertMakeR-2.0.0/LikertMakeR/DESCRIPTION | 28 LikertMakeR-2.0.0/LikertMakeR/MD5 | 82 LikertMakeR-2.0.0/LikertMakeR/NAMESPACE | 7 LikertMakeR-2.0.0/LikertMakeR/NEWS.md | 107 LikertMakeR-2.0.0/LikertMakeR/R/alpha.R | 30 LikertMakeR-2.0.0/LikertMakeR/R/alpha_sensitivity.R |only LikertMakeR-2.0.0/LikertMakeR/R/correlateScales.R | 2 LikertMakeR-2.0.0/LikertMakeR/R/makeCorrAlpha.R | 656 - LikertMakeR-2.0.0/LikertMakeR/R/makeCorrLoadings.R | 6 LikertMakeR-2.0.0/LikertMakeR/R/makeItemsScale.R | 323 LikertMakeR-2.0.0/LikertMakeR/R/makePaired.R | 9 LikertMakeR-2.0.0/LikertMakeR/R/makeRepeated.R | 4 LikertMakeR-2.0.0/LikertMakeR/R/makeScales.R | 5 LikertMakeR-2.0.0/LikertMakeR/R/makeScalesRegression.R | 1141 +- LikertMakeR-2.0.0/LikertMakeR/R/reliability.R | 2 LikertMakeR-2.0.0/LikertMakeR/README.md | 26 LikertMakeR-2.0.0/LikertMakeR/build/vignette.rds |binary LikertMakeR-2.0.0/LikertMakeR/inst/WORDLIST | 217 LikertMakeR-2.0.0/LikertMakeR/inst/doc/LikertMakeR_vignette.R | 53 LikertMakeR-2.0.0/LikertMakeR/inst/doc/LikertMakeR_vignette.Rmd | 3914 ++++------ LikertMakeR-2.0.0/LikertMakeR/inst/doc/LikertMakeR_vignette.html | 2598 ++---- LikertMakeR-2.0.0/LikertMakeR/inst/doc/reliability_measures.R | 7 LikertMakeR-2.0.0/LikertMakeR/inst/doc/reliability_measures.Rmd | 1435 +-- LikertMakeR-2.0.0/LikertMakeR/inst/doc/reliability_measures.html | 55 LikertMakeR-2.0.0/LikertMakeR/man/alpha.Rd | 3 LikertMakeR-2.0.0/LikertMakeR/man/alpha_sensitivity.Rd |only LikertMakeR-2.0.0/LikertMakeR/man/makeCorrAlpha.Rd | 145 LikertMakeR-2.0.0/LikertMakeR/man/makeItemsScale.Rd | 176 LikertMakeR-2.0.0/LikertMakeR/man/makePaired.Rd | 9 LikertMakeR-2.0.0/LikertMakeR/man/makeScales.Rd | 9 LikertMakeR-2.0.0/LikertMakeR/man/print.makeScalesRegression.Rd | 1 LikertMakeR-2.0.0/LikertMakeR/man/reliability.Rd | 2 LikertMakeR-2.0.0/LikertMakeR/tests/testthat/test-alpha_sensitivity.R |only LikertMakeR-2.0.0/LikertMakeR/tests/testthat/test-makeCorrAlpha.R | 41 LikertMakeR-2.0.0/LikertMakeR/tests/testthat/test-reliability-basic.R | 75 LikertMakeR-2.0.0/LikertMakeR/tests/testthat/test-reliability-options.R | 94 LikertMakeR-2.0.0/LikertMakeR/vignettes/LikertMakeR_vignette.Rmd | 3914 ++++------ LikertMakeR-2.0.0/LikertMakeR/vignettes/img/dwevedi_model.png |only LikertMakeR-2.0.0/LikertMakeR/vignettes/img/flow_makeItemsScale.png |only LikertMakeR-2.0.0/LikertMakeR/vignettes/img/flow_rearrangeRowValues.png |only LikertMakeR-2.0.0/LikertMakeR/vignettes/preamble.tex |only LikertMakeR-2.0.0/LikertMakeR/vignettes/reliability_measures.Rmd | 1435 +-- 49 files changed, 8063 insertions(+), 8550 deletions(-)
Title: Helper Functions for Species Delimitation Analysis
Description: Helpers functions to process, analyse, and visualize the output of
single locus species delimitation methods.
For full functionality, please install suggested software at
<https://legallab.github.io/delimtools/articles/install.html>.
Author: Pedro Bittencourt [aut, cre, cph] ,
Rupert Collins [aut, ctb, cph] ,
Tomas Hrbek [aut, ctb]
Maintainer: Pedro Bittencourt <pedro.sennabittencourt@gmail.com>
This is a re-admission after prior archival of version 0.2.1 dated 2025-09-29
Diff between delimtools versions 0.2.1 dated 2025-09-29 and 0.2.2 dated 2026-03-23
delimtools-0.2.1/delimtools/vignettes/geophagus.abgd.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.disthist.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Histo.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.HistoCum.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_1.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_1.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_10.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_10.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_2.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_2.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_3.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_3.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_4.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_4.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_5.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_5.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_6.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_6.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_7.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_7.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_8.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_8.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_9.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_9.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.clado.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.curve.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.groups.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.spart |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.spart.xml |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.1.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.2.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.3.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.4.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.5.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.6.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.7.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.8.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.1.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.2.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.3.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.4.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.5.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.6.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.7.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.8.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.rank.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus_raxml.nwk.mptp.multi.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus_raxml.nwk.mptp.multi.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus_raxml.nwk.mptp.single.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus_raxml.nwk.mptp.single.txt |only delimtools-0.2.2/delimtools/DESCRIPTION | 8 delimtools-0.2.2/delimtools/MD5 | 93 ++-------- delimtools-0.2.2/delimtools/NEWS.md | 4 delimtools-0.2.2/delimtools/R/abgd_tbl.R | 35 +++ delimtools-0.2.2/delimtools/R/asap_tbl.R | 29 ++- delimtools-0.2.2/delimtools/R/bgmyc_tbl.R | 8 delimtools-0.2.2/delimtools/R/clean_dna.R | 2 delimtools-0.2.2/delimtools/R/confidence_intervals.R | 11 - delimtools-0.2.2/delimtools/R/delim_join.R | 22 +- delimtools-0.2.2/delimtools/R/gmyc_tbl.R | 6 delimtools-0.2.2/delimtools/R/match_ratio.R | 2 delimtools-0.2.2/delimtools/R/mptp_tbl.R | 10 - delimtools-0.2.2/delimtools/README.md | 65 ++---- delimtools-0.2.2/delimtools/build/vignette.rds |binary delimtools-0.2.2/delimtools/man/abgd_tbl.Rd | 6 delimtools-0.2.2/delimtools/man/asap_tbl.Rd | 4 delimtools-0.2.2/delimtools/man/bgmyc_tbl.Rd | 8 delimtools-0.2.2/delimtools/man/confidence_intervals.Rd | 11 - delimtools-0.2.2/delimtools/man/delim_join.Rd | 22 +- delimtools-0.2.2/delimtools/man/figures/README-example-1.png |binary delimtools-0.2.2/delimtools/man/gmyc_tbl.Rd | 6 delimtools-0.2.2/delimtools/man/mptp_tbl.Rd | 10 - 73 files changed, 168 insertions(+), 194 deletions(-)
Title: A Toolkit for Connecting R and Large Language Models
Description: A complete toolkit for connecting 'R' environments with Large
Language Models (LLMs). Provides utilities for describing 'R' objects,
package documentation, and workspace state in plain text formats
optimized for LLM consumption. Supports multiple workflows:
interactive copy-paste to external chat interfaces, programmatic tool
registration with 'ellmer' chat clients, batteries-included chat
applications via 'shinychat', and exposure to external coding agents
through the Model Context Protocol. Project configuration files enable
stable, repeatable conversations with project-specific context and
preferred LLM settings.
Author: Garrick Aden-Buie [aut, cre] ,
Simon Couch [aut] ,
Joe Cheng [aut],
Posit Software, PBC [cph, fnd],
Google [cph] ,
Microsoft [cph] ,
Jamie Perkins [cph]
Maintainer: Garrick Aden-Buie <garrick@adenbuie.com>
Diff between btw versions 1.2.0 dated 2026-03-16 and 1.2.1 dated 2026-03-23
DESCRIPTION | 6 +- MD5 | 34 ++++++------- NEWS.md | 8 +++ R/edit_btw_md.R | 12 ++-- R/tool-files-edit.R | 93 +++++++++++++++++++++++++++++++++++- R/tool-files-read.R | 28 ++++++++++ R/tool-files-replace.R | 35 ++++++++++++- R/tool-skills.R | 57 ++++++++++++++++------ R/utils.R | 26 ++++++---- exec/btw.R | 5 - man/btw_skill_install_github.Rd | 5 + man/btw_skill_install_package.Rd | 5 + man/btw_tool_files_edit.Rd | 97 ++++++++++++++++++++++++++++++++++++-- man/btw_tool_files_read.Rd | 29 ++++++++++- man/btw_tool_files_replace.Rd | 37 ++++++++++++-- man/btw_tool_skill.Rd | 5 + man/use_btw_md.Rd | 12 ++-- tests/testthat/test-tool_skills.R | 34 +++++++++++++ 18 files changed, 445 insertions(+), 83 deletions(-)
Title: Access to the List of Bird Species of Peru
Description: Provides access to the species checklist published in
'List of the Birds of Peru' by Plenge, M. A. and Angulo, F.
(version 29-12-2025) <https://sites.google.com/site/boletinunop/checklist>.
The package exposes the current Peru bird checklist as an R dataset and
includes tools for species lookup, taxonomic reconciliation, and fuzzy
matching of scientific names. These features help streamline taxonomic
validation for researchers and conservationists.
Author: Paul E. Santos Andrade [aut, cre, cph]
Maintainer: Paul E. Santos Andrade <paulefrens@gmail.com>
Diff between avesperu versions 0.0.8 dated 2026-01-08 and 0.1.0 dated 2026-03-23
avesperu-0.0.8/avesperu/tests/testthat/test-test_search_avesperu.R |only avesperu-0.1.0/avesperu/DESCRIPTION | 22 avesperu-0.1.0/avesperu/MD5 | 41 + avesperu-0.1.0/avesperu/NAMESPACE | 2 avesperu-0.1.0/avesperu/R/aves_peru_2025_v5.R | 13 avesperu-0.1.0/avesperu/R/aves_peru_data.R | 3 avesperu-0.1.0/avesperu/R/get_avesperu.R | 96 ++- avesperu-0.1.0/avesperu/R/internals.R | 262 ++++++---- avesperu-0.1.0/avesperu/R/onload.R | 33 - avesperu-0.1.0/avesperu/R/shiny-app.R |only avesperu-0.1.0/avesperu/README.md | 31 + avesperu-0.1.0/avesperu/inst/extdata |only avesperu-0.1.0/avesperu/man/aves_peru_2025_v4.Rd | 3 avesperu-0.1.0/avesperu/man/aves_peru_2025_v5.Rd | 13 avesperu-0.1.0/avesperu/man/figures/README-unnamed-chunk-3-1.png |only avesperu-0.1.0/avesperu/man/figures/shiny_app.png |only avesperu-0.1.0/avesperu/man/parse_unop_date.Rd |only avesperu-0.1.0/avesperu/man/run_avesperu_app.Rd |only avesperu-0.1.0/avesperu/man/search_avesperu.Rd | 3 avesperu-0.1.0/avesperu/man/unop_check_update.Rd | 20 avesperu-0.1.0/avesperu/tests/testthat/helper-expectations.R |only avesperu-0.1.0/avesperu/tests/testthat/test-find-duplicates.R |only avesperu-0.1.0/avesperu/tests/testthat/test-parallel-processing.R |only avesperu-0.1.0/avesperu/tests/testthat/test-result-creators.R |only avesperu-0.1.0/avesperu/tests/testthat/test-search-avesperu.R |only avesperu-0.1.0/avesperu/tests/testthat/test-shiny-app-helpers.R |only avesperu-0.1.0/avesperu/tests/testthat/test-standardize-names.R |only avesperu-0.1.0/avesperu/tests/testthat/test-unop-check-update.R |only 28 files changed, 378 insertions(+), 164 deletions(-)
Title: 'AV1' Video Encoding for Biological Microscopy Data
Description: Converts legacy microscopy video formats (H.264/H.265, AVI/MJPEG,
TIFF stacks) to the modern 'AV1' codec with minimal quality loss. Typical
use cases include compressing large TIFF stacks from confocal microscopy and
time-lapse experiments from hundreds of gigabytes to manageable sizes,
re-encoding MP4 files exported from 'CellProfiler', 'ImageJ'/'Fiji', and
microscope software with approximately 2x better compression at the same
visual quality, and converting legacy AVI (MJPEG) and H.265 recordings to a
single patent-free format suited for long-term archival. Automatically selects
the best available backend: GPU hardware acceleration via 'Vulkan'
'VK_KHR_VIDEO_ENCODE_AV1' or 'VAAPI' (tested on AMD RDNA4; bundled headers,
builds with any 'Vulkan' SDK >= 1.3.275), with automatic fallback to CPU
encoding through 'FFmpeg' and 'SVT-AV1'. User controls quality via a single
CRF parameter; each backend adapts automatically (CPU and Vulkan use CRF
directly, VAAPI targets 55 percent of input [...truncated...]
Author: Yuri Baramykov [aut, cre]
Maintainer: Yuri Baramykov <lbsbmsu@mail.ru>
Diff between AV1R versions 0.1.2 dated 2026-03-05 and 0.1.3 dated 2026-03-23
DESCRIPTION | 20 + MD5 | 61 +++-- NEWS.md | 53 ++++ R/backend.R | 54 +++- R/batch.R | 239 ++++++++++++++++----- R/convert.R | 348 ++++++++++++++++++++++++++------ R/input.R | 2 R/options.R | 65 ++++- R/quality.R | 188 ++++++++++++++++- R/utils.R | 4 README.md | 101 ++++++++- inst/examples/batch_convert.R |only inst/examples/benchmark_backends.R |only inst/examples/calibrate_crf.R |only inst/examples/calibrate_raw.R |only inst/examples/calibrate_tiff_crf.R |only inst/examples/calibrate_vaapi_bitrate.R |only inst/examples/calibrate_vaapi_cqp.R |only inst/examples/encode_gpu.R | 8 inst/examples/tiff_scale.R |only man/AV1R-package.Rd | 2 man/av1r_options.Rd | 25 +- man/convert_folder.Rd | 27 ++ man/convert_to_av1.Rd | 5 man/detect_backend.Rd | 10 man/read_tiff_stack.Rd | 2 src/av1r_bindings.cpp | 1 src/av1r_encode_vulkan.cpp | 11 - src/av1r_vk_video_loader.h | 1 tests/testthat/test-backend.R | 39 +++ tests/testthat/test-batch.R | 2 tests/testthat/test-compute-size.R |only tests/testthat/test-encode.R |only tests/testthat/test-ffmpeg.R | 50 ++++ tests/testthat/test-options.R | 55 +++++ tests/testthat/test-quality-internal.R |only tests/testthat/test-tiff.R |only tests/testthat/test-utils.R |only 38 files changed, 1143 insertions(+), 230 deletions(-)
Title: Parse 'User-Agent' Strings
Description: Despite there being a section in RFC 7231
<https://datatracker.ietf.org/doc/html/rfc7231#section-5.5.3> defining a suggested
structure for 'User-Agent' headers this data is notoriously difficult
to parse consistently. Tools are provided that will take in user agent
strings and return structured R objects. This is a 'V8'-backed package
based on the 'ua-parser' project <https://github.com/ua-parser>.
Author: Bob Rudis [aut, cph],
Greg Hunt [aut, cre, cph],
Lindsey Simon [aut] ,
Tobie Langel [aut] ,
Colman Humphrey [ctb]
Maintainer: Greg Hunt <greg@firmansyah.com>
Diff between uaparserjs versions 0.3.5 dated 2020-05-11 and 0.3.6 dated 2026-03-23
DESCRIPTION | 22 +++++++++-------- LICENSE | 3 +- MD5 | 11 ++++---- NEWS.md | 12 ++++++--- README.md | 49 ++-------------------------------------- inst/js/newbuild |only inst/tinytest/test_uaparserjs.R | 9 ++++++- 7 files changed, 39 insertions(+), 67 deletions(-)
Title: University of Cincinnati Themes and Utilities for Econometrics
and Data Science
Description: Provides plotting helpers, table-formatting utilities, and
report templates for econometrics, model development, and applied data
analysis. Includes University of Cincinnati branded themes for
'ggplot2', 'modelsummary', 'flextable', 'rmarkdown', 'bookdown', and
'quarto'.
Author: Saannidhya Rawat [aut, cre]
Maintainer: Saannidhya Rawat <rawatsa@mail.uc.edu>
Diff between Rbearcat versions 0.2.1 dated 2026-03-21 and 0.2.2 dated 2026-03-23
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/aaa_uc_brand.R | 8 ++++---- inst/doc/formatting.html | 2 +- inst/rmarkdown/templates/bcat_beamer/skeleton/skeleton.Rmd | 2 +- 5 files changed, 13 insertions(+), 13 deletions(-)
Title: Develop Hybridization Probes
Description: Hybridization probes for target sequences can be made based on melting temperature value calculated by R package 'TmCalculator' <https://CRAN.R-project.org/package=TmCalculator> and methods extended from Beliveau, B. J.,(2018) <doi:10.1073/pnas.1714530115>, and those hybridization probes can be used to capture specific target regions in fluorescence in situ hybridization and next generation sequence experiments.
Author: Junhui Li [cre, aut]
Maintainer: Junhui Li <ljh.biostat@gmail.com>
Diff between ProbeDeveloper versions 1.1.0 dated 2022-01-30 and 1.1.1 dated 2026-03-23
DESCRIPTION | 20 - MD5 | 8 NAMESPACE | 7 R/ProbeMake.R | 802 ++++++++++++++++++++++++++++--------------------------- man/ProbeMake.Rd | 59 ++-- 5 files changed, 466 insertions(+), 430 deletions(-)
More information about ProbeDeveloper at CRAN
Permanent link
Title: Graph Prediction from a Graph Time Series
Description: Predicting the structure of a graph including new nodes and edges using
a time series of graphs. Flux balance analysis, a linear and integer programming
technique used in biochemistry is used with time series prediction methods to
predict the graph structure at a future time point
Kandanaarachchi (2025) <doi:10.48550/arXiv.2507.05806>.
Author: Sevvandi Kandanaarachchi [aut, cre] ,
Stefan Westerlund [aut]
Maintainer: Sevvandi Kandanaarachchi <sevvandik@gmail.com>
Diff between netseer versions 0.1.2 dated 2025-09-10 and 0.1.3 dated 2026-03-23
DESCRIPTION | 12 +++++++----- MD5 | 21 +++++++++++++++++---- NAMESPACE | 5 +++++ R/functions.R | 3 +++ R/measure_error.R |only R/read_graphs.R |only R/syngraphs-data.R |only data |only inst/doc/netseer.html | 12 ++++++------ inst/extdata |only man/load_graphs.Rd |only man/load_graphs_dir.Rd |only man/load_graphs_list.Rd |only man/measure_error.Rd |only man/save_graphs.Rd |only man/syngraphs.Rd |only 16 files changed, 38 insertions(+), 15 deletions(-)
Title: Models for Correlation Matrices Based on Graphs
Description: Implement some models for
correlation/covariance matrices including two approaches
to model correlation matrices from a graphical structure.
One use latent parent variables as proposed in
Sterrantino et. al. (2024) <doi:10.1007/s10260-025-00788-y>.
The other uses a graph to specify conditional
relations between the variables.
The graphical structure makes correlation matrices
interpretable and avoids the quadratic increase of
parameters as a function of the dimension.
In the first approach a natural sequence of simpler
models along with a complexity penalization is used.
The second penalizes deviations from a base model.
These can be used as prior for model parameters,
considering C code through the 'cgeneric' interface
for the 'INLA' package (<https://www.r-inla.org>).
This allows one to use these models as building
blocks combined and to other latent Gaussian models
in order to build complex data models.
Author: Elias Teixeira Krainski [cre, aut, cph] ,
Denis Rustand [aut, cph] ,
Anna Freni-Sterrantino [aut, cph] ,
Janet van Niekerk [aut, cph] ,
Haavard Rue’ [aut]
Maintainer: Elias Teixeira Krainski <eliaskrainski@gmail.com>
This is a re-admission after prior archival of version 0.1.15 dated 2026-01-15
Diff between graphpcor versions 0.1.15 dated 2026-01-15 and 0.1.24 dated 2026-03-23
graphpcor-0.1.15/graphpcor/R/aaa_classes.R |only graphpcor-0.1.15/graphpcor/R/aaa_methods.R |only graphpcor-0.1.15/graphpcor/R/cgeneric_pc_prec_correl.R |only graphpcor-0.1.15/graphpcor/inst/doc/treepcor.pdf |only graphpcor-0.1.15/graphpcor/man/KLD10.Rd |only graphpcor-0.1.15/graphpcor/man/Lprec0.Rd |only graphpcor-0.1.15/graphpcor/man/basecor-class.Rd |only graphpcor-0.1.15/graphpcor/man/basepcor-class.Rd |only graphpcor-0.1.15/graphpcor/man/cgeneric_pc_prec_correl.Rd |only graphpcor-0.1.15/graphpcor/man/fillLprec.Rd |only graphpcor-0.1.15/graphpcor/man/graphpcor-class.Rd |only graphpcor-0.1.15/graphpcor/man/hessian.graphpcor.Rd |only graphpcor-0.1.15/graphpcor/man/treepcor-class.Rd |only graphpcor-0.1.15/graphpcor/src |only graphpcor-0.1.24/graphpcor/DESCRIPTION | 13 graphpcor-0.1.24/graphpcor/MD5 | 102 +- graphpcor-0.1.24/graphpcor/NAMESPACE | 35 graphpcor-0.1.24/graphpcor/R/Laplacian.R |only graphpcor-0.1.24/graphpcor/R/aaa.R |only graphpcor-0.1.24/graphpcor/R/basecor.R | 119 +- graphpcor-0.1.24/graphpcor/R/basecor_utils.R | 160 --- graphpcor-0.1.24/graphpcor/R/basepcor.R | 172 +-- graphpcor-0.1.24/graphpcor/R/basepcor_utils.R | 68 - graphpcor-0.1.24/graphpcor/R/cgeneric_LKJ.R | 31 graphpcor-0.1.24/graphpcor/R/cgeneric_Wishart.R | 91 -- graphpcor-0.1.24/graphpcor/R/cgeneric_graphpcor.R | 340 ++++--- graphpcor-0.1.24/graphpcor/R/cgeneric_pc_correl.R | 336 ++++--- graphpcor-0.1.24/graphpcor/R/cgeneric_treepcor.R | 12 graphpcor-0.1.24/graphpcor/R/edges.R |only graphpcor-0.1.24/graphpcor/R/graphpcor.R | 408 ++++----- graphpcor-0.1.24/graphpcor/R/internal_utils.R |only graphpcor-0.1.24/graphpcor/R/numeric_utils.R |only graphpcor-0.1.24/graphpcor/R/stan.R |only graphpcor-0.1.24/graphpcor/R/treepcor.R | 274 +++--- graphpcor-0.1.24/graphpcor/build/vignette.rds |binary graphpcor-0.1.24/graphpcor/demo/00Index | 1 graphpcor-0.1.24/graphpcor/demo/basecor.R | 32 graphpcor-0.1.24/graphpcor/demo/basepcor.R | 63 + graphpcor-0.1.24/graphpcor/demo/graphpcor.R | 17 graphpcor-0.1.24/graphpcor/demo/minimal.R | 8 graphpcor-0.1.24/graphpcor/demo/pc_correl.R | 98 +- graphpcor-0.1.24/graphpcor/demo/stan.R |only graphpcor-0.1.24/graphpcor/demo/treepcor.R | 112 +- graphpcor-0.1.24/graphpcor/inst/doc/treepcor.R | 131 ++ graphpcor-0.1.24/graphpcor/inst/doc/treepcor.Rmd | 632 +++++++++++++- graphpcor-0.1.24/graphpcor/inst/doc/treepcor.html |only graphpcor-0.1.24/graphpcor/man/Laplacian.Rd | 7 graphpcor-0.1.24/graphpcor/man/basecor-utils.Rd | 43 graphpcor-0.1.24/graphpcor/man/basecor.Rd |only graphpcor-0.1.24/graphpcor/man/basepcor-utils.Rd |only graphpcor-0.1.24/graphpcor/man/basepcor.Rd |only graphpcor-0.1.24/graphpcor/man/cgeneric_LKJ.Rd | 31 graphpcor-0.1.24/graphpcor/man/cgeneric_Wishart.Rd | 15 graphpcor-0.1.24/graphpcor/man/cgeneric_graphpcor.Rd | 105 +- graphpcor-0.1.24/graphpcor/man/cgeneric_pc_correl.Rd | 120 +- graphpcor-0.1.24/graphpcor/man/edges.Rd |only graphpcor-0.1.24/graphpcor/man/graphpcor.Rd |only graphpcor-0.1.24/graphpcor/man/internal-utils.Rd |only graphpcor-0.1.24/graphpcor/man/numeric-utils.Rd |only graphpcor-0.1.24/graphpcor/man/stan_add.Rd |only graphpcor-0.1.24/graphpcor/man/treepcor.Rd |only graphpcor-0.1.24/graphpcor/vignettes/treepcor.Rmd | 632 +++++++++++++- 62 files changed, 2681 insertions(+), 1527 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-11 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-01-26 0.3.0
2026-01-22 0.2.0
Title: Infrastructure for the Traveling Salesperson Problem
Description: Basic infrastructure and some algorithms for the traveling
salesperson problem (also traveling salesman problem; TSP).
The package provides some simple algorithms and
an interface to the Concorde TSP solver and its implementation of the
Chained-Lin-Kernighan heuristic. The code for Concorde
itself is not included in the package and has to be obtained separately.
Hahsler and Hornik (2007) <doi:10.18637/jss.v023.i02>.
Author: Michael Hahsler [aut, cre, cph] ,
Kurt Hornik [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between TSP versions 1.2.6 dated 2025-11-27 and 1.2.7 dated 2026-03-23
DESCRIPTION | 8 +- MD5 | 30 ++++----- NEWS.md | 5 + R/TSPLIB.R | 59 +++++++++++++++---- R/solve_TSP.R | 97 +++++++++++++++++++------------- R/tsp_SA.R | 6 + README.md | 65 +++++++++++---------- inst/README_files/unnamed-chunk-6-1.png |binary inst/doc/TSP.R | 34 +++++------ inst/doc/TSP.Rnw | 9 +- inst/doc/TSP.pdf |binary man/TSPLIB.Rd | 2 man/solve_TSP.Rd | 96 ++++++++++++++++++++----------- tests/testthat/test-TSPLIB.R | 65 +++++++++++++++++++++ vignettes/TSP.Rnw | 9 +- vignettes/TSP.bib | 6 - 16 files changed, 327 insertions(+), 164 deletions(-)
Title: Miscellaneous Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Statistics to locate and tag peaks and valleys and to label plots
with the equation of a fitted polynomial model by ordinary least squares,
major axis, quantile and robust and resistant regression approaches. Line
and model equation for Normal mixture models. Labels for P-value,
R^2 or adjusted R^2 or information criteria for fitted models; parametric
and non-parametric correlation; ANOVA table or summary table for fitted
models as plot insets; annotations for multiple pairwise
comparisons with adjusted P-values. Model fit classes for which suitable
methods are provided by package 'broom' and 'broom.mixed' are supported as
well as user-defined wrappers on model fit functions, allowing model
selection and conditional labelling. Scales and stats to
build volcano and quadrant plots based on
outcomes, fold changes, p-values and false discovery rates.
Author: Pedro J. Aphalo [aut, cre] ,
Kamil Slowikowski [ctb] ,
Samer Mouksassi [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpmisc versions 0.6.3 dated 2025-11-29 and 0.7.0 dated 2026-03-23
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293 files changed, 14948 insertions(+), 13474 deletions(-)
Title: File-Backed Array for Out-of-Memory Computation
Description: Stores large arrays in files to avoid occupying large
memories. Implemented with super fast gigabyte-level multi-threaded
reading/writing via 'OpenMP'. Supports multiple non-character data
types (double, float, complex, integer, logical, and raw).
Author: Zhengjia Wang [aut, cre, cph]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between filearray versions 0.2.0 dated 2025-04-01 and 0.2.1 dated 2026-03-23
DESCRIPTION | 8 +++--- MD5 | 24 ++++++++++--------- NEWS.md | 7 +++++ R/RcppExports.R | 4 +++ R/methods-subset.R | 13 ++++------ build/vignette.rds |binary inst/doc/performance.html | 5 ++-- src/RcppExports.cpp | 13 ++++++++++ src/collapse.cpp | 6 +++- src/common.h | 1 src/compat.h |only src/core.cpp | 2 - src/utils.cpp | 52 +++++++++++++++++++++++++++++++++++++------ tests/testthat/test-compat.R |only 14 files changed, 101 insertions(+), 34 deletions(-)