Title: Estimation of Transition Probabilities in Multistate Models
Description: Estimation of transition probabilities for the
illness-death model and or the three-state progressive model.
Author: Artur Araujo [aut, cre] ,
Luis Meira-Machado [aut] ,
Javier Roca-Pardinas [aut]
Maintainer: Artur Araujo <artur.stat@gmail.com>
Diff between TPmsm versions 1.2.14 dated 2025-09-15 and 1.2.15 dated 2026-04-06
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 24 ++++++++++++------------ inst/NEWS.Rd | 6 ++++++ inst/doc/TPmsm.pdf |binary man/TPmsm-package.Rd | 4 ++-- src/init.c | 1 - 9 files changed, 32 insertions(+), 27 deletions(-)
Title: Mixed-Effect Models, with or without Spatial Random Effects
Description: Inference based on models with or without spatially-correlated random effects, multivariate responses, or non-Gaussian random effects (e.g., Beta). Variation in residual variance (heteroscedasticity) can itself be represented by a mixed-effect model. Both classical geostatistical models (Rousset and Ferdy 2014 <doi:10.1111/ecog.00566>), and Markov random field models on irregular grids (as considered in the 'INLA' package, <https://www.r-inla.org>), can be fitted, with distinct computational procedures exploiting the sparse matrix representations for the latter case and other autoregressive models. Laplace approximations are used for likelihood or restricted likelihood. Penalized quasi-likelihood and other variants discussed in the h-likelihood literature (Lee and Nelder 2001 <doi:10.1093/biomet/88.4.987>) are also implemented.
Author: Francois Rousset [aut, cre, cph] ,
Jean-Baptiste Ferdy [aut, cph],
Alexandre Courtiol [aut]
Maintainer: Francois Rousset <francois.rousset@umontpellier.fr>
Diff between spaMM versions 4.6.1 dated 2025-06-27 and 4.6.65 dated 2026-04-06
spaMM-4.6.1/spaMM/tests/testthat/test_init_NaN.R |only spaMM-4.6.1/spaMM/tests/testthat/test_outer.R |only spaMM-4.6.65/spaMM/DESCRIPTION | 8 spaMM-4.6.65/spaMM/MD5 | 271 - spaMM-4.6.65/spaMM/NAMESPACE | 18 spaMM-4.6.65/spaMM/R/Beta.R | 3 spaMM-4.6.65/spaMM/R/COMPoisson.R | 4 spaMM-4.6.65/spaMM/R/CanonizeRanPars.R | 18 spaMM-4.6.65/spaMM/R/HLCor.R | 2 spaMM-4.6.65/spaMM/R/HLFactorList.R | 49 spaMM-4.6.65/spaMM/R/HLfit.R | 10 spaMM-4.6.65/spaMM/R/HLfit_Internals.R | 157 - spaMM-4.6.65/spaMM/R/HLfit_body.R | 22 spaMM-4.6.65/spaMM/R/HLfit_body_NOT_loopenv.R | 10 spaMM-4.6.65/spaMM/R/HLfit_body_augZXy.R | 12 spaMM-4.6.65/spaMM/R/HLfit_loop.R | 8 spaMM-4.6.65/spaMM/R/HLframes.R | 106 spaMM-4.6.65/spaMM/R/IRLS_internals.R | 16 spaMM-4.6.65/spaMM/R/LMLTslots.R | 14 spaMM-4.6.65/spaMM/R/LR.R | 65 spaMM-4.6.65/spaMM/R/LevM_internals.R | 4 spaMM-4.6.65/spaMM/R/LevM_v_h.R | 116 spaMM-4.6.65/spaMM/R/LevM_v_h_spprec.R | 108 spaMM-4.6.65/spaMM/R/MakeCovEst.R | 2 spaMM-4.6.65/spaMM/R/ZAL_class.R | 26 spaMM-4.6.65/spaMM/R/augZXy_obj.R | 2 spaMM-4.6.65/spaMM/R/calc_LRT.R | 9 spaMM-4.6.65/spaMM/R/combinepar.R | 6 spaMM-4.6.65/spaMM/R/confint.R | 14 spaMM-4.6.65/spaMM/R/corrFamilies.R | 12 spaMM-4.6.65/spaMM/R/corrHLfit-internals.R | 54 spaMM-4.6.65/spaMM/R/corrHLfit_body.R | 2 spaMM-4.6.65/spaMM/R/cov_new_fix.R | 85 spaMM-4.6.65/spaMM/R/determine_spprec.R | 210 - spaMM-4.6.65/spaMM/R/extractors.R | 129 spaMM-4.6.65/spaMM/R/fit_as_ZX.R | 1429 +++++----- spaMM-4.6.65/spaMM/R/fit_as_sparsePrecision.R | 143 - spaMM-4.6.65/spaMM/R/fitme.R | 6 spaMM-4.6.65/spaMM/R/fitme_body.R | 25 spaMM-4.6.65/spaMM/R/fitme_fitmv_internals.R | 42 spaMM-4.6.65/spaMM/R/fitmecorrHLfit_body_internals.R | 86 spaMM-4.6.65/spaMM/R/fitmv.R |only spaMM-4.6.65/spaMM/R/fitmv_body.R | 28 spaMM-4.6.65/spaMM/R/fitmv_internals.R | 6 spaMM-4.6.65/spaMM/R/geo_info.R | 226 - spaMM-4.6.65/spaMM/R/glm.reformat.R | 2 spaMM-4.6.65/spaMM/R/goftest.R | 38 spaMM-4.6.65/spaMM/R/hatvalues.R | 8 spaMM-4.6.65/spaMM/R/locoptim.R | 100 spaMM-4.6.65/spaMM/R/makeLowerUpper.R | 27 spaMM-4.6.65/spaMM/R/mapMM.R | 6 spaMM-4.6.65/spaMM/R/multiFRK.R | 71 spaMM-4.6.65/spaMM/R/newPLS.R | 96 spaMM-4.6.65/spaMM/R/numInfo.R | 324 +- spaMM-4.6.65/spaMM/R/plot.HLfit.R | 33 spaMM-4.6.65/spaMM/R/plot_effects.R | 31 spaMM-4.6.65/spaMM/R/pois4mlogit.R | 883 +++++- spaMM-4.6.65/spaMM/R/postfit_internals.R | 13 spaMM-4.6.65/spaMM/R/predict.R | 193 - spaMM-4.6.65/spaMM/R/predict_mv.R | 18 spaMM-4.6.65/spaMM/R/preprocess.R | 111 spaMM-4.6.65/spaMM/R/preprocess_MV.R | 413 +- spaMM-4.6.65/spaMM/R/preprocess_internals.R | 881 +++--- spaMM-4.6.65/spaMM/R/profile.R | 45 spaMM-4.6.65/spaMM/R/sXaug_EigenDense_QRP_Chol_scaled.R | 13 spaMM-4.6.65/spaMM/R/sXaug_Matrix_CHM_Hess.R | 10 spaMM-4.6.65/spaMM/R/sXaug_sparsePrecisions.R | 8 spaMM-4.6.65/spaMM/R/safe_opt.R | 67 spaMM-4.6.65/spaMM/R/save.R | 2 spaMM-4.6.65/spaMM/R/separator.R | 8 spaMM-4.6.65/spaMM/R/simulate.HL.R | 57 spaMM-4.6.65/spaMM/R/spaMM.data.R | 45 spaMM-4.6.65/spaMM/R/summary.HL.R | 24 spaMM-4.6.65/spaMM/R/transffit.R |only spaMM-4.6.65/spaMM/R/update.HL.R | 66 spaMM-4.6.65/spaMM/R/utils.R | 62 spaMM-4.6.65/spaMM/build/partial.rdb |binary spaMM-4.6.65/spaMM/inst/CITATION | 3 spaMM-4.6.65/spaMM/inst/NEWS.Rd | 62 spaMM-4.6.65/spaMM/man/AIC.Rd | 5 spaMM-4.6.65/spaMM/man/HLCor.Rd | 19 spaMM-4.6.65/spaMM/man/HLfit.Rd | 33 spaMM-4.6.65/spaMM/man/LRT.Rd |only spaMM-4.6.65/spaMM/man/PAIRfn.Rd | 2 spaMM-4.6.65/spaMM/man/ZAXlist.Rd | 6 spaMM-4.6.65/spaMM/man/algebra.Rd | 24 spaMM-4.6.65/spaMM/man/aliases.Rd | 6 spaMM-4.6.65/spaMM/man/anova.HLfit.Rd | 113 spaMM-4.6.65/spaMM/man/control.HLfit.Rd | 2 spaMM-4.6.65/spaMM/man/corrMatrix.Rd | 120 spaMM-4.6.65/spaMM/man/diallel_fixed.Rd | 1 spaMM-4.6.65/spaMM/man/extractors.Rd | 2 spaMM-4.6.65/spaMM/man/fitme.Rd | 32 spaMM-4.6.65/spaMM/man/fitmv.Rd | 45 spaMM-4.6.65/spaMM/man/fixed.Rd | 2 spaMM-4.6.65/spaMM/man/genX2X.Rd |only spaMM-4.6.65/spaMM/man/gof.Rd | 14 spaMM-4.6.65/spaMM/man/hatvalues.HLfit.Rd | 4 spaMM-4.6.65/spaMM/man/inverse.Gamma.Rd | 4 spaMM-4.6.65/spaMM/man/mapMM.Rd | 4 spaMM-4.6.65/spaMM/man/mv.Rd | 11 spaMM-4.6.65/spaMM/man/numInfo.Rd | 34 spaMM-4.6.65/spaMM/man/optimBounds.Rd |only spaMM-4.6.65/spaMM/man/options.Rd | 5 spaMM-4.6.65/spaMM/man/plot.HL.Rd | 52 spaMM-4.6.65/spaMM/man/plot_effect.Rd | 7 spaMM-4.6.65/spaMM/man/pois4mlogit.Rd | 108 spaMM-4.6.65/spaMM/man/predict.Rd | 25 spaMM-4.6.65/spaMM/man/random-effects.Rd | 42 spaMM-4.6.65/spaMM/man/resid.model.Rd | 9 spaMM-4.6.65/spaMM/man/residuals.HLfit.Rd | 43 spaMM-4.6.65/spaMM/man/setNbThreads.Rd | 2 spaMM-4.6.65/spaMM/man/spaMM-internal.Rd | 2 spaMM-4.6.65/spaMM/man/spaMM.Rd | 4 spaMM-4.6.65/spaMM/man/transffit.Rd |only spaMM-4.6.65/spaMM/src/internals.cpp | 5 spaMM-4.6.65/spaMM/tests/test-all.R | 6 spaMM-4.6.65/spaMM/tests/testthat/extralong/test-composite-extra.R | 117 spaMM-4.6.65/spaMM/tests/testthat/extralong/test-mv-extra.R | 42 spaMM-4.6.65/spaMM/tests/testthat/test-AR1.R | 4 spaMM-4.6.65/spaMM/tests/testthat/test-LLM.R | 4 spaMM-4.6.65/spaMM/tests/testthat/test-LRT-boot.R | 3 spaMM-4.6.65/spaMM/tests/testthat/test-Rasch.R | 1 spaMM-4.6.65/spaMM/tests/testthat/test-aaa-first.R |only spaMM-4.6.65/spaMM/tests/testthat/test-adjacency-corrMatrix.R | 17 spaMM-4.6.65/spaMM/tests/testthat/test-adjacency-long.R | 2 spaMM-4.6.65/spaMM/tests/testthat/test-augZXy.R | 8 spaMM-4.6.65/spaMM/tests/testthat/test-composite.R | 3 spaMM-4.6.65/spaMM/tests/testthat/test-confint.R | 12 spaMM-4.6.65/spaMM/tests/testthat/test-corrFamily-doc-examples.R | 2 spaMM-4.6.65/spaMM/tests/testthat/test-dhglm.R | 5 spaMM-4.6.65/spaMM/tests/testthat/test-fixedLRT.R | 4 spaMM-4.6.65/spaMM/tests/testthat/test-init-NaN.R |only spaMM-4.6.65/spaMM/tests/testthat/test-inverse.Gamma.R | 7 spaMM-4.6.65/spaMM/tests/testthat/test-numInfo.R | 4 spaMM-4.6.65/spaMM/tests/testthat/test-obsInfo.R | 2 spaMM-4.6.65/spaMM/tests/testthat/test-outer.R |only spaMM-4.6.65/spaMM/tests/testthat/test-pois4mlogit.R | 96 spaMM-4.6.65/spaMM/tests/testthat/test-poly.R | 23 spaMM-4.6.65/spaMM/tests/testthat/test-predVar-Matern-corrMatrix.R | 2 spaMM-4.6.65/spaMM/tests/testthat/test-ranCoefs.R | 2 spaMM-4.6.65/spaMM/tests/testthat/test-rank.R | 10 142 files changed, 5206 insertions(+), 3240 deletions(-)
Title: Many Ways to Measure and Classify Membership for Networks,
Nodes, and Ties
Description: Many tools for calculating network, node, or tie
marks, measures, motifs and memberships of many different types of networks.
Marks identify structural positions, measures quantify network properties,
memberships classify nodes into groups, and motifs tabulate substructure participation.
All functions operate with all classes of network data covered in 'manynet',
and on directed, undirected, multiplex, multimodal, signed, and other networks.
Author: James Hollway [cre, aut, ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between netrics versions 0.2.0 dated 2026-03-26 and 0.2.1 dated 2026-04-06
DESCRIPTION | 8 +- MD5 | 132 ++++++++++++++++++---------------- NEWS.md | 10 ++ R/member_community.R | 65 +++++++++------- inst |only man/mark_core.Rd | 2 man/mark_degree.Rd | 2 man/mark_diff.Rd | 2 man/mark_dyads.Rd | 2 man/mark_nodes.Rd | 2 man/mark_select_node.Rd | 2 man/mark_select_tie.Rd | 2 man/mark_ties.Rd | 2 man/mark_triangles.Rd | 2 man/measure_assort_net.Rd | 2 man/measure_assort_node.Rd | 2 man/measure_breadth.Rd | 2 man/measure_broker_node.Rd | 2 man/measure_broker_tie.Rd | 2 man/measure_brokerage.Rd | 2 man/measure_central_between.Rd | 4 - man/measure_central_close.Rd | 4 - man/measure_central_degree.Rd | 4 - man/measure_central_eigen.Rd | 4 - man/measure_centralisation_between.Rd | 4 - man/measure_centralisation_close.Rd | 4 - man/measure_centralisation_degree.Rd | 4 - man/measure_centralisation_eigen.Rd | 4 - man/measure_centralities_between.Rd | 4 - man/measure_centralities_close.Rd | 4 - man/measure_centralities_degree.Rd | 4 - man/measure_centralities_eigen.Rd | 4 - man/measure_closure.Rd | 2 man/measure_closure_node.Rd | 2 man/measure_cohesion.Rd | 2 man/measure_core.Rd | 2 man/measure_diffusion_node.Rd | 2 man/measure_diverse_net.Rd | 2 man/measure_diverse_node.Rd | 2 man/measure_features.Rd | 2 man/measure_fragmentation.Rd | 2 man/measure_hierarchy.Rd | 2 man/measure_periods.Rd | 2 man/member_brokerage.Rd | 2 man/member_cliques.Rd | 2 man/member_community.Rd | 2 man/member_community_hier.Rd | 2 man/member_community_non.Rd | 21 ++++- man/member_components.Rd | 2 man/member_core.Rd | 2 man/member_diffusion.Rd | 2 man/member_equivalence.Rd | 2 man/method_cluster.Rd | 2 man/method_kselect.Rd | 2 man/motif_brokerage_net.Rd | 2 man/motif_brokerage_node.Rd | 2 man/motif_exposure.Rd | 2 man/motif_hazard.Rd | 2 man/motif_hierarchy.Rd | 2 man/motif_net.Rd | 2 man/motif_node.Rd | 2 man/motif_path.Rd | 2 man/motif_periods.Rd | 2 63 files changed, 207 insertions(+), 167 deletions(-)
Title: Port of the 'Scilab' 'n1qn1' Module for Unconstrained BFGS
Optimization
Description: Provides 'Scilab' 'n1qn1'. This takes more memory than traditional L-BFGS. The n1qn1 routine is useful since it allows prespecification of a Hessian.
If the Hessian is near enough the truth in optimization it can speed up the optimization problem. The algorithm is described in the
'Scilab' optimization documentation located at
<https://www.scilab.org/sites/default/files/optimization_in_scilab.pdf>. This version uses manually modified code from 'f2c' to make this a C only binary.
Author: Matthew Fidler [aut, cre],
Wenping Wang [aut],
Claude Lemarechal [aut, ctb],
Joseph Bonnans [ctb],
Bill Denney [ctb] ,
Jean-Charles Gilbert [ctb],
Claudia Sagastizabal [ctb],
Stephen L. Campbell, [ctb],
Jean-Philippe Chancelier [ctb],
Ramine Nikoukha [...truncated...]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between n1qn1 versions 6.0.1-13 dated 2026-04-02 and 6.0.1-14 dated 2026-04-06
n1qn1-6.0.1-13/n1qn1/tests/testthat/test-memory-safety.R |only n1qn1-6.0.1-14/n1qn1/DESCRIPTION | 6 +- n1qn1-6.0.1-14/n1qn1/MD5 | 13 ++-- n1qn1-6.0.1-14/n1qn1/NEWS.md | 26 +++++++++ n1qn1-6.0.1-14/n1qn1/R/n1qn1.R | 4 - n1qn1-6.0.1-14/n1qn1/src/RcppExpMod.cpp | 43 ++++++++------- n1qn1-6.0.1-14/n1qn1/src/evaluate.h | 1 n1qn1-6.0.1-14/n1qn1/tests/testthat/test-coverage.R |only n1qn1-6.0.1-14/n1qn1/tests/testthat/test-edge-cases.R |only 9 files changed, 62 insertions(+), 31 deletions(-)
Title: 'ggplot2' Based Plots with Statistical Details
Description: Extension of 'ggplot2', 'ggstatsplot' creates graphics with
details from statistical tests included in the plots themselves. It
provides an easier syntax to generate information-rich plots for
statistical analysis of continuous (violin plots, scatterplots,
histograms, dot plots, dot-and-whisker plots) or categorical (pie and
bar charts) data. Currently, it supports the most common types of
statistical approaches and tests: parametric, nonparametric, robust,
and Bayesian versions of t-test/ANOVA, correlation analyses,
contingency table analysis, meta-analysis, and regression analyses.
References: Patil (2021) <doi:10.21105/joss.03236>.
Author: Indrajeet Patil [cre, aut, cph]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between ggstatsplot versions 0.13.5 dated 2026-02-06 and 0.13.6 dated 2026-04-06
DESCRIPTION | 14 MD5 | 248 - NEWS.md | 14 R/extract-stats.R | 23 R/ggbarstats.R | 8 R/ggbetweenstats-helpers.R | 19 R/ggbetweenstats.R | 8 R/ggcoefstats.R | 28 R/ggcorrmat.R | 8 R/ggdotplotstats.R | 2 R/gghistostats.R | 2 R/ggpiestats-ggbarstats-helpers.R | 4 R/ggpiestats.R | 19 R/ggscatterstats.R | 2 R/ggstatsplot-package.R | 2 R/ggwithinstats.R | 2 README.md | 84 build/partial.rdb |binary build/vignette.rds |binary inst/doc/additional.Rmd | 30 inst/doc/additional.html | 30 inst/doc/ggstatsplot.Rmd | 2 inst/doc/ggstatsplot.html | 55 man/extract_stats.Rd | 2 man/ggbarstats.Rd | 8 man/ggbetweenstats.Rd | 8 man/ggcoefstats.Rd | 22 man/ggcorrmat.Rd | 8 man/ggdotplotstats.Rd | 2 man/gghistostats.Rd | 2 man/ggpiestats.Rd | 17 man/ggscatterstats.Rd | 2 man/ggstatsplot-package.Rd | 4 man/ggwithinstats.Rd | 2 man/grouped_ggbarstats.Rd | 2 man/grouped_ggcorrmat.Rd | 2 man/grouped_ggdotplotstats.Rd | 2 man/grouped_gghistostats.Rd | 2 man/grouped_ggpiestats.Rd | 2 man/grouped_ggscatterstats.Rd | 2 tests/testthat.R | 6 tests/testthat/_snaps/ggbarstats/checking-paired-two-way-table-with-na.svg | 154 - 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Title: 'GGML' Tensor Operations for Machine Learning
Description: Provides 'R' bindings to the 'GGML' tensor library for machine
learning, designed primarily for 'Vulkan' GPU acceleration with full CPU
fallback. Requires 'Vulkan' 1.2+ with legacy pipeline barriers (avoids
'Synchronization2' due to 'RADV' performance issues); supports 'Push
Descriptors' ('VK_KHR_push_descriptor')
to eliminate descriptor pool overhead when available. 'Vulkan' support is
auto-detected at build time on Linux (when 'libvulkan-dev' and 'glslc'
are installed) and on Windows (when 'Vulkan' 'SDK' is installed and
'VULKAN_SDK' environment variable is set); all operations fall back to
CPU transparently when no GPU is available.
Supports tensors up to 5D natively (GGML_MAX_DIMS=5).
Implements tensor operations, neural network layers, 'quantization', and a
'Keras'-like sequential model API for building and training networks.
Includes 'AdamW' (Adam with Weight decay) and 'SGD' (Stochastic Gradient
Descent) optimizers with 'MSE' (Mean Squared Error) and cross-entropy
losses. Also p [...truncated...]
Author: Yuri Baramykov [aut, cre],
Georgi Gerganov [ctb, cph] ,
Jeffrey Quesnelle [ctb, cph] ,
Bowen Peng [ctb, cph] ,
Mozilla Foundation [ctb, cph]
Maintainer: Yuri Baramykov <lbsbmsu@mail.ru>
Diff between ggmlR versions 0.6.7 dated 2026-03-29 and 0.7.0 dated 2026-04-06
DESCRIPTION | 27 ++++-- MD5 | 91 ++++++++++++++++------ NAMESPACE | 7 + NEWS.md | 44 ++++++++++ R/gguf.R |only R/nn_model.R | 2 README.md | 46 ++++++++++- build |only configure | 10 ++ configure.win | 10 ++ inst/WORDLIST | 37 ++++++++ inst/doc |only inst/examples/api_server.R |only inst/examples/api_stress_test.R |only inst/examples/benchmark_onnx.R | 7 + inst/examples/stress_test_gpu.R |only inst/examples/titanic_classification.R | 7 - inst/include/ggml-common.h | 4 inst/include/ggml.h | 68 +++++++++++++++- inst/include/r_ggml_compat.h | 3 man/ggmlR-package.Rd | 2 man/gguf_free.Rd |only man/gguf_load.Rd |only man/gguf_metadata.Rd |only man/gguf_tensor_data.Rd |only man/gguf_tensor_info.Rd |only man/gguf_tensor_names.Rd |only src/Makevars.in | 3 src/Makevars.win.in | 3 src/ggml-vulkan/ggml-vulkan.cpp | 66 +++++++++++++-- src/onnx/onnx_ggml.c | 68 +++++++--------- src/r_interface.c | 18 ++++ src/r_interface_gguf.c |only tests/testthat/Rplots.pdf |only tests/testthat/test-autograd-missing.R |only tests/testthat/test-chain-sequential-batchnorm.R | 4 tests/testthat/test-gguf.R |only tests/testthat/test-graph-utils.R |only tests/testthat/test-headers-sync.R |only tests/testthat/test-inplace-ops.R |only tests/testthat/test-keras-api.R |only tests/testthat/test-misc-ops.R |only tests/testthat/test-model-ops.R |only tests/testthat/test-nn-functional-missing.R |only tests/testthat/test-onnx-chain-broadcast-strict.R | 11 +- tests/testthat/test-onnx-chain-resize-broadcast.R | 5 - tests/testthat/test-print-methods.R |only tests/testthat/test-quants-missing.R |only tests/testthat/test-tensor-utils.R |only tests/testthat/test-threading.R |only vignettes |only 51 files changed, 443 insertions(+), 100 deletions(-)
Title: Constrained Inference for Linear Mixed Effects Models
Description: Estimation and inference for linear models where some or all of the
fixed-effects coefficients are subject to order restrictions. This package uses
the robust residual bootstrap methodology for inference, and can handle some
structure in the residual variance matrix.
Author: Casey M. Jelsema [aut, cre],
Shyamal D. Peddada [aut]
Maintainer: Casey M. Jelsema <jelsema.casey@gmail.com>
Diff between CLME versions 2.0-12 dated 2020-06-07 and 2.0-13 dated 2026-04-06
CLME-2.0-12/CLME/data/rat.blood.csv |only CLME-2.0-13/CLME/DESCRIPTION | 13 CLME-2.0-13/CLME/MD5 | 56 CLME-2.0-13/CLME/NAMESPACE | 159 - CLME-2.0-13/CLME/NEWS | 196 +- CLME-2.0-13/CLME/R/00Package.r | 20 CLME-2.0-13/CLME/R/clme.em.fixed.r | 326 +-- CLME-2.0-13/CLME/R/clme.em.mixed.r | 438 ++-- CLME-2.0-13/CLME/R/clme.em.r | 221 +- CLME-2.0-13/CLME/R/clme.r | 793 ++++---- CLME-2.0-13/CLME/R/clme_resids.r | 332 +-- CLME-2.0-13/CLME/R/create.constraints.r | 339 +-- CLME-2.0-13/CLME/R/minque.r | 314 +-- CLME-2.0-13/CLME/R/plot.clme.r | 464 ++-- CLME-2.0-13/CLME/R/resid_boot.r | 388 ++-- CLME-2.0-13/CLME/R/shiny_clme.r | 1445 +++++++-------- CLME-2.0-13/CLME/R/summary_clme.r | 786 ++++---- CLME-2.0-13/CLME/R/test.stat.r | 304 +-- CLME-2.0-13/CLME/R/utilities.r | 10 CLME-2.0-13/CLME/data/rat.blood.csv.gz |only CLME-2.0-13/CLME/inst/CITATION | 14 CLME-2.0-13/CLME/man/clme.Rd | 7 CLME-2.0-13/CLME/man/clme_em.Rd | 3 CLME-2.0-13/CLME/man/create.constraints.Rd | 13 CLME-2.0-13/CLME/man/fibroid.Rd | 2 CLME-2.0-13/CLME/man/print.varcorr_clme.Rd | 4 CLME-2.0-13/CLME/man/rat.blood.Rd | 2 CLME-2.0-13/CLME/man/shiny_clme.Rd | 2 CLME-2.0-13/CLME/tests/testthat/00_test.r | 158 - CLME-2.0-13/CLME/tests/testthat/01_name_random_effects.r | 72 30 files changed, 3446 insertions(+), 3435 deletions(-)