Title: Characterise Transitions in Test Result Status in Longitudinal
Studies
Description: Analyse data from longitudinal studies to characterise changes in values of
semi-quantitative outcome variables within individual subjects, using high performance C++
code to enable rapid processing of large datasets. A flexible methodology is available for
codifying these state transitions.
Author: Mark Eisler [aut, cre, cph] ,
Ana Rabaza [aut]
Maintainer: Mark Eisler <mark.eisler@bristol.ac.uk>
Diff between Transition versions 1.0.2 dated 2026-02-11 and 1.0.3 dated 2026-03-28
DESCRIPTION | 8 +- MD5 | 22 ++--- NEWS.md | 6 + R/RcppExports.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/convertDate.R | 87 ++++++++++++++++++++-- inst/doc/convertDate.Rnw | 176 ++++++++++++++++++++++++++++++++++------------ inst/doc/convertDate.pdf |binary man/Transitions.Rd | 2 src/transition.cpp | 2 vignettes/convertDate.Rnw | 176 ++++++++++++++++++++++++++++++++++------------ 12 files changed, 365 insertions(+), 116 deletions(-)
Title: Facilitate Analysis of Proteomic Data from Olink
Description: A collection of functions to facilitate analysis of proteomic
data from Olink, primarily NPX data that has been exported from Olink
Software. The functions also work on QUANT data from
Olink by log- transforming the QUANT data. The functions are focused
on reading data, facilitating data wrangling and quality control
analysis, performing statistical analysis and generating figures to
visualize the results of the statistical analysis. The goal of this
package is to help users extract biological insights from proteomic
data run on the Olink platform.
Author: Kathleen Nevola [aut, cre] ,
Marianne Sandin [aut] ,
Jamey Guess [aut] ,
Simon Forsberg [aut] ,
Christoffer Cambronero [aut] ,
Pascal Pucholt [aut] ,
Boxi Zhang [aut] ,
Masoumeh Sheikhi [aut] ,
Klev Diamanti [aut] ,
Amrita Kar [aut] ,
Lei Conze [aut] [...truncated...]
Maintainer: Kathleen Nevola <biostattools@olink.com>
Diff between OlinkAnalyze versions 4.5.0 dated 2026-01-28 and 5.0.0 dated 2026-03-28
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OlinkAnalyze-5.0.0/OlinkAnalyze/tests/testthat/test-olink_normalization.R | 4653 +-- OlinkAnalyze-5.0.0/OlinkAnalyze/tests/testthat/test-olink_normalization_format.R | 4543 +-- OlinkAnalyze-5.0.0/OlinkAnalyze/tests/testthat/test-olink_normalization_n.R | 2688 - OlinkAnalyze-5.0.0/OlinkAnalyze/tests/testthat/test-olink_normalization_product.R | 1988 - OlinkAnalyze-5.0.0/OlinkAnalyze/tests/testthat/test-olink_normalization_utils.R |14011 ++++------ OlinkAnalyze-5.0.0/OlinkAnalyze/tests/testthat/test-olink_ordinal_regression.R |only OlinkAnalyze-5.0.0/OlinkAnalyze/tests/testthat/test-olink_pathway_enrichment.R |only OlinkAnalyze-5.0.0/OlinkAnalyze/tests/testthat/test-olink_pathway_heatmap.R |only OlinkAnalyze-5.0.0/OlinkAnalyze/tests/testthat/test-olink_pathway_visualization.R |only OlinkAnalyze-5.0.0/OlinkAnalyze/tests/testthat/test-olink_plate_randomizer.R |only OlinkAnalyze-5.0.0/OlinkAnalyze/tests/testthat/test-olink_qc_plot.R | 291 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OlinkAnalyze-5.0.0/OlinkAnalyze/tests/testthat/test-read_npx_format.R |only OlinkAnalyze-5.0.0/OlinkAnalyze/tests/testthat/test-read_npx_legacy.R |only OlinkAnalyze-5.0.0/OlinkAnalyze/tests/testthat/test-read_npx_parquet.R |only OlinkAnalyze-5.0.0/OlinkAnalyze/tests/testthat/test-read_npx_utils.R |only OlinkAnalyze-5.0.0/OlinkAnalyze/tests/testthat/test-read_npx_wide.R |only OlinkAnalyze-5.0.0/OlinkAnalyze/tests/testthat/test-read_npx_zip.R |only OlinkAnalyze-5.0.0/OlinkAnalyze/tests/testthat/test-reference_data.R |only OlinkAnalyze-5.0.0/OlinkAnalyze/tests/testthat/test-utils.R |only OlinkAnalyze-5.0.0/OlinkAnalyze/vignettes/OlinkAnalyze-Vignette.Rmd |only 433 files changed, 31720 insertions(+), 28168 deletions(-)
Title: Selected ISO Codes
Description: ISO language, territory, currency, script and character codes.
Provides ISO 639 language codes, ISO 3166 territory codes, ISO 4217
currency codes, ISO 15924 script codes, and the ISO 8859 character codes
as well as the UN M.49 area codes.
Author: Christian Buchta [aut],
Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between ISOcodes versions 2025.05.18 dated 2025-05-18 and 2026.03.28 dated 2026-03-28
DESCRIPTION | 6 +++--- MD5 | 30 +++++++++++++++--------------- data/ISO_15924.rda |binary data/ISO_3166_1.rda |binary data/ISO_3166_2.rda |binary data/ISO_3166_3.rda |binary data/ISO_4217.rda |binary data/ISO_4217_Historic.rda |binary data/ISO_639_2.rda |binary data/ISO_639_3.rda |binary data/ISO_639_3_Retirements.rda |binary data/ISO_639_5.rda |binary data/ISO_8859.rda |binary data/UN_M.49_Countries.rda |binary data/UN_M.49_Regions.rda |binary man/ISO_639.Rd | 16 +++------------- 16 files changed, 21 insertions(+), 31 deletions(-)
Title: Efficient Data Filtering and Aggregation Using Grep
Description: Provides an interface to the system-level 'grep' utility for
efficiently reading, filtering, and aggregating data from multiple flat
files. By pre-filtering data at the command line before it enters the
R environment, the package reduces memory overhead and improves
ingestion speed. Includes functions for counting records across large
file systems and supports recursive directory searching.
Author: David Shilane [aut],
Atharv Raskar [aut],
Akshat Maurya [aut, cre]
Maintainer: Akshat Maurya <codingmaster902@gmail.com>
Diff between grepreaper versions 0.1.0 dated 2026-01-23 and 0.1.1 dated 2026-03-28
DESCRIPTION | 8 ++-- MD5 | 4 +- inst/doc/Introduction-to-grepreaper.html | 54 +++++++++++++++---------------- 3 files changed, 33 insertions(+), 33 deletions(-)
Title: Client for the 'KoboToolbox' API
Description: Suite of utilities for accessing and manipulating
data from the 'KoboToolbox' API. 'KoboToolbox' is a robust
platform designed for field data collection in various disciplines.
This package aims to simplify the process of fetching and handling
data from the API. Detailed documentation for the 'KoboToolbox' API
can be found at <https://support.kobotoolbox.org/api.html>.
Author: Ahmadou Dicko [aut, cre, cph],
Hisham Galal [ctb]
Maintainer: Ahmadou Dicko <mail@ahmadoudicko.com>
Diff between robotoolbox versions 1.4 dated 2024-12-19 and 1.6.0 dated 2026-03-28
robotoolbox-1.4/robotoolbox/man/figures/hex_robotoolbox.png |only robotoolbox-1.6.0/robotoolbox/DESCRIPTION | 8 robotoolbox-1.6.0/robotoolbox/LICENSE | 2 robotoolbox-1.6.0/robotoolbox/MD5 | 135 - robotoolbox-1.6.0/robotoolbox/NAMESPACE | 24 robotoolbox-1.6.0/robotoolbox/R/aaa-cache.R |only robotoolbox-1.6.0/robotoolbox/R/kobo_asset.R | 31 robotoolbox-1.6.0/robotoolbox/R/kobo_audit.R | 2 robotoolbox-1.6.0/robotoolbox/R/kobo_data.R | 516 ++- robotoolbox-1.6.0/robotoolbox/R/kobo_file.R | 5 robotoolbox-1.6.0/robotoolbox/R/kobo_form.R | 93 robotoolbox-1.6.0/robotoolbox/R/kobo_lang.R | 226 + robotoolbox-1.6.0/robotoolbox/R/kobo_setup.R | 27 robotoolbox-1.6.0/robotoolbox/R/kobo_token.R | 8 robotoolbox-1.6.0/robotoolbox/R/utils.R | 1314 ++++++---- robotoolbox-1.6.0/robotoolbox/README.md | 34 robotoolbox-1.6.0/robotoolbox/build/vignette.rds |binary robotoolbox-1.6.0/robotoolbox/inst/doc/audit-data.Rmd | 10 robotoolbox-1.6.0/robotoolbox/inst/doc/audit-data.html | 17 robotoolbox-1.6.0/robotoolbox/inst/doc/intro.R | 13 robotoolbox-1.6.0/robotoolbox/inst/doc/intro.Rmd | 32 robotoolbox-1.6.0/robotoolbox/inst/doc/intro.html | 117 robotoolbox-1.6.0/robotoolbox/inst/doc/multilang-forms.Rmd | 4 robotoolbox-1.6.0/robotoolbox/inst/doc/multilang-forms.html | 11 robotoolbox-1.6.0/robotoolbox/inst/doc/repeat-group-data.R | 4 robotoolbox-1.6.0/robotoolbox/inst/doc/repeat-group-data.Rmd | 10 robotoolbox-1.6.0/robotoolbox/inst/doc/repeat-group-data.html | 18 robotoolbox-1.6.0/robotoolbox/inst/doc/spatial-data.R | 5 robotoolbox-1.6.0/robotoolbox/inst/doc/spatial-data.Rmd | 9 robotoolbox-1.6.0/robotoolbox/inst/doc/spatial-data.html | 386 +- robotoolbox-1.6.0/robotoolbox/man/kobo_attachment_download.Rd | 4 robotoolbox-1.6.0/robotoolbox/man/kobo_cache.Rd |only robotoolbox-1.6.0/robotoolbox/man/kobo_cache_clear.Rd |only robotoolbox-1.6.0/robotoolbox/man/kobo_cache_info.Rd |only robotoolbox-1.6.0/robotoolbox/man/kobo_data.Rd | 43 robotoolbox-1.6.0/robotoolbox/man/kobo_lang.Rd | 97 robotoolbox-1.6.0/robotoolbox/man/kobo_setup.Rd | 18 robotoolbox-1.6.0/robotoolbox/tests/fixtures |only robotoolbox-1.6.0/robotoolbox/tests/testthat/_snaps/kobo_settings.md | 1 robotoolbox-1.6.0/robotoolbox/tests/testthat/setup-robotoolbox.R | 27 robotoolbox-1.6.0/robotoolbox/tests/testthat/test-kobo_asset.R | 10 robotoolbox-1.6.0/robotoolbox/tests/testthat/test-kobo_asset_file_list.R | 14 robotoolbox-1.6.0/robotoolbox/tests/testthat/test-kobo_asset_list.R | 8 robotoolbox-1.6.0/robotoolbox/tests/testthat/test-kobo_asset_version.R | 10 robotoolbox-1.6.0/robotoolbox/tests/testthat/test-kobo_asset_version_list.R | 10 robotoolbox-1.6.0/robotoolbox/tests/testthat/test-kobo_audit.R | 3 robotoolbox-1.6.0/robotoolbox/tests/testthat/test-kobo_cache.R |only robotoolbox-1.6.0/robotoolbox/tests/testthat/test-kobo_data.R | 296 +- robotoolbox-1.6.0/robotoolbox/tests/testthat/test-kobo_form.R | 26 robotoolbox-1.6.0/robotoolbox/tests/testthat/test-kobo_lang.R | 7 robotoolbox-1.6.0/robotoolbox/tests/testthat/test-kobo_settings.R | 35 robotoolbox-1.6.0/robotoolbox/tests/testthat/test-kobo_token.R | 5 robotoolbox-1.6.0/robotoolbox/vignettes/audit-data.Rmd | 10 robotoolbox-1.6.0/robotoolbox/vignettes/intro.Rmd | 32 robotoolbox-1.6.0/robotoolbox/vignettes/multilang-forms.Rmd | 4 robotoolbox-1.6.0/robotoolbox/vignettes/repeat-group-data.Rmd | 10 robotoolbox-1.6.0/robotoolbox/vignettes/spatial-data.Rmd | 9 57 files changed, 2534 insertions(+), 1206 deletions(-)
Title: Read Binary Radar Files from 'DWD' (German Weather Service)
Description: The 'DWD' provides gridded radar data for Germany in binary format.
'dwdradar' reads these files and enables a fast conversion into numerical format.
Author: Berry Boessenkool [aut, cre],
Henning Rust [ctb],
Christoph Ritschel [ctb]
Maintainer: Berry Boessenkool <berry-b@gmx.de>
Diff between dwdradar versions 0.2.10 dated 2023-09-27 and 0.2.13 dated 2026-03-28
DESCRIPTION | 12 +- MD5 | 10 +- R/readHeader.R | 236 +++++++++++++++++++++++++-------------------------- R/readRadarFile.R | 2 README.md | 3 man/readRadarFile.Rd | 2 6 files changed, 134 insertions(+), 131 deletions(-)
Title: A Modern and Flexible Data Pipeline for 'SurveyCTO'
Description: A modern and flexible R client for the 'SurveyCTO', a mobile and
offline data collection platform, providing a modern and consistent interface for
programmatic access to server resources. Built on top of the 'httr2' package,
it enables secure and efficient data retrieval and returns analysis-ready
data through optional tidying. It includes functions to create, upload, and
download server datasets, in addition to fetching form data, files, and
submission attachments. Robust authentication and request handling make the
package suitable for automated survey monitoring and downstream analysis.
Author: Gutama Girja Urago [aut, cre, cph]
Maintainer: Gutama Girja Urago <girjagutama@gmail.com>
Diff between ctoclient versions 0.0.1 dated 2026-02-19 and 0.1.0 dated 2026-03-28
DESCRIPTION | 8 MD5 | 10 NEWS.md | 33 +- R/cto_form_data.R | 664 +++++++++++++++++++++++++---------------- R/cto_form_dofile.R | 840 ++++++++++++++++++++++++++-------------------------- README.md | 318 +++++++++---------- 6 files changed, 1031 insertions(+), 842 deletions(-)
Title: Unicode Data and Utilities
Description: Data from Unicode 17.0.0 and related utilities.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between Unicode versions 16.0.0-1 dated 2025-05-18 and 17.0.0-1 dated 2026-03-28
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/sysdata.rda |binary 3 files changed, 6 insertions(+), 6 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-12-22 1.0.3
2025-11-29 1.0.2
2022-03-29 0.99.32
2021-12-17 0.99.14
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-03-19 0.2.1
2025-08-20 0.2.0
2024-02-26 0.1.1
2023-02-10 0.0.1
Title: Pretty Timelines in R
Description: A library for creating time based charts, like Gantt or timelines. Possible outputs
include 'ggplot2' diagrams, 'plotly.js' graphs, 'Highcharts.js' widgets and data.frames. Results can be
used in the 'RStudio' viewer pane, in 'RMarkdown' documents or in Shiny apps. In the
interactive outputs created by vistime() and hc_vistime(), you can interact with the
plot using mouse hover or zoom.
Author: Sandro Raabe [aut, cre]
Maintainer: Sandro Raabe <sa.ra.online@posteo.de>
Diff between vistime versions 1.2.4 dated 2023-10-29 and 1.3.0 dated 2026-03-28
DESCRIPTION | 10 - MD5 | 64 +++++----- NAMESPACE | 1 NEWS.md | 13 +- R/fix_columns.R | 16 +- R/gg_vistime.R | 3 R/hc_vistime.R | 5 R/plot_ggplot.R | 3 R/plot_highchart.R | 2 R/plot_plotly.R | 38 +++-- R/set_colors.R | 59 ++++++++- R/validate_input.R | 2 R/vistime-package.R | 4 R/vistime.R | 14 +- README.md | 33 ++--- build/vignette.rds |binary inst/doc/gg_vistime-vignette.Rmd | 2 inst/doc/gg_vistime-vignette.html | 35 ++--- inst/doc/hc_vistime-vignette.R | 9 - inst/doc/hc_vistime-vignette.Rmd | 11 - inst/doc/hc_vistime-vignette.html | 68 +++++----- inst/doc/vistime-vignette.R | 17 ++ inst/doc/vistime-vignette.Rmd | 25 ++- inst/doc/vistime-vignette.html | 224 ++++++++++++++++------------------- man/gg_vistime.Rd | 3 man/hc_vistime.Rd | 5 man/vistime-package.Rd | 52 ++++---- man/vistime.Rd | 12 + tests/testthat/test-set_colors.R | 160 ++++++++++++++++++++----- tests/testthat/test-validate_input.R | 4 vignettes/gg_vistime-vignette.Rmd | 2 vignettes/hc_vistime-vignette.Rmd | 11 - vignettes/vistime-vignette.Rmd | 25 ++- 33 files changed, 581 insertions(+), 351 deletions(-)
Title: Helper Functions to Install and Maintain TeX Live, and Compile
LaTeX Documents
Description: Helper functions to install and maintain the 'LaTeX' distribution
named 'TinyTeX' (<https://yihui.org/tinytex/>), a lightweight, cross-platform,
portable, and easy-to-maintain version of 'TeX Live'. This package also
contains helper functions to compile 'LaTeX' documents, and install missing
'LaTeX' packages automatically.
Author: Yihui Xie [aut, cre, cph] ,
Posit Software, PBC [cph, fnd],
Christophe Dervieux [ctb] ,
Devon Ryan [ctb] ,
Ethan Heinzen [ctb],
Fernando Cagua [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between tinytex versions 0.58 dated 2025-11-19 and 0.59 dated 2026-03-28
DESCRIPTION | 6 LICENSE | 2 MD5 | 34 ++--- R/install.R | 265 ++++++++++++++++++++++++------------------- R/latex.R | 114 ++++++++++-------- R/tlmgr.R | 115 ++++++++++-------- man/check_installed.Rd | 4 man/copy_tinytex.Rd | 8 - man/install_tinytex.Rd | 36 ++--- man/is_tinytex.Rd | 2 man/latexmk.Rd | 11 - man/parse_install.Rd | 6 man/parse_packages.Rd | 4 man/r_texmf.Rd | 10 - man/tl_sizes.Rd | 8 - man/tlmgr.Rd | 17 +- tests/test-ci/test-install.R | 4 tests/test-cran/test-latex.R | 14 ++ 18 files changed, 365 insertions(+), 295 deletions(-)
Title: Lightweight Extension of the Base R Graphics System
Description: Lightweight extension of the base R graphics system, with support
for automatic legends, facets, themes, and various other enhancements.
Author: Grant McDermott [aut, cre] ,
Vincent Arel-Bundock [aut] ,
Achim Zeileis [aut] ,
Etienne Bacher [ctb]
Maintainer: Grant McDermott <contact@grantmcdermott.com>
Diff between tinyplot versions 0.6.0 dated 2025-11-27 and 0.6.1 dated 2026-03-28
tinyplot-0.6.0/tinyplot/R/draw_legend.R |only tinyplot-0.6.0/tinyplot/R/draw_legend_utils.R |only tinyplot-0.6.0/tinyplot/R/draw_multi_legend.R |only tinyplot-0.6.0/tinyplot/R/sanitize_legend.R |only tinyplot-0.6.0/tinyplot/R/type_bubble.R |only tinyplot-0.6.1/tinyplot/DESCRIPTION | 14 tinyplot-0.6.1/tinyplot/MD5 | 97 - tinyplot-0.6.1/tinyplot/NAMESPACE | 1 tinyplot-0.6.1/tinyplot/NEWS.md | 56 + tinyplot-0.6.1/tinyplot/R/align_layer.R | 3 tinyplot-0.6.1/tinyplot/R/bubble.R |only tinyplot-0.6.1/tinyplot/R/by_aesthetics.R | 555 ++++------ tinyplot-0.6.1/tinyplot/R/facet.R | 19 tinyplot-0.6.1/tinyplot/R/flip.R | 9 tinyplot-0.6.1/tinyplot/R/legend.R |only tinyplot-0.6.1/tinyplot/R/legend_gradient.R |only tinyplot-0.6.1/tinyplot/R/legend_multi.R |only tinyplot-0.6.1/tinyplot/R/sanitize_type.R | 17 tinyplot-0.6.1/tinyplot/R/sanitize_xylab.R | 2 tinyplot-0.6.1/tinyplot/R/tinyformula.R | 4 tinyplot-0.6.1/tinyplot/R/tinyplot.R | 211 +-- tinyplot-0.6.1/tinyplot/R/type_area.R | 8 tinyplot-0.6.1/tinyplot/R/type_barplot.R | 8 tinyplot-0.6.1/tinyplot/R/type_boxplot.R | 42 tinyplot-0.6.1/tinyplot/R/type_density.R | 14 tinyplot-0.6.1/tinyplot/R/type_glm.R | 9 tinyplot-0.6.1/tinyplot/R/type_histogram.R | 10 tinyplot-0.6.1/tinyplot/R/type_jitter.R | 50 tinyplot-0.6.1/tinyplot/R/type_lm.R | 9 tinyplot-0.6.1/tinyplot/R/type_loess.R | 9 tinyplot-0.6.1/tinyplot/R/type_pointrange.R | 8 tinyplot-0.6.1/tinyplot/R/type_points.R | 36 tinyplot-0.6.1/tinyplot/R/type_polygon.R | 14 tinyplot-0.6.1/tinyplot/R/type_polypath.R | 47 tinyplot-0.6.1/tinyplot/R/type_rect.R | 16 tinyplot-0.6.1/tinyplot/R/type_ribbon.R | 7 tinyplot-0.6.1/tinyplot/R/type_ridge.R | 41 tinyplot-0.6.1/tinyplot/R/type_spineplot.R | 8 tinyplot-0.6.1/tinyplot/R/type_text.R | 36 tinyplot-0.6.1/tinyplot/R/type_violin.R | 27 tinyplot-0.6.1/tinyplot/R/utils.R | 54 tinyplot-0.6.1/tinyplot/R/zzz.R | 11 tinyplot-0.6.1/tinyplot/man/build_legend_args.Rd |only tinyplot-0.6.1/tinyplot/man/build_legend_env.Rd |only tinyplot-0.6.1/tinyplot/man/draw_gradient_swatch.Rd |only tinyplot-0.6.1/tinyplot/man/draw_legend.Rd | 12 tinyplot-0.6.1/tinyplot/man/draw_multi_legend.Rd | 16 tinyplot-0.6.1/tinyplot/man/figures/README-quickstart2-1.png |binary tinyplot-0.6.1/tinyplot/man/figures/README-quickstart3-1.png |binary tinyplot-0.6.1/tinyplot/man/figures/README-quickstart4-1.png |binary tinyplot-0.6.1/tinyplot/man/figures/README-quickstart5-1.png |binary tinyplot-0.6.1/tinyplot/man/figures/README-quickstart_theme-1.png |binary tinyplot-0.6.1/tinyplot/man/prepare_legend.Rd |only tinyplot-0.6.1/tinyplot/man/prepare_legend_multi.Rd |only tinyplot-0.6.1/tinyplot/man/restore_margin_inner.Rd |only tinyplot-0.6.1/tinyplot/man/restore_margin_outer.Rd |only tinyplot-0.6.1/tinyplot/man/sanitize_legend.Rd |only tinyplot-0.6.1/tinyplot/man/tinyplot-package.Rd | 2 58 files changed, 842 insertions(+), 640 deletions(-)
Title: Dynamically Generates Documentation from a 'Swagger' Compliant
API
Description: A collection of 'HTML', 'JavaScript', and 'CSS' assets that
dynamically generate beautiful documentation from a 'Swagger' compliant API:
<https://swagger.io/specification/>.
Author: Barret Schloerke [aut] ,
Javier Luraschi [aut],
Bruno Tremblay [cre, ctb],
RStudio [cph],
SmartBear Software [aut, cph]
Maintainer: Bruno Tremblay <cran@neoxone.com>
Diff between swagger versions 5.17.14.1 dated 2024-06-28 and 5.32.1 dated 2026-03-28
DESCRIPTION | 10 - LICENSE | 22 +- MD5 | 43 ++-- NAMESPACE | 12 - NEWS.md | 8 R/paths.R | 168 ++++++++--------- R/plumber.R | 116 +++++------ R/swagger.R | 24 +- inst/COPYRIGHTS | 110 +++++------ inst/dist5/oauth2-redirect.html | 75 ------- inst/dist5/oauth2-redirect.js |only inst/dist5/package.json | 38 ++- inst/dist5/swagger-ui-bundle.js | 4 inst/dist5/swagger-ui-bundle.js.LICENSE.txt |only inst/dist5/swagger-ui-standalone-preset.js | 4 inst/dist5/swagger-ui-standalone-preset.js.LICENSE.txt |only inst/dist5/swagger-ui.css | 4 inst/dist5/swagger-ui.js | 2 man/plumber_docs.Rd | 76 +++---- man/swagger_index.Rd | 46 ++-- man/swagger_path.Rd | 46 ++-- man/swagger_spec.Rd | 58 ++--- tests/testthat.R | 8 tests/testthat/test-swagger.R | 94 ++++----- 24 files changed, 454 insertions(+), 514 deletions(-)
Title: Spatio-Temporal Bayesian Modelling
Description: Fits, spatially predicts and temporally forecasts large amounts of space-time data using [1] Bayesian Gaussian Process (GP) Models, [2] Bayesian Auto-Regressive (AR) Models, and [3] Bayesian Gaussian Predictive Processes (GPP) based AR Models for spatio-temporal big-n problems. Bakar and Sahu (2015) <doi:10.18637/jss.v063.i15>.
Author: K. Shuvo Bakar [aut, cre] ,
Sujit K. Sahu [ctb]
Maintainer: K. Shuvo Bakar <shuvo.bakar@gmail.com>
Diff between spTimer versions 3.3.3 dated 2024-09-08 and 3.3.4 dated 2026-03-28
spTimer-3.3.3/spTimer/demo |only spTimer-3.3.4/spTimer/DESCRIPTION | 15 ++++++++------- spTimer-3.3.4/spTimer/MD5 | 6 ++---- spTimer-3.3.4/spTimer/inst/ChangeLog | 5 +++++ 4 files changed, 15 insertions(+), 11 deletions(-)
Title: Tools for Reading, Tokenizing and Parsing R Code
Description: Tools for the reading and tokenization of R code. The
'sourcetools' package provides both an R and C++ interface for the tokenization
of R code, and helpers for interacting with the tokenized representation of R
code.
Author: Kevin Ushey [aut, cre]
Maintainer: Kevin Ushey <kevinushey@gmail.com>
Diff between sourcetools versions 0.1.7-1 dated 2023-02-01 and 0.1.7-2 dated 2026-03-28
DESCRIPTION | 9 +++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ README.md | 3 --- 4 files changed, 12 insertions(+), 10 deletions(-)
Title: Sorted L1 Penalized Estimation
Description: Efficient implementations for Sorted L-One Penalized Estimation
(SLOPE): generalized linear models regularized with the sorted L1-norm
(Bogdan et al. 2015). Supported models include
ordinary least-squares regression, binomial regression, multinomial
regression, and Poisson regression. Both dense and sparse predictor
matrices are supported. In addition, the package features predictor
screening rules that enable fast and efficient solutions to high-dimensional
problems.
Author: Johan Larsson [aut, cre] ,
Jonas Wallin [aut] ,
Malgorzata Bogdan [aut] ,
Ewout van den Berg [aut],
Chiara Sabatti [aut],
Emmanuel Candes [aut],
Evan Patterson [aut],
Weijie Su [aut],
Jakub Kala [aut],
Krystyna Grzesiak [aut],
Mathurin Massias [aut], [...truncated...]
Maintainer: Johan Larsson <johan@jolars.co>
Diff between SLOPE versions 2.0.0 dated 2026-01-28 and 2.1.0 dated 2026-03-28
DESCRIPTION | 8 ++++---- MD5 | 36 ++++++++++++++++++------------------ NEWS.md | 28 +++++++++++++++++++++++++--- R/cv.R | 2 ++ R/data.R | 3 --- R/refit.R | 30 +++++++++++++++++++++++++----- R/score.R | 21 ++++++++++++++++----- R/train_slope.R | 2 ++ inst/doc/introduction.html | 4 ++-- inst/doc/models.html | 4 ++-- inst/doc/solvers.html | 8 ++++---- man/bodyfat.Rd | 2 -- man/cvSLOPE.Rd | 1 + man/heart.Rd | 2 -- man/refit.Rd | 10 ++++++---- man/trainSLOPE.Rd | 1 + man/wine.Rd | 2 -- tests/testthat/test-multinomial.R | 16 ++++++++++++++++ tests/testthat/test-summary.R | 18 +++++++++++++++--- 19 files changed, 139 insertions(+), 59 deletions(-)
Title: Efficient Rolling / Windowed Operations
Description: Provides fast and efficient routines for
common rolling / windowed operations. Routines for the
efficient computation of windowed mean, median,
sum, product, minimum, maximum, standard deviation
and variance are provided.
Author: Kevin Ushey [aut, cre]
Maintainer: Kevin Ushey <kevinushey@gmail.com>
Diff between RcppRoll versions 0.3.1 dated 2024-07-07 and 0.3.2 dated 2026-03-28
DESCRIPTION | 9 +++++---- MD5 | 4 ++-- NEWS.md | 4 ++++ 3 files changed, 11 insertions(+), 6 deletions(-)
Title: Qualitative Comparative Analysis
Description: An extensive set of functions to perform Qualitative Comparative Analysis:
crisp sets ('csQCA'), temporal ('tQCA'), multi-value ('mvQCA')
and fuzzy sets ('fsQCA'), using a GUI - graphical user interface.
'QCA' is a methodology that bridges the qualitative and quantitative
divide in social science research. It uses a Boolean minimization
algorithm, resulting in a minimal causal configuration associated
with a given phenomenon.
Author: Adrian Dusa [aut, cre, cph] ,
Ciprian Paduraru [ctb] ,
Alrik Thiem [aut]
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between QCA versions 3.23 dated 2024-12-04 and 3.24 dated 2026-03-28
QCA-3.23/QCA/R/combint.R |only QCA-3.23/QCA/R/runGUI.R |only QCA-3.23/QCA/build |only QCA-3.23/QCA/inst/gui |only QCA-3.23/QCA/inst/staticdocs |only QCA-3.23/QCA/man/runGUI.Rd |only QCA-3.23/QCA/src/Makevars |only QCA-3.24/QCA/DESCRIPTION | 35 - QCA-3.24/QCA/MD5 | 279 ++++---------- QCA-3.24/QCA/NAMESPACE | 3 QCA-3.24/QCA/R/XYplot.R | 2 QCA-3.24/QCA/R/Xplot.R | 2 QCA-3.24/QCA/R/allExpressions.R | 2 QCA-3.24/QCA/R/calibrate.R | 2 QCA-3.24/QCA/R/causalChain.R | 56 ++ QCA-3.24/QCA/R/complexity.R | 2 QCA-3.24/QCA/R/createMatrix.R | 2 QCA-3.24/QCA/R/dimnames.R | 2 QCA-3.24/QCA/R/findRows.R | 2 QCA-3.24/QCA/R/findSubsets.R | 2 QCA-3.24/QCA/R/findSupersets.R | 2 QCA-3.24/QCA/R/findTh.R | 2 QCA-3.24/QCA/R/findmin.R | 81 +--- QCA-3.24/QCA/R/fuzzyand.R | 2 QCA-3.24/QCA/R/fuzzyor.R | 2 QCA-3.24/QCA/R/generate.R | 2 QCA-3.24/QCA/R/getRow.R | 2 QCA-3.24/QCA/R/getSolution.R | 4 QCA-3.24/QCA/R/makeChart.R | 6 QCA-3.24/QCA/R/minimize.R | 30 + QCA-3.24/QCA/R/modelFit.R | 6 QCA-3.24/QCA/R/onAttach.R | 6 QCA-3.24/QCA/R/onUnload.R | 2 QCA-3.24/QCA/R/panel.R | 2 QCA-3.24/QCA/R/pof.R | 109 +++-- QCA-3.24/QCA/R/pofind.R | 2 QCA-3.24/QCA/R/print.R | 6 QCA-3.24/QCA/R/removeRedundants.R | 2 QCA-3.24/QCA/R/replaceCategories.R | 2 QCA-3.24/QCA/R/retention.R | 2 QCA-3.24/QCA/R/rowDominance.R | 2 QCA-3.24/QCA/R/solveChart.R | 2 QCA-3.24/QCA/R/sortMatrix.R | 2 QCA-3.24/QCA/R/sortVector.R | 2 QCA-3.24/QCA/R/string.R | 2 QCA-3.24/QCA/R/superSubset.R | 6 QCA-3.24/QCA/R/truthTable.R | 19 QCA-3.24/QCA/R/verifyQCA.R | 2 QCA-3.24/QCA/R/writeSolution.R | 2 QCA-3.24/QCA/cleanup |only QCA-3.24/QCA/cleanup.win |only QCA-3.24/QCA/configure |only QCA-3.24/QCA/configure.win |only QCA-3.24/QCA/data/HarKem.rda |binary QCA-3.24/QCA/data/LC.rda |binary QCA-3.24/QCA/data/LF.rda |binary QCA-3.24/QCA/data/LM.rda |binary QCA-3.24/QCA/data/d.HK.rda |binary QCA-3.24/QCA/data/d.partybans.rda |binary QCA-3.24/QCA/inst/ChangeLog | 14 QCA-3.24/QCA/man/NF.Rd | 2 QCA-3.24/QCA/man/QCA_internal.Rd | 3 QCA-3.24/QCA/man/QCA_package.Rd | 6 QCA-3.24/QCA/man/causalChain.Rd | 4 QCA-3.24/QCA/man/chartFunctions.Rd | 14 QCA-3.24/QCA/man/implicantMatrixFunctions.Rd | 2 QCA-3.24/QCA/man/minimize.Rd | 11 QCA-3.24/QCA/man/subsetsAndSupersets.Rd | 2 QCA-3.24/QCA/src/CCubes.c | 516 ++++++++++++++++++--------- QCA-3.24/QCA/src/CCubes.h | 11 QCA-3.24/QCA/src/QCA.c | 377 ++++++++++--------- QCA-3.24/QCA/src/consistency.c | 2 QCA-3.24/QCA/src/consistent_solution.c | 21 - QCA-3.24/QCA/src/find_consistent_models.c | 36 + QCA-3.24/QCA/src/find_models.c | 231 +++++++++--- QCA-3.24/QCA/src/generate_matrix.c | 2 QCA-3.24/QCA/src/registerDynamicSymbol.c | 7 QCA-3.24/QCA/src/row_dominance.c | 4 QCA-3.24/QCA/src/row_dominance.h | 2 QCA-3.24/QCA/src/solvePIchart_gurobi.c |only QCA-3.24/QCA/src/solvePIchart_gurobi.h |only QCA-3.24/QCA/src/solvePIchart_lagrangian.c |only QCA-3.24/QCA/src/solvePIchart_lagrangian.h |only QCA-3.24/QCA/src/sort_cols.c | 2 QCA-3.24/QCA/src/sort_matrix.c | 2 QCA-3.24/QCA/src/super_rows.c | 2 QCA-3.24/QCA/src/truthTable.c | 2 QCA-3.24/QCA/src/utils.c | 248 +++++------- QCA-3.24/QCA/src/utils.h | 78 +--- QCA-3.24/QCA/tools |only 90 files changed, 1290 insertions(+), 1013 deletions(-)
Title: Partial Least Squares Regression for Generalized Linear Models
Description: Provides (weighted) Partial least squares Regression for generalized linear models and repeated k-fold cross-validation of such models using various criteria <doi:10.48550/arXiv.1810.01005>. It allows for missing data in the explanatory variables. Bootstrap confidence intervals constructions are also available.
Author: Frederic Bertrand [cre, aut] ,
Myriam Maumy-Bertrand [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between plsRglm versions 1.6.0 dated 2025-09-12 and 1.7.0 dated 2026-03-28
plsRglm-1.6.0/plsRglm/inst/doc/plsRglm-manual.pdf |only plsRglm-1.6.0/plsRglm/inst/doc/plsRglm-manual.pdf.asis |only plsRglm-1.6.0/plsRglm/inst/doc/plsRglm.pdf |only plsRglm-1.6.0/plsRglm/inst/doc/plsRglm.pdf.asis |only plsRglm-1.6.0/plsRglm/vignettes/plsRglm-manual.pdf.asis |only plsRglm-1.6.0/plsRglm/vignettes/plsRglm.pdf.asis |only plsRglm-1.7.0/plsRglm/DESCRIPTION | 25 plsRglm-1.7.0/plsRglm/MD5 | 142 + plsRglm-1.7.0/plsRglm/NAMESPACE | 25 plsRglm-1.7.0/plsRglm/NEWS.md | 10 plsRglm-1.7.0/plsRglm/R/PLS_glm.R | 450 ++--- plsRglm-1.7.0/plsRglm/R/PLS_glm_formula.R | 476 ++--- plsRglm-1.7.0/plsRglm/R/PLS_glm_kfoldcv.R | 18 plsRglm-1.7.0/plsRglm/R/PLS_glm_kfoldcv_formula.R | 14 plsRglm-1.7.0/plsRglm/R/PLS_glm_wvc.R | 132 - plsRglm-1.7.0/plsRglm/R/PLS_lm.R | 41 plsRglm-1.7.0/plsRglm/R/RcppExports.R |only plsRglm-1.7.0/plsRglm/R/bootpls.R | 17 plsRglm-1.7.0/plsRglm/R/bootplsglm.R | 38 plsRglm-1.7.0/plsRglm/R/classbiplot.R |only plsRglm-1.7.0/plsRglm/R/coefs.plsRglm.R | 4 plsRglm-1.7.0/plsRglm/R/coefs.plsRglm.raw.R | 4 plsRglm-1.7.0/plsRglm/R/cv.plsRglm.R | 81 plsRglm-1.7.0/plsRglm/R/cv.plsRglmmodel.default.R | 6 plsRglm-1.7.0/plsRglm/R/cv.plsRglmmodel.formula.R | 6 plsRglm-1.7.0/plsRglm/R/cv.plsRmulti.R |only plsRglm-1.7.0/plsRglm/R/cv.plsRmultiModel.default.R |only plsRglm-1.7.0/plsRglm/R/cv.plsRmultiModel.formula.R |only plsRglm-1.7.0/plsRglm/R/cvtable.plsR.R | 53 plsRglm-1.7.0/plsRglm/R/cvtable.plsRglm.R | 43 plsRglm-1.7.0/plsRglm/R/glm_fit_backend.R |only plsRglm-1.7.0/plsRglm/R/kfolds2CVinfos_glm.R | 26 plsRglm-1.7.0/plsRglm/R/kfolds2CVinfos_lm.R | 12 plsRglm-1.7.0/plsRglm/R/permcoefs.plsRglm.R | 6 plsRglm-1.7.0/plsRglm/R/permcoefs.plsRglm.raw.R | 6 plsRglm-1.7.0/plsRglm/R/plsRglm.R | 18 plsRglm-1.7.0/plsRglm/R/plsRglmmodel.default.R | 18 plsRglm-1.7.0/plsRglm/R/plsRglmmodel.formula.R | 6 plsRglm-1.7.0/plsRglm/R/plsRmodel.default.R | 12 plsRglm-1.7.0/plsRglm/R/plsRmulti.R |only plsRglm-1.7.0/plsRglm/R/plsRmultiModel.default.R |only plsRglm-1.7.0/plsRglm/R/plsRmultiModel.formula.R |only plsRglm-1.7.0/plsRglm/R/plsRmulti_bootstrap_utils.R |only plsRglm-1.7.0/plsRglm/R/plsRmulti_resampling_utils.R |only plsRglm-1.7.0/plsRglm/R/plsRmulti_utils.R |only plsRglm-1.7.0/plsRglm/R/predict.plsRglmmodel.R | 45 plsRglm-1.7.0/plsRglm/R/predict.plsRmultiModel.R |only plsRglm-1.7.0/plsRglm/R/print.plsRmultiModel.R |only plsRglm-1.7.0/plsRglm/R/simul_data_YX.R | 8 plsRglm-1.7.0/plsRglm/R/summary.cv.plsRmultiModel.R |only plsRglm-1.7.0/plsRglm/R/tilt.bootplsglm.R | 9 plsRglm-1.7.0/plsRglm/R/utils_cv.R |only plsRglm-1.7.0/plsRglm/R/utils_pls_glm.R |only plsRglm-1.7.0/plsRglm/build/partial.rdb |binary plsRglm-1.7.0/plsRglm/build/vignette.rds |binary plsRglm-1.7.0/plsRglm/demo/pls.R | 820 +++++----- plsRglm-1.7.0/plsRglm/inst/CITATION | 8 plsRglm-1.7.0/plsRglm/inst/benchmarks |only plsRglm-1.7.0/plsRglm/inst/doc/getting-started.R |only plsRglm-1.7.0/plsRglm/inst/doc/getting-started.Rmd |only plsRglm-1.7.0/plsRglm/inst/doc/getting-started.html |only plsRglm-1.7.0/plsRglm/inst/doc/plsRglm.R |only plsRglm-1.7.0/plsRglm/inst/doc/plsRglm.Rmd |only plsRglm-1.7.0/plsRglm/inst/doc/plsRglm.html |only plsRglm-1.7.0/plsRglm/man/PLS_glm_wvc.Rd | 6 plsRglm-1.7.0/plsRglm/man/bootpls.Rd | 3 plsRglm-1.7.0/plsRglm/man/classbiplot.Rd |only plsRglm-1.7.0/plsRglm/man/coefs.plsRglm.Rd | 4 plsRglm-1.7.0/plsRglm/man/coefs.plsRglm.raw.Rd | 4 plsRglm-1.7.0/plsRglm/man/cv.plsRglm.Rd | 15 plsRglm-1.7.0/plsRglm/man/cv.plsRmulti.Rd |only plsRglm-1.7.0/plsRglm/man/permcoefs.plsRglm.Rd | 4 plsRglm-1.7.0/plsRglm/man/permcoefs.plsRglm.raw.Rd | 4 plsRglm-1.7.0/plsRglm/man/plsRglm-package.Rd | 4 plsRglm-1.7.0/plsRglm/man/plsRglm.Rd | 17 plsRglm-1.7.0/plsRglm/man/plsRmulti.Rd |only plsRglm-1.7.0/plsRglm/man/predict.plsRmultiModel.Rd |only plsRglm-1.7.0/plsRglm/man/simul_data_YX.Rd | 8 plsRglm-1.7.0/plsRglm/man/summary.cv.plsRmultiModel.Rd |only plsRglm-1.7.0/plsRglm/src |only plsRglm-1.7.0/plsRglm/tests/testthat/Rplots.pdf |only plsRglm-1.7.0/plsRglm/tests/testthat/test-classbiplot.R |only plsRglm-1.7.0/plsRglm/tests/testthat/test-fit-backend.R |only plsRglm-1.7.0/plsRglm/tests/testthat/test-glm-cv-aze.R | 18 plsRglm-1.7.0/plsRglm/tests/testthat/test-lm-cornell.R | 17 plsRglm-1.7.0/plsRglm/tests/testthat/test-pls-glm-helpers.R |only plsRglm-1.7.0/plsRglm/tests/testthat/test-pls-glm-shared-setup.R |only plsRglm-1.7.0/plsRglm/tests/testthat/test-pls-multi-resampling.R |only plsRglm-1.7.0/plsRglm/tests/testthat/test-pls-multi.R |only plsRglm-1.7.0/plsRglm/tests/testthat/test-predict-options.R | 24 plsRglm-1.7.0/plsRglm/tests/testthat/test-s3.R | 25 plsRglm-1.7.0/plsRglm/vignettes/getting-started.Rmd |only plsRglm-1.7.0/plsRglm/vignettes/plsRglm.Rmd |only 93 files changed, 1453 insertions(+), 1279 deletions(-)
Title: Non-Parametric Bayesian Multiple Imputation for Categorical Data
Description: These routines create multiple imputations of missing at random categorical data, and create multiply imputed synthesis of categorical data, with or without structural zeros. Imputations and syntheses are based on Dirichlet process mixtures of multinomial distributions, which is a non-parametric Bayesian modeling approach that allows for flexible joint modeling, described in Manrique-Vallier and Reiter (2014) <doi:10.1080/10618600.2013.844700>.
Author: Quanli Wang [aut],
Daniel Manrique-Vallier [aut],
Jerome P. Reiter [aut],
Jingchen Hu [aut, cre]
Maintainer: Jingchen Hu <jingchen.monika.hu@gmail.com>
Diff between NPBayesImputeCat versions 0.6 dated 2025-12-01 and 0.7 dated 2026-03-28
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- src/Makevars | 2 -- src/Makevars.win | 1 - src/SpecialFunctions.h | 6 +++--- 5 files changed, 13 insertions(+), 16 deletions(-)
More information about NPBayesImputeCat at CRAN
Permanent link
Title: Latent Interaction (and Moderation) Analysis in Structural
Equation Models (SEM)
Description: Estimation of interaction (i.e., moderation) effects between latent variables
in structural equation models (SEM).
The supported methods are:
The constrained approach (Algina & Moulder, 2001).
The unconstrained approach (Marsh et al., 2004).
The residual centering approach (Little et al., 2006).
The double centering approach (Lin et al., 2010).
The latent moderated structural equations (LMS) approach (Klein & Moosbrugger, 2000).
The quasi-maximum likelihood (QML) approach (Klein & Muthén, 2007)
The constrained- unconstrained, residual- and double centering- approaches
are estimated via 'lavaan' (Rosseel, 2012), whilst the LMS- and QML- approaches
are estimated via 'modsem' it self. Alternatively model can be
estimated via 'Mplus' (Muthén & Muthén, 1998-2017).
References:
Algina, J., & Moulder, B. C. (2001).
<doi:10.1207/S15328007SEM0801_3>.
"A note on estimating the Jöreskog-Yang model for latent variable interaction using 'LISREL' 8.3."
Klein, A., & Moosb [...truncated...]
Author: Kjell Solem Slupphaug [aut, cre] ,
Mehmet Mehmetoglu [ctb] ,
Matthias Mittner [ctb]
Maintainer: Kjell Solem Slupphaug <slupphaugkjell@gmail.com>
Diff between modsem versions 1.0.17 dated 2026-02-24 and 1.0.18 dated 2026-03-28
DESCRIPTION | 6 - MD5 | 26 ++--- R/modsem_mplus.R | 148 ++++++++++++++++++++++++------ R/plot_jn.R | 20 ++-- R/print_partable.R | 8 - R/reliablity_single_item.R | 67 +++++-------- R/simple_slopes.R | 88 +++++++++++------ R/tokenizer.R | 4 R/utils.R | 23 ++-- inst/doc/customize_plot_interactions.html | 2 inst/doc/observed_lms_qml.html | 19 ++- man/modsem_mplus.Rd | 3 src/mvnorm.cpp | 10 +- tests/testthat/test_simple_slopes.R | 6 + 14 files changed, 276 insertions(+), 154 deletions(-)
Title: Various Methods for the Two Sample Problem in D>1 Dimensions
Description: The routine twosample_test() in this package runs the
two-sample test using various test statistic for multivariate data.
The user can also run several tests and then find a p value adjusted for simultaneous inference.
The p values are found via permutation or via the parametric bootstrap.
The routine twosample_power() allows the estimation of the power of the tests.
The routine run.studies() allows a user to quickly study the power of a new method and
how it compares to those included in the package.
For details of the methods and references see the included vignettes.
Author: Wolfgang Rolke [aut, cre]
Maintainer: Wolfgang Rolke <wolfgang.rolke@upr.edu>
Diff between MD2sample versions 1.1.1 dated 2026-02-02 and 1.2.0 dated 2026-03-28
DESCRIPTION | 8 - MD5 | 27 ++-- NEWS.md | 3 R/RcppExports.R | 10 + data/power_studies_results.rda |binary inst/doc/CaseStudies.html | 68 +++++----- inst/doc/MD2sample.R | 50 ++++---- inst/doc/MD2sample.Rmd | 56 +++++---- inst/doc/MD2sample.html | 255 ++++++++++++++++++++++++----------------- man/mmdagg.Rd |only src/RcppExports.cpp | 13 ++ src/TS_cont.cpp | 7 - src/mmdagg.cpp |only src/mmdagg.h |only vignettes/MD2sample.Rmd | 56 +++++---- vignettes/MD2sample.bib | 9 + 16 files changed, 335 insertions(+), 227 deletions(-)
Title: A Tool for Calculating Stoichiometric Equilibrium Constants (Ks)
for Seawater
Description: A unified software package simultaneously implemented in 'Python', 'R', and 'Matlab' providing a uniform and internally-consistent way of calculating stoichiometric equilibrium constants in modern and palaeo seawater as a function of temperature, salinity, pressure and the concentration of magnesium, calcium, sulphate, and fluorine.
Author: Dennis Mayk [aut, cre]
Maintainer: Dennis Mayk <dm807@cantab.ac.uk>
Diff between kgen versions 0.3.0 dated 2023-12-19 and 1.1.1 dated 2026-03-28
kgen-0.3.0/kgen/R/pymyami.R |only kgen-0.3.0/kgen/man/install_pymyami.Rd |only kgen-0.3.0/kgen/man/is_linux.Rd |only kgen-0.3.0/kgen/man/is_osx.Rd |only kgen-0.3.0/kgen/man/is_windows.Rd |only kgen-0.3.0/kgen/man/mc_exists.Rd |only kgen-0.3.0/kgen/man/miniconda_conda.Rd |only kgen-0.3.0/kgen/man/miniconda_path.Rd |only kgen-0.3.0/kgen/man/miniconda_path_default.Rd |only kgen-0.3.0/kgen/man/pymyami_exists.Rd |only kgen-1.1.1/kgen/DESCRIPTION | 18 - kgen-1.1.1/kgen/MD5 | 37 +- kgen-1.1.1/kgen/NAMESPACE | 2 kgen-1.1.1/kgen/NEWS.md | 28 +- kgen-1.1.1/kgen/R/main.R | 138 +++++----- kgen-1.1.1/kgen/R/utility.R | 87 +++--- kgen-1.1.1/kgen/R/zzz.R | 34 ++ kgen-1.1.1/kgen/inst/coefficients/polynomial_coefficients.json | 2 kgen-1.1.1/kgen/man/calc_K.Rd | 56 ++-- kgen-1.1.1/kgen/man/calc_pressure_correction.Rd | 3 kgen-1.1.1/kgen/man/calc_seawater_correction.Rd | 7 kgen-1.1.1/kgen/man/kgen_poly.Rd | 4 kgen-1.1.1/kgen/tests/testthat/setup.R |only kgen-1.1.1/kgen/tests/testthat/test-calc_ks.R | 13 kgen-1.1.1/kgen/tests/testthat/test-pressure_correction.R | 7 25 files changed, 251 insertions(+), 185 deletions(-)
Title: Iterated Racing for Automatic Algorithm Configuration
Description: Iterated race is an extension of the Iterated F-race method for
the automatic configuration of optimization algorithms, that is,
(offline) tuning their parameters by finding the most appropriate
settings given a set of instances of an optimization problem.
M. López-Ibáñez, J. Dubois-Lacoste, L. Pérez Cáceres, T. Stützle,
and M. Birattari (2016) <doi:10.1016/j.orp.2016.09.002>.
Author: Manuel Lopez-Ibanez [aut, cre] ,
Jeremie Dubois-Lacoste [aut],
Leslie Perez Caceres [aut],
Thomas Stuetzle [aut],
Mauro Birattari [aut],
Eric Yuan [ctb],
Prasanna Balaprakash [ctb],
Nguyen Dang [ctb]
Maintainer: Manuel Lopez-Ibanez <manuel.lopez-ibanez@manchester.ac.uk>
Diff between irace versions 4.4.0 dated 2026-02-02 and 4.4.1 dated 2026-03-28
DESCRIPTION | 8 ++-- MD5 | 24 +++++++------- NEWS.md | 6 ++- R/aaa.R | 72 ++++++++++++++++++++++++++++++++++++++++++ R/irace.R | 2 - R/main.R | 7 +--- R/version.R | 2 - build/partial.rdb |binary inst/doc/irace-package.pdf |binary man/irace.Rd | 4 +- man/irace_cmdline.Rd | 4 +- man/irace_main.Rd | 4 +- tests/testthat/test-capping.R | 2 + 13 files changed, 104 insertions(+), 31 deletions(-)
Title: Download Map Data from GISCO API - Eurostat
Description: Tools to download data from the GISCO (Geographic Information
System of the Commission) Eurostat database
<https://ec.europa.eu/eurostat/web/gisco>. Global and European map
data available. This package is in no way officially related to or
endorsed by Eurostat.
Author: Diego Hernangomez [aut, cre, cph] ,
Eurostat [cph] ,
EuroGeographics [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between giscoR versions 1.0.1 dated 2026-01-23 and 1.1.0 dated 2026-03-28
giscoR-1.0.1/giscoR/inst/doc/giscoR.Rmd |only giscoR-1.0.1/giscoR/vignettes/africa-1.png |only giscoR-1.0.1/giscoR/vignettes/country-1.png |only giscoR-1.0.1/giscoR/vignettes/giscoR-1.png |only giscoR-1.0.1/giscoR/vignettes/giscoR.Rmd |only giscoR-1.1.0/giscoR/DESCRIPTION | 18 giscoR-1.1.0/giscoR/MD5 | 184 +- giscoR-1.1.0/giscoR/NEWS.md | 19 giscoR-1.1.0/giscoR/R/data.R | 12 giscoR-1.1.0/giscoR/R/docs.R | 6 giscoR-1.1.0/giscoR/R/gisco-address-api.R | 1 giscoR-1.1.0/giscoR/R/gisco-bulk-download.R | 12 giscoR-1.1.0/giscoR/R/gisco-cache.R | 745 ++++------ giscoR-1.1.0/giscoR/R/gisco-check-access.R | 2 giscoR-1.1.0/giscoR/R/gisco-get-cached-db.R | 641 ++++---- giscoR-1.1.0/giscoR/R/gisco-get-census.R | 1 giscoR-1.1.0/giscoR/R/gisco-get-coastal-lines.R | 3 giscoR-1.1.0/giscoR/R/gisco-get-communes.R | 8 giscoR-1.1.0/giscoR/R/gisco-get-countries.R | 458 +++--- giscoR-1.1.0/giscoR/R/gisco-get-grid.R | 3 giscoR-1.1.0/giscoR/R/gisco-get-healthcare.R | 4 giscoR-1.1.0/giscoR/R/gisco-get-lau.R | 6 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Title: Fuzzy Similarity in Species Distributions
Description: Functions to compute fuzzy versions of species occurrence patterns based on presence-absence data (including inverse distance interpolation, trend surface analysis, and prevalence-independent favourability obtained from probability of presence), as well as pair-wise fuzzy similarity (based on fuzzy logic versions of commonly used similarity indices) among those occurrence patterns. Includes also functions for model consensus and comparison (overlap and fuzzy similarity, fuzzy loss, fuzzy gain), and for data preparation, such as obtaining unique abbreviations of species names, defining the background region, cleaning and gridding (thinning) point occurrence data onto raster maps, selecting among (pseudo)absences to address survey bias, converting species lists (long format) to presence-absence tables (wide format), transposing part of a data frame, selecting relevant variables for models, assessing the false discovery rate, or analysing and dealing with multicollinearity. Initially desc [...truncated...]
Author: A. Marcia Barbosa [aut],
Alba Estrada [ctb],
Paul Melloy [ctb],
Jose Carlos Guerrero [fnd],
A. Marcia Barbosa [cre]
Maintainer: A. Marcia Barbosa <ana.marcia.barbosa@gmail.com>
Diff between fuzzySim versions 4.48 dated 2026-02-17 and 4.50 dated 2026-03-28
DESCRIPTION | 8 ++-- MD5 | 40 ++++++++++----------- NAMESPACE | 8 ++-- NEWS.md | 37 +++++++++++++++++++ R/Fav.R | 6 ++- R/corSelect.R | 17 +++++---- R/distMat.R | 39 +++++++++++--------- R/getRegion.R | 90 ++++++++++++++++++++++++------------------------ R/gridRecords.R | 12 ++++-- R/selectAbsences.R | 9 ++++ data/rotif.env.rda |binary data/rotifers.rda |binary man/Fav.Rd | 20 +++++----- man/cleanCoords.Rd | 2 - man/corSelect.Rd | 7 ++- man/distMat.Rd | 6 +-- man/fuzzySim-package.Rd | 4 +- man/getRegion.Rd | 18 +++++---- man/gridRecords.Rd | 6 +-- man/selectAbsences.Rd | 41 ++++++++++++++++++--- man/summaryWald.Rd | 12 ++---- 21 files changed, 235 insertions(+), 147 deletions(-)
Title: Fast Agent-Based Epi Models
Description: A flexible framework for Agent-Based Models (ABM), the 'epiworldR' package provides methods for prototyping disease outbreaks and transmission models using a 'C++' backend, making it very fast. It supports multiple epidemiological models, including the Susceptible-Infected-Susceptible (SIS), Susceptible-Infected-Removed (SIR), Susceptible-Exposed-Infected-Removed (SEIR), and others, involving arbitrary mitigation policies and multiple-disease models. Users can specify infectiousness/susceptibility rates as a function of agents' features, providing great complexity for the model dynamics. Furthermore, 'epiworldR' is ideal for simulation studies featuring large populations.
Author: George Vega Yon [aut, cre] ,
Derek Meyer [aut] ,
Andrew Pulsipher [aut] ,
Susan Holmes [rev] ,
Abinash Satapathy [rev] ,
Carinogurjao [rev],
Centers for Disease Control and Prevention [fnd]
Maintainer: George Vega Yon <g.vegayon@gmail.com>
Diff between epiworldR versions 0.13.0.0 dated 2026-03-12 and 0.14.0.0 dated 2026-03-28
epiworldR-0.13.0.0/epiworldR/inst/doc/advanced-modeling.Rmd |only epiworldR-0.13.0.0/epiworldR/inst/doc/getting-started.Rmd |only epiworldR-0.13.0.0/epiworldR/inst/doc/implementation.Rmd |only epiworldR-0.13.0.0/epiworldR/inst/doc/likelihood-free-mcmc.Rmd |only epiworldR-0.13.0.0/epiworldR/inst/doc/mixing.Rmd |only epiworldR-0.13.0.0/epiworldR/inst/doc/run-multiple.Rmd |only epiworldR-0.13.0.0/epiworldR/vignettes/advanced-modeling.Rmd |only epiworldR-0.13.0.0/epiworldR/vignettes/getting-started.Rmd |only epiworldR-0.13.0.0/epiworldR/vignettes/implementation.Rmd |only epiworldR-0.13.0.0/epiworldR/vignettes/likelihood-free-mcmc.Rmd |only epiworldR-0.13.0.0/epiworldR/vignettes/mixing.Rmd |only epiworldR-0.13.0.0/epiworldR/vignettes/run-multiple.Rmd |only epiworldR-0.14.0.0/epiworldR/DESCRIPTION | 11 epiworldR-0.14.0.0/epiworldR/MD5 | 166 - epiworldR-0.14.0.0/epiworldR/NEWS.md | 12 epiworldR-0.14.0.0/epiworldR/R/LFMCMC.R | 6 epiworldR-0.14.0.0/epiworldR/R/functions-renamed.R | 4 epiworldR-0.14.0.0/epiworldR/R/make_saver.R | 9 epiworldR-0.14.0.0/epiworldR/R/model-methods.R | 6 epiworldR-0.14.0.0/epiworldR/README.md | 64 epiworldR-0.14.0.0/epiworldR/build/vignette.rds |binary epiworldR-0.14.0.0/epiworldR/inst/doc/advanced-modeling.R | 62 epiworldR-0.14.0.0/epiworldR/inst/doc/advanced-modeling.html | 516 ++--- epiworldR-0.14.0.0/epiworldR/inst/doc/advanced-modeling.qmd |only epiworldR-0.14.0.0/epiworldR/inst/doc/getting-started.R | 58 epiworldR-0.14.0.0/epiworldR/inst/doc/getting-started.html | 907 ++++------ epiworldR-0.14.0.0/epiworldR/inst/doc/getting-started.qmd |only epiworldR-0.14.0.0/epiworldR/inst/doc/implementation.html | 294 --- epiworldR-0.14.0.0/epiworldR/inst/doc/implementation.qmd |only epiworldR-0.14.0.0/epiworldR/inst/doc/likelihood-free-mcmc.R | 50 epiworldR-0.14.0.0/epiworldR/inst/doc/likelihood-free-mcmc.html | 637 ++----- epiworldR-0.14.0.0/epiworldR/inst/doc/likelihood-free-mcmc.qmd |only epiworldR-0.14.0.0/epiworldR/inst/doc/mixing.R | 31 epiworldR-0.14.0.0/epiworldR/inst/doc/mixing.html | 578 ++---- epiworldR-0.14.0.0/epiworldR/inst/doc/mixing.qmd |only epiworldR-0.14.0.0/epiworldR/inst/doc/run-multiple.R | 26 epiworldR-0.14.0.0/epiworldR/inst/doc/run-multiple.html | 380 +--- epiworldR-0.14.0.0/epiworldR/inst/doc/run-multiple.qmd |only epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/agent-bones.hpp | 43 epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/agent-events-meat.hpp | 44 epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/agent-meat-state.hpp | 4 epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/agent-meat.hpp | 119 - epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/config.hpp | 28 epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/database-bones.hpp | 20 epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/entity-bones.hpp | 8 epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/entity-distribute-meat.hpp | 6 epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/entity-meat.hpp | 1 epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/epiworld.hpp | 2 epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/misc.hpp | 33 epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/model-bones.hpp | 90 epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/model-meat-print.hpp | 6 epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/model-meat.hpp | 328 +-- epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/models/diffnet.hpp | 4 epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/models/measlesmixing.hpp | 264 -- epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/models/measlesmixingriskquarantine.hpp | 273 --- epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/models/measlesschool.hpp | 215 -- epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/models/seir.hpp | 63 epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/models/seirconnected.hpp | 104 - 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epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/tool-bones.hpp | 49 epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/tool-meat.hpp | 99 - epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/tools/vaccine.hpp | 8 epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/userdata-bones.hpp | 2 epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/virus-bones.hpp | 55 epiworldR-0.14.0.0/epiworldR/inst/include/epiworld/virus-meat.hpp | 111 - epiworldR-0.14.0.0/epiworldR/man/epiworldR-deprecated.Rd | 4 epiworldR-0.14.0.0/epiworldR/man/figures/README-logit-model-1.png |binary epiworldR-0.14.0.0/epiworldR/man/figures/README-multiple-example-1.png |binary epiworldR-0.14.0.0/epiworldR/man/figures/README-seir-conn-figures-1.png |binary epiworldR-0.14.0.0/epiworldR/man/figures/README-seir-conn-figures-2.png |binary epiworldR-0.14.0.0/epiworldR/man/figures/README-seir-conn-figures-3.png |binary epiworldR-0.14.0.0/epiworldR/man/figures/README-sir-figures-1.png |binary epiworldR-0.14.0.0/epiworldR/man/figures/README-sir-figures-2.png |binary epiworldR-0.14.0.0/epiworldR/man/figures/README-transmission-net-1.png |binary epiworldR-0.14.0.0/epiworldR/man/run_multiple.Rd | 2 epiworldR-0.14.0.0/epiworldR/src/model.cpp | 2 epiworldR-0.14.0.0/epiworldR/src/tool.cpp | 12 epiworldR-0.14.0.0/epiworldR/src/virus.cpp | 16 epiworldR-0.14.0.0/epiworldR/vignettes/advanced-modeling.qmd |only epiworldR-0.14.0.0/epiworldR/vignettes/getting-started.qmd |only epiworldR-0.14.0.0/epiworldR/vignettes/implementation.qmd |only epiworldR-0.14.0.0/epiworldR/vignettes/likelihood-free-mcmc.qmd |only epiworldR-0.14.0.0/epiworldR/vignettes/mixing.qmd |only epiworldR-0.14.0.0/epiworldR/vignettes/run-multiple.qmd |only 96 files changed, 2442 insertions(+), 4511 deletions(-)