Title: Computation of Variance-Based Sensitivity Indices
Description: It allows to rapidly compute, bootstrap and plot up to fourth-order Sobol'-based sensitivity indices using several state-of-the-art first and total-order estimators. Sobol' indices can be computed either for models that yield a scalar as a model output or for systems of differential equations. The package also provides a suit of benchmark tests functions and several options to obtain publication-ready figures of the model output uncertainty and sensitivity-related analysis. An overview of the package can be found in Puy et al. (2022) <doi:10.18637/jss.v102.i05>.
Author: Arnald Puy [aut, cre] ,
Bertrand Ioos [ctb] ,
Gilles Pujol [ctb] ,
RStudio [cph]
Maintainer: Arnald Puy <arnald.puy@pm.me>
Diff between sensobol versions 1.1.6 dated 2025-07-24 and 1.1.8 dated 2026-04-05
DESCRIPTION | 6 MD5 | 34 ++-- NEWS.md | 47 ++++++ R/discrepancy_ersatz.R | 2 R/load_packages.R | 17 -- R/plot_sobol.R | 2 R/sensobol-package.R | 2 R/sobol_convergence.R | 33 +++- R/sobol_indices.R | 37 ++-- R/sobol_matrices.R | 3 R/test_functions.R | 12 - R/vars_matrices.R | 4 R/vars_to.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/sensobol.pdf |binary tests/testthat/test-sobol_boot.R | 266 ++++++++++++++++++++++++++++++++++- tests/testthat/test-sobol_matrices.R | 2 18 files changed, 406 insertions(+), 63 deletions(-)
Title: Estimation and Visualization of Linear Panel Event Studies
Description: Estimates linear panel event study models. Plots coefficients following the recommendations in Freyaldenhoven et al. (2021) <doi:10.3386/w29170>. Includes sup-t bands, testing for key hypotheses, least wiggly path through the Wald region. Allows instrumental variables estimation following Freyaldenhoven et al. (2019) <doi:10.1257/aer.20180609>.
Author: Simon Freyaldenhoven [aut],
Christian Hansen [aut],
Jorge Perez Perez [aut],
Jesse Shapiro [aut],
Veli Andirin [aut],
Richard Calvo [aut],
Santiago Hermo [aut, cre],
Nathan Schor [aut],
Emily Wang [aut],
JMSLab [cph],
Ryan Kessler [cph]
Maintainer: Santiago Hermo <santiago.hermo@monash.edu>
Diff between eventstudyr versions 1.1.4 dated 2025-07-03 and 1.2.0 dated 2026-04-05
DESCRIPTION | 12 - MD5 | 52 ++--- NAMESPACE | 11 + R/AddMeans.R | 9 - R/AddSuptBand.R | 20 +- R/ComputeFirstDifferences.R | 45 ++--- R/ComputeShifts.R | 18 -- R/EventStudy.R | 105 ++++++++---- R/EventStudyFHS.R | 51 +++++ R/EventStudyOLS.R | 23 ++ R/EventStudyPlot.R | 41 ++-- R/PrepareModelFormula.R | 124 ++++++++++++-- R/SmPathHelpers.R | 6 R/TestLinear.R | 11 - README.md | 3 inst/doc/documentation.R | 12 - inst/doc/documentation.Rmd | 12 - inst/doc/documentation.html | 227 +++++++++++++------------- man/EventStudy.Rd | 27 ++- tests/testthat/test-AddCIs.R | 2 tests/testthat/test-AddMeans.R | 6 tests/testthat/test-ComputeFirstDifferences.R | 18 +- tests/testthat/test-ComputeShifts.R | 39 ++-- tests/testthat/test-EventStudy.R | 102 ++++++----- tests/testthat/test-EventStudyFHS.R | 83 ++++++--- tests/testthat/test-EventStudyOLS.R | 98 ++++++++--- vignettes/documentation.Rmd | 12 - 27 files changed, 759 insertions(+), 410 deletions(-)
Title: World Development Indicators and Other World Bank Data
Description: Search and download data from over 40 databases hosted by the World Bank, including the World Development Indicators ('WDI'), International Debt Statistics, Doing Business, Human Capital Index, and Sub-national Poverty indicators.
Author: Vincent Arel-Bundock [aut, cre] ,
Etienne Bacher [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between WDI versions 2.7.9 dated 2025-03-22 and 2.7.10 dated 2026-04-05
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 6 ++++++ R/WDI.R | 2 +- data/WDI_data.RData |binary 5 files changed, 16 insertions(+), 10 deletions(-)
Title: Design-Adjusted Inference for Pathogen Lineage Surveillance
Description: Provides tools for optimizing sequencing resource allocation
and estimating pathogen lineage prevalence under real-world genomic
surveillance conditions. Implements constrained allocation optimization
for limited sequencing capacity across multiple regions and sample
sources. Includes Horvitz-Thompson and post-stratified estimators that
account for unequal sequencing rates, delay-adjusted nowcasting for
right-censored reporting data, and combined design-weighted
delay-corrected inference with uncertainty propagation.
Author: Cuiwei Gao [aut, cre, cph]
Maintainer: Cuiwei Gao <48gaocuiwei@gmail.com>
Diff between survinger versions 0.1.0 dated 2026-04-02 and 0.1.1 dated 2026-04-05
DESCRIPTION | 6 - LICENSE | 4 MD5 | 12 +- NEWS.md | 7 + inst/CITATION | 16 +-- tests/testthat/test-03-prevalence.R | 10 +- tests/testthat/test-12-validation.R | 164 ++++++++++++++++++------------------ 7 files changed, 115 insertions(+), 104 deletions(-)
Title: Reconstructing the Regulatory Programs of Target Genes in
scRNA-Seq Data
Description: Implementation of the scregclust algorithm
described in Larsson, Held, et al. (2024) <doi:10.1038/s41467-024-53954-3>
which reconstructs regulatory programs of target genes in scRNA-seq data.
Target genes are clustered into modules and each module is associated with a linear
model describing the regulatory program.
Author: Felix Held [aut, cre] ,
Ida Larsson [aut] ,
Sven Nelander [aut] ,
Andre Armatowski [ctb]
Maintainer: Felix Held <felix.held@gmail.com>
Diff between scregclust versions 0.2.2 dated 2025-07-27 and 0.2.3 dated 2026-04-05
DESCRIPTION | 13 +++++++------ MD5 | 10 +++++----- NEWS.md | 5 +++++ R/sysdata.rda |binary build/partial.rdb |binary src/optim.cpp | 2 +- 6 files changed, 18 insertions(+), 12 deletions(-)
Title: Multilevel Analysis of Individual Heterogeneity and
Discriminatory Accuracy
Description: Provides a comprehensive toolkit for conducting Multilevel Analysis
of Individual Heterogeneity and Discriminatory Accuracy (MAIHDA). Methods
are described in Merlo (2018) <doi:10.1016/j.socscimed.2017.12.018> and
Evans et al. (2018) <doi:10.1016/j.socscimed.2017.11.011>. Automatically
generates intersectional strata, fits analytical models, extracts statistics,
and produces visualizations.
Author: Hamid Bulut [aut, cre]
Maintainer: Hamid Bulut <me@hamidbulut.com>
Diff between MAIHDA versions 0.1.0 dated 2026-04-03 and 0.1.7 dated 2026-04-05
DESCRIPTION | 27 +-- MD5 | 71 +++++----- NAMESPACE | 75 +++++----- NEWS.md | 24 ++- R/calculate_pvc.R | 176 ++++++++++++++++-------- R/fit_maihda.R | 230 ++++++++++++++++---------------- R/maihda_health_data.R |only R/maihda_sim_data.R |only R/make_strata.R | 32 ++-- R/run_app.R |only R/summary_maihda.R | 4 README.md | 30 +++- build/partial.rdb |binary build/vignette.rds |binary data/maihda_health_data.rda |only inst/doc/introduction.R | 146 ++++++++------------ inst/doc/introduction.Rmd | 175 +++++++++--------------- inst/doc/introduction.html | 268 ++++++++++++++++---------------------- inst/shiny |only man/MAIHDA-package.Rd | 4 man/add_stratum_labels.Rd | 40 ++--- man/bootstrap_pvc.Rd | 48 +++--- man/bootstrap_vpc.Rd | 52 +++---- man/calculate_pvc.Rd | 142 ++++++++++---------- man/extract_between_variance.Rd | 36 ++--- man/maihda_health_data.Rd |only man/maihda_sim_data.Rd | 95 ++++--------- man/make_strata.Rd | 2 man/plot_caterpillar.Rd | 40 ++--- man/plot_obs_vs_shrunken.Rd | 40 ++--- man/plot_predicted_strata.Rd | 44 +++--- man/plot_vpc.Rd | 36 ++--- man/print.maihda_model.Rd | 38 ++--- man/print.maihda_strata.Rd | 38 ++--- man/print.maihda_summary.Rd | 38 ++--- man/print.pvc_result.Rd | 38 ++--- man/run_maihda_app.Rd |only man/stepwise_pcv.Rd |only tests/testthat.R | 16 +- tests/testthat/test-health_data.R |only vignettes/introduction.Rmd | 175 +++++++++--------------- 41 files changed, 1050 insertions(+), 1130 deletions(-)
Title: Tidy Dataframes and Expressions with Statistical Details
Description: Utilities for producing dataframes with rich details for the
most common types of statistical approaches and tests: parametric,
nonparametric, robust, and Bayesian t-test, one-way ANOVA, correlation
analyses, contingency table analyses, and meta-analyses. The functions
are pipe-friendly and provide a consistent syntax to work with tidy
data. These dataframes additionally contain expressions with
statistical details, and can be used in graphing packages. This
package also forms the statistical processing backend for
'ggstatsplot'. References: Patil (2021) <doi:10.21105/joss.03236>.
Author: Indrajeet Patil [cre, aut, cph]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between statsExpressions versions 1.7.3 dated 2026-02-05 and 1.7.4 dated 2026-04-05
DESCRIPTION | 12 +- MD5 | 54 +++++------ NEWS.md | 8 + R/contingency-table.R | 6 - R/globals.R | 110 ++++++++++++------------ R/oneway-anova.R | 8 + R/pairwise-comparisons.R | 2 R/tidy-model-expressions.R | 14 +++ README.md | 8 - build/vignette.rds |binary inst/doc/statsExpressions.Rmd | 2 inst/doc/statsExpressions.html | 51 +++++------ inst/doc/stats_details.Rmd | 4 man/contingency_table.Rd | 2 man/corr_test.Rd | 2 man/examples/examples-one-sample-test.R | 3 man/examples/examples-two-sample-test-between.R | 3 man/meta_analysis.Rd | 2 man/one_sample_test.Rd | 5 - man/oneway_anova.Rd | 10 +- man/pairwise_comparisons.Rd | 4 man/rmd-fragments/return.Rmd | 2 man/rmd-fragments/statsExpressions-package.Rmd | 4 man/statsExpressions-package.Rd | 6 - man/tidy_model_expressions.Rd | 14 +++ man/two_sample_test.Rd | 5 - vignettes/statsExpressions.Rmd | 2 vignettes/stats_details.Rmd | 4 28 files changed, 202 insertions(+), 145 deletions(-)
More information about statsExpressions at CRAN
Permanent link
Title: Fast 'JSON', 'NDJSON' and 'GeoJSON' Parser and Generator
Description: A fast 'JSON' parser, generator and validator which converts 'JSON',
'NDJSON' (Newline Delimited 'JSON') and 'GeoJSON' (Geographic 'JSON') data
to/from R objects. The standard R data types are
supported (e.g. logical, numeric, integer) with configurable handling of NULL
and NA values. Data frames, atomic vectors and lists are all supported as data
containers translated to/from 'JSON'. 'GeoJSON' data is read in as
'simple features' objects.
This implementation wraps the 'yyjson' 'C' library which
is available from <https://github.com/ibireme/yyjson>.
Author: Mike Cheng [aut, cre, cph],
Yao Yuan [aut, cph] ,
Murat Tasan [ctb]
Maintainer: Mike Cheng <mikefc@coolbutuseless.com>
Diff between yyjsonr versions 0.1.21 dated 2025-06-02 and 0.1.22 dated 2026-04-05
DESCRIPTION | 8 LICENSE | 2 MD5 | 78 NAMESPACE | 1 NEWS.md | 24 R/geojson.R | 28 R/json-opts.R | 113 build/vignette.rds |binary inst/doc/from_json_options.html | 23 man/opts_read_json.Rd | 15 man/opts_write_json.Rd | 4 man/read_geojson_conn.Rd |only man/read_json_conn.Rd | 1 man/read_json_file.Rd | 1 man/read_json_raw.Rd | 1 man/read_json_str.Rd | 1 man/read_ndjson_file.Rd | 1 man/read_ndjson_raw.Rd | 1 man/read_ndjson_str.Rd | 1 man/yyjson_read_flag.Rd | 65 src/R-yyjson-parse.c | 214 src/R-yyjson-parse.h | 25 src/R-yyjson-serialize.c | 73 src/R-yyjson-serialize.h | 3 src/R-yyjson-state.c |only src/R-yyjson-state.h |only src/geojson-parse.c | 421 + src/ndjson-parse.c | 224 src/utils.h |only src/yyjson.c | 6967 +++++++++++++-------------- src/yyjson.h | 290 - tests/testthat/geojson-ids |only tests/testthat/test-array-empty.R |only tests/testthat/test-array-to-matrix.R |only tests/testthat/test-dataframe-nested.R |only tests/testthat/test-env.R |only tests/testthat/test-geojson-ids.R |only tests/testthat/test-geojson-read-write.R | 17 tests/testthat/test-json5.R |only tests/testthat/test-ndjson.R | 49 tests/testthat/test-null-serialize.R |only tests/testthat/test-object-empty.R |only tests/testthat/test-testbot-error-handling.R |only tests/testthat/test-valgrind-poke.R |only 44 files changed, 4831 insertions(+), 3820 deletions(-)
Title: Topological Connectivity Analysis for Numeric Data
Description: Topological data analysis methods based on graph-theoretic
approaches for discovering topological structures in data. Constructs
topological spaces from graphs following Nada et al. (2018)
<doi:10.1002/mma.4726>, with visibility graph construction for time
series following Lacasa et al. (2008) <doi:10.1073/pnas.0709247105>.
Supports directed visibility graphs for bitopological analysis of
temporal irreversibility (Kelly, 1963), and Alexandrov topology
construction from reachability preorders.
Author: Jose Mauricio Gomez Julian [aut, cre]
Maintainer: Jose Mauricio Gomez Julian <isadore.nabi@pm.me>
Diff between topologyR versions 0.1.2 dated 2026-01-22 and 0.2.0 dated 2026-04-05
topologyR-0.1.2/topologyR/R/utils.R |only topologyR-0.1.2/topologyR/inst/manuals/manual_de_usuario.html |only topologyR-0.1.2/topologyR/inst/manuals/manual_de_usuario.pdf |only topologyR-0.1.2/topologyR/inst/manuals/user_manual.html |only topologyR-0.1.2/topologyR/inst/manuals/user_manual.pdf |only topologyR-0.2.0/topologyR/DESCRIPTION | 24 topologyR-0.2.0/topologyR/MD5 | 58 topologyR-0.2.0/topologyR/NAMESPACE | 9 topologyR-0.2.0/topologyR/R/RcppExports.R |only topologyR-0.2.0/topologyR/R/directed_topology.R |only topologyR-0.2.0/topologyR/R/globals.R | 17 topologyR-0.2.0/topologyR/R/topologyR-package.R |only topologyR-0.2.0/topologyR/R/topology_functions.R | 1008 ++++------ topologyR-0.2.0/topologyR/R/topology_generation.R |only topologyR-0.2.0/topologyR/R/visibility_graph.R |only topologyR-0.2.0/topologyR/build |only topologyR-0.2.0/topologyR/inst/manuals/user_manual.Rmd |only topologyR-0.2.0/topologyR/man/analyze_topology_factors.Rd | 58 topologyR-0.2.0/topologyR/man/bitopology_invariants.Rd |only topologyR-0.2.0/topologyR/man/calculate_thresholds.Rd | 27 topologyR-0.2.0/topologyR/man/calculate_topology.Rd | 10 topologyR-0.2.0/topologyR/man/complete_topology.Rd | 37 topologyR-0.2.0/topologyR/man/generate_alexandrov_topology.Rd |only topologyR-0.2.0/topologyR/man/generate_bitopology.Rd |only topologyR-0.2.0/topologyR/man/generate_topology.Rd |only topologyR-0.2.0/topologyR/man/horizontal_visibility_graph.Rd |only topologyR-0.2.0/topologyR/man/is_topology_connected.Rd | 33 topologyR-0.2.0/topologyR/man/is_topology_connected2.Rd | 17 topologyR-0.2.0/topologyR/man/is_topology_connected_exact.Rd |only topologyR-0.2.0/topologyR/man/is_topology_connected_manual.Rd | 19 topologyR-0.2.0/topologyR/man/natural_visibility_graph.Rd |only topologyR-0.2.0/topologyR/man/simplest_topology.Rd | 36 topologyR-0.2.0/topologyR/man/topologyR-package.Rd |only topologyR-0.2.0/topologyR/man/visualize_topology_thresholds.Rd | 33 topologyR-0.2.0/topologyR/src |only topologyR-0.2.0/topologyR/tests |only 36 files changed, 647 insertions(+), 739 deletions(-)
Title: Code Analysis and Project Context for R
Description: Parses R source files into Abstract Syntax Tree (AST) symbol indices, traces function
callers across projects, discovers project dependency graphs, generates
project briefings, and provides package introspection tools. Designed
for AI coding agents that need structured code understanding.
Author: Troy Hernandez [aut, cre]
Maintainer: Troy Hernandez <troy@cornball.ai>
Diff between saber versions 0.2.0 dated 2026-03-30 and 0.3.0 dated 2026-04-05
saber-0.2.0/saber/inst/scripts/analyze_sessions.R |only saber-0.3.0/saber/DESCRIPTION | 8 - saber-0.3.0/saber/MD5 | 16 +-- saber-0.3.0/saber/R/briefing.R | 29 +++-- saber-0.3.0/saber/R/symbols.R | 2 saber-0.3.0/saber/README.md | 98 +++++++++++++++++-- saber-0.3.0/saber/inst/scripts/session-start.R | 78 ++++++++++++++- saber-0.3.0/saber/inst/tinytest/test_briefing.R | 48 ++++++--- saber-0.3.0/saber/inst/tinytest/test_session_start.R |only saber-0.3.0/saber/man/briefing.Rd | 19 ++- 10 files changed, 245 insertions(+), 53 deletions(-)
Title: Multiple Granger Causality Tests for Time Series and Panel Data
Description: Comprehensive suite of Granger causality tests for time series
and panel data. For time series: Toda-Yamamoto (1995)
<doi:10.1016/0304-4076(94)01616-8>, Fourier-based tests with single
frequency (Enders and Jones, 2016) <doi:10.1515/snde-2014-0101> and
cumulative frequencies (Nazlioglu et al., 2019)
<doi:10.1080/1540496X.2018.1434072>, quantile causality tests (Cai et al.,
2023) <doi:10.1016/j.frl.2023.104327>, and Bootstrap Fourier Granger
Causality in Quantiles (Cheng et al., 2021)
<doi:10.1007/s12076-020-00263-0>. For panel data: Panel Fourier
Toda-Yamamoto (Yilanci and Gorus, 2020)
<doi:10.1007/s11356-020-10092-9> and Panel Quantile Causality tests
(Wang and Nguyen, 2022) <doi:10.1080/1331677X.2021.1952089>, as well as
Group-Mean and Pooled Fully Modified OLS estimators for panel
cointegrating polynomial regressions (Wagner and Reichold, 2023)
<doi:10.1080/07474938.2023.2178141>. All tests include bootstrap
inference for robust p-valu [...truncated...]
Author: Muhammad Alkhalaf [aut, cre, cph]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between caustests versions 1.0.2 dated 2026-03-12 and 1.1.1 dated 2026-04-05
DESCRIPTION | 46 +++++----- MD5 | 25 ++++- NAMESPACE | 8 + R/caustests-package.R | 49 +++++++++-- R/xtpcaus.R |only R/xtpcmg.R |only README.md | 128 ++++++++++++++--------------- build/partial.rdb |binary man/caustests-package.Rd | 206 +++++++++++++++++++++++++++-------------------- man/grunfeld_cmg.Rd |only man/grunfeld_panel.Rd |only man/print.xtpcaus.Rd |only man/print.xtpcmg.Rd |only man/summary.xtpcaus.Rd |only man/summary.xtpcmg.Rd |only man/xtpcaus.Rd |only man/xtpcmg.Rd |only tests |only 18 files changed, 277 insertions(+), 185 deletions(-)
Title: Computes Adaptable Radial Axes Mappings
Description: Computes low-dimensional point representations of high-dimensional numerical data according to the data visualization method Adaptable Radial Axes described in: Manuel Rubio-Sánchez, Alberto Sanchez, and Dirk J. Lehmann (2017) "Adaptable radial axes plots for improved multivariate data visualization" <doi:10.1111/cgf.13196>.
Author: Manuel Rubio-Sanchez [aut, cre, cph] ,
Dirk J. Lehmann [ctb] ,
Miguel Angel Munoz Mohedano [ctb] ,
Alberto Sanchez Campos [ctb] ,
Cristina Soguero-Ruiz [ctb]
Maintainer: Manuel Rubio-Sanchez <manuel.rubio@urjc.es>
This is a re-admission after prior archival of version 0.1.3 dated 2026-01-29
Diff between aramappings versions 0.1.3 dated 2026-01-29 and 0.2.0 dated 2026-04-05
DESCRIPTION | 10 MD5 | 69 +++--- NEWS.md | 12 + R/ara_exact_l1.R | 129 ----------- R/ara_exact_l2.R | 11 R/ara_exact_linf.R | 126 ----------- R/ara_ordered_l1.R | 85 ------- R/ara_ordered_l2.R | 11 R/ara_ordered_linf.R | 94 -------- R/ara_unconstrained_l1.R | 130 ----------- R/ara_unconstrained_l2.R | 12 - R/ara_unconstrained_linf.R | 124 ----------- R/utils.R | 220 ------------------- README.md | 2 build/vignette.rds |binary inst/doc/intro_to_aramappings.R | 6 inst/doc/intro_to_aramappings.Rmd | 8 inst/doc/intro_to_aramappings.html | 40 +-- man/ara_exact_l1.Rd | 18 - man/ara_exact_linf.Rd | 18 - man/ara_ordered_l1.Rd | 2 man/ara_ordered_l2.Rd | 2 man/ara_ordered_linf.Rd | 2 man/ara_unconstrained_l1.Rd | 12 - man/ara_unconstrained_linf.Rd | 12 - tests/testthat/_problems |only tests/testthat/test-ara_exact_l1.R | 182 ---------------- tests/testthat/test-ara_exact_linf.R | 182 ---------------- tests/testthat/test-ara_ordered_l1.R | 44 --- tests/testthat/test-ara_ordered_linf.R | 44 --- tests/testthat/test-ara_unconstrained_l1.R | 299 -------------------------- tests/testthat/test-ara_unconstrained_linf.R | 300 --------------------------- vignettes/intro_to_aramappings.Rmd | 8 33 files changed, 185 insertions(+), 2029 deletions(-)
Title: Latent Variable Models
Description: A general implementation of Structural Equation Models
with latent variables (MLE, 2SLS, and composite likelihood
estimators) with both continuous, censored, and ordinal
outcomes (Holst and Budtz-Joergensen (2013) <doi:10.1007/s00180-012-0344-y>).
Mixture latent variable models and non-linear latent variable models
(Holst and Budtz-Joergensen (2020) <doi:10.1093/biostatistics/kxy082>).
The package also provides methods for graph exploration (d-separation,
back-door criterion), simulation of general non-linear latent variable
models, and estimation of influence functions for a broad range of
statistical models.
Author: Klaus K. Holst [aut, cre],
Brice Ozenne [ctb],
Thomas Gerds [ctb]
Maintainer: Klaus K. Holst <klaus@holst.it>
Diff between lava versions 1.8.2 dated 2025-10-30 and 1.9.0 dated 2026-04-05
lava-1.8.2/lava/R/index.sem.R |only lava-1.8.2/lava/R/zgetmplus.R |only lava-1.8.2/lava/R/zgetsas.R |only lava-1.8.2/lava/man/IC.Rd |only lava-1.8.2/lava/man/figures/gof1-1.png |only lava-1.8.2/lava/man/figures/logohex.png |only lava-1.8.2/lava/man/figures/lvm1-1.png |only lava-1.8.2/lava/man/figures/mediation1-1.png |only lava-1.8.2/lava/man/figures/nlin1-1.png |only lava-1.8.2/lava/man/figures/simres1-1.png |only lava-1.8.2/lava/man/getMplus.Rd |only lava-1.8.2/lava/tests/testthat/test-plot.R |only lava-1.8.2/lava/vignettes/figs |only lava-1.9.0/lava/DESCRIPTION | 16 lava-1.9.0/lava/INDEX | 7 lava-1.9.0/lava/MD5 | 232 +- lava-1.9.0/lava/NAMESPACE | 50 lava-1.9.0/lava/NEWS.md | 61 lava-1.9.0/lava/R/Col.R | 16 lava-1.9.0/lava/R/Grep.R | 4 lava-1.9.0/lava/R/IC.R | 180 - lava-1.9.0/lava/R/Inverse.R | 7 lava-1.9.0/lava/R/Objective.R | 316 --- lava-1.9.0/lava/R/addattr.R | 4 lava-1.9.0/lava/R/addhook.R | 3 lava-1.9.0/lava/R/blockdiag.R | 6 lava-1.9.0/lava/R/compare.R | 15 lava-1.9.0/lava/R/confband.R | 41 lava-1.9.0/lava/R/confint.R | 13 lava-1.9.0/lava/R/covariance.R | 1 lava-1.9.0/lava/R/devcoords.R | 50 lava-1.9.0/lava/R/diagtest.R | 2 lava-1.9.0/lava/R/dsep.R | 4 lava-1.9.0/lava/R/estimate.default.R | 151 - lava-1.9.0/lava/R/estimate.lvm.R | 3 lava-1.9.0/lava/R/estimate_calculus.R |only lava-1.9.0/lava/R/fix.R | 17 lava-1.9.0/lava/R/getsas.R |only lava-1.9.0/lava/R/glmest.R | 5 lava-1.9.0/lava/R/img.R | 4 lava-1.9.0/lava/R/index-method.R |only lava-1.9.0/lava/R/lava-package.R | 40 lava-1.9.0/lava/R/measurement.error.R | 14 lava-1.9.0/lava/R/merge.R | 165 - lava-1.9.0/lava/R/multipletesting.R | 26 lava-1.9.0/lava/R/napass0.R | 16 lava-1.9.0/lava/R/normal.R | 2 lava-1.9.0/lava/R/optims.R | 4 lava-1.9.0/lava/R/plot.estimate.R | 58 lava-1.9.0/lava/R/plot.sim.R | 30 lava-1.9.0/lava/R/plotConf.R | 31 lava-1.9.0/lava/R/regression.R | 8 lava-1.9.0/lava/R/sim.default.R | 120 + lava-1.9.0/lava/R/startvalues.R | 291 -- lava-1.9.0/lava/R/utils.R | 49 lava-1.9.0/lava/README.md | 307 +- lava-1.9.0/lava/build/partial.rdb |binary lava-1.9.0/lava/build/vignette.rds |binary lava-1.9.0/lava/inst/doc/correlation.R | 17 lava-1.9.0/lava/inst/doc/correlation.Rmd | 75 lava-1.9.0/lava/inst/doc/correlation.html | 505 ++-- lava-1.9.0/lava/inst/doc/influencefunction.R | 142 + lava-1.9.0/lava/inst/doc/influencefunction.Rmd | 314 ++- lava-1.9.0/lava/inst/doc/influencefunction.html | 1639 +++++++++------- lava-1.9.0/lava/inst/doc/nonlinear.R | 70 lava-1.9.0/lava/inst/doc/nonlinear.Rmd | 106 - lava-1.9.0/lava/inst/doc/nonlinear.html | 332 +-- lava-1.9.0/lava/inst/misc |only lava-1.9.0/lava/man/Col.Rd | 16 lava-1.9.0/lava/man/IC.default.Rd |only lava-1.9.0/lava/man/Inverse.Rd |only lava-1.9.0/lava/man/Missing.Rd | 2 lava-1.9.0/lava/man/blockdiag.Rd | 6 lava-1.9.0/lava/man/closed_testing.Rd | 39 lava-1.9.0/lava/man/covariance.Rd | 4 lava-1.9.0/lava/man/deprdiag.Rd | 4 lava-1.9.0/lava/man/devcoords.Rd | 18 lava-1.9.0/lava/man/diagtest.Rd | 4 lava-1.9.0/lava/man/dsep.lvm.Rd | 6 lava-1.9.0/lava/man/estimate.default.Rd | 67 lava-1.9.0/lava/man/eventTime.Rd | 7 lava-1.9.0/lava/man/figures/closedtesting.pdf |only lava-1.9.0/lava/man/figures/closedtesting.svg |only lava-1.9.0/lava/man/figures/closedtesting.tex |only lava-1.9.0/lava/man/figures/estimate-contrast-1.svg |only lava-1.9.0/lava/man/figures/gof1-1.svg |only lava-1.9.0/lava/man/figures/logo.png |only lava-1.9.0/lava/man/figures/lvm1-1.svg |only lava-1.9.0/lava/man/figures/mediation1-1.svg |only lava-1.9.0/lava/man/figures/nlin1-1.svg |only lava-1.9.0/lava/man/figures/simres1-1.svg |only lava-1.9.0/lava/man/getSAS.Rd | 5 lava-1.9.0/lava/man/index-lvm.Rd |only lava-1.9.0/lava/man/index-method.Rd |only lava-1.9.0/lava/man/intercept.Rd | 4 lava-1.9.0/lava/man/internal.Rd | 25 lava-1.9.0/lava/man/intervention.lvm.Rd | 2 lava-1.9.0/lava/man/lava-package.Rd | 11 lava-1.9.0/lava/man/lava.options.Rd | 8 lava-1.9.0/lava/man/measurement.error.Rd | 5 lava-1.9.0/lava/man/missingdata.Rd | 10 lava-1.9.0/lava/man/na.pass0.Rd |only lava-1.9.0/lava/man/plot.estimate.Rd | 7 lava-1.9.0/lava/man/plot.sim.Rd | 2 lava-1.9.0/lava/man/plotConf.Rd | 12 lava-1.9.0/lava/man/regression-set.Rd | 9 lava-1.9.0/lava/man/serotonin.Rd | 28 lava-1.9.0/lava/man/sim.default.Rd | 20 lava-1.9.0/lava/man/summary.sim.Rd | 6 lava-1.9.0/lava/man/twindata.Rd | 14 lava-1.9.0/lava/tests/testthat/_snaps |only lava-1.9.0/lava/tests/testthat/test-complik.R |only lava-1.9.0/lava/tests/testthat/test-constrain.R | 8 lava-1.9.0/lava/tests/testthat/test-estimate-calculus.R |only lava-1.9.0/lava/tests/testthat/test-estimate-lvm.R |only lava-1.9.0/lava/tests/testthat/test-estimate_default.R | 275 ++ lava-1.9.0/lava/tests/testthat/test-graphics.R |only lava-1.9.0/lava/tests/testthat/test-inference.R | 94 lava-1.9.0/lava/tests/testthat/test-influence.R | 50 lava-1.9.0/lava/tests/testthat/test-merge-estimate.R |only lava-1.9.0/lava/tests/testthat/test-misc.R | 84 lava-1.9.0/lava/tests/testthat/test-model.R | 22 lava-1.9.0/lava/tests/testthat/test-multigroup.R | 29 lava-1.9.0/lava/tests/testthat/test-nonlinear.R |only lava-1.9.0/lava/tests/testthat/test-optim.R |only lava-1.9.0/lava/tests/testthat/test-sim.R | 4 lava-1.9.0/lava/tests/testthat/test-simdef.R | 39 lava-1.9.0/lava/vignettes/correlation.Rmd | 75 lava-1.9.0/lava/vignettes/data/nonlinear_em0.rds |binary lava-1.9.0/lava/vignettes/data/nonlinear_fitcv.rds |binary lava-1.9.0/lava/vignettes/data/nonlinear_selmod.rds |binary lava-1.9.0/lava/vignettes/influencefunction.Rmd | 314 ++- lava-1.9.0/lava/vignettes/nonlinear.Rmd | 106 - lava-1.9.0/lava/vignettes/ref.bib | 8 134 files changed, 4101 insertions(+), 2917 deletions(-)
Title: High Dimensional Data Visualization
Description: It provides materials (i.e. 'serial axes' objects, Andrew's plot, various glyphs for scatter plot) to visualize high dimensional data.
Author: Zehao Xu [aut, cre],
R. Wayne Oldford [aut],
Teun van den Brand [ctb]
Maintainer: Zehao Xu <z267xu@gmail.com>
Diff between ggmulti versions 1.0.8 dated 2025-10-08 and 1.0.9 dated 2026-04-05
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/collide-.R | 7 ++++--- R/compute-scales.R | 1 + inst/doc/glyph.html | 4 ++-- inst/doc/highDim.html | 6 +++--- inst/doc/histogram-density-.html | 16 ++++++++-------- 7 files changed, 27 insertions(+), 25 deletions(-)
Title: Utilities for Fude Polygon
Description: Provides utilities to facilitate handling of Fude Polygon data
downloadable from the Ministry of Agriculture, Forestry and Fisheries
website <https://open.fude.maff.go.jp>.
Author: Takeshi Nishimura [aut, cph, cre]
Maintainer: Takeshi Nishimura <takenishi@gmail.com>
Diff between fude versions 0.4.0 dated 2026-03-01 and 0.4.1 dated 2026-04-05
fude-0.4.0/fude/man/figures/README-gogoshimafgb-1.png |only fude-0.4.0/fude/man/figures/README-nosplit_gogoshima-1.png |only fude-0.4.1/fude/DESCRIPTION | 13 fude-0.4.1/fude/MD5 | 57 - fude-0.4.1/fude/NAMESPACE | 1 fude-0.4.1/fude/NEWS.md | 6 fude-0.4.1/fude/R/bind_fude.R | 91 +- fude-0.4.1/fude/R/cite_fude.R | 127 ++-- fude-0.4.1/fude/R/combine_fude.R | 121 ++- fude-0.4.1/fude/R/extract_boundary.R | 304 ++++------ fude-0.4.1/fude/R/extract_fude.R | 95 +-- fude-0.4.1/fude/R/get_boundary.R | 235 ++++--- fude-0.4.1/fude/R/ls_fude.R | 45 - fude-0.4.1/fude/R/read_fude.R | 311 ++++++---- fude-0.4.1/fude/R/read_ikasudb.R | 106 ++- fude-0.4.1/fude/R/rename_fude.R | 65 +- fude-0.4.1/fude/R/shiny_fude.R | 395 ++++++------- fude-0.4.1/fude/README.md | 248 ++------ fude-0.4.1/fude/man/bind_fude.Rd | 15 fude-0.4.1/fude/man/cite_fude.Rd | 10 fude-0.4.1/fude/man/combine_fude.Rd | 33 - fude-0.4.1/fude/man/extract_boundary.Rd | 29 fude-0.4.1/fude/man/extract_fude.Rd | 28 fude-0.4.1/fude/man/figures/README-gogoshima-1.png |binary fude-0.4.1/fude/man/figures/README-ikasu-1.png |only fude-0.4.1/fude/man/get_boundary.Rd | 41 - fude-0.4.1/fude/man/ls_fude.Rd | 14 fude-0.4.1/fude/man/read_fude.Rd | 38 - fude-0.4.1/fude/man/read_ikasudb.Rd | 18 fude-0.4.1/fude/man/rename_fude.Rd | 34 - fude-0.4.1/fude/man/shiny_fude.Rd | 18 31 files changed, 1340 insertions(+), 1158 deletions(-)