Title: Pediatric Blood Pressure
Description: Data and utilities for estimating pediatric blood pressure
percentiles by sex, age, and optionally height (stature) as described in
Martin et al. (2022) <doi:10.1001/jamanetworkopen.2022.36918>.
Blood pressure percentiles for children under one year of age come from Gemelli
et al. (1990) <doi:10.1007/BF02171556>. Estimates of blood pressure
percentiles for children at least one year of age are informed by
data from the National Heart, Lung, and Blood Institute (NHLBI) and the
Centers for Disease Control and Prevention (CDC)
<doi:10.1542/peds.2009-2107C> or from Lo et al. (2013)
<doi:10.1542/peds.2012-1292>. The source-selection flowchart comes from Martin et al. (2022)
<doi:10.1542/hpeds.2021-005998>.
Author: Peter DeWitt [aut, cre] ,
Blake Martin [ctb] ,
David Albers [ctb] ,
Tell Bennett [ctb]
Maintainer: Peter DeWitt <peter.dewitt@cuanschutz.edu>
Diff between pedbp versions 2.0.3 dated 2025-06-12 and 2.1.0 dated 2026-03-23
pedbp-2.0.3/pedbp/build/partial.rdb |only pedbp-2.1.0/pedbp/DESCRIPTION | 17 - pedbp-2.1.0/pedbp/MD5 | 98 +++--- pedbp-2.1.0/pedbp/NEWS.md | 17 + pedbp-2.1.0/pedbp/R/RcppExports.R | 3 pedbp-2.1.0/pedbp/R/bp_cdf_plot.R | 9 pedbp-2.1.0/pedbp/R/bp_charts.R | 2 pedbp-2.1.0/pedbp/R/bp_distribution.R | 68 +++- pedbp-2.1.0/pedbp/R/datasets.R | 5 pedbp-2.1.0/pedbp/R/growth-standards.R | 7 pedbp-2.1.0/pedbp/R/pedbp-package.R | 12 pedbp-2.1.0/pedbp/R/sysdata.rda |binary pedbp-2.1.0/pedbp/R/weight_for_stature.R | 2 pedbp-2.1.0/pedbp/README.md | 13 pedbp-2.1.0/pedbp/build/vignette.rds |binary pedbp-2.1.0/pedbp/data/bp_parameters.rda |binary pedbp-2.1.0/pedbp/data/flynn2017.rda |binary pedbp-2.1.0/pedbp/data/gemelli1990.rda |binary pedbp-2.1.0/pedbp/data/lo2013.rda |binary pedbp-2.1.0/pedbp/data/nhlbi_bp_norms.rda |binary pedbp-2.1.0/pedbp/inst/doc/bp-distributions.R | 11 pedbp-2.1.0/pedbp/inst/doc/bp-distributions.Rmd | 16 - pedbp-2.1.0/pedbp/inst/doc/bp-distributions.html | 88 +++-- pedbp-2.1.0/pedbp/inst/doc/growth-standards.R | 7 pedbp-2.1.0/pedbp/inst/doc/growth-standards.Rmd | 13 pedbp-2.1.0/pedbp/inst/doc/growth-standards.html | 7 pedbp-2.1.0/pedbp/inst/shinyapps/pedbp/server.R | 151 ++++++---- pedbp-2.1.0/pedbp/inst/shinyapps/pedbp/ui.R | 9 pedbp-2.1.0/pedbp/man/bmi_for_age.Rd | 9 pedbp-2.1.0/pedbp/man/bp_cdf.Rd | 4 pedbp-2.1.0/pedbp/man/bp_chart.Rd | 2 pedbp-2.1.0/pedbp/man/bp_distribution.Rd | 42 +- pedbp-2.1.0/pedbp/man/bpdata.Rd | 4 pedbp-2.1.0/pedbp/man/cppBP.Rd | 3 pedbp-2.1.0/pedbp/man/growth-standards.Rd | 9 pedbp-2.1.0/pedbp/man/gs_chart.Rd | 7 pedbp-2.1.0/pedbp/man/head_circumference_for_age.Rd | 9 pedbp-2.1.0/pedbp/man/pedbp-package.Rd | 13 pedbp-2.1.0/pedbp/man/stature_for_age.Rd | 9 pedbp-2.1.0/pedbp/man/weight_for_age.Rd | 9 pedbp-2.1.0/pedbp/man/weight_for_stature.Rd | 11 pedbp-2.1.0/pedbp/src/blood_pressure.cpp | 33 +- pedbp-2.1.0/pedbp/src/growth_standards.cpp | 26 - pedbp-2.1.0/pedbp/src/utilities.cpp | 2 pedbp-2.1.0/pedbp/tests/test-bp-by-source.R | 48 --- pedbp-2.1.0/pedbp/tests/test-bp-percentile-consistency-regressions.R |only pedbp-2.1.0/pedbp/tests/test-bp_cdf.R | 2 pedbp-2.1.0/pedbp/tests/test-bp_distributions.R | 30 - pedbp-2.1.0/pedbp/tests/test-cppBP.R | 4 pedbp-2.1.0/pedbp/vignettes/bp-distributions.Rmd | 16 - pedbp-2.1.0/pedbp/vignettes/growth-standards.Rmd | 13 51 files changed, 491 insertions(+), 369 deletions(-)
Title: National Institutes of Health Brain Development Cohorts Data Hub
Tools
Description: A suite of functions to work with data from the National Institutes
of Health Brain Development Cohorts Data Hub. The package provides tools to
create, clean, process, and filter datasets and associated metadata. These
utilities are intended to simplify reproducible data-preparation for
future research.
Author: Le Zhang [aut, cre] ,
Janosch Linkersdoerfer [aut]
Maintainer: Le Zhang <dairc.service@gmail.com>
Diff between NBDCtools versions 1.0.2 dated 2025-10-05 and 1.1.0 dated 2026-03-23
NBDCtools-1.0.2/NBDCtools/man/create_bids_sidecar.Rd |only NBDCtools-1.1.0/NBDCtools/DESCRIPTION | 10 NBDCtools-1.1.0/NBDCtools/MD5 | 46 - NBDCtools-1.1.0/NBDCtools/NAMESPACE | 12 NBDCtools-1.1.0/NBDCtools/NEWS.md | 26 NBDCtools-1.1.0/NBDCtools/R/NBDCtools-package.R | 1 NBDCtools-1.1.0/NBDCtools/R/dataset.R | 12 NBDCtools-1.1.0/NBDCtools/R/globals.R | 3 NBDCtools-1.1.0/NBDCtools/R/join.R | 122 ++ NBDCtools-1.1.0/NBDCtools/R/metadata.R | 199 +++- NBDCtools-1.1.0/NBDCtools/R/shadow.R | 8 NBDCtools-1.1.0/NBDCtools/R/transform.R | 22 NBDCtools-1.1.0/NBDCtools/R/utils.R | 270 +++++- NBDCtools-1.1.0/NBDCtools/README.md | 23 NBDCtools-1.1.0/NBDCtools/build/vignette.rds |binary NBDCtools-1.1.0/NBDCtools/inst/doc/NBDCtools.R | 2 NBDCtools-1.1.0/NBDCtools/inst/doc/NBDCtools.Rmd | 2 NBDCtools-1.1.0/NBDCtools/inst/doc/NBDCtools.html | 443 ++++++---- NBDCtools-1.1.0/NBDCtools/inst/extdata/meta_internal/lst_session_latest.rds |only NBDCtools-1.1.0/NBDCtools/man/NBDCtools-package.Rd | 4 NBDCtools-1.1.0/NBDCtools/man/add_custom_metadata.Rd |only NBDCtools-1.1.0/NBDCtools/man/create_bids_sidecar_data.Rd |only NBDCtools-1.1.0/NBDCtools/man/create_bids_sidecar_metadata.Rd |only NBDCtools-1.1.0/NBDCtools/man/create_dataset.Rd | 14 NBDCtools-1.1.0/NBDCtools/man/get_releases.Rd |only NBDCtools-1.1.0/NBDCtools/man/join_tabulated.Rd | 16 NBDCtools-1.1.0/NBDCtools/vignettes/NBDCtools.Rmd | 2 27 files changed, 983 insertions(+), 254 deletions(-)
Title: Multi-Visit Closed Population Mark-Recapture Estimates
Description: Compute bootstrap confidence intervals for the adjusted Schnabel and Schumacher-Eschmeyer multi-visit mark-recapture estimators based on Dettloff (2023) <doi:10.1016/j.fishres.2023.106756>.
Author: Kyle Dettloff [aut, cre, cph]
Maintainer: Kyle Dettloff <kyle.dettloff@noaa.gov>
Diff between mRc versions 0.1.0 dated 2023-08-28 and 0.1.1 dated 2026-03-23
DESCRIPTION | 9 ++- MD5 | 10 ++-- NAMESPACE | 4 + NEWS.md |only R/mrc_boot_CI.R | 137 ++++++++++++++++++++++++++++++++++++++------------------ build |only man/closedCI.Rd | 24 +++++---- 7 files changed, 123 insertions(+), 61 deletions(-)
Title: Light Daily Alcohol and Longevity
Description: Contains data from an observational study concerning possible effects of light daily alcohol consumption on survival and on HDL cholesterol. It also replicates various simple analyses in Rosenbaum (2025) <doi:10.1080/09332480.2025.2473291>. Finally, it includes new R code in wgtRankCef() that implements and replicates a new method for constructing evidence factors in observational block designs in Rosenbaum (2026) <doi:10.1080/01621459.2026.2624858>).
Author: Paul Rosenbaum [aut, cre]
Maintainer: Paul Rosenbaum <rosenbaum@wharton.upenn.edu>
Diff between alcoholSurv versions 0.7.0 dated 2025-05-27 and 0.7.2 dated 2026-03-23
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/wgtRankCef.R | 2 -- build/partial.rdb |binary man/alcoholSurv-package.Rd | 5 ++--- man/alcoholSurv.Rd | 4 +++- man/wgtRankCef.Rd | 17 ++++++++++------- 7 files changed, 25 insertions(+), 23 deletions(-)
Title: Multivariate Spatio-Temporal Models using Structural Equations
Description: Fits a wide variety of multivariate spatio-temporal models
with simultaneous and lagged interactions among variables (including
vector autoregressive spatio-temporal ('VAST') dynamics)
for areal, continuous, or network spatial domains.
It includes time-variable, space-variable, and space-time-variable
interactions using dynamic structural equation models ('DSEM')
as expressive interface, and the 'mgcv' package to specify splines
via the formula interface. See Thorson et al. (2025)
<doi:10.1111/geb.70035> for more details.
Author: James T. Thorson [aut, cre] ,
Sean C. Anderson [aut]
Maintainer: James T. Thorson <James.Thorson@noaa.gov>
Diff between tinyVAST versions 1.4.0 dated 2025-12-20 and 1.5.0 dated 2026-03-23
DESCRIPTION | 11 MD5 | 48 - NAMESPACE | 11 NEWS.md | 8 R/fit.R | 75 +- R/internal.R | 56 + R/methods.R | 8 R/predict.R | 10 R/project.R | 13 R/sanity.R |only R/utility.R | 30 build/partial.rdb |binary build/vignette.rds |binary inst/doc/dsem.html | 109 +-- inst/doc/mgcv.html | 2 inst/doc/multiple_data.html | 2 inst/doc/spatial.html | 14 inst/doc/spatial_factor_analysis.html | 77 +- man/atlantic_yellowtail.Rd | 30 man/predict.tinyVAST.Rd | 10 man/project.Rd | 10 man/sanity.Rd |only man/tinyVAST.Rd | 5 tests/testthat/test-deviance-residuals.R | 7 tests/testthat/test-smooths.R | 36 - vignettes/tinyVAST_vignettes.bib | 1062 +++++++++++++++---------------- 26 files changed, 914 insertions(+), 720 deletions(-)
Title: Download Data from Bank of Spain
Description: Tools to download data series from 'Banco de España' ('BdE')
on 'tibble' format. 'Banco de España' is the national central bank
and, within the framework of the Single Supervisory Mechanism ('SSM'),
the supervisor of the Spanish banking system along with the European
Central Bank. This package is in no way sponsored endorsed or
administered by 'Banco de España'.
Author: Diego H. Herrero [aut, cre, cph]
Maintainer: Diego H. Herrero <dev.dieghernan@gmail.com>
Diff between tidyBdE versions 0.5.0 dated 2026-01-13 and 0.6.0 dated 2026-03-23
tidyBdE-0.5.0/tidyBdE/inst/doc/tidyBdE.Rmd |only tidyBdE-0.5.0/tidyBdE/vignettes/tidyBdE.Rmd |only tidyBdE-0.6.0/tidyBdE/DESCRIPTION | 10 tidyBdE-0.6.0/tidyBdE/MD5 | 74 tidyBdE-0.6.0/tidyBdE/NEWS.md | 5 tidyBdE-0.6.0/tidyBdE/R/bde_check_access.R | 122 - tidyBdE-0.6.0/tidyBdE/R/bde_tidy_palettes.R | 1 tidyBdE-0.6.0/tidyBdE/R/catalogs.R | 796 ++++---- tidyBdE-0.6.0/tidyBdE/R/data.R | 76 tidyBdE-0.6.0/tidyBdE/R/indicators.R | 378 ++-- tidyBdE-0.6.0/tidyBdE/R/scales.R | 1 tidyBdE-0.6.0/tidyBdE/R/series.R | 923 ++++------ tidyBdE-0.6.0/tidyBdE/R/superseded.R | 108 - tidyBdE-0.6.0/tidyBdE/R/tidyBdE-package.R | 18 tidyBdE-0.6.0/tidyBdE/R/utils.R | 597 +++--- tidyBdE-0.6.0/tidyBdE/README.md | 77 tidyBdE-0.6.0/tidyBdE/build/vignette.rds |binary tidyBdE-0.6.0/tidyBdE/data/bde_ind_db.rda |binary tidyBdE-0.6.0/tidyBdE/inst/CITATION | 2 tidyBdE-0.6.0/tidyBdE/inst/COPYRIGHTS | 8 tidyBdE-0.6.0/tidyBdE/inst/doc/tidyBdE.html | 420 +--- tidyBdE-0.6.0/tidyBdE/inst/doc/tidyBdE.qmd |only tidyBdE-0.6.0/tidyBdE/inst/schemaorg.json | 4 tidyBdE-0.6.0/tidyBdE/man/bde_catalog_load.Rd | 14 tidyBdE-0.6.0/tidyBdE/man/bde_catalog_search.Rd | 10 tidyBdE-0.6.0/tidyBdE/man/bde_catalog_update.Rd | 6 tidyBdE-0.6.0/tidyBdE/man/bde_check_access.Rd | 2 tidyBdE-0.6.0/tidyBdE/man/bde_ind_db.Rd | 18 tidyBdE-0.6.0/tidyBdE/man/bde_indicators.Rd | 6 tidyBdE-0.6.0/tidyBdE/man/bde_parse_dates.Rd | 7 tidyBdE-0.6.0/tidyBdE/man/bde_series_full_load.Rd | 12 tidyBdE-0.6.0/tidyBdE/man/bde_series_load.Rd | 15 tidyBdE-0.6.0/tidyBdE/man/chunks/bde_ind_db_meta.Rmd | 3 tidyBdE-0.6.0/tidyBdE/man/scales_bde.Rd | 1 tidyBdE-0.6.0/tidyBdE/tests/testthat.R | 24 tidyBdE-0.6.0/tidyBdE/tests/testthat/_snaps/bde_tidy_palettes.md | 30 tidyBdE-0.6.0/tidyBdE/tests/testthat/_snaps/superseded.md | 36 tidyBdE-0.6.0/tidyBdE/tests/testthat/test-bde_tidy_palettes.R | 1 tidyBdE-0.6.0/tidyBdE/tests/testthat/test-scales.R | 1 tidyBdE-0.6.0/tidyBdE/vignettes/tidyBdE.qmd |only 40 files changed, 1839 insertions(+), 1967 deletions(-)
Title: Cross-Sectional Dependence Models
Description: Provides estimators and utilities for large panel-data models with cross-sectional dependence, including mean group (MG), common correlated effects (CCE) and dynamic CCE (DCCE) estimators, and cross-sectionally augmented ARDL (CS-ARDL) specifications, plus related inference and diagnostics.
Author: Joao Claudio Macosso [aut, cre]
Maintainer: Joao Claudio Macosso <joaoclaudiomacosso@gmail.com>
Diff between csdm versions 1.0.0 dated 2026-02-20 and 1.0.1 dated 2026-03-23
DESCRIPTION | 17 - MD5 | 36 +- NAMESPACE | 1 NEWS.md | 39 +- R/csdm.R | 166 ++++++++---- R/data.R | 6 R/utils_cd.R | 16 - R/zzz_imports.R | 1 README.md | 183 ++++++++++--- build/partial.rdb |only inst/REFERENCES.bib |only inst/WORDLIST | 4 inst/apa.csl |only inst/doc/introduction_to_csdm.R | 3 inst/doc/introduction_to_csdm.Rmd | 210 ++++++++++++--- inst/doc/introduction_to_csdm.html | 509 +++++++++++++++++++++++++++---------- man/PWT_60_07.Rd | 6 man/cd_test.Rd | 16 - man/csdm.Rd | 164 ++++++++--- man/figures |only vignettes/introduction_to_csdm.Rmd | 210 ++++++++++++--- 21 files changed, 1157 insertions(+), 430 deletions(-)
Title: Convert from One Colour Space to Another, Print a Ready-to-Paste
Modern 'CSS' Syntax
Description: Provides a comprehensive 'API' for colour conversion between popular
colour spaces ('RGB', 'HSL', 'OKLab', 'OKLch', 'hex', and named colours) along with
clean, modern 'CSS' Color Level 4 syntax output. Integrates seamlessly into
'Shiny' and 'Quarto' workflows. Includes nearest colour name lookup powered by
a curated database of over 30,000 colour names.
'OKLab'/'OKLCh' colour spaces are described in Ottosson (2020)
<https://bottosson.github.io/posts/oklab/>. 'CSS' Color Level 4 syntax follows
the W3C specification <https://www.w3.org/TR/css-color-4/>.
Author: Yann Cohen [aut, cre]
Maintainer: Yann Cohen <yannco5@gmail.com>
Diff between colourspace versions 0.0.1 dated 2026-03-04 and 0.1.1 dated 2026-03-23
DESCRIPTION | 19 MD5 | 37 - NEWS.md |only R/convert.R | 29 - R/css.R | 436 +++++++-------- R/fallback.R | 173 +++-- R/from_css.R | 408 +++++++------- R/wrappers.R | 25 README.md | 24 inst |only man/convert_colourspace.Rd | 103 +-- man/from_css.Rd | 140 ++-- man/hex_to_name.Rd | 64 +- man/to_css.Rd | 109 +-- tests/testthat/test-css-accuracy.R |only tests/testthat/test-css-internals.R | 110 ++- tests/testthat/test-fallback-no-match.R | 105 +-- tests/testthat/test-fallback.R | 72 +- tests/testthat/test-from_css.R | 924 ++++++++++++++++---------------- tests/testthat/test-hex_to_name.R | 24 tests/testthat/test-to_css.R | 112 +-- 21 files changed, 1476 insertions(+), 1438 deletions(-)
Title: Climate AEMET Tools
Description: Tools to download the climatic data of the Spanish
Meteorological Agency (AEMET) directly from R using their API and
create scientific graphs (climate charts, trend analysis of climate
time series, temperature and precipitation anomalies maps, warming
stripes graphics, climatograms, etc.).
Author: Manuel Pizarro [aut, cph] ,
Diego Hernangomez [aut, cre] ,
Gema Fernandez-Aviles [aut] ,
AEMET [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between climaemet versions 1.5.0 dated 2026-01-11 and 1.5.1 dated 2026-03-23
climaemet-1.5.0/climaemet/inst/doc/climaemet.Rmd |only climaemet-1.5.0/climaemet/inst/doc/extending-climaemet.Rmd |only climaemet-1.5.0/climaemet/vignettes/climaemet.Rmd |only climaemet-1.5.0/climaemet/vignettes/extending-climaemet.Rmd |only climaemet-1.5.1/climaemet/DESCRIPTION | 15 climaemet-1.5.1/climaemet/MD5 | 184 - climaemet-1.5.1/climaemet/NEWS.md | 22 climaemet-1.5.1/climaemet/R/aemet-alert-zones.R | 228 - climaemet-1.5.1/climaemet/R/aemet-alerts.R | 17 climaemet-1.5.1/climaemet/R/aemet-api-key.R | 389 +- climaemet-1.5.1/climaemet/R/aemet-api-query.R | 8 climaemet-1.5.1/climaemet/R/aemet-beaches.R | 217 - climaemet-1.5.1/climaemet/R/aemet-daily.R | 16 climaemet-1.5.1/climaemet/R/aemet-extremes.R | 8 climaemet-1.5.1/climaemet/R/aemet-forecast-beach.R | 7 climaemet-1.5.1/climaemet/R/aemet-forecast-daily.R | 5 climaemet-1.5.1/climaemet/R/aemet-forecast-fires.R | 2 climaemet-1.5.1/climaemet/R/aemet-forecast-hourly.R | 18 climaemet-1.5.1/climaemet/R/aemet-forecast-utils.R | 33 climaemet-1.5.1/climaemet/R/aemet-last-obs.R | 6 climaemet-1.5.1/climaemet/R/aemet-monthly.R | 844 ++--- climaemet-1.5.1/climaemet/R/aemet-normal.R | 361 +- climaemet-1.5.1/climaemet/R/aemet-stations.R | 4 climaemet-1.5.1/climaemet/R/climaemet-news.R | 46 climaemet-1.5.1/climaemet/R/climatogram.R | 1596 ++++------ climaemet-1.5.1/climaemet/R/data.R | 11 climaemet-1.5.1/climaemet/R/helpers-api.R | 4 climaemet-1.5.1/climaemet/R/helpers.R | 225 - climaemet-1.5.1/climaemet/R/stripes.R | 914 ++--- climaemet-1.5.1/climaemet/R/utils.R | 151 climaemet-1.5.1/climaemet/R/windrose.R | 16 climaemet-1.5.1/climaemet/README.md | 125 climaemet-1.5.1/climaemet/build/vignette.rds |binary climaemet-1.5.1/climaemet/data/aemet_munic.rda |binary climaemet-1.5.1/climaemet/data/climaemet_9434_climatogram.rda |binary climaemet-1.5.1/climaemet/data/climaemet_9434_temp.rda |binary climaemet-1.5.1/climaemet/data/climaemet_9434_wind.rda |binary climaemet-1.5.1/climaemet/inst/CITATION | 42 climaemet-1.5.1/climaemet/inst/COPYRIGHTS | 19 climaemet-1.5.1/climaemet/inst/REFERENCES.bib | 5 climaemet-1.5.1/climaemet/inst/doc/climaemet.html | 399 -- climaemet-1.5.1/climaemet/inst/doc/climaemet.qmd |only climaemet-1.5.1/climaemet/inst/doc/extending-climaemet.html | 404 -- climaemet-1.5.1/climaemet/inst/doc/extending-climaemet.qmd |only climaemet-1.5.1/climaemet/inst/schemaorg.json | 4 climaemet-1.5.1/climaemet/man/aemet_alert_zones.Rd | 14 climaemet-1.5.1/climaemet/man/aemet_alerts.Rd | 14 climaemet-1.5.1/climaemet/man/aemet_api_key.Rd | 28 climaemet-1.5.1/climaemet/man/aemet_beaches.Rd | 8 climaemet-1.5.1/climaemet/man/aemet_daily.Rd | 10 climaemet-1.5.1/climaemet/man/aemet_detect_api_key.Rd | 14 climaemet-1.5.1/climaemet/man/aemet_extremes_clim.Rd | 8 climaemet-1.5.1/climaemet/man/aemet_forecast.Rd | 13 climaemet-1.5.1/climaemet/man/aemet_forecast_beaches.Rd | 6 climaemet-1.5.1/climaemet/man/aemet_forecast_fires.Rd | 4 climaemet-1.5.1/climaemet/man/aemet_forecast_utils.Rd | 5 climaemet-1.5.1/climaemet/man/aemet_last_obs.Rd | 6 climaemet-1.5.1/climaemet/man/aemet_monthly.Rd | 6 climaemet-1.5.1/climaemet/man/aemet_munic.Rd | 4 climaemet-1.5.1/climaemet/man/aemet_normal.Rd | 6 climaemet-1.5.1/climaemet/man/aemet_stations.Rd | 6 climaemet-1.5.1/climaemet/man/climaemet_9434_temp.Rd | 2 climaemet-1.5.1/climaemet/man/climaemet_9434_wind.Rd | 2 climaemet-1.5.1/climaemet/man/figures/README-spatial-1.png |binary climaemet-1.5.1/climaemet/man/get_data_aemet.Rd | 5 climaemet-1.5.1/climaemet/man/ggclimat_walter_lieth.Rd | 2 climaemet-1.5.1/climaemet/man/ggwindrose.Rd | 8 climaemet-1.5.1/climaemet/tests/testthat/_snaps/aemet-extremes.md | 2 climaemet-1.5.1/climaemet/tests/testthat/_snaps/aemet-forecast-fires.md | 16 climaemet-1.5.1/climaemet/tests/testthat/_snaps/aemet-forecast-hourly.md | 68 climaemet-1.5.1/climaemet/tests/testthat/_snaps/aemet-last-obs.md | 48 climaemet-1.5.1/climaemet/tests/testthat/_snaps/aemet-monthly.md | 176 - climaemet-1.5.1/climaemet/tests/testthat/_snaps/aemet-normal.md | 48 climaemet-1.5.1/climaemet/tests/testthat/_snaps/aemet-stations.md | 32 climaemet-1.5.1/climaemet/tests/testthat/_snaps/climatogram.md | 54 climaemet-1.5.1/climaemet/tests/testthat/_snaps/helpers.md | 196 - climaemet-1.5.1/climaemet/tests/testthat/_snaps/stripes.md | 64 climaemet-1.5.1/climaemet/tests/testthat/_snaps/utils.md | 44 climaemet-1.5.1/climaemet/tests/testthat/_snaps/windrose.md | 222 - climaemet-1.5.1/climaemet/tests/testthat/test-aemet-alert-zones.R | 1 climaemet-1.5.1/climaemet/tests/testthat/test-aemet-alerts.R | 170 - climaemet-1.5.1/climaemet/tests/testthat/test-aemet-api-key.R | 3 climaemet-1.5.1/climaemet/tests/testthat/test-aemet-api-query.R | 223 - climaemet-1.5.1/climaemet/tests/testthat/test-aemet-beaches.R | 1 climaemet-1.5.1/climaemet/tests/testthat/test-aemet-extremes.R | 105 climaemet-1.5.1/climaemet/tests/testthat/test-aemet-forecast-daily.R | 88 climaemet-1.5.1/climaemet/tests/testthat/test-aemet-forecast-fires.R | 1 climaemet-1.5.1/climaemet/tests/testthat/test-aemet-forecast-hourly.R | 2 climaemet-1.5.1/climaemet/tests/testthat/test-aemet-monthly.R | 1 climaemet-1.5.1/climaemet/tests/testthat/test-aemet-stations.R | 73 climaemet-1.5.1/climaemet/tests/testthat/test-climatogram.R | 162 - climaemet-1.5.1/climaemet/tests/testthat/test-helpers.R | 1 climaemet-1.5.1/climaemet/tests/testthat/test-windrose.R | 238 - climaemet-1.5.1/climaemet/vignettes/climaemet.qmd |only climaemet-1.5.1/climaemet/vignettes/example-gif.gif |binary climaemet-1.5.1/climaemet/vignettes/extending-climaemet.qmd |only climaemet-1.5.1/climaemet/vignettes/spatial-1.png |binary 97 files changed, 4068 insertions(+), 4487 deletions(-)
Title: A Shiny Dashboard Template Modular System with Chat Bot Support
Description: A template dashboard system with AI agent integrated.
Comes with default themes that can be customized.
Developers can upload modified templates on 'Github', and users can
easily download templates with 'RStudio' project wizard.
The key features of the default template include light and dark theme
switcher, resizing graphs, synchronizing inputs across sessions,
new notification system, fancy progress bars, and card-like flip
panels with back sides, as well as various of 'HTML' tool widgets.
Author: Zhengjia Wang [cph, aut, cre] ,
ColorlibHQ [cph] ,
Bootstrap contributors [ctb] ,
Twitter, Inc [cph] ,
Ivan Sagalaev [ctb, cph] ,
Rene Haas [ctb, cph] ,
Zeno Rocha [ctb, cph]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between shidashi versions 0.1.6 dated 2024-02-16 and 0.1.8 dated 2026-03-23
DESCRIPTION | 30 - MD5 | 150 ++++++-- NAMESPACE | 17 NEWS.md | 42 ++ R/aaa.R | 27 + R/barebone.R | 467 ++++++++++++++++++++++--- R/card-tabset.R | 42 +- R/card-tool.R | 1 R/chat-helpers.R |only R/chatbot.R |only R/drawer.R |only R/ellmer-helpers.R |only R/globals.R |only R/info-box.R | 3 R/mcp-handler.R |only R/mcp-wrapper.R |only R/menu-item.R | 9 R/modules.R | 226 ++++++++++-- R/progress.R | 2 R/render.R | 57 ++- R/rstudio.R | 53 +- R/settings.R | 9 R/shared-session.R | 21 - R/skill-parse.R |only R/skill-runner.R |only R/skill-wrapper.R |only R/ui-adminlte.R | 4 R/widgets.R | 84 +++- R/zzz.R | 1 inst/builtin-templates/AdminLTE3-bare/R |only inst/builtin-templates/AdminLTE3-bare/server.R |only inst/builtin-templates/AdminLTE3-bare/ui.R |only inst/builtin-templates/bslib-bare |only inst/global.R |only inst/mcp-proxy |only inst/rstudio/templates/project/shidashi.dcf | 2 man/back_top_button.Rd | 25 + man/bslib_dependency.Rd |only man/chatbot_server.Rd |only man/chatbot_ui.Rd |only man/drawer.Rd |only man/init_app.Rd |only man/init_chat.Rd |only man/mcp_wrapper.Rd |only man/module_drawer.Rd |only man/module_info.Rd | 47 ++ man/open_url.Rd |only man/progressOutput.Rd | 2 man/register_io.Rd |only man/skill_wrapper.Rd |only man/use_template.Rd | 7 tests |only 52 files changed, 1111 insertions(+), 217 deletions(-)
More information about gsClusterDetect at CRAN
Permanent link
Title: Econometric Production Analysis with Ray-Based Distance
Functions
Description: Econometric analysis of multiple-input-multiple-output
production technologies with ray-based input distance functions as suggested
by Price and Henningsen (2023): "A Ray-Based Input Distance Function to Model
Zero-Valued Output Quantities: Derivation and an Empirical Application",
Journal of Productivity Analysis 60, p. 179-188,
<doi:10.1007/s11123-023-00684-1>.
Author: Arne Henningsen [aut, cre],
Juan Jose Price [aut]
Maintainer: Arne Henningsen <arne.henningsen@gmail.com>
Diff between micEconDistRay versions 0.1-2 dated 2023-05-12 and 0.1-4 dated 2026-03-23
DESCRIPTION | 13 ++++--- MD5 | 14 ++++---- R/zzz.R | 8 ++-- inst/CITATION | 20 ++++++----- inst/NEWS.Rd | 7 ++++ tests/MuseumsDk_test.R | 4 +- tests/MuseumsDk_test.Rout.save | 62 ++++++++++++++++++------------------- tests/appleProdFr86_test.Rout.save | 10 ++--- 8 files changed, 74 insertions(+), 64 deletions(-)
More information about micEconDistRay at CRAN
Permanent link
Title: Multi-Reader Multi-Case Analysis of Binary Diagnostic Tests
Description: Implements methods for comparing sensitivities and specificities in balanced (or fully crossed) multi-reader multi-case (MRMC) studies with binary diagnostic test results. It implements conditional logistic regression and provides score tests equivalent to Cochran's Q test (which corresponds to McNemar's test when comparing two modalities only). The methodology is based on Lee et al. (2026) <doi:10.1002/sim.70471>.
Author: Seungjae Lee [aut, cre] ,
Woojoo Lee [aut]
Maintainer: Seungjae Lee <seungjae2525@gmail.com>
Diff between MRMCbinary versions 1.0.5 dated 2025-02-20 and 1.0.6 dated 2026-03-23
DESCRIPTION | 13 ++-- MD5 | 37 +++++++------ NEWS.md | 7 ++ R/MRMCbinary-package.R | 4 - R/MRMCbinary.R | 122 ++++++++++++++++++++++++++++------------------ R/SensSpec.R | 48 +++++++++--------- R/VanDyke.R | 29 ++++++---- R/print.MRMCbinary.R | 14 +++-- R/print.SensSpec.R | 8 +-- R/printf_MRMC.R | 36 +++++++++++-- R/summary.MRMCbinary.R | 17 ++++-- R/summaryf_MRMC.R | 25 +++++++-- build |only man/MRMCbinary-package.Rd | 4 - man/MRMCbinary.Rd | 118 +++++++++++++++++++++++++++----------------- man/SensSpec.Rd | 36 +++++++------ man/VanDyke.Rd | 29 ++++++---- man/print.MRMCbinary.Rd | 14 +++-- man/print.SensSpec.Rd | 8 +-- man/summary.MRMCbinary.Rd | 17 ++++-- 20 files changed, 361 insertions(+), 225 deletions(-)
Title: Lipid Annotation for LC-MS/MS DDA or DIA Data
Description: Lipid annotation in untargeted LC-MS lipidomics based on fragmentation rules. Alcoriza-Balaguer MI, Garcia-Canaveras JC, Lopez A, Conde I, Juan O, Carretero J, Lahoz A (2019) <doi:10.1021/acs.analchem.8b03409>.
Author: M Isabel Alcoriza-Balaguer [aut, cre],
Celia Regal-Marques [aut]
Maintainer: M Isabel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>
Diff between LipidMS versions 3.1.2 dated 2025-12-18 and 3.1.3 dated 2026-03-23
LipidMS-3.1.2/LipidMS/data/carnitinesdb.rda |only LipidMS-3.1.2/LipidMS/man/carnitinesdb.Rd |only LipidMS-3.1.3/LipidMS/DESCRIPTION | 6 LipidMS-3.1.3/LipidMS/MD5 | 32 - LipidMS-3.1.3/LipidMS/R/LipidMS.R | 2 LipidMS-3.1.3/LipidMS/R/additionalFunctions.R | 2 LipidMS-3.1.3/LipidMS/R/dataProcessing.R | 538 ------------------- LipidMS-3.1.3/LipidMS/R/idFunctionsPos.R | 8 LipidMS-3.1.3/LipidMS/R/internaldbs.R | 2 LipidMS-3.1.3/LipidMS/R/msbatchAnnotationFunctions.R | 4 LipidMS-3.1.3/LipidMS/build/vignette.rds |binary LipidMS-3.1.3/LipidMS/data/carnitinedb.rda |only LipidMS-3.1.3/LipidMS/inst/LipidMSapp/app.R | 2 LipidMS-3.1.3/LipidMS/man/alignmsbatch.Rd | 4 LipidMS-3.1.3/LipidMS/man/annotatemsbatch.Rd | 4 LipidMS-3.1.3/LipidMS/man/batchdataProcessing.Rd | 4 LipidMS-3.1.3/LipidMS/man/carnitinedb.Rd |only LipidMS-3.1.3/LipidMS/man/groupmsbatch.Rd | 4 LipidMS-3.1.3/LipidMS/man/idPOS.Rd | 2 19 files changed, 44 insertions(+), 570 deletions(-)
Title: R Client for 'Customer Journey Analytics' ('CJA') API
Description: Connect and pull data from the 'CJA' API, which powers 'CJA Workspace' <https://github.com/AdobeDocs/cja-apis>.
The package was developed with the analyst in mind and will
continue to be developed with the guiding principles of iterative,
repeatable, timely analysis. New features are actively being
developed and we value your feedback and contribution to the process.
Author: Ben Woodard [aut, cre],
Charles Gallagher [ctb],
Braxton Butcher [ctb]
Maintainer: Ben Woodard <benrwoodard@gmail.com>
Diff between cjar versions 0.2.0 dated 2025-01-16 and 0.2.1 dated 2026-03-23
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 8 ++++++-- R/globals.R | 3 ++- README.md | 7 +++++-- 5 files changed, 21 insertions(+), 13 deletions(-)
Title: Get Spanish Origin-Destination Data
Description: Gain seamless access to origin-destination (OD) data from the
Spanish Ministry of Transport, hosted at
<https://www.transportes.gob.es/ministerio/proyectos-singulares/estudios-de-movilidad-con-big-data/opendata-movilidad>.
This package simplifies the management of these large datasets by
providing tools to download zone boundaries, handle associated
origin-destination data, and process it efficiently with the 'duckdb'
database interface. Local caching minimizes repeated downloads,
streamlining workflows for researchers and analysts. Methods
described in Kotov et al. (2026) <doi:10.1177/23998083251415040>.
Extensive documentation is available at
<https://ropenspain.github.io/spanishoddata/index.html>, offering
guides on creating static and dynamic mobility flow visualizations and
transforming large datasets into analysis-ready formats.
Author: Egor Kotov [aut, cre] ,
Robin Lovelace [aut] ,
Eugeni Vidal-Tortosa [ctb]
Maintainer: Egor Kotov <kotov.egor@gmail.com>
Diff between spanishoddata versions 0.2.2 dated 2026-02-24 and 0.2.3 dated 2026-03-23
DESCRIPTION | 6 MD5 | 24 +-- NEWS.md | 6 R/get-zones.R | 10 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/convert.html | 147 ++++++++++++++++++++- inst/doc/quick-get.html | 144 ++++++++++++++++++++ inst/doc/v1-2020-2021-mitma-data-codebook.html | 147 ++++++++++++++++++++- inst/doc/v2-2022-onwards-mitma-data-codebook.html | 151 +++++++++++++++++++++- inst/doc/v2-2022-onwards-mitma-data-codebook.qmd | 4 inst/schemaorg.json | 4 vignettes/v2-2022-onwards-mitma-data-codebook.qmd | 4 13 files changed, 607 insertions(+), 40 deletions(-)
Title: Statistical Inference in High Dimensional Regression
Description: The goal of SIHR is to provide inference procedures in the high-dimensional generalized linear regression setting for:
(1) linear functionals <doi:10.48550/arXiv.1904.12891> <doi:10.48550/arXiv.2012.07133>,
(2) conditional average treatment effects,
(3) quadratic functionals <doi:10.48550/arXiv.1909.01503>,
(4) inner product,
(5) distance.
Author: Zhenyu Wang [aut],
Prabrisha Rakshit [aut],
Tony Cai [aut],
Zijian Guo [aut, cre]
Maintainer: Zijian Guo <zijguo@stat.rutgers.edu>
Diff between SIHR versions 2.1.0 dated 2024-04-24 and 2.1.1 dated 2026-03-23
DESCRIPTION | 23 +++++++++-------- MD5 | 13 +++++---- NEWS.md |only R/helpers.R | 70 +++++++++++++++++++++++++++++++++++++++-------------- README.md | 11 +++++++- build/vignette.rds |binary inst/CITATION | 14 ++++++++-- inst/doc/SIHR.html | 55 +++++++++++++++++++++++------------------ 8 files changed, 123 insertions(+), 63 deletions(-)
Title: Fitting Linear Models with Endogenous Regressors using Latent
Instrumental Variables
Description: Fits linear models with endogenous regressor using latent instrumental variable approaches.
The methods included in the package are Lewbel's (1997) <doi:10.2307/2171884> higher moments approach as well as
Lewbel's (2012) <doi:10.1080/07350015.2012.643126> heteroscedasticity approach, Park and Gupta's (2012) <doi:10.1287/mksc.1120.0718> joint estimation method
that uses Gaussian copula and Kim and Frees's (2007) <doi:10.1007/s11336-007-9008-1> multilevel generalized
method of moment approach that deals with endogeneity in a multilevel setting.
These are statistical techniques to address the endogeneity problem where no external instrumental variables are needed.
See the publication related to this package in the Journal of Statistical Software for more details: <doi:10.18637/jss.v107.i03>.
Note that with version 2.0.0 sweeping changes were introduced which greatly improve functionality and usability but break backwards compatibility.
Author: Raluca Gui [cre, aut],
Markus Meierer [aut],
Rene Algesheimer [aut],
Patrik Schilter [aut]
Maintainer: Raluca Gui <raluca.gui@gmail.com>
Diff between REndo versions 2.4.10 dated 2024-07-02 and 2.4.11 dated 2026-03-23
DESCRIPTION | 15 ++++++++------- MD5 | 16 ++++++++-------- NAMESPACE | 2 +- NEWS.md | 7 +++++++ R/f_checkinput_multilevel.R | 10 ++++++++-- R/f_multilevelIV.R | 2 +- README.md | 2 +- build/partial.rdb |binary build/vignette.rds |binary 9 files changed, 34 insertions(+), 20 deletions(-)
Title: Interface to 'REDCap'
Description: Access data stored in 'REDCap' databases using the Application
Programming Interface (API). 'REDCap' (Research Electronic Data CAPture;
<https://projectredcap.org>, Harris, et al. (2009) <doi:10.1016/j.jbi.2008.08.010>,
Harris, et al. (2019) <doi:10.1016/j.jbi.2019.103208>) is
a web application for building and managing online surveys and databases
developed at Vanderbilt University. The API allows users to access data
and project meta data (such as the data dictionary) from the web
programmatically. The 'redcapAPI' package facilitates the process of
accessing data with options to prepare an analysis-ready data set
consistent with the definitions in a database's data dictionary.
Author: Benjamin Nutter [ctb, aut],
Shawn Garbett [cre, ctb] ,
Savannah Obregon [ctb],
Thomas Obadia [ctb],
Marcus Lehr [ctb],
Brian High [ctb],
Stephen Lane [ctb],
Will Beasley [ctb],
Will Gray [ctb],
Nick Kennedy [ctb],
Tan Hsi-Nien [ctb],
Jeffrey Horner [ [...truncated...]
Maintainer: Shawn Garbett <shawn.garbett@vumc.org>
Diff between redcapAPI versions 2.11.5 dated 2025-12-09 and 2.12.0 dated 2026-03-23
redcapAPI-2.11.5/redcapAPI/inst/doc/redcapAPI-best-practices.Rnw |only redcapAPI-2.11.5/redcapAPI/inst/doc/redcapAPI-casting-data.Rnw |only redcapAPI-2.11.5/redcapAPI/inst/doc/redcapAPI-data-validation.Rnw |only redcapAPI-2.11.5/redcapAPI/inst/doc/redcapAPI-faq.Rnw |only redcapAPI-2.11.5/redcapAPI/inst/doc/redcapAPI-getting-started-connecting.Rnw |only redcapAPI-2.11.5/redcapAPI/inst/doc/redcapAPI-missing-data-detection.Rnw |only redcapAPI-2.11.5/redcapAPI/inst/doc/redcapAPI-offline-connection.Rnw |only redcapAPI-2.11.5/redcapAPI/vignettes/precompiled-best-practices.pdf |only redcapAPI-2.11.5/redcapAPI/vignettes/precompiled-casting-data.pdf |only redcapAPI-2.11.5/redcapAPI/vignettes/precompiled-data-validation.pdf |only redcapAPI-2.11.5/redcapAPI/vignettes/precompiled-faq.pdf |only redcapAPI-2.11.5/redcapAPI/vignettes/precompiled-getting-started-connecting.pdf |only redcapAPI-2.11.5/redcapAPI/vignettes/precompiled-missing-data-detection.pdf |only redcapAPI-2.11.5/redcapAPI/vignettes/precompiled-offline-connection.pdf |only redcapAPI-2.11.5/redcapAPI/vignettes/redcapAPI-best-practices.Rnw |only redcapAPI-2.11.5/redcapAPI/vignettes/redcapAPI-casting-data.Rnw |only redcapAPI-2.11.5/redcapAPI/vignettes/redcapAPI-data-validation.Rnw |only redcapAPI-2.11.5/redcapAPI/vignettes/redcapAPI-faq.Rnw |only redcapAPI-2.11.5/redcapAPI/vignettes/redcapAPI-getting-started-connecting.Rnw |only redcapAPI-2.11.5/redcapAPI/vignettes/redcapAPI-missing-data-detection.Rnw |only redcapAPI-2.11.5/redcapAPI/vignettes/redcapAPI-offline-connection.Rnw |only redcapAPI-2.12.0/redcapAPI/DESCRIPTION | 18 - redcapAPI-2.12.0/redcapAPI/MD5 | 149 ++++---- redcapAPI-2.12.0/redcapAPI/NEWS.md | 118 ++++--- redcapAPI-2.12.0/redcapAPI/R/constants.R | 58 +-- redcapAPI-2.12.0/redcapAPI/R/createFileRepositoryFolder.R | 2 redcapAPI-2.12.0/redcapAPI/R/deleteFileRepository.R | 4 redcapAPI-2.12.0/redcapAPI/R/docsRecordsTypedMethods.R | 2 redcapAPI-2.12.0/redcapAPI/R/exportArms.R | 22 - redcapAPI-2.12.0/redcapAPI/R/exportDags.R | 23 - redcapAPI-2.12.0/redcapAPI/R/exportEvents.R | 40 +- redcapAPI-2.12.0/redcapAPI/R/exportExternalCoding.R | 168 +++++----- redcapAPI-2.12.0/redcapAPI/R/exportFieldNames.R | 88 ++--- redcapAPI-2.12.0/redcapAPI/R/exportFileRepository.R | 2 redcapAPI-2.12.0/redcapAPI/R/exportFileRepositoryListing.R | 132 +++---- redcapAPI-2.12.0/redcapAPI/R/exportInstruments.R | 28 - redcapAPI-2.12.0/redcapAPI/R/exportLogging.R | 137 ++++---- redcapAPI-2.12.0/redcapAPI/R/exportMappings.R | 38 +- redcapAPI-2.12.0/redcapAPI/R/exportMetaData.R | 41 +- redcapAPI-2.12.0/redcapAPI/R/exportProjectInformation.R | 5 redcapAPI-2.12.0/redcapAPI/R/exportRecordsTyped.R | 7 redcapAPI-2.12.0/redcapAPI/R/exportRepeatingInstrumentsEvents.R | 26 - redcapAPI-2.12.0/redcapAPI/R/exportReportsTyped.R | 2 redcapAPI-2.12.0/redcapAPI/R/exportSurveyParticipants.R | 58 +-- redcapAPI-2.12.0/redcapAPI/R/exportUserDagAssignments.R | 24 - redcapAPI-2.12.0/redcapAPI/R/exportUserRoleAssignments.R | 2 redcapAPI-2.12.0/redcapAPI/R/exportUserRoles.R | 95 ++--- redcapAPI-2.12.0/redcapAPI/R/exportUsers.R | 2 redcapAPI-2.12.0/redcapAPI/R/importDags.R | 2 redcapAPI-2.12.0/redcapAPI/R/importMetaData.R | 2 redcapAPI-2.12.0/redcapAPI/R/importRecords.R | 2 redcapAPI-2.12.0/redcapAPI/R/importUserDagAssignments.R | 1 redcapAPI-2.12.0/redcapAPI/R/importUsers.R | 25 + redcapAPI-2.12.0/redcapAPI/R/prepUserImportData.R | 21 - redcapAPI-2.12.0/redcapAPI/R/redcapConnection.R | 29 + redcapAPI-2.12.0/redcapAPI/R/redcapDataStructure.R | 33 + redcapAPI-2.12.0/redcapAPI/R/writeDataForImport.R | 17 - redcapAPI-2.12.0/redcapAPI/build/vignette.rds |binary redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-best-practices.pdf |binary redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-best-practices.pdf.asis |only redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-casting-data.pdf |binary redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-casting-data.pdf.asis |only redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-data-validation.pdf |binary redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-data-validation.pdf.asis |only redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-faq.pdf |binary redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-faq.pdf.asis |only redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-getting-started-connecting.pdf |binary redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-getting-started-connecting.pdf.asis |only redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-missing-data-detection.pdf |binary redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-missing-data-detection.pdf.asis |only redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-offline-connection.pdf |binary redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-offline-connection.pdf.asis |only redcapAPI-2.12.0/redcapAPI/man/exportExternalCoding.Rd | 10 redcapAPI-2.12.0/redcapAPI/man/exportFieldNames.Rd | 8 redcapAPI-2.12.0/redcapAPI/man/exportFileRepositoryListing.Rd | 14 redcapAPI-2.12.0/redcapAPI/man/exportInstruments.Rd | 8 redcapAPI-2.12.0/redcapAPI/man/exportLogging.Rd | 18 - redcapAPI-2.12.0/redcapAPI/man/recordsTypedMethods.Rd | 4 redcapAPI-2.12.0/redcapAPI/man/redcapAPI.Rd | 1 redcapAPI-2.12.0/redcapAPI/man/redcapConnection.Rd | 6 redcapAPI-2.12.0/redcapAPI/man/writeDataForImport.Rd | 5 redcapAPI-2.12.0/redcapAPI/tests/testthat/test-020-redcapConnection-ArgumentValidation.R | 46 ++ redcapAPI-2.12.0/redcapAPI/tests/testthat/test-101-userMethods-Functionality.R | 69 +++- redcapAPI-2.12.0/redcapAPI/tests/testthat/test-102-userRoleMethods-ArgumentValidation.R | 23 + redcapAPI-2.12.0/redcapAPI/tests/testthat/test-304-fileRepository-BulkFileMethods-Functionality.R | 7 redcapAPI-2.12.0/redcapAPI/tests/testthat/test-305-exportFileRepositoryListing.R | 5 redcapAPI-2.12.0/redcapAPI/vignettes/redcapAPI-best-practices.pdf.asis |only redcapAPI-2.12.0/redcapAPI/vignettes/redcapAPI-casting-data.pdf.asis |only redcapAPI-2.12.0/redcapAPI/vignettes/redcapAPI-data-validation.pdf.asis |only redcapAPI-2.12.0/redcapAPI/vignettes/redcapAPI-faq.pdf.asis |only redcapAPI-2.12.0/redcapAPI/vignettes/redcapAPI-getting-started-connecting.pdf.asis |only redcapAPI-2.12.0/redcapAPI/vignettes/redcapAPI-missing-data-detection.pdf.asis |only redcapAPI-2.12.0/redcapAPI/vignettes/redcapAPI-offline-connection.pdf.asis |only 93 files changed, 933 insertions(+), 714 deletions(-)
Title: Analysis of Adaptive Immune Receptor Repertoire Germ Line
Statistics
Description: Multiple tools are now available for inferring the personalised
germ line set from an adaptive immune receptor repertoire.
Output from these tools is converted to
a single format and supplemented with rich data such as usage and
characterisation of 'novel' germ line alleles. This data can be
particularly useful when considering the validity of novel inferences. Use
of the analysis provided is described in <doi:10.3389/fimmu.2019.00435>.
Author: William Lees [aut, cre]
Maintainer: William Lees <william@lees.org.uk>
Diff between ogrdbstats versions 0.5.4 dated 2025-07-07 and 0.5.5 dated 2026-03-23
DESCRIPTION | 13 +++++++------ MD5 | 8 ++++---- NEWS.md | 7 ++++++- R/sequence_stats.R | 2 +- inst/doc/Using_ogrdbstats.html | 6 +++--- 5 files changed, 21 insertions(+), 15 deletions(-)
Title: Data Analysis for Censored Environmental Data
Description: Contains methods described by Dennis Helsel in
his book "Statistics for Censored Environmental Data
using Minitab and R" (2011) and courses and videos at
<https://practicalstats.com>. This package incorporates functions
of NADA and adds new functionality.
Author: Paul Julian [aut, cre],
Dennis Helsel [aut, cph],
Lopaka Lee [aut, cph]
Maintainer: Paul Julian <pauljulianphd@gmail.com>
Diff between NADA2 versions 2.0.1 dated 2025-09-30 and 2.0.2 dated 2026-03-23
DESCRIPTION | 14 +++++++------- MD5 | 18 +++++++++--------- R/NADA_icmle.R | 4 ++-- R/NADA_ros.R | 4 ++-- R/NADA_summary.R | 46 +++++++++++++++++++++++++++++++++++++--------- build/partial.rdb |binary man/MLEintvl.Rd | 2 +- man/Macmat.Rd | 2 +- man/hc_ppoints_cen.Rd | 2 +- man/hc_ppoints_uncen.Rd | 2 +- 10 files changed, 61 insertions(+), 33 deletions(-)
Title: Ordination and Multivariate Analysis for Ecology
Description: A variety of ordination and community analyses
useful in analysis of data sets in community ecology.
Includes many of the common ordination methods, with
graphical routines to facilitate their interpretation,
as well as several novel analyses.
Author: David W. Roberts [aut, cre]
Maintainer: David W. Roberts <droberts@montana.edu>
Diff between labdsv versions 2.1-2 dated 2025-07-31 and 2.3-0 dated 2026-03-23
DESCRIPTION | 6 +++--- MD5 | 17 +++++++++-------- NAMESPACE | 1 - R/as.dsvord.R | 32 ++++++++++++++++---------------- R/calibrate.R | 2 +- R/indval.R | 12 ------------ inst/ChangeLog | 5 +++++ man/indval.Rd | 15 ++------------- man/isamic.Rd | 8 +++----- src/init.c |only 10 files changed, 39 insertions(+), 59 deletions(-)
Title: Time Series Analysis Library
Description: The library allows to perform a multivariate time series
classification based on the use of Discrete Wavelet Transform for
feature extraction, a step wise discriminant to select the most
relevant features and finally, the use of a linear or quadratic
discriminant for classification. Note that all these steps can be done
separately which allows to implement new steps. Velasco, I., Sipols,
A., de Blas, C. S., Pastor, L., & Bayona, S. (2023)
<doi:10.1186/S12938-023-01079-X>. Percival, D. B., & Walden, A. T.
(2000,ISBN:0521640687). Maharaj, E. A., & Alonso, A. M. (2014)
<doi:10.1016/j.csda.2013.09.006>.
Author: Ivan Velasco [aut, cre, cph]
Maintainer: Ivan Velasco <ivan.velasco@urjc.es>
Diff between TSEAL versions 0.1.4 dated 2026-03-16 and 0.1.5 dated 2026-03-23
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/Discriminant.R | 25 +++++++++++++++++-------- 3 files changed, 22 insertions(+), 13 deletions(-)
Title: Test, Document, Containerise, and Deploy R Packages
Description: Reproducibility is essential to the progress of research,
yet achieving it remains elusive even in computational fields.
Continuous Integration (CI) platforms offer a powerful way to launch automated workflows
to check and document code, but often require considerable time, effort,
and technical expertise to setup. We therefore developed the rworkflows suite
to make robust CI workflows easy and freely accessible to all R package developers.
rworkflows consists of 1) a CRAN/Bioconductor-compatible R package template,
2) an R package to quickly implement a standardised workflow, and
3) a centrally maintained GitHub Action.
Author: Brian Schilder [aut] ,
Alan Murphy [aut, ctb] ,
Hiranyamaya Dash [ctb, cre] ,
Nathan Skene [aut]
Maintainer: Hiranyamaya (Hiru) Dash <hdash.work@gmail.com>
This is a re-admission after prior archival of version 1.0.8 dated 2026-01-08
Diff between rworkflows versions 1.0.8 dated 2026-01-08 and 1.0.10 dated 2026-03-23
DESCRIPTION | 19 +--- MD5 | 42 ++++---- NAMESPACE | 1 NEWS.md | 17 +++ R/construct_authors.R | 2 R/get_description.R | 4 R/get_description_manual.R | 4 R/gha_python_versions.R | 4 README.md | 39 ++++---- build/vignette.rds |binary inst/doc/bioconductor.html | 54 +++++------ inst/doc/depgraph.html | 99 ++++++++++----------- inst/doc/docker.html | 49 +++++----- inst/doc/repos.html | 49 +++++----- inst/doc/rworkflows.html | 150 +++++++++++++++----------------- inst/templates/bug_report.yml | 1 inst/templates/config.yml | 2 man/construct_authors.Rd | 2 man/get_description.Rd | 2 man/get_description_repo.Rd | 6 - man/gha_python_versions.Rd | 2 tests/testthat/test-construct_authors.R | 4 22 files changed, 281 insertions(+), 271 deletions(-)
Title: DicePlot Visualization for 'ggplot2'
Description: Provides 'ggplot2' extensions for creating dice-based visualizations
where each dot position represents a specific categorical variable. The package
includes geom_dice() for displaying presence/absence of categorical variables
using traditional dice patterns. Each dice position (1-6) represents a different
category, with dots shown only when that category is present. This allows
intuitive visualization of up to 6 categorical variables simultaneously.
Author: Matthias Flotho [aut, cre]
Maintainer: Matthias Flotho <matthias.flotho@ccb.uni-saarland.de>
Diff between ggdiceplot versions 1.0.1 dated 2025-12-08 and 1.1.0 dated 2026-03-23
ggdiceplot-1.0.1/ggdiceplot/R/sample_datasets.R |only ggdiceplot-1.1.0/ggdiceplot/DESCRIPTION | 14 ggdiceplot-1.1.0/ggdiceplot/LICENSE | 4 ggdiceplot-1.1.0/ggdiceplot/MD5 | 36 +- ggdiceplot-1.1.0/ggdiceplot/NAMESPACE | 3 ggdiceplot-1.1.0/ggdiceplot/NEWS.md |only ggdiceplot-1.1.0/ggdiceplot/R/geom-dice-ggprotto.R | 182 +++++++++-- ggdiceplot-1.1.0/ggdiceplot/R/geom-dice.R | 18 - ggdiceplot-1.1.0/ggdiceplot/R/ggdiceplot-package.R | 2 ggdiceplot-1.1.0/ggdiceplot/R/sample_dice_data1.R |only ggdiceplot-1.1.0/ggdiceplot/R/sample_dice_data2.R |only ggdiceplot-1.1.0/ggdiceplot/R/sample_dice_large.R |only ggdiceplot-1.1.0/ggdiceplot/R/sample_dice_miRNA.R |only ggdiceplot-1.1.0/ggdiceplot/R/utils.R | 2 ggdiceplot-1.1.0/ggdiceplot/README.md | 270 ++++++----------- ggdiceplot-1.1.0/ggdiceplot/data/sample_dice_data1.rda |binary ggdiceplot-1.1.0/ggdiceplot/data/sample_dice_data2.rda |binary ggdiceplot-1.1.0/ggdiceplot/man/geom_dice.Rd | 14 ggdiceplot-1.1.0/ggdiceplot/man/sample_dice_data1.Rd | 25 - ggdiceplot-1.1.0/ggdiceplot/man/sample_dice_data2.Rd | 22 + ggdiceplot-1.1.0/ggdiceplot/man/sample_dice_large.Rd | 22 + ggdiceplot-1.1.0/ggdiceplot/man/sample_dice_miRNA.Rd | 24 - 22 files changed, 378 insertions(+), 260 deletions(-)
Title: Nonlinear Time Series Analysis
Description: Functions for nonlinear time series analysis. This package permits
the computation of the most-used nonlinear statistics/algorithms
including generalized correlation dimension, information dimension,
largest Lyapunov exponent, sample entropy and Recurrence
Quantification Analysis (RQA), among others. Basic routines
for surrogate data testing are also included. Part of this work
was based on the book "Nonlinear time series analysis" by
Holger Kantz and Thomas Schreiber (ISBN: 9780521529020).
Author: Constantino A. Garcia [aut, cre],
Gunther Sawitzki [ctb]
Maintainer: Constantino A. Garcia <constantino.garciama@ceu.es>
Diff between nonlinearTseries versions 0.3.1 dated 2024-09-23 and 0.3.2 dated 2026-03-23
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/nonlinearTseries_quickstart.html | 19 ++++++++++--------- src/ANN.cpp | 4 ++-- tests/testthat/test_neighbour_search.R | 22 ++++++++++++++++++++++ 6 files changed, 44 insertions(+), 21 deletions(-)
More information about nonlinearTseries at CRAN
Permanent link
Title: Data Wrangling for Antimicrobial Resistance Studies
Description: Designed for analyzing the Medical Information Mart for Intensive Care(MIMIC) dataset,
a repository of freely accessible electronic health records. MIMER(MIMIC-enabled Research) package, offers
a suite of data wrangling functions tailored specifically for preparing the dataset for research purposes,
particularly in antimicrobial resistance(AMR) studies. It simplifies complex data manipulation tasks, allowing
researchers to focus on their primary inquiries without being bogged down by wrangling complexities.
Author: Anoop Velluva [aut] ,
Alessandro Gerada [cre, ctb] ,
Alexander Howard [ctb]
Maintainer: Alessandro Gerada <alessandro.gerada@liverpool.ac.uk>
Diff between MIMER versions 1.0.5 dated 2026-02-28 and 1.0.6 dated 2026-03-23
DESCRIPTION | 17 ++++++++--------- MD5 | 4 ++-- NEWS.md | 2 ++ 3 files changed, 12 insertions(+), 11 deletions(-)
Title: DRESS - A Continuous Framework for Structural Graph Refinement
Description: DRESS is a deterministic, parameter-free framework that
iteratively refines the structural similarity of edges in a graph to
produce a canonical fingerprint: a real-valued edge vector, obtained by
converging a non-linear dynamical system to its unique fixed point. The
fingerprint is isomorphism-invariant by construction, guaranteed
bitwise-equal across any vertex labeling, numerically stable
(no overflow, no error amplification, no undefined behavior), fast and embarrassingly parallel to compute:
DRESS total runtime is O(I * m * d_max) for I iterations to convergence,
and convergence is guaranteed by Birkhoff contraction.
Author: Eduar Castrillo Velilla [aut, cre]
Maintainer: Eduar Castrillo Velilla <velicast@outlook.com>
Diff between dress.graph versions 0.1.2 dated 2026-02-25 and 0.6.2 dated 2026-03-23
dress.graph-0.1.2/dress.graph/src/Makevars |only dress.graph-0.6.2/dress.graph/DESCRIPTION | 34 +- dress.graph-0.6.2/dress.graph/MD5 | 37 +- dress.graph-0.6.2/dress.graph/NAMESPACE | 4 dress.graph-0.6.2/dress.graph/R/cuda.R |only dress.graph-0.6.2/dress.graph/R/dress.R | 186 +++++++++++ dress.graph-0.6.2/dress.graph/R/mpi.R |only dress.graph-0.6.2/dress.graph/README.md |only dress.graph-0.6.2/dress.graph/configure |only dress.graph-0.6.2/dress.graph/inst |only dress.graph-0.6.2/dress.graph/man/DRESS.Rd |only dress.graph-0.6.2/dress.graph/man/cuda.Rd |only dress.graph-0.6.2/dress.graph/man/delta_dress_fit.Rd |only dress.graph-0.6.2/dress.graph/man/mpi.Rd |only dress.graph-0.6.2/dress.graph/src/Makevars.in |only dress.graph-0.6.2/dress.graph/src/Makevars.win |only dress.graph-0.6.2/dress.graph/src/delta_dress.c |only dress.graph-0.6.2/dress.graph/src/delta_dress_cuda.c |only dress.graph-0.6.2/dress.graph/src/delta_dress_impl.c |only dress.graph-0.6.2/dress.graph/src/delta_dress_impl.h |only dress.graph-0.6.2/dress.graph/src/dress.c | 226 +++++++++++-- dress.graph-0.6.2/dress.graph/src/dress/cuda |only dress.graph-0.6.2/dress.graph/src/dress/delta_dress.h |only dress.graph-0.6.2/dress.graph/src/dress/dress.h | 98 +++++ dress.graph-0.6.2/dress.graph/src/dress/mpi |only dress.graph-0.6.2/dress.graph/src/dress_cuda.cu |only dress.graph-0.6.2/dress.graph/src/dress_cuda_r.c |only dress.graph-0.6.2/dress.graph/src/dress_mpi.c |only dress.graph-0.6.2/dress.graph/src/dress_mpi_r.c |only dress.graph-0.6.2/dress.graph/src/dress_r.c | 299 +++++++++++++++++- 30 files changed, 827 insertions(+), 57 deletions(-)
Title: Access Data from the 'Kolada' Database
Description: Methods for downloading and processing data and metadata from 'Kolada', the official Swedish regions and municipalities database <https://www.kolada.se/>.
Author: Love Hansson [aut, cre, cph]
Maintainer: Love Hansson <love.hansson@gmail.com>
Diff between rKolada versions 0.3.0 dated 2026-03-04 and 0.3.1 dated 2026-03-23
rKolada-0.3.0/rKolada/man/pipe.Rd |only rKolada-0.3.0/rKolada/tests/testthat/test_api.R |only rKolada-0.3.1/rKolada/DESCRIPTION | 10 rKolada-0.3.1/rKolada/MD5 | 106 +- rKolada-0.3.1/rKolada/NAMESPACE | 4 rKolada-0.3.1/rKolada/NEWS.md | 28 rKolada-0.3.1/rKolada/R/aaa_utils.R | 89 ++ rKolada-0.3.1/rKolada/R/available.R | 47 - rKolada-0.3.1/rKolada/R/data.R | 118 +-- rKolada-0.3.1/rKolada/R/glue.R | 131 +-- rKolada-0.3.1/rKolada/R/higher_order_metadata.R | 49 - rKolada-0.3.1/rKolada/R/kpi.R | 72 - rKolada-0.3.1/rKolada/R/kpi_groups.R | 54 - rKolada-0.3.1/rKolada/R/metadata.R | 112 +-- rKolada-0.3.1/rKolada/R/municipality.R | 56 - rKolada-0.3.1/rKolada/R/municipality_grp.R | 53 - rKolada-0.3.1/rKolada/R/ou.R | 12 rKolada-0.3.1/rKolada/R/rKolada.R | 17 rKolada-0.3.1/rKolada/R/sysdata.rda |binary rKolada-0.3.1/rKolada/R/table_specs.R | 10 rKolada-0.3.1/rKolada/README.md | 4 rKolada-0.3.1/rKolada/build/vignette.rds |binary rKolada-0.3.1/rKolada/inst/doc/a-quickstart-rkolada.R | 25 rKolada-0.3.1/rKolada/inst/doc/a-quickstart-rkolada.Rmd | 61 + rKolada-0.3.1/rKolada/inst/doc/a-quickstart-rkolada.html | 133 ++- rKolada-0.3.1/rKolada/inst/doc/introduction-to-rkolada.R | 60 - rKolada-0.3.1/rKolada/inst/doc/introduction-to-rkolada.Rmd | 108 +- rKolada-0.3.1/rKolada/inst/doc/introduction-to-rkolada.html | 440 ++++++------ rKolada-0.3.1/rKolada/man/allowed_entities.Rd | 2 rKolada-0.3.1/rKolada/man/compose_data_query.Rd | 2 rKolada-0.3.1/rKolada/man/compose_metadata_query.Rd | 4 rKolada-0.3.1/rKolada/man/generate_kpi_metadata.Rd | 1 rKolada-0.3.1/rKolada/man/get_kpi.Rd | 10 rKolada-0.3.1/rKolada/man/get_metadata.Rd | 14 rKolada-0.3.1/rKolada/man/get_values.Rd | 2 rKolada-0.3.1/rKolada/man/kolada_available.Rd | 7 rKolada-0.3.1/rKolada/man/kolada_cache_dir.Rd |only rKolada-0.3.1/rKolada/man/kolada_clear_cache.Rd |only rKolada-0.3.1/rKolada/man/kpi_bind_keywords.Rd | 4 rKolada-0.3.1/rKolada/man/kpi_extract_ids.Rd | 6 rKolada-0.3.1/rKolada/man/kpi_grp_extract_ids.Rd | 2 rKolada-0.3.1/rKolada/man/kpi_grp_search.Rd | 8 rKolada-0.3.1/rKolada/man/kpi_grp_unnest.Rd | 10 rKolada-0.3.1/rKolada/man/kpi_minimize.Rd | 2 rKolada-0.3.1/rKolada/man/kpi_search.Rd | 8 rKolada-0.3.1/rKolada/man/municipality_extract_ids.Rd | 4 rKolada-0.3.1/rKolada/man/municipality_grp_extract_ids.Rd | 2 rKolada-0.3.1/rKolada/man/municipality_grp_unnest.Rd | 10 rKolada-0.3.1/rKolada/man/municipality_id_to_name.Rd | 8 rKolada-0.3.1/rKolada/man/municipality_name_to_id.Rd | 10 rKolada-0.3.1/rKolada/man/municipality_search.Rd | 4 rKolada-0.3.1/rKolada/man/ou_search.Rd | 6 rKolada-0.3.1/rKolada/man/values_legend.Rd | 4 rKolada-0.3.1/rKolada/man/values_minimize.Rd | 4 rKolada-0.3.1/rKolada/vignettes/a-quickstart-rkolada.Rmd | 61 + rKolada-0.3.1/rKolada/vignettes/introduction-to-rkolada.Rmd | 108 +- 56 files changed, 1161 insertions(+), 941 deletions(-)
Title: Rocket-Fast Clinical Research Reporting
Description: Description of the tables, both grouped and not grouped, with some associated data management actions,
such as sorting the terms of the variables and deleting terms with zero numbers.
Author: USMR CHU de Bordeaux [aut, cre],
Valentine Renaudeau [aut],
Marion Kret [aut],
Matisse Decilap [aut],
Sahardid Mohamed Houssein [aut],
Thomas Ferte [aut]
Maintainer: USMR CHU de Bordeaux <astreinte.usmr@chu-bordeaux.fr>
Diff between RastaRocket versions 1.1.2 dated 2026-02-26 and 1.1.3 dated 2026-03-23
DESCRIPTION | 11 MD5 | 40 - NAMESPACE | 1 NEWS.md | 18 R/base_table.R | 6 R/desc_ei_per_grade.R | 54 + R/desc_ei_per_pt.R | 33 R/desc_var_function.R | 28 R/df_builder_ae.R | 10 R/prepare_table.R | 26 inst/doc/DescribeAE.html | 480 ++++++------ inst/doc/RastaRocketVignette.R | 46 - inst/doc/RastaRocketVignette.Rmd | 55 - inst/doc/RastaRocketVignette.html | 1440 +++++++++++++++++++++++++------------- inst/doc/SetupProject.html | 4 man/base_table.Rd | 5 man/desc_ei_per_grade.Rd | 5 man/desc_ei_per_grade_df_to_gt.Rd | 4 man/desc_var.Rd | 25 man/prepare_table.Rd | 3 vignettes/RastaRocketVignette.Rmd | 55 - 21 files changed, 1468 insertions(+), 881 deletions(-)
Title: Models for Non Linear Causality Detection in Time Series
Description: Models for non-linear time series analysis and causality detection. The main functionalities of this package consist of an implementation of the classical causality test (C.W.J.Granger 1980) <doi:10.1016/0165-1889(80)90069-X>, and a non-linear version of it based on feed-forward neural networks. This package contains also an implementation of the Transfer Entropy <doi:10.1103/PhysRevLett.85.461>, and the continuous Transfer Entropy using an approximation based on the k-nearest neighbors <doi:10.1103/PhysRevE.69.066138>. There are also some other useful tools, like the VARNN (Vector Auto-Regressive Neural Network) prediction model, the Augmented test of stationarity, and the discrete and continuous entropy and mutual information.
Author: Youssef Hmamouche [aut, cre]
Maintainer: Youssef Hmamouche <hmamoucheyussef@gmail.com>
Diff between NlinTS versions 1.4.6 dated 2025-12-16 and 1.4.7 dated 2026-03-23
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- R/modules.R | 42 +++++++++++++++++++++--------------------- build/partial.rdb |binary man/entropy_cont.Rd | 4 ++-- man/entropy_disc.Rd | 2 +- man/mi_cont.Rd | 2 +- man/mi_disc.Rd | 2 +- man/mi_disc_bi.Rd | 2 +- man/nlin_causality.test.Rd | 6 +++--- man/te_cont.Rd | 4 ++-- man/te_disc.Rd | 8 ++++---- man/varmlp.Rd | 12 ++++++------ src/nsEntropy.cpp | 23 +++++++++++------------ 14 files changed, 70 insertions(+), 71 deletions(-)
More information about MultiResponseR at CRAN
Permanent link
Title: Correlation-Based and Model-Based Predictor Pruning
Description: Provides functions for predictor pruning using association-based and model-based approaches. Includes corrPrune() for fast correlation-based pruning, modelPrune() for VIF-based regression pruning, and exact graph-theoretic algorithms (Eppstein–Löffler–Strash, Bron–Kerbosch) for exhaustive subset enumeration. Supports linear models, GLMs, and mixed models ('lme4', 'glmmTMB').
Author: Gilles Colling [aut, cre, cph]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between corrselect versions 3.1.0 dated 2026-01-08 and 3.2.1 dated 2026-03-23
corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-10_0261995cd92081c15ad387c7745b2179.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-10_0261995cd92081c15ad387c7745b2179.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-10_0261995cd92081c15ad387c7745b2179.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-11_6ded452640799c65117b7aa86b1009ad.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-11_6ded452640799c65117b7aa86b1009ad.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-11_6ded452640799c65117b7aa86b1009ad.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-12_7cb82f5521a11911dc97809e40b2d6ad.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-12_7cb82f5521a11911dc97809e40b2d6ad.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-12_7cb82f5521a11911dc97809e40b2d6ad.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-13_a6cdd8bd99d2bf57a55f3ffc1fedd9a6.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-13_a6cdd8bd99d2bf57a55f3ffc1fedd9a6.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-13_a6cdd8bd99d2bf57a55f3ffc1fedd9a6.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-14_3660e599fac360a30cc0b4cfafbd75bd.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-14_3660e599fac360a30cc0b4cfafbd75bd.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-14_3660e599fac360a30cc0b4cfafbd75bd.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-15_198465f9e2f5d4981ce17767836a846b.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-15_198465f9e2f5d4981ce17767836a846b.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-15_198465f9e2f5d4981ce17767836a846b.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-16_f78ee2364588bda0b680cc376913e140.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-16_f78ee2364588bda0b680cc376913e140.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-16_f78ee2364588bda0b680cc376913e140.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-17_bb63e5b31d54878fa25f005fffc770d1.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-17_bb63e5b31d54878fa25f005fffc770d1.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-17_bb63e5b31d54878fa25f005fffc770d1.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-18_21be43a6a7fe73232c052646fed05e87.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-18_21be43a6a7fe73232c052646fed05e87.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-18_21be43a6a7fe73232c052646fed05e87.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-19_71e16b0fd8b5cc0853e33be2188d3710.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-19_71e16b0fd8b5cc0853e33be2188d3710.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-19_71e16b0fd8b5cc0853e33be2188d3710.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-1_cecd90e0a9c7ba125cca710771184db7.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-1_cecd90e0a9c7ba125cca710771184db7.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-1_cecd90e0a9c7ba125cca710771184db7.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-20_0246b2cf80adcd5e929a405a39ff7e6f.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-20_0246b2cf80adcd5e929a405a39ff7e6f.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-20_0246b2cf80adcd5e929a405a39ff7e6f.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-21_17ab8d8134fe4601d02cc1cdc39470ed.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-21_17ab8d8134fe4601d02cc1cdc39470ed.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-21_17ab8d8134fe4601d02cc1cdc39470ed.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-22_df7ae95d2729e2421401db338610c69c.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-22_df7ae95d2729e2421401db338610c69c.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-22_df7ae95d2729e2421401db338610c69c.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-23_91b640ab37b91e198d8f8b35ab74f7fd.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-23_91b640ab37b91e198d8f8b35ab74f7fd.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-23_91b640ab37b91e198d8f8b35ab74f7fd.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-24_b4ebc143b64fbefe900cd84f20a0164c.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-24_b4ebc143b64fbefe900cd84f20a0164c.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-24_b4ebc143b64fbefe900cd84f20a0164c.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-2_cd4898f9febd142781216c357528ab42.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-2_cd4898f9febd142781216c357528ab42.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-2_cd4898f9febd142781216c357528ab42.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-3_2998d1cdf75c8ae9847131903349ed16.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-3_2998d1cdf75c8ae9847131903349ed16.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-3_2998d1cdf75c8ae9847131903349ed16.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-4_8e671d409df5c92d42553f08e2d017d6.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-4_8e671d409df5c92d42553f08e2d017d6.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-4_8e671d409df5c92d42553f08e2d017d6.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-5_d6cb6bb3b89156ecce84fbcfe708c366.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-5_d6cb6bb3b89156ecce84fbcfe708c366.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-5_d6cb6bb3b89156ecce84fbcfe708c366.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-6_84601bfa55ac5e71844bf17679830141.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-6_84601bfa55ac5e71844bf17679830141.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-6_84601bfa55ac5e71844bf17679830141.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-7_a9914ff4b4e85b56568e1921ca98fbae.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-7_a9914ff4b4e85b56568e1921ca98fbae.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-7_a9914ff4b4e85b56568e1921ca98fbae.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-8_3e9ab08ad4ca7e9791b8ea4c27a151a9.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-8_3e9ab08ad4ca7e9791b8ea4c27a151a9.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-8_3e9ab08ad4ca7e9791b8ea4c27a151a9.rdx |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-9_1a18bd9a0c2a48e506992700711c93b7.RData |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-9_1a18bd9a0c2a48e506992700711c93b7.rdb |only corrselect-3.1.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-9_1a18bd9a0c2a48e506992700711c93b7.rdx |only corrselect-3.2.1/corrselect/DESCRIPTION | 15 corrselect-3.2.1/corrselect/MD5 | 223 corrselect-3.2.1/corrselect/NAMESPACE | 13 corrselect-3.2.1/corrselect/NEWS.md | 18 corrselect-3.2.1/corrselect/R/CorrCombo.R | 427 - corrselect-3.2.1/corrselect/R/MatSelect.R | 9 corrselect-3.2.1/corrselect/R/assocSelect.R | 5 corrselect-3.2.1/corrselect/R/corrSelect.R | 3 corrselect-3.2.1/corrselect/R/corrSubset.R | 12 corrselect-3.2.1/corrselect/R/corrselect-package.R | 2 corrselect-3.2.1/corrselect/R/zzz.R |only corrselect-3.2.1/corrselect/README.md | 32 corrselect-3.2.1/corrselect/inst/doc/advanced.Rmd | 60 corrselect-3.2.1/corrselect/inst/doc/advanced.html | 350 corrselect-3.2.1/corrselect/inst/doc/comparison.R | 140 corrselect-3.2.1/corrselect/inst/doc/comparison.Rmd | 1211 +-- corrselect-3.2.1/corrselect/inst/doc/comparison.html | 209 corrselect-3.2.1/corrselect/inst/doc/quickstart.Rmd | 29 corrselect-3.2.1/corrselect/inst/doc/quickstart.html | 199 corrselect-3.2.1/corrselect/inst/doc/theory.Rmd | 3112 ++++--- corrselect-3.2.1/corrselect/inst/doc/theory.html | 772 - corrselect-3.2.1/corrselect/inst/doc/workflows.Rmd | 1771 ++-- corrselect-3.2.1/corrselect/inst/doc/workflows.html | 224 corrselect-3.2.1/corrselect/man/CorrCombo.Rd | 84 corrselect-3.2.1/corrselect/man/assocSelect.Rd | 2 corrselect-3.2.1/corrselect/man/corrSubset.Rd | 6 corrselect-3.2.1/corrselect/man/corrselect-package.Rd | 4 corrselect-3.2.1/corrselect/tests/testthat/test-CorrCombo.R | 990 +- corrselect-3.2.1/corrselect/tests/testthat/test-assocSelect.R | 2644 +++--- corrselect-3.2.1/corrselect/tests/testthat/test-corrMatSelect-bron-kerbosch.R | 12 corrselect-3.2.1/corrselect/tests/testthat/test-corrMatSelect-els.R | 16 corrselect-3.2.1/corrselect/tests/testthat/test-corrPrune.R | 3240 ++++---- corrselect-3.2.1/corrselect/tests/testthat/test-corrSelect.R | 1906 ++-- corrselect-3.2.1/corrselect/tests/testthat/test-corrSubset.R | 360 corrselect-3.2.1/corrselect/tests/testthat/test-modelPrune.R | 3910 +++++----- corrselect-3.2.1/corrselect/vignettes/advanced.Rmd | 60 corrselect-3.2.1/corrselect/vignettes/comparison.Rmd | 1211 +-- corrselect-3.2.1/corrselect/vignettes/quickstart.Rmd | 29 corrselect-3.2.1/corrselect/vignettes/theory.Rmd | 3112 ++++--- corrselect-3.2.1/corrselect/vignettes/workflows.Rmd | 1771 ++-- corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/__packages | 2 corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-10_d03fc2cda825d5f2289da9a08c1cd689.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-10_d03fc2cda825d5f2289da9a08c1cd689.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-10_d03fc2cda825d5f2289da9a08c1cd689.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-11_f1bf4e598bd4368377e5ed5eb523ef5e.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-11_f1bf4e598bd4368377e5ed5eb523ef5e.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-11_f1bf4e598bd4368377e5ed5eb523ef5e.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-12_035c4bf95a2ffcbd067864ea48440ac0.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-12_035c4bf95a2ffcbd067864ea48440ac0.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-12_035c4bf95a2ffcbd067864ea48440ac0.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-13_1a99028e9af36e8443ca41e7d2408f24.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-13_1a99028e9af36e8443ca41e7d2408f24.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-13_1a99028e9af36e8443ca41e7d2408f24.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-14_5f30eb94f5c16d0a7900c3249504227b.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-14_5f30eb94f5c16d0a7900c3249504227b.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-14_5f30eb94f5c16d0a7900c3249504227b.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-15_7970b32cf1a7005d13e4ff78cc5cf0fa.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-15_7970b32cf1a7005d13e4ff78cc5cf0fa.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-15_7970b32cf1a7005d13e4ff78cc5cf0fa.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-16_ff8c42d0efe6b56e9bfbc41c1a2c5aba.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-16_ff8c42d0efe6b56e9bfbc41c1a2c5aba.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-16_ff8c42d0efe6b56e9bfbc41c1a2c5aba.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-17_d3c52f0835d874003a8be81c75e3f905.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-17_d3c52f0835d874003a8be81c75e3f905.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-17_d3c52f0835d874003a8be81c75e3f905.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-18_972ce2dbf8ba8db1672407054a9b135b.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-18_972ce2dbf8ba8db1672407054a9b135b.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-18_972ce2dbf8ba8db1672407054a9b135b.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-19_21ffd753b06612c6e7870f6d41826409.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-19_21ffd753b06612c6e7870f6d41826409.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-19_21ffd753b06612c6e7870f6d41826409.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-1_a7eb25aba8f037f9fb7f230751b9095c.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-1_a7eb25aba8f037f9fb7f230751b9095c.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-1_a7eb25aba8f037f9fb7f230751b9095c.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-20_ac9499793ffa24b9cb0e4ebaf015042c.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-20_ac9499793ffa24b9cb0e4ebaf015042c.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-20_ac9499793ffa24b9cb0e4ebaf015042c.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-21_15207d8fda619a5a064824eb5c0cb441.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-21_15207d8fda619a5a064824eb5c0cb441.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-21_15207d8fda619a5a064824eb5c0cb441.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-22_9d504a397458de64b03c58204b7855eb.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-22_9d504a397458de64b03c58204b7855eb.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-22_9d504a397458de64b03c58204b7855eb.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-23_333371836bfe27b101297154992afdda.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-23_333371836bfe27b101297154992afdda.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-23_333371836bfe27b101297154992afdda.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-24_430b27ac048c741c5c2e2e75d5e964b9.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-24_430b27ac048c741c5c2e2e75d5e964b9.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-24_430b27ac048c741c5c2e2e75d5e964b9.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-2_28f6af1b9d58c0079b53643dace2d712.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-2_28f6af1b9d58c0079b53643dace2d712.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-2_28f6af1b9d58c0079b53643dace2d712.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-3_7cfe9ff10d95eaad40bec256ab077510.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-3_7cfe9ff10d95eaad40bec256ab077510.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-3_7cfe9ff10d95eaad40bec256ab077510.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-4_28611df42bdb587fed363674106af924.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-4_28611df42bdb587fed363674106af924.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-4_28611df42bdb587fed363674106af924.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-5_86ddd9048fc467d655181b057d2ee514.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-5_86ddd9048fc467d655181b057d2ee514.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-5_86ddd9048fc467d655181b057d2ee514.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-6_252ec315ebe5e27c02747ca5dc54bc35.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-6_252ec315ebe5e27c02747ca5dc54bc35.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-6_252ec315ebe5e27c02747ca5dc54bc35.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-7_d377bfcce8392e7c6083c193677debeb.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-7_d377bfcce8392e7c6083c193677debeb.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-7_d377bfcce8392e7c6083c193677debeb.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-8_012d8298dbc7a53ee4f92e36ab242f7a.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-8_012d8298dbc7a53ee4f92e36ab242f7a.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-8_012d8298dbc7a53ee4f92e36ab242f7a.rdx |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-9_b5cf8b0ac7a4c75146c42933a356347d.RData |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-9_b5cf8b0ac7a4c75146c42933a356347d.rdb |only corrselect-3.2.1/corrselect/vignettes/workflows_cache/html/unnamed-chunk-9_b5cf8b0ac7a4c75146c42933a356347d.rdx |only 185 files changed, 14384 insertions(+), 13811 deletions(-)
Title: Template Model Builder: A General Random Effect Tool Inspired by
'ADMB'
Description: With this tool, a user should be able to quickly implement
complex random effect models through simple C++ templates. The package combines
'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector
library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain
an efficient implementation of the applied Laplace approximation with exact
derivatives. Key features are: Automatic sparseness detection, parallelism
through 'BLAS' and parallel user templates.
Author: Kasper Kristensen [aut, cre, cph],
Brad Bell [cph],
Hans Skaug [ctb],
Arni Magnusson [ctb],
Casper Berg [ctb],
Anders Nielsen [ctb],
Martin Maechler [ctb],
Theo Michelot [ctb],
Mollie Brooks [ctb],
Alex Forrence [ctb],
Christoffer Moesgaard Albertsen [...truncated...]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between TMB versions 1.9.20 dated 2026-03-17 and 1.9.21 dated 2026-03-23
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NEWS | 9 +++++++++ R/TMB.R | 2 ++ R/sdreport.R | 4 ++-- R/validation.R | 2 +- R/zzz.R | 5 ----- man/FreeADFun.Rd | 2 ++ man/oneStepPredict.Rd | 2 +- man/sdreport.Rd | 4 ++-- 10 files changed, 33 insertions(+), 25 deletions(-)
Title: Descriptive Statistics and Data Management Tools
Description: Provides tools for descriptive data analysis,
variable inspection, and quick tabulation workflows in 'R'. Summarizes
variable metadata, labels, classes, missing values, and representative
values, with support for readable frequency tables, cross-tabulations,
association measures for contingency tables (Cramer's V, Phi,
Goodman-Kruskal Gamma, Kendall's Tau-b, Somers' D, and others),
and APA-style reporting tables. Includes helpers for interactive
codebooks, variable label extraction, clipboard export, and row-wise
descriptive summaries. Designed to make descriptive analysis faster,
clearer, and easier to work with in practice.
Author: Amal Tawfik [aut, cre, cph]
Maintainer: Amal Tawfik <amal.tawfik@hesav.ch>
Diff between spicy versions 0.5.0 dated 2026-03-14 and 0.6.0 dated 2026-03-23
spicy-0.5.0/spicy/R/cramer_v.R |only spicy-0.6.0/spicy/DESCRIPTION | 18 spicy-0.6.0/spicy/MD5 | 113 +-- spicy-0.6.0/spicy/NAMESPACE | 15 spicy-0.6.0/spicy/NEWS.md | 40 + spicy-0.6.0/spicy/R/assoc.R |only spicy-0.6.0/spicy/R/code_book.R | 5 spicy-0.6.0/spicy/R/copy_clipboard.R | 13 spicy-0.6.0/spicy/R/count_n.R | 63 + spicy-0.6.0/spicy/R/cross_tab.R | 440 ++++++------ spicy-0.6.0/spicy/R/data.R |only spicy-0.6.0/spicy/R/freq.R | 74 +- spicy-0.6.0/spicy/R/freq_print.R | 12 spicy-0.6.0/spicy/R/globals.R | 3 spicy-0.6.0/spicy/R/label_from_names.R | 3 spicy-0.6.0/spicy/R/mean_n.R | 30 spicy-0.6.0/spicy/R/spicy-package.R | 1 spicy-0.6.0/spicy/R/sum_n.R | 30 spicy-0.6.0/spicy/R/table_apa.R | 543 ++++++++++++--- spicy-0.6.0/spicy/R/tables_ascii.R | 2 spicy-0.6.0/spicy/R/varlist.R | 58 - spicy-0.6.0/spicy/README.md | 439 ++++-------- spicy-0.6.0/spicy/build |only spicy-0.6.0/spicy/data |only spicy-0.6.0/spicy/inst/doc |only spicy-0.6.0/spicy/man/assoc_measures.Rd |only spicy-0.6.0/spicy/man/build_ascii_table.Rd | 2 spicy-0.6.0/spicy/man/code_book.Rd | 5 spicy-0.6.0/spicy/man/contingency_coef.Rd |only spicy-0.6.0/spicy/man/copy_clipboard.Rd | 8 spicy-0.6.0/spicy/man/cramer_v.Rd | 74 +- spicy-0.6.0/spicy/man/cross_tab.Rd | 48 - spicy-0.6.0/spicy/man/figures/animation_varlist.gif |only spicy-0.6.0/spicy/man/freq.Rd | 6 spicy-0.6.0/spicy/man/gamma_gk.Rd |only spicy-0.6.0/spicy/man/goodman_kruskal_tau.Rd |only spicy-0.6.0/spicy/man/kendall_tau_b.Rd |only spicy-0.6.0/spicy/man/kendall_tau_c.Rd |only spicy-0.6.0/spicy/man/lambda_gk.Rd |only spicy-0.6.0/spicy/man/phi.Rd |only spicy-0.6.0/spicy/man/print.spicy_assoc_detail.Rd |only spicy-0.6.0/spicy/man/print.spicy_assoc_table.Rd |only spicy-0.6.0/spicy/man/print.spicy_freq_table.Rd | 2 spicy-0.6.0/spicy/man/sochealth.Rd |only spicy-0.6.0/spicy/man/somers_d.Rd |only spicy-0.6.0/spicy/man/spicy-package.Rd | 2 spicy-0.6.0/spicy/man/table_apa.Rd | 86 +- spicy-0.6.0/spicy/man/uncertainty_coef.Rd |only spicy-0.6.0/spicy/man/varlist.Rd | 24 spicy-0.6.0/spicy/man/yule_q.Rd |only spicy-0.6.0/spicy/tests/testthat/test-assoc.R |only spicy-0.6.0/spicy/tests/testthat/test-code_book.R | 47 + spicy-0.6.0/spicy/tests/testthat/test-count_n.R | 38 + spicy-0.6.0/spicy/tests/testthat/test-cramer_v.R | 29 spicy-0.6.0/spicy/tests/testthat/test-cross_tab.R | 404 +++++++++++ spicy-0.6.0/spicy/tests/testthat/test-freq.R | 156 ++++ spicy-0.6.0/spicy/tests/testthat/test-freq_print.R | 8 spicy-0.6.0/spicy/tests/testthat/test-label_from_names.R | 8 spicy-0.6.0/spicy/tests/testthat/test-mean_n.R | 44 + spicy-0.6.0/spicy/tests/testthat/test-sum_n.R | 44 + spicy-0.6.0/spicy/tests/testthat/test-table_apa.R | 525 ++++++++++++++ spicy-0.6.0/spicy/tests/testthat/test-tables_ascii.R | 12 spicy-0.6.0/spicy/tests/testthat/test-varlist.R | 205 +++++ spicy-0.6.0/spicy/vignettes |only 64 files changed, 2855 insertions(+), 824 deletions(-)
Title: Geometrical Functionality of the 'spatstat' Family
Description: Defines spatial data types and supports geometrical operations
on them. Data types include point patterns, windows (domains),
pixel images, line segment patterns, tessellations and hyperframes.
Capabilities include creation and manipulation of data
(using command line or graphical interaction),
plotting, geometrical operations (rotation, shift, rescale,
affine transformation), convex hull, discretisation and
pixellation, Dirichlet tessellation, Delaunay triangulation,
pairwise distances, nearest-neighbour distances,
distance transform, morphological operations
(erosion, dilation, closing, opening), quadrat counting,
geometrical measurement, geometrical covariance,
colour maps, calculus on spatial domains,
Gaussian blur, level sets of images, transects of images,
intersections between objects, minimum distance matching.
(Excludes spatial data on a network, which are supported by
the package 'spatstat.linnet'.)
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Warick Brown [ctb],
Tilman Davies [ctb],
Ute Hahn [ctb],
Martin Hazelton [ctb],
Abdollah Jalilian [ctb],
Greg McSwiggan [ctb, cph],
Sebastian Meyer [ctb, cph],
Jens Oeh [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.geom versions 3.7-2 dated 2026-03-21 and 3.7-3 dated 2026-03-23
DESCRIPTION | 8 +++---- MD5 | 12 +++++------ NEWS | 16 +++++++++++++++ inst/doc/packagesizes.txt | 2 - inst/info/packagesizes.txt | 2 - src/exactdist.c | 6 ++--- tests/testsNtoO.R | 47 +++++++++++++++++++++++++++++++++------------ 7 files changed, 66 insertions(+), 27 deletions(-)
Title: Election Vote Counting with Safety Features
Description: Fork of 'vote_2.3-2', Raftery et al. (2021)
<DOI:10.32614/RJ-2021-086>, with additional support
for stochastic experimentation.
Author: Clark Thomborson [cre, aut]
Maintainer: Clark Thomborson <c.thomborson@auckland.ac.nz>
Diff between SafeVote versions 1.0.1 dated 2024-10-05 and 1.0.2 dated 2026-03-23
SafeVote-1.0.1/SafeVote/NEWS.md |only SafeVote-1.0.1/SafeVote/man/view.Rd |only SafeVote-1.0.2/SafeVote/ChangeLog |only SafeVote-1.0.2/SafeVote/DESCRIPTION | 16 SafeVote-1.0.2/SafeVote/MD5 | 110 +++-- SafeVote-1.0.2/SafeVote/NAMESPACE | 106 ++--- SafeVote-1.0.2/SafeVote/R/check_votes.R | 22 + SafeVote-1.0.2/SafeVote/R/condorcet.R | 2 SafeVote-1.0.2/SafeVote/R/data.R | 156 ++++---- SafeVote-1.0.2/SafeVote/R/saferank.R | 34 - SafeVote-1.0.2/SafeVote/R/stv.R | 92 ++-- SafeVote-1.0.2/SafeVote/R/vote_by_sum.R | 2 SafeVote-1.0.2/SafeVote/README.md | 146 +++++-- SafeVote-1.0.2/SafeVote/build/partial.rdb |binary SafeVote-1.0.2/SafeVote/data/auckland2022.rda |only SafeVote-1.0.2/SafeVote/data/dublin_west_vote_count.rda |only SafeVote-1.0.2/SafeVote/data/dublin_west_vote_count_3seats.rda |only SafeVote-1.0.2/SafeVote/data/gisborne2022.rda |only SafeVote-1.0.2/SafeVote/data/gisborne2022analysis.rda |only SafeVote-1.0.2/SafeVote/data/hamilton2022.rda |only SafeVote-1.0.2/SafeVote/data/hamilton2022analysis.rda |only SafeVote-1.0.2/SafeVote/data/wellington2022analysis.rda |only SafeVote-1.0.2/SafeVote/man/SafeVote-package.Rd | 1 SafeVote-1.0.2/SafeVote/man/a3_hil.Rd | 60 +-- SafeVote-1.0.2/SafeVote/man/a4_hil.Rd | 52 +- SafeVote-1.0.2/SafeVote/man/a53_hil.Rd | 2 SafeVote-1.0.2/SafeVote/man/as.SafeRankExpt.Rd | 34 - SafeVote-1.0.2/SafeVote/man/auckland2022.Rd |only SafeVote-1.0.2/SafeVote/man/dublin_west.Rd | 2 SafeVote-1.0.2/SafeVote/man/dublin_west_vote_count.Rd |only SafeVote-1.0.2/SafeVote/man/dublin_west_vote_count_3seats.Rd |only SafeVote-1.0.2/SafeVote/man/extractMargins.Rd | 50 +- SafeVote-1.0.2/SafeVote/man/figures/README-yaleHare-1.png |only SafeVote-1.0.2/SafeVote/man/figures/README-yaleHare-2.png |only SafeVote-1.0.2/SafeVote/man/food_election.Rd | 2 SafeVote-1.0.2/SafeVote/man/gisborne2022.Rd |only SafeVote-1.0.2/SafeVote/man/gisborne2022analysis.Rd |only SafeVote-1.0.2/SafeVote/man/hamilton2022.Rd |only SafeVote-1.0.2/SafeVote/man/hamilton2022analysis.Rd |only SafeVote-1.0.2/SafeVote/man/ims_approval.Rd | 2 SafeVote-1.0.2/SafeVote/man/ims_election.Rd | 2 SafeVote-1.0.2/SafeVote/man/ims_plurality.Rd | 2 SafeVote-1.0.2/SafeVote/man/ims_score.Rd | 2 SafeVote-1.0.2/SafeVote/man/ims_stv.Rd | 2 SafeVote-1.0.2/SafeVote/man/invalid.votes.Rd | 40 +- SafeVote-1.0.2/SafeVote/man/is.SafeRankExpt.Rd | 34 - SafeVote-1.0.2/SafeVote/man/new_SafeRankExpt.Rd | 99 ++--- SafeVote-1.0.2/SafeVote/man/plot.SafeRankExpt.Rd | 190 +++++----- SafeVote-1.0.2/SafeVote/man/print.summary.SafeRankExpt.Rd | 38 +- SafeVote-1.0.2/SafeVote/man/rbind_SafeRankExpt.Rd | 4 SafeVote-1.0.2/SafeVote/man/readHil.Rd | 64 +-- SafeVote-1.0.2/SafeVote/man/stv.Rd | 9 SafeVote-1.0.2/SafeVote/man/summary.SafeRankExpt.Rd | 38 +- SafeVote-1.0.2/SafeVote/man/testAdditions.Rd | 12 SafeVote-1.0.2/SafeVote/man/testDeletions.Rd | 7 SafeVote-1.0.2/SafeVote/man/testFraction.Rd | 6 SafeVote-1.0.2/SafeVote/man/uk_labour_2010.Rd | 40 +- SafeVote-1.0.2/SafeVote/man/view.SafeVote.Rd |only SafeVote-1.0.2/SafeVote/man/view.SafeVote.approval.Rd | 34 - SafeVote-1.0.2/SafeVote/man/view.SafeVote.condorcet.Rd | 38 +- SafeVote-1.0.2/SafeVote/man/view.SafeVote.plurality.Rd | 34 - SafeVote-1.0.2/SafeVote/man/view.SafeVote.score.Rd | 2 SafeVote-1.0.2/SafeVote/man/view.SafeVote.stv.Rd | 38 +- SafeVote-1.0.2/SafeVote/man/wellington2022analysis.Rd |only SafeVote-1.0.2/SafeVote/man/yale_ballots.Rd | 40 +- SafeVote-1.0.2/SafeVote/tests/testthat.R | 24 - SafeVote-1.0.2/SafeVote/tests/testthat/test-stv-regress.R | 23 - 67 files changed, 922 insertions(+), 791 deletions(-)
Title: Graphic Devices Based on AGG
Description: Anti-Grain Geometry (AGG) is a high-quality and
high-performance 2D drawing library. The 'ragg' package provides a set
of graphic devices based on AGG to use as alternative to the raster
devices provided through the 'grDevices' package.
Author: Thomas Lin Pedersen [cre, aut] ,
Maxim Shemanarev [aut, cph] ,
Tony Juricic [ctb, cph] ,
Milan Marusinec [ctb, cph] ,
Spencer Garrett [ctb] ,
Posit Software, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between ragg versions 1.5.1 dated 2026-03-06 and 1.5.2 dated 2026-03-23
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ src/AggDevice.h | 1 + src/record_dev.cpp | 5 ----- 5 files changed, 12 insertions(+), 12 deletions(-)
Title: Creation of Mock Observational Medical Outcomes Partnership
Common Data Model
Description: Creates mock data for testing and package development for the
Observational Medical Outcomes Partnership common data model. The
package offers functions crafted with pipeline-friendly
implementation, enabling users to effortlessly include only the
necessary tables for their testing needs.
Author: Mike Du [aut, cre] ,
Marti Catala [aut] ,
Edward Burn [aut] ,
Nuria Mercade-Besora [aut] ,
Xihang Chen [aut]
Maintainer: Mike Du <mike.du@ndorms.ox.ac.uk>
Diff between omock versions 0.6.1 dated 2026-02-03 and 0.6.2 dated 2026-03-23
DESCRIPTION | 6 MD5 | 46 ++-- NEWS.md | 118 ++++++----- R/mockDatasets.R | 5 README.md | 12 - build/vignette.rds |binary data/mockDatasets.rda |binary inst/doc/mock_from_tables.html | 49 ++-- inst/doc/synthetic_clinical_tables.Rmd | 2 inst/doc/synthetic_clinical_tables.html | 23 +- inst/doc/synthetic_cohorts.Rmd | 2 inst/doc/synthetic_cohorts.html | 9 inst/doc/synthetic_datasets.Rmd | 2 inst/doc/synthetic_datasets.html | 180 +++++++++--------- inst/doc/synthetic_vocabulary.Rmd | 2 inst/doc/synthetic_vocabulary.html | 10 - vignettes/a01_Creating_synthetic_clinical_tables.R |only vignettes/a01_Creating_synthetic_clinical_tables.html |only vignettes/a02_Creating_synthetic_cohorts.R |only vignettes/a02_Creating_synthetic_cohorts.html |only vignettes/a03_Creating_a_synthetic_vocabulary.R |only vignettes/a03_Creating_a_synthetic_vocabulary.html |only vignettes/a04_Building_a_bespoke_mock_cdm.R |only vignettes/a04_Building_a_bespoke_mock_cdm.html |only vignettes/synthetic_clinical_tables.Rmd | 2 vignettes/synthetic_cohorts.Rmd | 2 vignettes/synthetic_datasets.Rmd | 2 vignettes/synthetic_vocabulary.Rmd | 2 28 files changed, 251 insertions(+), 223 deletions(-)
Title: Synthesise and Correlate Likert Scale and Rating-Scale Data
Based on Summary Statistics
Description: Generate and correlate synthetic Likert and rating-scale
questionnaire responses with predefined means, standard deviations,
Cronbach's Alpha, Factor Loading table, coefficients, and other summary
statistics.
It can be used to simulate Likert data, construct multi-item scales,
generate correlation matrices, and create example survey datasets for
teaching statistics, psychometrics, and methodological research.
Worked examples and documentation are available in the package
articles, accessible via the package website,
<https://winzarh.github.io/LikertMakeR/>.
Author: Hume Winzar [cre, aut]
Maintainer: Hume Winzar <winzar@gmail.com>
Diff between LikertMakeR versions 1.4.0 dated 2026-02-11 and 2.0.0 dated 2026-03-23
LikertMakeR-1.4.0/LikertMakeR/inst/doc/lfast_infographic.R |only LikertMakeR-1.4.0/LikertMakeR/inst/doc/lfast_infographic.Rmd |only LikertMakeR-1.4.0/LikertMakeR/inst/doc/lfast_infographic.html |only LikertMakeR-1.4.0/LikertMakeR/inst/pkgdown |only LikertMakeR-1.4.0/LikertMakeR/vignettes/img/lfast_infographic_t.png |only LikertMakeR-1.4.0/LikertMakeR/vignettes/lfast_infographic.Rmd |only LikertMakeR-2.0.0/LikertMakeR/.Rinstignore | 2 LikertMakeR-2.0.0/LikertMakeR/DESCRIPTION | 28 LikertMakeR-2.0.0/LikertMakeR/MD5 | 82 LikertMakeR-2.0.0/LikertMakeR/NAMESPACE | 7 LikertMakeR-2.0.0/LikertMakeR/NEWS.md | 107 LikertMakeR-2.0.0/LikertMakeR/R/alpha.R | 30 LikertMakeR-2.0.0/LikertMakeR/R/alpha_sensitivity.R |only LikertMakeR-2.0.0/LikertMakeR/R/correlateScales.R | 2 LikertMakeR-2.0.0/LikertMakeR/R/makeCorrAlpha.R | 656 - LikertMakeR-2.0.0/LikertMakeR/R/makeCorrLoadings.R | 6 LikertMakeR-2.0.0/LikertMakeR/R/makeItemsScale.R | 323 LikertMakeR-2.0.0/LikertMakeR/R/makePaired.R | 9 LikertMakeR-2.0.0/LikertMakeR/R/makeRepeated.R | 4 LikertMakeR-2.0.0/LikertMakeR/R/makeScales.R | 5 LikertMakeR-2.0.0/LikertMakeR/R/makeScalesRegression.R | 1141 +- LikertMakeR-2.0.0/LikertMakeR/R/reliability.R | 2 LikertMakeR-2.0.0/LikertMakeR/README.md | 26 LikertMakeR-2.0.0/LikertMakeR/build/vignette.rds |binary LikertMakeR-2.0.0/LikertMakeR/inst/WORDLIST | 217 LikertMakeR-2.0.0/LikertMakeR/inst/doc/LikertMakeR_vignette.R | 53 LikertMakeR-2.0.0/LikertMakeR/inst/doc/LikertMakeR_vignette.Rmd | 3914 ++++------ LikertMakeR-2.0.0/LikertMakeR/inst/doc/LikertMakeR_vignette.html | 2598 ++---- LikertMakeR-2.0.0/LikertMakeR/inst/doc/reliability_measures.R | 7 LikertMakeR-2.0.0/LikertMakeR/inst/doc/reliability_measures.Rmd | 1435 +-- LikertMakeR-2.0.0/LikertMakeR/inst/doc/reliability_measures.html | 55 LikertMakeR-2.0.0/LikertMakeR/man/alpha.Rd | 3 LikertMakeR-2.0.0/LikertMakeR/man/alpha_sensitivity.Rd |only LikertMakeR-2.0.0/LikertMakeR/man/makeCorrAlpha.Rd | 145 LikertMakeR-2.0.0/LikertMakeR/man/makeItemsScale.Rd | 176 LikertMakeR-2.0.0/LikertMakeR/man/makePaired.Rd | 9 LikertMakeR-2.0.0/LikertMakeR/man/makeScales.Rd | 9 LikertMakeR-2.0.0/LikertMakeR/man/print.makeScalesRegression.Rd | 1 LikertMakeR-2.0.0/LikertMakeR/man/reliability.Rd | 2 LikertMakeR-2.0.0/LikertMakeR/tests/testthat/test-alpha_sensitivity.R |only LikertMakeR-2.0.0/LikertMakeR/tests/testthat/test-makeCorrAlpha.R | 41 LikertMakeR-2.0.0/LikertMakeR/tests/testthat/test-reliability-basic.R | 75 LikertMakeR-2.0.0/LikertMakeR/tests/testthat/test-reliability-options.R | 94 LikertMakeR-2.0.0/LikertMakeR/vignettes/LikertMakeR_vignette.Rmd | 3914 ++++------ LikertMakeR-2.0.0/LikertMakeR/vignettes/img/dwevedi_model.png |only LikertMakeR-2.0.0/LikertMakeR/vignettes/img/flow_makeItemsScale.png |only LikertMakeR-2.0.0/LikertMakeR/vignettes/img/flow_rearrangeRowValues.png |only LikertMakeR-2.0.0/LikertMakeR/vignettes/preamble.tex |only LikertMakeR-2.0.0/LikertMakeR/vignettes/reliability_measures.Rmd | 1435 +-- 49 files changed, 8063 insertions(+), 8550 deletions(-)
Title: Helper Functions for Species Delimitation Analysis
Description: Helpers functions to process, analyse, and visualize the output of
single locus species delimitation methods.
For full functionality, please install suggested software at
<https://legallab.github.io/delimtools/articles/install.html>.
Author: Pedro Bittencourt [aut, cre, cph] ,
Rupert Collins [aut, ctb, cph] ,
Tomas Hrbek [aut, ctb]
Maintainer: Pedro Bittencourt <pedro.sennabittencourt@gmail.com>
This is a re-admission after prior archival of version 0.2.1 dated 2025-09-29
Diff between delimtools versions 0.2.1 dated 2025-09-29 and 0.2.2 dated 2026-03-23
delimtools-0.2.1/delimtools/vignettes/geophagus.abgd.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.disthist.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Histo.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.HistoCum.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_1.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_1.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_10.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_10.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_2.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_2.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_3.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_3.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_4.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_4.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_5.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_5.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_6.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_6.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_7.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_7.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_8.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_8.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_9.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_9.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.clado.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.curve.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.groups.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.spart |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.spart.xml |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.1.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.2.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.3.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.4.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.5.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.6.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.7.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.8.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.1.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.2.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.3.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.4.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.5.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.6.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.7.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.8.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.rank.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus_raxml.nwk.mptp.multi.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus_raxml.nwk.mptp.multi.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus_raxml.nwk.mptp.single.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus_raxml.nwk.mptp.single.txt |only delimtools-0.2.2/delimtools/DESCRIPTION | 8 delimtools-0.2.2/delimtools/MD5 | 93 ++-------- delimtools-0.2.2/delimtools/NEWS.md | 4 delimtools-0.2.2/delimtools/R/abgd_tbl.R | 35 +++ delimtools-0.2.2/delimtools/R/asap_tbl.R | 29 ++- delimtools-0.2.2/delimtools/R/bgmyc_tbl.R | 8 delimtools-0.2.2/delimtools/R/clean_dna.R | 2 delimtools-0.2.2/delimtools/R/confidence_intervals.R | 11 - delimtools-0.2.2/delimtools/R/delim_join.R | 22 +- delimtools-0.2.2/delimtools/R/gmyc_tbl.R | 6 delimtools-0.2.2/delimtools/R/match_ratio.R | 2 delimtools-0.2.2/delimtools/R/mptp_tbl.R | 10 - delimtools-0.2.2/delimtools/README.md | 65 ++---- delimtools-0.2.2/delimtools/build/vignette.rds |binary delimtools-0.2.2/delimtools/man/abgd_tbl.Rd | 6 delimtools-0.2.2/delimtools/man/asap_tbl.Rd | 4 delimtools-0.2.2/delimtools/man/bgmyc_tbl.Rd | 8 delimtools-0.2.2/delimtools/man/confidence_intervals.Rd | 11 - delimtools-0.2.2/delimtools/man/delim_join.Rd | 22 +- delimtools-0.2.2/delimtools/man/figures/README-example-1.png |binary delimtools-0.2.2/delimtools/man/gmyc_tbl.Rd | 6 delimtools-0.2.2/delimtools/man/mptp_tbl.Rd | 10 - 73 files changed, 168 insertions(+), 194 deletions(-)
Title: A Toolkit for Connecting R and Large Language Models
Description: A complete toolkit for connecting 'R' environments with Large
Language Models (LLMs). Provides utilities for describing 'R' objects,
package documentation, and workspace state in plain text formats
optimized for LLM consumption. Supports multiple workflows:
interactive copy-paste to external chat interfaces, programmatic tool
registration with 'ellmer' chat clients, batteries-included chat
applications via 'shinychat', and exposure to external coding agents
through the Model Context Protocol. Project configuration files enable
stable, repeatable conversations with project-specific context and
preferred LLM settings.
Author: Garrick Aden-Buie [aut, cre] ,
Simon Couch [aut] ,
Joe Cheng [aut],
Posit Software, PBC [cph, fnd],
Google [cph] ,
Microsoft [cph] ,
Jamie Perkins [cph]
Maintainer: Garrick Aden-Buie <garrick@adenbuie.com>
Diff between btw versions 1.2.0 dated 2026-03-16 and 1.2.1 dated 2026-03-23
DESCRIPTION | 6 +- MD5 | 34 ++++++------- NEWS.md | 8 +++ R/edit_btw_md.R | 12 ++-- R/tool-files-edit.R | 93 +++++++++++++++++++++++++++++++++++- R/tool-files-read.R | 28 ++++++++++ R/tool-files-replace.R | 35 ++++++++++++- R/tool-skills.R | 57 ++++++++++++++++------ R/utils.R | 26 ++++++---- exec/btw.R | 5 - man/btw_skill_install_github.Rd | 5 + man/btw_skill_install_package.Rd | 5 + man/btw_tool_files_edit.Rd | 97 ++++++++++++++++++++++++++++++++++++-- man/btw_tool_files_read.Rd | 29 ++++++++++- man/btw_tool_files_replace.Rd | 37 ++++++++++++-- man/btw_tool_skill.Rd | 5 + man/use_btw_md.Rd | 12 ++-- tests/testthat/test-tool_skills.R | 34 +++++++++++++ 18 files changed, 445 insertions(+), 83 deletions(-)
Title: Access to the List of Bird Species of Peru
Description: Provides access to the species checklist published in
'List of the Birds of Peru' by Plenge, M. A. and Angulo, F.
(version 29-12-2025) <https://sites.google.com/site/boletinunop/checklist>.
The package exposes the current Peru bird checklist as an R dataset and
includes tools for species lookup, taxonomic reconciliation, and fuzzy
matching of scientific names. These features help streamline taxonomic
validation for researchers and conservationists.
Author: Paul E. Santos Andrade [aut, cre, cph]
Maintainer: Paul E. Santos Andrade <paulefrens@gmail.com>
Diff between avesperu versions 0.0.8 dated 2026-01-08 and 0.1.0 dated 2026-03-23
avesperu-0.0.8/avesperu/tests/testthat/test-test_search_avesperu.R |only avesperu-0.1.0/avesperu/DESCRIPTION | 22 avesperu-0.1.0/avesperu/MD5 | 41 + avesperu-0.1.0/avesperu/NAMESPACE | 2 avesperu-0.1.0/avesperu/R/aves_peru_2025_v5.R | 13 avesperu-0.1.0/avesperu/R/aves_peru_data.R | 3 avesperu-0.1.0/avesperu/R/get_avesperu.R | 96 ++- avesperu-0.1.0/avesperu/R/internals.R | 262 ++++++---- avesperu-0.1.0/avesperu/R/onload.R | 33 - avesperu-0.1.0/avesperu/R/shiny-app.R |only avesperu-0.1.0/avesperu/README.md | 31 + avesperu-0.1.0/avesperu/inst/extdata |only avesperu-0.1.0/avesperu/man/aves_peru_2025_v4.Rd | 3 avesperu-0.1.0/avesperu/man/aves_peru_2025_v5.Rd | 13 avesperu-0.1.0/avesperu/man/figures/README-unnamed-chunk-3-1.png |only avesperu-0.1.0/avesperu/man/figures/shiny_app.png |only avesperu-0.1.0/avesperu/man/parse_unop_date.Rd |only avesperu-0.1.0/avesperu/man/run_avesperu_app.Rd |only avesperu-0.1.0/avesperu/man/search_avesperu.Rd | 3 avesperu-0.1.0/avesperu/man/unop_check_update.Rd | 20 avesperu-0.1.0/avesperu/tests/testthat/helper-expectations.R |only avesperu-0.1.0/avesperu/tests/testthat/test-find-duplicates.R |only avesperu-0.1.0/avesperu/tests/testthat/test-parallel-processing.R |only avesperu-0.1.0/avesperu/tests/testthat/test-result-creators.R |only avesperu-0.1.0/avesperu/tests/testthat/test-search-avesperu.R |only avesperu-0.1.0/avesperu/tests/testthat/test-shiny-app-helpers.R |only avesperu-0.1.0/avesperu/tests/testthat/test-standardize-names.R |only avesperu-0.1.0/avesperu/tests/testthat/test-unop-check-update.R |only 28 files changed, 378 insertions(+), 164 deletions(-)
Title: 'AV1' Video Encoding for Biological Microscopy Data
Description: Converts legacy microscopy video formats (H.264/H.265, AVI/MJPEG,
TIFF stacks) to the modern 'AV1' codec with minimal quality loss. Typical
use cases include compressing large TIFF stacks from confocal microscopy and
time-lapse experiments from hundreds of gigabytes to manageable sizes,
re-encoding MP4 files exported from 'CellProfiler', 'ImageJ'/'Fiji', and
microscope software with approximately 2x better compression at the same
visual quality, and converting legacy AVI (MJPEG) and H.265 recordings to a
single patent-free format suited for long-term archival. Automatically selects
the best available backend: GPU hardware acceleration via 'Vulkan'
'VK_KHR_VIDEO_ENCODE_AV1' or 'VAAPI' (tested on AMD RDNA4; bundled headers,
builds with any 'Vulkan' SDK >= 1.3.275), with automatic fallback to CPU
encoding through 'FFmpeg' and 'SVT-AV1'. User controls quality via a single
CRF parameter; each backend adapts automatically (CPU and Vulkan use CRF
directly, VAAPI targets 55 percent of input [...truncated...]
Author: Yuri Baramykov [aut, cre]
Maintainer: Yuri Baramykov <lbsbmsu@mail.ru>
Diff between AV1R versions 0.1.2 dated 2026-03-05 and 0.1.3 dated 2026-03-23
DESCRIPTION | 20 + MD5 | 61 +++-- NEWS.md | 53 ++++ R/backend.R | 54 +++- R/batch.R | 239 ++++++++++++++++----- R/convert.R | 348 ++++++++++++++++++++++++++------ R/input.R | 2 R/options.R | 65 ++++- R/quality.R | 188 ++++++++++++++++- R/utils.R | 4 README.md | 101 ++++++++- inst/examples/batch_convert.R |only inst/examples/benchmark_backends.R |only inst/examples/calibrate_crf.R |only inst/examples/calibrate_raw.R |only inst/examples/calibrate_tiff_crf.R |only inst/examples/calibrate_vaapi_bitrate.R |only inst/examples/calibrate_vaapi_cqp.R |only inst/examples/encode_gpu.R | 8 inst/examples/tiff_scale.R |only man/AV1R-package.Rd | 2 man/av1r_options.Rd | 25 +- man/convert_folder.Rd | 27 ++ man/convert_to_av1.Rd | 5 man/detect_backend.Rd | 10 man/read_tiff_stack.Rd | 2 src/av1r_bindings.cpp | 1 src/av1r_encode_vulkan.cpp | 11 - src/av1r_vk_video_loader.h | 1 tests/testthat/test-backend.R | 39 +++ tests/testthat/test-batch.R | 2 tests/testthat/test-compute-size.R |only tests/testthat/test-encode.R |only tests/testthat/test-ffmpeg.R | 50 ++++ tests/testthat/test-options.R | 55 +++++ tests/testthat/test-quality-internal.R |only tests/testthat/test-tiff.R |only tests/testthat/test-utils.R |only 38 files changed, 1143 insertions(+), 230 deletions(-)
Title: Parse 'User-Agent' Strings
Description: Despite there being a section in RFC 7231
<https://datatracker.ietf.org/doc/html/rfc7231#section-5.5.3> defining a suggested
structure for 'User-Agent' headers this data is notoriously difficult
to parse consistently. Tools are provided that will take in user agent
strings and return structured R objects. This is a 'V8'-backed package
based on the 'ua-parser' project <https://github.com/ua-parser>.
Author: Bob Rudis [aut, cph],
Greg Hunt [aut, cre, cph],
Lindsey Simon [aut] ,
Tobie Langel [aut] ,
Colman Humphrey [ctb]
Maintainer: Greg Hunt <greg@firmansyah.com>
Diff between uaparserjs versions 0.3.5 dated 2020-05-11 and 0.3.6 dated 2026-03-23
DESCRIPTION | 22 +++++++++-------- LICENSE | 3 +- MD5 | 11 ++++---- NEWS.md | 12 ++++++--- README.md | 49 ++-------------------------------------- inst/js/newbuild |only inst/tinytest/test_uaparserjs.R | 9 ++++++- 7 files changed, 39 insertions(+), 67 deletions(-)
Title: University of Cincinnati Themes and Utilities for Econometrics
and Data Science
Description: Provides plotting helpers, table-formatting utilities, and
report templates for econometrics, model development, and applied data
analysis. Includes University of Cincinnati branded themes for
'ggplot2', 'modelsummary', 'flextable', 'rmarkdown', 'bookdown', and
'quarto'.
Author: Saannidhya Rawat [aut, cre]
Maintainer: Saannidhya Rawat <rawatsa@mail.uc.edu>
Diff between Rbearcat versions 0.2.1 dated 2026-03-21 and 0.2.2 dated 2026-03-23
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/aaa_uc_brand.R | 8 ++++---- inst/doc/formatting.html | 2 +- inst/rmarkdown/templates/bcat_beamer/skeleton/skeleton.Rmd | 2 +- 5 files changed, 13 insertions(+), 13 deletions(-)
Title: Develop Hybridization Probes
Description: Hybridization probes for target sequences can be made based on melting temperature value calculated by R package 'TmCalculator' <https://CRAN.R-project.org/package=TmCalculator> and methods extended from Beliveau, B. J.,(2018) <doi:10.1073/pnas.1714530115>, and those hybridization probes can be used to capture specific target regions in fluorescence in situ hybridization and next generation sequence experiments.
Author: Junhui Li [cre, aut]
Maintainer: Junhui Li <ljh.biostat@gmail.com>
Diff between ProbeDeveloper versions 1.1.0 dated 2022-01-30 and 1.1.1 dated 2026-03-23
DESCRIPTION | 20 - MD5 | 8 NAMESPACE | 7 R/ProbeMake.R | 802 ++++++++++++++++++++++++++++--------------------------- man/ProbeMake.Rd | 59 ++-- 5 files changed, 466 insertions(+), 430 deletions(-)
More information about ProbeDeveloper at CRAN
Permanent link
Title: Graph Prediction from a Graph Time Series
Description: Predicting the structure of a graph including new nodes and edges using
a time series of graphs. Flux balance analysis, a linear and integer programming
technique used in biochemistry is used with time series prediction methods to
predict the graph structure at a future time point
Kandanaarachchi (2025) <doi:10.48550/arXiv.2507.05806>.
Author: Sevvandi Kandanaarachchi [aut, cre] ,
Stefan Westerlund [aut]
Maintainer: Sevvandi Kandanaarachchi <sevvandik@gmail.com>
Diff between netseer versions 0.1.2 dated 2025-09-10 and 0.1.3 dated 2026-03-23
DESCRIPTION | 12 +++++++----- MD5 | 21 +++++++++++++++++---- NAMESPACE | 5 +++++ R/functions.R | 3 +++ R/measure_error.R |only R/read_graphs.R |only R/syngraphs-data.R |only data |only inst/doc/netseer.html | 12 ++++++------ inst/extdata |only man/load_graphs.Rd |only man/load_graphs_dir.Rd |only man/load_graphs_list.Rd |only man/measure_error.Rd |only man/save_graphs.Rd |only man/syngraphs.Rd |only 16 files changed, 38 insertions(+), 15 deletions(-)
Title: Models for Correlation Matrices Based on Graphs
Description: Implement some models for
correlation/covariance matrices including two approaches
to model correlation matrices from a graphical structure.
One use latent parent variables as proposed in
Sterrantino et. al. (2024) <doi:10.1007/s10260-025-00788-y>.
The other uses a graph to specify conditional
relations between the variables.
The graphical structure makes correlation matrices
interpretable and avoids the quadratic increase of
parameters as a function of the dimension.
In the first approach a natural sequence of simpler
models along with a complexity penalization is used.
The second penalizes deviations from a base model.
These can be used as prior for model parameters,
considering C code through the 'cgeneric' interface
for the 'INLA' package (<https://www.r-inla.org>).
This allows one to use these models as building
blocks combined and to other latent Gaussian models
in order to build complex data models.
Author: Elias Teixeira Krainski [cre, aut, cph] ,
Denis Rustand [aut, cph] ,
Anna Freni-Sterrantino [aut, cph] ,
Janet van Niekerk [aut, cph] ,
Haavard Rue’ [aut]
Maintainer: Elias Teixeira Krainski <eliaskrainski@gmail.com>
This is a re-admission after prior archival of version 0.1.15 dated 2026-01-15
Diff between graphpcor versions 0.1.15 dated 2026-01-15 and 0.1.24 dated 2026-03-23
graphpcor-0.1.15/graphpcor/R/aaa_classes.R |only graphpcor-0.1.15/graphpcor/R/aaa_methods.R |only graphpcor-0.1.15/graphpcor/R/cgeneric_pc_prec_correl.R |only graphpcor-0.1.15/graphpcor/inst/doc/treepcor.pdf |only graphpcor-0.1.15/graphpcor/man/KLD10.Rd |only graphpcor-0.1.15/graphpcor/man/Lprec0.Rd |only graphpcor-0.1.15/graphpcor/man/basecor-class.Rd |only graphpcor-0.1.15/graphpcor/man/basepcor-class.Rd |only graphpcor-0.1.15/graphpcor/man/cgeneric_pc_prec_correl.Rd |only graphpcor-0.1.15/graphpcor/man/fillLprec.Rd |only graphpcor-0.1.15/graphpcor/man/graphpcor-class.Rd |only graphpcor-0.1.15/graphpcor/man/hessian.graphpcor.Rd |only graphpcor-0.1.15/graphpcor/man/treepcor-class.Rd |only graphpcor-0.1.15/graphpcor/src |only graphpcor-0.1.24/graphpcor/DESCRIPTION | 13 graphpcor-0.1.24/graphpcor/MD5 | 102 +- graphpcor-0.1.24/graphpcor/NAMESPACE | 35 graphpcor-0.1.24/graphpcor/R/Laplacian.R |only graphpcor-0.1.24/graphpcor/R/aaa.R |only graphpcor-0.1.24/graphpcor/R/basecor.R | 119 +- graphpcor-0.1.24/graphpcor/R/basecor_utils.R | 160 --- graphpcor-0.1.24/graphpcor/R/basepcor.R | 172 +-- graphpcor-0.1.24/graphpcor/R/basepcor_utils.R | 68 - graphpcor-0.1.24/graphpcor/R/cgeneric_LKJ.R | 31 graphpcor-0.1.24/graphpcor/R/cgeneric_Wishart.R | 91 -- graphpcor-0.1.24/graphpcor/R/cgeneric_graphpcor.R | 340 ++++--- graphpcor-0.1.24/graphpcor/R/cgeneric_pc_correl.R | 336 ++++--- graphpcor-0.1.24/graphpcor/R/cgeneric_treepcor.R | 12 graphpcor-0.1.24/graphpcor/R/edges.R |only graphpcor-0.1.24/graphpcor/R/graphpcor.R | 408 ++++----- graphpcor-0.1.24/graphpcor/R/internal_utils.R |only graphpcor-0.1.24/graphpcor/R/numeric_utils.R |only graphpcor-0.1.24/graphpcor/R/stan.R |only graphpcor-0.1.24/graphpcor/R/treepcor.R | 274 +++--- graphpcor-0.1.24/graphpcor/build/vignette.rds |binary graphpcor-0.1.24/graphpcor/demo/00Index | 1 graphpcor-0.1.24/graphpcor/demo/basecor.R | 32 graphpcor-0.1.24/graphpcor/demo/basepcor.R | 63 + graphpcor-0.1.24/graphpcor/demo/graphpcor.R | 17 graphpcor-0.1.24/graphpcor/demo/minimal.R | 8 graphpcor-0.1.24/graphpcor/demo/pc_correl.R | 98 +- graphpcor-0.1.24/graphpcor/demo/stan.R |only graphpcor-0.1.24/graphpcor/demo/treepcor.R | 112 +- graphpcor-0.1.24/graphpcor/inst/doc/treepcor.R | 131 ++ graphpcor-0.1.24/graphpcor/inst/doc/treepcor.Rmd | 632 +++++++++++++- graphpcor-0.1.24/graphpcor/inst/doc/treepcor.html |only graphpcor-0.1.24/graphpcor/man/Laplacian.Rd | 7 graphpcor-0.1.24/graphpcor/man/basecor-utils.Rd | 43 graphpcor-0.1.24/graphpcor/man/basecor.Rd |only graphpcor-0.1.24/graphpcor/man/basepcor-utils.Rd |only graphpcor-0.1.24/graphpcor/man/basepcor.Rd |only graphpcor-0.1.24/graphpcor/man/cgeneric_LKJ.Rd | 31 graphpcor-0.1.24/graphpcor/man/cgeneric_Wishart.Rd | 15 graphpcor-0.1.24/graphpcor/man/cgeneric_graphpcor.Rd | 105 +- graphpcor-0.1.24/graphpcor/man/cgeneric_pc_correl.Rd | 120 +- graphpcor-0.1.24/graphpcor/man/edges.Rd |only graphpcor-0.1.24/graphpcor/man/graphpcor.Rd |only graphpcor-0.1.24/graphpcor/man/internal-utils.Rd |only graphpcor-0.1.24/graphpcor/man/numeric-utils.Rd |only graphpcor-0.1.24/graphpcor/man/stan_add.Rd |only graphpcor-0.1.24/graphpcor/man/treepcor.Rd |only graphpcor-0.1.24/graphpcor/vignettes/treepcor.Rmd | 632 +++++++++++++- 62 files changed, 2681 insertions(+), 1527 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-01-26 0.3.0
2026-01-22 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-11 0.1.0
Title: Infrastructure for the Traveling Salesperson Problem
Description: Basic infrastructure and some algorithms for the traveling
salesperson problem (also traveling salesman problem; TSP).
The package provides some simple algorithms and
an interface to the Concorde TSP solver and its implementation of the
Chained-Lin-Kernighan heuristic. The code for Concorde
itself is not included in the package and has to be obtained separately.
Hahsler and Hornik (2007) <doi:10.18637/jss.v023.i02>.
Author: Michael Hahsler [aut, cre, cph] ,
Kurt Hornik [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between TSP versions 1.2.6 dated 2025-11-27 and 1.2.7 dated 2026-03-23
DESCRIPTION | 8 +- MD5 | 30 ++++----- NEWS.md | 5 + R/TSPLIB.R | 59 +++++++++++++++---- R/solve_TSP.R | 97 +++++++++++++++++++------------- R/tsp_SA.R | 6 + README.md | 65 +++++++++++---------- inst/README_files/unnamed-chunk-6-1.png |binary inst/doc/TSP.R | 34 +++++------ inst/doc/TSP.Rnw | 9 +- inst/doc/TSP.pdf |binary man/TSPLIB.Rd | 2 man/solve_TSP.Rd | 96 ++++++++++++++++++++----------- tests/testthat/test-TSPLIB.R | 65 +++++++++++++++++++++ vignettes/TSP.Rnw | 9 +- vignettes/TSP.bib | 6 - 16 files changed, 327 insertions(+), 164 deletions(-)
Title: Miscellaneous Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Statistics to locate and tag peaks and valleys and to label plots
with the equation of a fitted polynomial model by ordinary least squares,
major axis, quantile and robust and resistant regression approaches. Line
and model equation for Normal mixture models. Labels for P-value,
R^2 or adjusted R^2 or information criteria for fitted models; parametric
and non-parametric correlation; ANOVA table or summary table for fitted
models as plot insets; annotations for multiple pairwise
comparisons with adjusted P-values. Model fit classes for which suitable
methods are provided by package 'broom' and 'broom.mixed' are supported as
well as user-defined wrappers on model fit functions, allowing model
selection and conditional labelling. Scales and stats to
build volcano and quadrant plots based on
outcomes, fold changes, p-values and false discovery rates.
Author: Pedro J. Aphalo [aut, cre] ,
Kamil Slowikowski [ctb] ,
Samer Mouksassi [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpmisc versions 0.6.3 dated 2025-11-29 and 0.7.0 dated 2026-03-23
ggpmisc-0.6.3/ggpmisc/tests/testthat/_snaps/R-4.4_gg-3.5.x |only ggpmisc-0.6.3/ggpmisc/tests/testthat/_snaps/R-4.5_gg-3.5.x |only ggpmisc-0.6.3/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-lqs-chr.svg |only ggpmisc-0.6.3/ggpmisc/tests/testthat/_snaps/R-4.6_gg-3.5.x |only ggpmisc-0.6.3/ggpmisc/tests/testthat/_snaps/stat-poly-line/stat-poly-line-lqs-chr.svg |only ggpmisc-0.6.3/ggpmisc/tests/testthat/_snaps/stat-poly-line/stat-poly-line-lqs-fun.svg |only ggpmisc-0.7.0/ggpmisc/DESCRIPTION | 46 ggpmisc-0.7.0/ggpmisc/MD5 | 1163 ++++------ ggpmisc-0.7.0/ggpmisc/NAMESPACE | 3 ggpmisc-0.7.0/ggpmisc/NEWS.md | 53 ggpmisc-0.7.0/ggpmisc/R/ggpmisc.R | 59 ggpmisc-0.7.0/ggpmisc/R/quant-helper-fun.R | 11 ggpmisc-0.7.0/ggpmisc/R/stat-correlation.R | 48 ggpmisc-0.7.0/ggpmisc/R/stat-distrmix-eq.R | 47 ggpmisc-0.7.0/ggpmisc/R/stat-distrmix-line.R | 21 ggpmisc-0.7.0/ggpmisc/R/stat-fit-broom-tb.R | 38 ggpmisc-0.7.0/ggpmisc/R/stat-fit-broom.R | 210 - ggpmisc-0.7.0/ggpmisc/R/stat-fit-deviations.R | 353 --- ggpmisc-0.7.0/ggpmisc/R/stat-fit-residuals.R | 180 - ggpmisc-0.7.0/ggpmisc/R/stat-ma-eq.R | 63 ggpmisc-0.7.0/ggpmisc/R/stat-ma-line.R | 55 ggpmisc-0.7.0/ggpmisc/R/stat-multcomp.R | 43 ggpmisc-0.7.0/ggpmisc/R/stat-peaks.R | 39 ggpmisc-0.7.0/ggpmisc/R/stat-poly-eq.R | 222 - ggpmisc-0.7.0/ggpmisc/R/stat-poly-line.R | 297 +- ggpmisc-0.7.0/ggpmisc/R/stat-quant-band.r | 18 ggpmisc-0.7.0/ggpmisc/R/stat-quant-eq.R | 63 ggpmisc-0.7.0/ggpmisc/R/stat-quant-line.r | 107 ggpmisc-0.7.0/ggpmisc/R/stat-spikes.R | 2 ggpmisc-0.7.0/ggpmisc/R/utilities-eq-label.R | 52 ggpmisc-0.7.0/ggpmisc/R/utilities-fm.R | 329 ++ ggpmisc-0.7.0/ggpmisc/R/utilities-labels.R | 460 +++ ggpmisc-0.7.0/ggpmisc/README.md | 138 - ggpmisc-0.7.0/ggpmisc/build/partial.rdb |binary ggpmisc-0.7.0/ggpmisc/build/vignette.rds |binary ggpmisc-0.7.0/ggpmisc/inst/doc/cheat-sheet.html | 6 ggpmisc-0.7.0/ggpmisc/inst/doc/user-guide.R | 20 ggpmisc-0.7.0/ggpmisc/inst/doc/user-guide.Rmd | 210 - ggpmisc-0.7.0/ggpmisc/inst/doc/user-guide.html | 765 ++++-- ggpmisc-0.7.0/ggpmisc/man/build_eq.x.rhs.Rd | 2 ggpmisc-0.7.0/ggpmisc/man/check_output_type.Rd |only ggpmisc-0.7.0/ggpmisc/man/coefs2poly_eq.Rd | 2 ggpmisc-0.7.0/ggpmisc/man/extract_weights.Rd |only ggpmisc-0.7.0/ggpmisc/man/figures/README-readme-03b-1.png |binary ggpmisc-0.7.0/ggpmisc/man/figures/README-readme-04b-1.png |binary ggpmisc-0.7.0/ggpmisc/man/figures/README-readme-04c-1.png |binary ggpmisc-0.7.0/ggpmisc/man/figures/README-readme-05-1.png |binary ggpmisc-0.7.0/ggpmisc/man/figures/README-unnamed-chunk-1-1.png |binary ggpmisc-0.7.0/ggpmisc/man/find_spikes.Rd | 2 ggpmisc-0.7.0/ggpmisc/man/fit_models_internal.Rd |only ggpmisc-0.7.0/ggpmisc/man/ggpmisc-ggproto.Rd | 4 ggpmisc-0.7.0/ggpmisc/man/ggpmisc-package.Rd | 61 ggpmisc-0.7.0/ggpmisc/man/guess_orientation.Rd | 3 ggpmisc-0.7.0/ggpmisc/man/plain_label.Rd | 8 ggpmisc-0.7.0/ggpmisc/man/quant_helper_fun.Rd | 156 - ggpmisc-0.7.0/ggpmisc/man/sprintf_dm.Rd | 2 ggpmisc-0.7.0/ggpmisc/man/stat_correlation.Rd | 69 ggpmisc-0.7.0/ggpmisc/man/stat_distrmix_eq.Rd | 622 ++--- ggpmisc-0.7.0/ggpmisc/man/stat_distrmix_line.Rd | 435 +-- ggpmisc-0.7.0/ggpmisc/man/stat_fit_augment.Rd | 93 ggpmisc-0.7.0/ggpmisc/man/stat_fit_deviations.Rd | 99 ggpmisc-0.7.0/ggpmisc/man/stat_fit_glance.Rd | 72 ggpmisc-0.7.0/ggpmisc/man/stat_fit_residuals.Rd | 23 ggpmisc-0.7.0/ggpmisc/man/stat_fit_tb.Rd | 45 ggpmisc-0.7.0/ggpmisc/man/stat_fit_tidy.Rd | 80 ggpmisc-0.7.0/ggpmisc/man/stat_ma_eq.Rd | 167 + ggpmisc-0.7.0/ggpmisc/man/stat_ma_line.Rd | 145 - ggpmisc-0.7.0/ggpmisc/man/stat_multcomp.Rd | 68 ggpmisc-0.7.0/ggpmisc/man/stat_peaks.Rd | 70 ggpmisc-0.7.0/ggpmisc/man/stat_poly_eq.Rd | 239 +- ggpmisc-0.7.0/ggpmisc/man/stat_poly_line.Rd | 228 + ggpmisc-0.7.0/ggpmisc/man/stat_quant_band.Rd | 109 ggpmisc-0.7.0/ggpmisc/man/stat_quant_eq.Rd | 164 + ggpmisc-0.7.0/ggpmisc/man/stat_quant_line.Rd | 136 - ggpmisc-0.7.0/ggpmisc/man/swap_xy.Rd | 16 ggpmisc-0.7.0/ggpmisc/man/typeset_numbers.Rd | 2 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.2 |only ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-bars-dunnet-many-levels.svg | 180 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-bars-dunnet.svg | 80 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-bars-tukey.svg | 180 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-bonferroni-dunnet.svg | 80 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-bonferroni-tukey.svg | 200 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-lm-char.svg | 180 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-lm-char2.svg | 180 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-lm-fun.svg | 180 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-lm-fun2.svg | 180 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-noload-more.svg | 20 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-noload.svg | 180 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-p-digits2.svg | 180 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-rlm-char.svg | 180 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-rlm-fun.svg | 180 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-text-pairwise-dunnet.svg | 72 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-text-pairwise-tukey.svg | 160 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-y-bottom-num-dunnet.svg | 80 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-y-bottom-num-tukey.svg | 180 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-y-top-dunnet.svg | 80 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-y-top-num-dunnet.svg | 80 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-y-top-num-tukey.svg | 180 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-multcomp/smltc-y-top-tukey.svg | 180 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-peaks/stat-peaks-ml-01.svg | 14 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-0.svg | 12 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-1.svg | 12 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-2.svg | 14 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-5.svg | 12 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-6.svg | 14 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-1-round.svg | 48 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-1.svg | 76 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-1a.svg | 68 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-poly1.svg | 92 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-poly3-comma.svg | 118 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-poly3.svg | 112 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-x-ix.svg | 92 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-x-iy.svg | 92 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-x-round-inf.svg | 84 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-x-round.svg | 76 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-x.svg | 92 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-x1.svg | 68 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-xminus1.svg | 78 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-xminus1a.svg | 78 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-xminus1b.svg | 78 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-xplus0.svg | 78 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-xplus0a.svg | 78 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-xplus0b.svg | 78 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-y.svg | 82 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-yminus1.svg | 70 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-yplus0.svg | 70 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-formula-ypoly1.svg | 82 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-gls-chr.svg | 102 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-gls-fun.svg | 102 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-lm-chr.svg | 158 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-lm-fun.svg | 158 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-lmrob-fun.svg | 104 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-lqs-fun.svg | 74 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-ltsreg-fun.svg | 130 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-more-comma.svg | 66 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-n1.svg | 12 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-n2-markdown.svg | 53 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-n2.svg | 14 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-n3-markdown.svg | 53 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-n5.svg | 12 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-n6.svg | 14 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-noload-more.svg | 94 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-noload-use-label-more.svg | 74 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-noload-use-label.svg | 72 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-noload.svg | 72 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-rlm-chr.svg | 102 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-poly-eq/stat-poly-eq-rlm-fun.svg | 102 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-0.svg | 56 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-1.svg | 56 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-2.svg | 62 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-5.svg | 56 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-6.svg | 62 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-1-round.svg | 144 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-1.svg | 126 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-1a.svg | 126 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-poly1.svg | 152 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-poly3.svg | 238 +- ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-x-ix.svg | 152 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-x-iy.svg | 152 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-x-round.svg | 152 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-x.svg | 152 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-x1.svg | 126 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-xminus1.svg | 138 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-xminus1a.svg | 138 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-xminus1b.svg | 138 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-xplus0.svg | 138 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-xplus0a.svg | 138 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-xplus0b.svg | 138 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-y-ix.svg | 152 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-y-iy.svg | 152 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-y.svg | 152 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-yminus1.svg | 138 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-yplus0.svg | 138 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-formula-ypoly1.svg | 152 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-n1-markdown.svg | 302 +- ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-n1.svg | 56 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-n2-markdown.svg | 302 +- ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-n2.svg | 62 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-n3-markdown.svg | 266 +- ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-n5.svg | 56 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-n6.svg | 62 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-noload-use-label.svg | 212 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-noload.svg | 170 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-quant-eq/stat-quant-eq-numeric.svg | 116 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/R-4.5_gg-4.0.x/stat-valleys/stat-valleys-ml-01.svg | 14 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-broom/glance-method-args.svg | 2 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-broom/glance-method-cortest-formula.svg | 2 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-broom/glance-method-default-noload.svg | 2 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-broom/glance-method-default.svg | 2 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-broom/glance-method-lm-char.svg | 2 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-broom/glance-method-lm-fun.svg | 2 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-broom/glance-method-rq.svg | 2 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-broom/tidy-method-args.svg | 4 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-broom/tidy-method-default-noload.svg | 4 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-broom/tidy-method-default.svg | 4 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-broom/tidy-method-lm-char.svg | 4 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-broom/tidy-method-lm-fun.svg | 4 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-broom/tidy-method-rq.svg | 4 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-broom/tidy-tidy-args.svg | 4 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-coor-kendall-round.svg | 58 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-coor-kendall-round2.svg | 58 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-coor-kendall-roundinf.svg | 58 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-coor-pearson-round-inf.svg | 60 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-coor-pearson-round.svg | 60 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-coor-pearson-round2.svg | 60 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-coor-spearman-round-inf.svg | 64 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-coor-spearman-round.svg | 58 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-coor-spearman-round2.svg | 64 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-correlation-kendall-cont.svg | 58 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-correlation-kendall-exact.svg | 64 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-correlation-kendall-load.svg | 58 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-correlation-kendall-noload-use-label-lc.svg | 58 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-correlation-kendall-noload-use-label.svg | 58 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-correlation-kendall-noload.svg | 58 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-correlation-pearson-cont.svg | 60 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-correlation-pearson-exact-boot.svg | 60 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-correlation-pearson-exact.svg | 60 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-correlation-pearson-load.svg | 60 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-correlation-pearson-noload-use-label-lc.svg | 60 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-correlation-pearson-noload-use-label.svg | 60 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-correlation-pearson-noload.svg | 60 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-correlation-pearson-small.svg | 60 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-correlation-spearman-cont.svg | 64 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-correlation-spearman-exact.svg | 64 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-correlation-spearman-load.svg | 64 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-correlation-spearman-noload-use-label-lc.svg | 64 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-correlation-spearman-noload-use-label.svg | 64 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-correlation/stat-correlation-spearman-noload.svg | 64 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-distrmix-eq/stat-distrmix-eq-2means.svg | 64 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-distrmix-eq/stat-distrmix-eq-2means2sds.svg | 64 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-distrmix-eq/stat-distrmix-eq-2sds.svg | 64 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-distrmix-eq/stat-distrmix-eq-components-all.svg | 136 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-distrmix-eq/stat-distrmix-eq-components-members.svg | 72 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-distrmix-eq/stat-distrmix-eq-components-sum.svg | 64 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-distrmix-eq/stat-distrmix-eq-free-sd.svg | 64 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-distrmix-eq/stat-distrmix-eq-fullrange.svg | 64 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-distrmix-eq/stat-distrmix-eq-geom-label-npc.svg | 66 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-distrmix-eq/stat-distrmix-eq-k1.svg | 36 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-distrmix-eq/stat-distrmix-eq-k4.svg | 124 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-fit-resid |only ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-formula-poly1.svg | 72 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-formula-x-i-x.svg | 72 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-formula-x-iy.svg | 72 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-formula-x-round-inf.svg | 72 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-formula-x-round-less.svg | 72 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-formula-x-round.svg | 72 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-formula-x.svg | 72 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-formula-y-ix.svg | 70 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-formula-y-iy.svg | 70 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-formula-y.svg | 70 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-ma.svg | 72 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-n1-markdown.svg | 32 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-n2-markdown.svg | 32 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-noload-more.svg | 32 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-noload-use-label-more-small.svg | 32 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-noload-use-label-more.svg | 32 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-noload-use-label-small.svg | 72 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-noload-use-label.svg | 72 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-noload.svg | 72 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-ols.svg | 70 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-rma-int.svg | 70 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-rma-rel.svg | 70 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-ma-eq/stat-ma-eq-sma.svg | 52 ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-poly-line/stat-poly-line-lqslts-chr.svg |only ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-poly-line/stat-poly-line-lqslts-fun.svg |only ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-poly-line/stat-poly-line-lts-chr.svg |only ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-poly-line/stat-poly-line-ltsreg-chr.svg |only ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-quant-line/stat-quant-line-formula-missing-orientationx.svg | 224 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-quant-line/stat-quant-line-formula-missing-orientationy.svg | 220 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-quant-line/stat-quant-line-formula-missing-rqss.svg | 224 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-quant-line/stat-quant-line-formula-missing.svg | 224 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-quant-line/stat-quant-line-formula-poly1.svg | 224 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-quant-line/stat-quant-line-formula-poly3.svg | 224 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-quant-line/stat-quant-line-formula-x-ix.svg | 224 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-quant-line/stat-quant-line-formula-x-iy.svg | 224 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-quant-line/stat-quant-line-formula-x.svg | 224 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-quant-line/stat-quant-line-formula-xminus1.svg | 222 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-quant-line/stat-quant-line-formula-xplus0.svg | 222 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-quant-line/stat-quant-line-formula-y-ix.svg | 220 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-quant-line/stat-quant-line-formula-y-iy.svg | 220 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-quant-line/stat-quant-line-formula-y.svg | 220 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-quant-line/stat-quant-line-formula-yminus1.svg | 222 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-quant-line/stat-quant-line-formula-yplus0.svg | 222 - ggpmisc-0.7.0/ggpmisc/tests/testthat/_snaps/stat-quant-line/stat-quant-line-formula-ypoly1.svg | 220 - ggpmisc-0.7.0/ggpmisc/tests/testthat/test-eq-label-utils.R | 53 ggpmisc-0.7.0/ggpmisc/tests/testthat/test-label-utils.R | 252 +- ggpmisc-0.7.0/ggpmisc/tests/testthat/test-stat-broom.R | 26 ggpmisc-0.7.0/ggpmisc/tests/testthat/test-stat-fit-resid.R |only ggpmisc-0.7.0/ggpmisc/tests/testthat/test-stat-multcomp.R | 4 ggpmisc-0.7.0/ggpmisc/tests/testthat/test-stat-poly-eq.R | 4 ggpmisc-0.7.0/ggpmisc/tests/testthat/test-stat-poly-line.R | 34 ggpmisc-0.7.0/ggpmisc/tests/testthat/test-stat-quant-eq.R | 4 ggpmisc-0.7.0/ggpmisc/vignettes/user-guide.Rmd | 210 - 293 files changed, 14948 insertions(+), 13474 deletions(-)
Title: File-Backed Array for Out-of-Memory Computation
Description: Stores large arrays in files to avoid occupying large
memories. Implemented with super fast gigabyte-level multi-threaded
reading/writing via 'OpenMP'. Supports multiple non-character data
types (double, float, complex, integer, logical, and raw).
Author: Zhengjia Wang [aut, cre, cph]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between filearray versions 0.2.0 dated 2025-04-01 and 0.2.1 dated 2026-03-23
DESCRIPTION | 8 +++--- MD5 | 24 ++++++++++--------- NEWS.md | 7 +++++ R/RcppExports.R | 4 +++ R/methods-subset.R | 13 ++++------ build/vignette.rds |binary inst/doc/performance.html | 5 ++-- src/RcppExports.cpp | 13 ++++++++++ src/collapse.cpp | 6 +++- src/common.h | 1 src/compat.h |only src/core.cpp | 2 - src/utils.cpp | 52 +++++++++++++++++++++++++++++++++++++------ tests/testthat/test-compat.R |only 14 files changed, 101 insertions(+), 34 deletions(-)