Title: Armadillo Client for the Armadillo Service
Description: A set of functions to manage data shared on a
'MOLGENIS Armadillo' server.
Author: Mariska Slofstra [aut, cre] ,
Sido Haakma [aut] ,
Tommy de Boer [aut] ,
Fleur Kelpin [aut] ,
Morris Swertz [aut] ,
Tim Cadman [aut]
Maintainer: Mariska Slofstra <m.k.slofstra@umcg.nl>
Diff between MolgenisArmadillo versions 2.9.3 dated 2025-12-06 and 3.0.0 dated 2026-03-26
MolgenisArmadillo-2.9.3/MolgenisArmadillo/man/armadillo.get_token.Rd |only MolgenisArmadillo-2.9.3/MolgenisArmadillo/man/dot-add_slash_if_missing.Rd |only MolgenisArmadillo-2.9.3/MolgenisArmadillo/man/dot-compress_resource.Rd |only MolgenisArmadillo-2.9.3/MolgenisArmadillo/man/dot-compress_table.Rd |only MolgenisArmadillo-2.9.3/MolgenisArmadillo/man/dot-format_api_posts.Rd |only MolgenisArmadillo-2.9.3/MolgenisArmadillo/man/dot-get_linkfile_content.Rd |only MolgenisArmadillo-2.9.3/MolgenisArmadillo/man/dot-load_linked_table.Rd |only MolgenisArmadillo-2.9.3/MolgenisArmadillo/man/dot-load_resource.Rd |only MolgenisArmadillo-2.9.3/MolgenisArmadillo/man/dot-load_table.Rd |only MolgenisArmadillo-3.0.0/MolgenisArmadillo/DESCRIPTION | 8 - MolgenisArmadillo-3.0.0/MolgenisArmadillo/MD5 | 47 +++---- MolgenisArmadillo-3.0.0/MolgenisArmadillo/NAMESPACE | 3 MolgenisArmadillo-3.0.0/MolgenisArmadillo/NEWS.md | 4 MolgenisArmadillo-3.0.0/MolgenisArmadillo/R/MolgenisArmadillo-defunct.R |only MolgenisArmadillo-3.0.0/MolgenisArmadillo/R/MolgenisArmadillo-package.R | 1 MolgenisArmadillo-3.0.0/MolgenisArmadillo/R/auth.R | 66 ++++++++-- MolgenisArmadillo-3.0.0/MolgenisArmadillo/R/resource.R | 2 MolgenisArmadillo-3.0.0/MolgenisArmadillo/R/subset.R | 4 MolgenisArmadillo-3.0.0/MolgenisArmadillo/R/table.R | 4 MolgenisArmadillo-3.0.0/MolgenisArmadillo/README.md | 2 MolgenisArmadillo-3.0.0/MolgenisArmadillo/inst/doc/MolgenisArmadillo.html | 5 MolgenisArmadillo-3.0.0/MolgenisArmadillo/inst/doc/create_resources.html | 5 MolgenisArmadillo-3.0.0/MolgenisArmadillo/inst/doc/creating_data_subsets.html | 5 MolgenisArmadillo-3.0.0/MolgenisArmadillo/inst/doc/install_packages.html | 5 MolgenisArmadillo-3.0.0/MolgenisArmadillo/man/MolgenisArmadillo-defunct.Rd |only MolgenisArmadillo-3.0.0/MolgenisArmadillo/man/armadillo.create_project.Rd | 10 - MolgenisArmadillo-3.0.0/MolgenisArmadillo/man/armadillo.login.Rd | 6 MolgenisArmadillo-3.0.0/MolgenisArmadillo/man/armadillo.subset.Rd | 10 - MolgenisArmadillo-3.0.0/MolgenisArmadillo/man/armadillo.subset_definition.Rd | 8 - MolgenisArmadillo-3.0.0/MolgenisArmadillo/man/figures |only MolgenisArmadillo-3.0.0/MolgenisArmadillo/tests/testthat/test-auth.R |only 31 files changed, 122 insertions(+), 73 deletions(-)
More information about MolgenisArmadillo at CRAN
Permanent link
Title: Tests for Geophysical Eigenvalues
Description: The eigenvalues of observed symmetric matrices are often of intense scientific interest. This package offers single sample tests for the eigenvalues of the population mean or the eigenvalue-multiplicity of the population mean. For k-samples, this package offers tests for equal eigenvalues between samples. Included is support for matrices with constraints common to geophysical tensors (constant trace, sum of squared eigenvalues, or both) and eigenvectors are usually considered nuisance parameters. Pivotal bootstrap methods enable these tests to have good performance for small samples (n=15 for 3x3 matrices). These methods were developed and studied by Hingee, Scealy and Wood (2026, <doi:10.1080/01621459.2025.2606381>). Also available is a 2-sample test using a Gaussian orthogonal ensemble approximation and an eigenvalue-multiplicity test that assumes orthogonally-invariant covariance.
Author: Kassel Liam Hingee [aut, cre] ,
Art B. Owen [cph] ,
Board of Trustees Leland Stanford Junior University [cph]
Maintainer: Kassel Liam Hingee <kassel.hingee@gmail.com>
Diff between TFORGE versions 0.1.16 dated 2025-12-12 and 0.1.17 dated 2026-03-26
DESCRIPTION | 12 ++++++------ MD5 | 18 +++++++++--------- NEWS.md | 3 +++ README.md | 4 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 +++- inst/REFERENCES.bib | 3 ++- inst/doc/Gonjo_demo.html | 2 +- man/TFORGE-package.Rd | 4 ++-- 10 files changed, 28 insertions(+), 22 deletions(-)
Title: Statistical Analysis of Point Processes
Description: Functions for statistical analysis of point processes.
Author: Yoshinori Kawasaki [aut, cre],
Junji Nakano [aut],
Masami Saga [aut],
The Institute of Statistical Mathematics [cph, fnd]
Maintainer: Yoshinori Kawasaki <kawasaki@ism.ac.jp>
Diff between SAPP versions 1.0.9-1 dated 2023-06-01 and 1.0.9-4 dated 2026-03-26
SAPP-1.0.9-1/SAPP/inst/AUTHORS |only SAPP-1.0.9-4/SAPP/DESCRIPTION | 20 ++- SAPP-1.0.9-4/SAPP/MD5 | 48 ++++---- SAPP-1.0.9-4/SAPP/NAMESPACE | 24 ++-- SAPP-1.0.9-4/SAPP/NEWS.md | 182 ++++++++++++++++--------------- SAPP-1.0.9-4/SAPP/build/vignette.rds |binary SAPP-1.0.9-4/SAPP/data/Brastings.rda |binary SAPP-1.0.9-4/SAPP/data/PProcess.rda |binary SAPP-1.0.9-4/SAPP/data/PoissonData.rda |binary SAPP-1.0.9-4/SAPP/data/SelfExcit.rda |binary SAPP-1.0.9-4/SAPP/data/main2003JUL26.rda |binary SAPP-1.0.9-4/SAPP/data/res2003JUL26.rda |binary SAPP-1.0.9-4/SAPP/inst/COPYRIGHTS |only SAPP-1.0.9-4/SAPP/inst/doc/SAPP.pdf |binary SAPP-1.0.9-4/SAPP/src/aftpoi.f | 148 +++++++++++++++++-------- SAPP-1.0.9-4/SAPP/src/comsub.f | 14 ++ SAPP-1.0.9-4/SAPP/src/eptrenf.f | 113 ++++++++++++------- SAPP-1.0.9-4/SAPP/src/etas.f | 50 ++++++-- SAPP-1.0.9-4/SAPP/src/etasimf.f | 3 SAPP-1.0.9-4/SAPP/src/linlinf.f | 18 ++- SAPP-1.0.9-4/SAPP/src/linsimf.f | 8 + SAPP-1.0.9-4/SAPP/src/pgraphf.f | 21 +++ SAPP-1.0.9-4/SAPP/src/ptspecf.f | 7 + SAPP-1.0.9-4/SAPP/src/raftpoi.f | 9 + SAPP-1.0.9-4/SAPP/src/retas.f | 4 SAPP-1.0.9-4/SAPP/src/simbvhf.f | 6 + 26 files changed, 441 insertions(+), 234 deletions(-)
Title: Event/Timeline Prediction Model Based on Piecewise Exponential
Description: Efficient algorithm for estimating piecewise exponential hazard models for right-censored data, and is useful for reliable power calculation, study design, and event/timeline prediction for study monitoring.
Author: Tianchen Xu [aut, cre]
Maintainer: Tianchen Xu <zjph602xutianchen@gmail.com>
Diff between PwePred versions 1.1.1 dated 2026-03-24 and 1.1.2 dated 2026-03-26
DESCRIPTION | 10 +++++----- MD5 | 31 ++++++++++++++++--------------- R/acc.R | 30 ++++++++++++------------------ R/fitting.R | 10 +++++----- inst/NEWS.Rd | 9 ++++++++- man/boot_fit_pwexpm.Rd | 2 +- man/boot_fit_pwexpm_surv.Rd | 6 ++---- man/coef.Rd | 4 ++-- man/confint.Rd |only man/cv_fit_pwexpm.Rd | 4 ++-- man/cv_fit_pwexpm_surv.Rd | 3 +-- man/fit_pwexpm.Rd | 2 +- man/fit_pwexpm_surv.Rd | 4 +--- man/plot_event.Rd | 2 +- man/plot_km.Rd | 2 +- man/predict.Rd | 6 +----- man/sim_followup.Rd | 1 - 17 files changed, 59 insertions(+), 67 deletions(-)
Title: Simulation and Estimation of the Neyman-Scott Type Spatial
Cluster Models
Description: Simulation and estimation for Neyman-Scott spatial cluster point
process models and their extensions, based on the methodology in Tanaka, Ogata,
and Stoyan (2008) <doi:10.1002/bimj.200610339>. To estimate parameters by the
simplex method, parallel computation using 'OpenMP' application programming
interface is available. For more details see Tanaka, Saga and Nakano
<doi:10.18637/jss.v098.i06>.
Author: Ushio Tanaka [aut, cre],
Junji Nakano [aut],
Masami Saga [aut]
Maintainer: Ushio Tanaka <utanaka@omu.ac.jp>
Diff between NScluster versions 1.3.6-4 dated 2025-04-30 and 1.3.6-5 dated 2026-03-26
NScluster-1.3.6-4/NScluster/src/NScluster.h |only NScluster-1.3.6-5/NScluster/DESCRIPTION | 24 ++++----- NScluster-1.3.6-5/NScluster/MD5 | 51 ++++++++++----------- NScluster-1.3.6-5/NScluster/NEWS.md | 5 ++ NScluster-1.3.6-5/NScluster/build/partial.rdb |binary NScluster-1.3.6-5/NScluster/build/vignette.rds |binary NScluster-1.3.6-5/NScluster/inst/COPYRIGHTS | 5 -- NScluster-1.3.6-5/NScluster/inst/doc/NScluster.pdf |binary NScluster-1.3.6-5/NScluster/src/Palm-IPf.f | 2 NScluster-1.3.6-5/NScluster/src/Palm-Thomasf.f | 2 NScluster-1.3.6-5/NScluster/src/Palm-TypeAf.f | 2 NScluster-1.3.6-5/NScluster/src/Palm-TypeBf.f | 2 NScluster-1.3.6-5/NScluster/src/Palm-TypeCf.f | 2 NScluster-1.3.6-5/NScluster/src/Simplex-IPf.f | 2 NScluster-1.3.6-5/NScluster/src/Simplex-Thomasf.f | 2 NScluster-1.3.6-5/NScluster/src/Simplex-TypeAf.f | 2 NScluster-1.3.6-5/NScluster/src/Simplex-TypeBf.f | 2 NScluster-1.3.6-5/NScluster/src/Simplex-TypeCf.f | 2 NScluster-1.3.6-5/NScluster/src/Simulate-IPf.f | 2 NScluster-1.3.6-5/NScluster/src/Simulate-Thomasf.f | 2 NScluster-1.3.6-5/NScluster/src/Simulate-TypeAf.f | 2 NScluster-1.3.6-5/NScluster/src/Simulate-TypeBf.f | 2 NScluster-1.3.6-5/NScluster/src/Simulate-TypeCf.f | 2 NScluster-1.3.6-5/NScluster/src/comsub.f | 1 NScluster-1.3.6-5/NScluster/src/comsubOMP.f | 1 NScluster-1.3.6-5/NScluster/src/init.c | 22 --------- NScluster-1.3.6-5/NScluster/src/regF77.h | 22 --------- 27 files changed, 43 insertions(+), 118 deletions(-)
Title: Categorical Data Analysis Program Package
Description: Categorical data analysis by AIC. The methodology is described in
Sakamoto (1992) <ISBN 978-0-7923-1429-5>.
Author: Yoshinori Kawasaki [aut, cre],
Junji Nakano [aut],
Masami Saga [aut],
The Institute of Statistical Mathematics [cph, fnd]
Maintainer: Yoshinori Kawasaki <kawasaki@ism.ac.jp>
Diff between catdap versions 1.3.7 dated 2023-05-31 and 1.3.7-4 dated 2026-03-26
catdap-1.3.7-4/catdap/DESCRIPTION | 20 ++-- catdap-1.3.7-4/catdap/MD5 | 29 ++--- catdap-1.3.7-4/catdap/NEWS.md | 10 ++ catdap-1.3.7-4/catdap/data/HealthData.rda |binary catdap-1.3.7-4/catdap/data/HealthData.txt.gz |binary catdap-1.3.7-4/catdap/data/HelloGoodbye.csv.gz |binary catdap-1.3.7-4/catdap/data/HelloGoodbye.rda |binary catdap-1.3.7-4/catdap/data/JNcharacter.rda |binary catdap-1.3.7-4/catdap/data/MissingHealthData.rda |binary catdap-1.3.7-4/catdap/data/datalist | 8 - catdap-1.3.7-4/catdap/inst/COPYRIGHTS |only catdap-1.3.7-4/catdap/src/catdap1f.f | 11 +- catdap-1.3.7-4/catdap/src/catdap2mf.f | 113 +++++++++++++---------- catdap-1.3.7-4/catdap/src/init.c | 22 ---- catdap-1.3.7-4/catdap/src/regF77.h | 21 ---- catdap-1.3.7/catdap/inst/AUTHORS |only catdap-1.3.7/catdap/src/catdap.h |only 17 files changed, 113 insertions(+), 121 deletions(-)
Title: Causal Inference with Tree-Based Machine Learning Algorithms
Description: Estimating heterogeneous treatment effects with tree-based machine
learning algorithms and visualizing estimated results in flexible and
presentation-ready ways. For more information, see Brand, Xu, Koch,
and Geraldo (2021) <doi:10.1177/0081175021993503>. Our current package
first started as a fork of the 'causalTree' package on 'GitHub' and we
greatly appreciate the authors for their extremely useful and free package.
Author: Jiahui Xu [cre, aut],
Tanvi Shinkre [aut],
Jennie Brand [aut]
Maintainer: Jiahui Xu <jiahuixu@ucla.edu>
Diff between htetree versions 0.1.20 dated 2025-01-13 and 0.1.23 dated 2026-03-26
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/causalTree_callback.c | 16 ++++------------ 3 files changed, 9 insertions(+), 17 deletions(-)
Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning.
The core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems, including
nominal, ordinal, numeric, censored as well as multivariate response
variables and arbitrary measurement scales of the covariates.
Based on conditional inference trees, cforest() provides an
implementation of Breiman's random forests. The function mob()
implements an algorithm for recursive partitioning based on
parametric models (e.g. linear models, GLMs or survival
regression) employing parameter instability tests for split
selection. Extensible functionality for visualizing tree-structured
regression models is available. The methods are described in
Hothorn et al. (2006) <doi:10.1198/106186006X133933>,
Zeileis et al. (2008) <d [...truncated...]
Author: Torsten Hothorn [aut, cre] ,
Kurt Hornik [aut] ,
Carolin Strobl [aut] ,
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between party versions 1.3-19 dated 2026-03-10 and 1.3-20 dated 2026-03-26
DESCRIPTION | 8 +++---- MD5 | 36 ++++++++++++++++----------------- build/partial.rdb |binary inst/NEWS.Rd | 8 +++++++ inst/doc/MOB.pdf |binary inst/doc/party.pdf |binary src/Classes.c | 11 +++++++++- src/Classes.h | 2 + src/Convenience.c | 33 +++++++++++++++++++++---------- src/Distributions.c | 12 ++++++----- src/IndependenceTest.c | 11 +++++----- src/Memory.c | 15 ++++++++++---- src/Node.c | 52 ++++++++++++++++++++++++++++--------------------- src/Predict.c | 20 +++++++++++------- src/RandomForest.c | 34 +++++++++++++++++++------------- src/Splits.c | 9 +------- src/SurrogateSplits.c | 20 +++++++++++------- src/TreeGrow.c | 25 ++++++++++++++--------- src/Utils.c | 36 +++++++++++++++++++++++++++++++-- 19 files changed, 214 insertions(+), 118 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and an R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 1.5.0 dated 2026-03-14 and 1.5.1 dated 2026-03-26
duckdb-1.5.0/duckdb/R/cpp12.R |only duckdb-1.5.1/duckdb/DESCRIPTION | 10 - duckdb-1.5.1/duckdb/MD5 | 71 +++++----- duckdb-1.5.1/duckdb/NEWS.md | 17 ++ duckdb-1.5.1/duckdb/R/Driver.R | 7 duckdb-1.5.1/duckdb/R/backend-dbplyr__duckdb_connection.R | 2 duckdb-1.5.1/duckdb/R/convert.R | 16 ++ duckdb-1.5.1/duckdb/R/csv.R | 2 duckdb-1.5.1/duckdb/R/dbConnect__duckdb_driver.R | 10 + duckdb-1.5.1/duckdb/R/extensions.R |only duckdb-1.5.1/duckdb/R/package.R |only duckdb-1.5.1/duckdb/R/sql.R | 2 duckdb-1.5.1/duckdb/R/version.R | 2 duckdb-1.5.1/duckdb/cleanup | 7 duckdb-1.5.1/duckdb/cleanup.win | 7 duckdb-1.5.1/duckdb/configure | 8 - duckdb-1.5.1/duckdb/inst/include/cpp11/r_vector.hpp | 1 duckdb-1.5.1/duckdb/inst/include/cpp11/sexp.hpp | 6 duckdb-1.5.1/duckdb/man/backend-duckdb.Rd | 2 duckdb-1.5.1/duckdb/man/duckdb.Rd | 12 + duckdb-1.5.1/duckdb/man/duckdb_connection-class.Rd | 8 - duckdb-1.5.1/duckdb/man/duckdb_driver-class.Rd | 2 duckdb-1.5.1/duckdb/man/duckdb_read_csv.Rd | 2 duckdb-1.5.1/duckdb/man/duckdb_result-class.Rd | 2 duckdb-1.5.1/duckdb/src/Makevars.duckdb | 7 duckdb-1.5.1/duckdb/src/convert.cpp | 11 + duckdb-1.5.1/duckdb/src/duckdb.tar.xz |binary duckdb-1.5.1/duckdb/src/include/convert.hpp | 9 - duckdb-1.5.1/duckdb/src/include/rapi.hpp | 2 duckdb-1.5.1/duckdb/src/register.cpp | 8 - duckdb-1.5.1/duckdb/src/statement.cpp | 2 duckdb-1.5.1/duckdb/src/transform.cpp | 14 + duckdb-1.5.1/duckdb/src/types.cpp | 1 duckdb-1.5.1/duckdb/src/utils.cpp | 4 duckdb-1.5.1/duckdb/tests/testthat/setup.R |only duckdb-1.5.1/duckdb/tests/testthat/test-arrow.R | 6 duckdb-1.5.1/duckdb/tests/testthat/test-geometry.R |only duckdb-1.5.1/duckdb/tests/testthat/test-numeric.R | 1 duckdb-1.5.1/duckdb/tests/testthat/test-tbl__duckdb_connection.R | 5 39 files changed, 181 insertions(+), 85 deletions(-)
Title: Estimating Remaining Useful Life with Linear Mixed Effects
Models
Description: Provides tools for estimating the Remaining Useful Life (RUL) of degrading systems using linear mixed-effects models and creating a health index. It supports both univariate and multivariate degradation signals. For multivariate inputs, the signals are merged into a univariate health index prior to modeling. Linear and exponential degradation trajectories are supported (the latter using a log transformation). Remaining Useful Life (RUL) distributions are estimated using Bayesian updating for new units, enabling on-site predictive maintenance. Based on the methodology of Liu and Huang (2016) <doi:10.1109/TASE.2014.2349733>.
Author: Pedro Abraham Montoya Calzada [aut, cre, cph] ,
Rogelio Salinas Gutierrez [aut, cph] ,
Silvia Rodriguez-Narciso [aut, cph] ,
Netzahualcoyotl Castaneda-Leyva [aut, cph]
Maintainer: Pedro Abraham Montoya Calzada <pedroabraham.montoya@gmail.com>
Diff between degradr versions 1.0.1 dated 2025-10-01 and 1.0.2 dated 2026-03-26
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/fit_healthindex.R | 1 + R/fit_model.R | 1 + 4 files changed, 8 insertions(+), 6 deletions(-)