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Title: Maxwell Control Charts
Description: Computes Control limits, coefficients of control limits, various performance metrics and depicts control charts for monitoring Maxwell-distributed quality characteristics.
Author: Zahid Khan [aut],
Zsolt T. Kosztyan [aut, cre]
Maintainer: Zsolt T. Kosztyan <kosztyan.zsolt@gtk.uni-pannon.hu>
Diff between mxcc versions 0.0.4 dated 2025-08-19 and 0.0.5 dated 2026-04-10
DESCRIPTION | 8 ++++---- MD5 | 18 ++++++++++-------- NAMESPACE | 8 +++++--- R/mxewma.R |only R/plot.R | 8 ++------ R/print.R | 30 ++++++++++++++++-------------- R/summary.R | 6 +----- man/mxewma.Rd |only man/plot.Rd | 28 ++++++++++++++++------------ man/print.Rd | 14 ++++++-------- man/summary.Rd | 26 +++++++++++++++----------- 11 files changed, 75 insertions(+), 71 deletions(-)
More information about observationalBlocks at CRAN
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Title: Multi-Omic Differentially Expressed Gene-Gene Pairs
Description: Performs multi-omic differential network
analysis by revealing differential interactions between molecular entities
(genes, proteins, transcription factors, or other biomolecules) across the
omic datasets provided.
For each omic dataset, a differential network is constructed where
links represent statistically significant differential interactions between
entities. These networks are then integrated into a comprehensive visualization
using distinct colors to distinguish interactions from different omic layers.
This unified display allows interactive exploration of cross-omic
patterns, such as differential interactions present at both transcript and
protein levels. For each link, users can access differential statistical
significance metrics (p values or adjusted p values, calculated via robust or
traditional linear regression with interaction term) and differential regression
plots.
The methods implemented in this package are described in Sciacca et al. (2023)
<doi:10.1093/bioinform [...truncated...]
Author: Elisabetta Sciacca [aut, cre, cph] ,
Myles Lewis [ctb]
Maintainer: Elisabetta Sciacca <e.sciacca@qmul.ac.uk>
Diff between multiDEGGs versions 1.2.0 dated 2026-03-24 and 1.2.1 dated 2026-04-10
DESCRIPTION | 6 MD5 | 25 ++-- NEWS.md | 5 R/feature_selection_for_ML.R | 29 ++-- README.md | 23 +++ inst/doc/Feature_Selection.R | 192 ++++++++++++++++++------------- inst/doc/Feature_Selection.Rmd | 50 +++++++- inst/doc/Feature_Selection.html | 76 +++++------- man/multiDEGGs_combined_filter.Rd | 15 +- man/multiDEGGs_filter.Rd | 14 +- tests/testthat/test-core_functions.R | 2 tests/testthat/test-plotting_functions.R | 6 vignettes/Feature_Selection.Rmd | 50 +++++++- vignettes/roc.png |only 14 files changed, 308 insertions(+), 185 deletions(-)
Title: R Markdown format for 'Moodle' XML cloze quizzes
Description: Enables the creation of 'Moodle' quiz questions using literate
programming with R Markdown. This makes it easy to quickly create a quiz that
can be randomly replicated with new datasets, questions, and options for
answers.
Author: Mitchell O'Hara-Wild [aut, cre] ,
Emi Tanaka [aut]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between moodlequiz versions 0.2.0 dated 2025-12-06 and 0.2.1 dated 2026-04-10
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 6 +++++- README.md | 18 +++++++++++++++++- 4 files changed, 29 insertions(+), 9 deletions(-)
Title: Laboratorio di Ricerca Sociale con R
Description: Libreria di dati, scripts e funzioni che accompagna il libro "Ricerca sociale con R. Concetti e funzioni base per la ricerca sociale".
Author: Agnese Vardanega [aut, cre]
Maintainer: Agnese Vardanega <avardanega@unite.it>
Diff between LabRS versions 0.2.0 dated 2026-02-07 and 0.2.1 dated 2026-04-10
DESCRIPTION | 7 ++++--- MD5 | 4 ++-- README.md | 6 ++++++ 3 files changed, 12 insertions(+), 5 deletions(-)
Title: Package of the German Book "Statistik mit R und RStudio" by
Joerg grosse Schlarmann
Description: All datasets and functions used in the german book "Statistik mit R und RStudio" by grosse Schlarmann (2010-2024) <https://www.produnis.de/R/>.
Author: Joerg grosse Schlarmann [aut, cre]
Maintainer: Joerg grosse Schlarmann <schlarmann@produnis.de>
Diff between jgsbook versions 1.0.7 dated 2024-06-24 and 1.0.8 dated 2026-04-10
DESCRIPTION | 17 +++++++++-------- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/functions.R | 42 ++++++++++++++++++++++++------------------ man/compare.lm.Rd | 2 +- 5 files changed, 42 insertions(+), 31 deletions(-)
Title: Build and Compare Statistical Models
Description: Build and compare nested statistical models with sets of equal and different independent variables. An analysis using this package is Marquardt et al. (2021) <https://github.com/p-mq/Percentile_based_averaging>.
Author: Dr J. Peter Amin Marquardt [aut, cre]
Maintainer: Dr J. Peter Amin Marquardt <peter@kmarquardt.de>
This is a re-admission after prior archival of version 0.1.2 dated 2021-08-02
Diff between BlanketStatsments versions 0.1.2 dated 2021-08-02 and 0.1.3 dated 2026-04-10
DESCRIPTION | 20 +++++----- MD5 | 14 +++---- NAMESPACE | 1 R/Blanket_statsments.R | 23 ++++++------ man/dot-build_model_formula.Rd | 58 +++++++++++++++---------------- man/redundancy_analysis.Rd | 2 - tests/testthat.R | 2 - tests/testthat/test-Blanket_statsments.R | 26 ++++++------- 8 files changed, 74 insertions(+), 72 deletions(-)
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Title: Causal Analysis of Observational Time-to-Event Data
Description: Implements target trial emulation methods to apply randomized
clinical trial design and analysis in an observational setting. Using
marginal structural models, it can estimate intention-to-treat and
per-protocol effects in emulated trials using electronic health
records. A description and application of the method can be found in
Danaei et al (2013) <doi:10.1177/0962280211403603>.
Author: Isaac Gravestock [aut, cre] ,
Li Su [aut],
Roonak Rezvani [aut] ,
Julia Moesch [aut],
Medical Research Council [fnd],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Isaac Gravestock <isaac.gravestock@roche.com>
Diff between TrialEmulation versions 0.0.4.9 dated 2026-01-14 and 0.0.4.11 dated 2026-04-10
DESCRIPTION | 6 - MD5 | 16 +-- NEWS.md | 2 R/initiators.R | 2 inst/doc/Getting-Started.html | 188 +++++++++++++++++++++--------------------- inst/doc/new-interface.html | 10 +- man/data_preparation.Rd | 2 man/initiators.Rd | 2 man/trial_msm.Rd | 2 9 files changed, 115 insertions(+), 115 deletions(-)
More information about TrialEmulation at CRAN
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Title: Get Executing Script's Path
Description: Determine the path of the executing script. Compatible
with several popular GUIs: 'Rgui', 'RStudio', 'Positron',
'VSCode', 'Jupyter', 'Emacs', and 'Rscript' (shell). Compatible
with several functions and packages: 'source()',
'sys.source()', 'debugSource()' in 'RStudio',
'compiler::loadcmp()', 'utils::Sweave()', 'box::use()',
'knitr::knit()', 'plumber::plumb()', 'shiny::runApp()',
'package:targets', and 'testthat::source_file()'.
Author: Iris Simmons [aut, cre]
Maintainer: Iris Simmons <ikwsimmo@gmail.com>
Diff between this.path versions 2.7.1 dated 2025-11-07 and 2.8.0 dated 2026-04-10
this.path-2.7.1/this.path/src/promises.h |only this.path-2.8.0/this.path/DESCRIPTION | 8 this.path-2.8.0/this.path/LICENSE | 2 this.path-2.8.0/this.path/MD5 | 271 +-- this.path-2.8.0/this.path/NAMESPACE | 6 this.path-2.8.0/this.path/NEWS | 57 this.path-2.8.0/this.path/R/0.R | 6 this.path-2.8.0/this.path/R/backports.R | 4 this.path-2.8.0/this.path/R/cat.R | 6 this.path-2.8.0/this.path/R/checkpath.R | 4 this.path-2.8.0/this.path/R/defunct.R | 6 this.path-2.8.0/this.path/R/enhances.R | 6 this.path-2.8.0/this.path/R/error.R | 6 this.path-2.8.0/this.path/R/files.R | 6 this.path-2.8.0/this.path/R/ismain.R | 6 this.path-2.8.0/this.path/R/lineno.R | 6 this.path-2.8.0/this.path/R/make_fix_funs.R | 10 this.path-2.8.0/this.path/R/ns-hooks.R | 6 this.path-2.8.0/this.path/R/print.R | 6 this.path-2.8.0/this.path/R/progargs.R | 6 this.path-2.8.0/this.path/R/promises.R | 10 this.path-2.8.0/this.path/R/relpath.R | 6 this.path-2.8.0/this.path/R/rprojroot.R | 6 this.path-2.8.0/this.path/R/setsyspath.R | 24 this.path-2.8.0/this.path/R/shfile.R | 6 this.path-2.8.0/this.path/R/startup.R | 12 this.path-2.8.0/this.path/R/sys.R | 6 this.path-2.8.0/this.path/R/sysputenv.R | 6 this.path-2.8.0/this.path/R/tests.R | 6 this.path-2.8.0/this.path/R/thispath.R | 29 this.path-2.8.0/this.path/R/utils.R | 6 this.path-2.8.0/this.path/R/zzz.R | 7 this.path-2.8.0/this.path/README.md | 19 this.path-2.8.0/this.path/build/stage23.rdb |binary this.path-2.8.0/this.path/build/this.path.pdf |binary this.path-2.8.0/this.path/configure | 6 this.path-2.8.0/this.path/configure.win | 6 this.path-2.8.0/this.path/inst/NEWS.in.Rd | 49 this.path-2.8.0/this.path/inst/doc/NEWS.0 | 3 this.path-2.8.0/this.path/inst/extdata/README | 4 this.path-2.8.0/this.path/inst/extdata/main.R | 97 - 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this.path-2.8.0/this.path/src/rgui_path.c | 6 this.path-2.8.0/this.path/src/rprojroot.c | 6 this.path-2.8.0/this.path/src/rversiondefines.h | 6 this.path-2.8.0/this.path/src/setsyspath.c | 187 +- this.path-2.8.0/this.path/src/shfile.c | 6 this.path-2.8.0/this.path/src/startup.c | 71 this.path-2.8.0/this.path/src/symbols.h | 7 this.path-2.8.0/this.path/src/sys.c | 6 this.path-2.8.0/this.path/src/sys.h | 6 this.path-2.8.0/this.path/src/this.path.h | 6 this.path-2.8.0/this.path/src/thispath.c | 740 ++++------ this.path-2.8.0/this.path/src/thispathdefn.c | 688 ++++++++- this.path-2.8.0/this.path/src/thispathdefn.h | 234 ++- this.path-2.8.0/this.path/src/translations.h | 6 this.path-2.8.0/this.path/src/utils.c | 6 this.path-2.8.0/this.path/tests/basename2-tests.R | 6 this.path-2.8.0/this.path/tests/ext-tests.R | 14 this.path-2.8.0/this.path/tests/faster-subsequent-times.R | 6 this.path-2.8.0/this.path/tests/isclipboard-tests.R | 6 this.path-2.8.0/this.path/tests/package-box-supp/startsWith-NULL.R | 6 this.path-2.8.0/this.path/tests/package-box-supp/startsWith-env-path.R | 6 this.path-2.8.0/this.path/tests/package-box-supp/startsWith-src-path.R | 6 this.path-2.8.0/this.path/tests/package-box-supp/startsWith-sys-path.R | 6 this.path-2.8.0/this.path/tests/package-box-tests.R | 6 this.path-2.8.0/this.path/tests/pathjoin-tests.R | 6 this.path-2.8.0/this.path/tests/set-sys-path-tests.R | 6 this.path-2.8.0/this.path/tests/this-path-tests.R | 44 this.path-2.8.0/this.path/tests/zzz.R | 6 this.path-2.8.0/this.path/tools/configure.R | 45 this.path-2.8.0/this.path/tools/info.dcf | 2 this.path-2.8.0/this.path/tools/this_path_reg_ptrs.c | 8 137 files changed, 2538 insertions(+), 1180 deletions(-)
Title: Bayesian Mixtures with an Unknown Number of Components
Description: Fits Bayesian finite mixtures with an unknown number of components using the telescoping sampler and different component distributions. For more details see Frühwirth-Schnatter et al. (2021) <doi:10.1214/21-BA1294>, Malsiner-Walli et al. (in press) <doi:10.1007/s11634-025-00640-x> and Malsiner-Walli et al. (2026) <doi:10.48550/arXiv.2603.00277>.
Author: Gertraud Malsiner-Walli [aut, cre] ,
Bettina Gruen [aut] ,
Sylvia Fruehwirth-Schnatter [aut]
Maintainer: Gertraud Malsiner-Walli <Gertraud.Malsiner-Walli@wu.ac.at>
Diff between telescope versions 0.2-1 dated 2025-08-18 and 0.2-2 dated 2026-04-10
DESCRIPTION | 10 MD5 | 86 ++- R/SimData.R | 2 R/identifyLCAMixture.R | 7 R/identifyMixture.R | 7 R/plotBubble.R | 2 R/plotScatter.R | 2 R/priorOnK_spec.R | 2 R/prior_alpha_e0.R | 15 R/sampleK.R | 4 R/sampleLCA.R | 4 R/sampleLCAMixture.R | 4 R/sampleMultNormMixture.R | 4 R/samplePoisMixture.R | 4 R/sampleUniNormMixture.R | 12 R/sample_e0_alpha.R | 4 build/vignette.rds |binary inst/NEWS.Rd | 10 inst/doc/Bayesian_LCA.html | 388 ++++++++--------- inst/doc/Bayesian_LCA_mixtures.Rmd | 6 inst/doc/Bayesian_LCA_mixtures.html | 567 +++++++++++++------------- inst/doc/Bayesian_Poisson_mixtures.html | 364 ++++++++-------- inst/doc/Bayesian_mult_Gaussian_mixtures.html | 368 ++++++++-------- inst/doc/Bayesian_univ_Gaussian_mixtures.html | 366 ++++++++-------- inst/doc/CliPS_diabetes.R |only inst/doc/CliPS_diabetes.Rmd |only inst/doc/CliPS_diabetes.html |only man/SimData.Rd | 2 man/identifyLCAMixture.Rd | 4 man/identifyMixture.Rd | 4 man/plotBubble.Rd | 2 man/plotScatter.Rd | 2 man/priorOnAlpha_spec.Rd | 11 man/priorOnE0_spec.Rd | 2 man/priorOnK_spec.Rd | 2 man/sampleAlpha.Rd | 4 man/sampleK_alpha.Rd | 2 man/sampleK_e0.Rd | 2 man/sampleLCA.Rd | 4 man/sampleLCAMixture.Rd | 4 man/sampleMultNormMixture.Rd | 4 man/samplePoisMixture.Rd | 4 man/sampleUniNormMixture.Rd | 10 vignettes/Bayesian_LCA_mixtures.Rmd | 6 vignettes/CliPS_diabetes.Rmd |only vignettes/telescope.bib | 23 - 46 files changed, 1186 insertions(+), 1144 deletions(-)
Title: Transformed Additive Gaussian Processes
Description: Implement the transformed additive Gaussian (TAG) process and the transformed approximately additive Gaussian (TAAG) process proposed in Lin and Joseph (2020) <DOI:10.1080/00401706.2019.1665592>. These functions can be used to model deterministic computer experiments, obtain predictions at new inputs, and quantify the uncertainty of the predictions. This research is supported by a U.S. National Science Foundation grant DMS-1712642 and a U.S. Army Research Office grant W911NF-17-1-0007.
Author: Li-Hsiang Lin [aut, cre],
V. Roshan Joseph [aut]
Maintainer: Li-Hsiang Lin <lhlin@gsu.edu>
This is a re-admission after prior archival of version 0.5.1 dated 2021-06-07
Diff between TAG versions 0.5.1 dated 2021-06-07 and 0.7.1 dated 2026-04-10
DESCRIPTION | 14 +++++++++----- MD5 | 16 +++++++++------- R/TAG.R | 14 +++++++++++--- R/pred_TAAG.R | 13 +++++++++---- man/TAG.Rd | 2 +- src/Makevars | 1 - src/Makevars.win | 1 - src/RcppExports.cpp | 5 +++++ tests |only 9 files changed, 44 insertions(+), 22 deletions(-)
Title: Interface to the SCIP Optimization Suite
Description: Provides an R interface to SCIP (Solving Constraint Integer Programs), a framework for mixed-integer
programming (MIP), mixed-integer nonlinear programming (MINLP), and constraint integer programming
(2025, <doi:10.48550/arXiv.2511.18580>). Supports linear, quadratic, SOS, indicator, and knapsack
constraints with continuous, binary, and integer variables. Includes a one-shot solver interface
and a model-building API for incremental problem construction.
Author: Balasubramanian Narasimhan [aut, cre] ,
SCIP Optimization Suite Authors [cph]
Maintainer: Balasubramanian Narasimhan <naras@stanford.edu>
Diff between scip versions 1.10.0-2 dated 2026-04-03 and 1.10.0-3 dated 2026-04-10
DESCRIPTION | 8 MD5 | 138 +++++----- NEWS.md | 11 README.md | 14 - configure | 53 +++- configure.win | 44 +++ inst/CITATION | 2 inst/build_scip.sh | 14 - inst/scip/CMakeLists.txt | 6 inst/scip/Makefile | 27 +- inst/scip/cmake/Modules/FindASan.cmake | 2 inst/scip/cmake/Modules/FindMSan.cmake | 2 inst/scip/cmake/Modules/FindTSan.cmake | 2 inst/scip/cmake/Modules/FindUBSan.cmake | 9 inst/scip/cmake/Modules/sanitize-helpers.cmake | 50 ++- inst/scip/src/dejavu/dejavu.h | 14 - inst/scip/src/dejavu/ds.h | 5 inst/scip/src/dejavu/groups.h | 222 +++++++++++++++-- inst/scip/src/dejavu/ir.h | 14 + inst/scip/src/dejavu/preprocess.h | 52 ++-- inst/scip/src/dejavu/refinement.h | 18 + inst/scip/src/dejavu/utility.h | 2 inst/scip/src/scip/cons_nonlinear.c | 13 - inst/scip/src/scip/cons_superindicator.h | 28 +- inst/scip/src/scip/githash.c | 2 inst/scip/src/scip/heur_dks.c | 43 ++- inst/scip/src/scip/nlhdlr.c | 3 inst/scip/src/scip/nlpi_conopt.c | 5 inst/scip/src/scip/paramset.c | 15 - inst/scip/src/scip/presol_inttobinary.c | 4 inst/scip/src/scip/pub_iisfinder.h | 15 + inst/scip/src/scip/scip_iisfinder.h | 21 + inst/scip/src/scip/scip_solve.c | 63 +--- inst/scip/src/scip/scip_solvingstats.c | 28 ++ inst/scip/src/scip/scip_var.h | 4 inst/scip/src/scip/stat.c | 1 inst/scip/src/scip/struct_set.h | 3 inst/scip/src/scip/tree.c | 53 +--- inst/scip/src/scip/type_cons.h | 2 inst/scip/src/scip/var.c | 2 inst/scip/src/tinycthread/tinycthread.c | 30 +- inst/scip/src/tinycthread/tinycthread.h | 60 +--- inst/scip/src/tpi/tpi_openmp.c | 7 inst/scip/src/tpi/tpi_tnycthrd.c | 20 - inst/scip/src/tpi/tpi_tnycthrd.h | 8 inst/soplex/CMakeLists.txt | 2 inst/soplex/Makefile | 2 inst/soplex/cmake/Modules/FindASan.cmake | 2 inst/soplex/cmake/Modules/FindMSan.cmake | 2 inst/soplex/cmake/Modules/FindTSan.cmake | 2 inst/soplex/cmake/Modules/FindUBSan.cmake | 9 inst/soplex/cmake/Modules/sanitize-helpers.cmake | 50 ++- inst/soplex/src/soplex.hpp | 7 inst/soplex/src/soplex/basevectors.h | 86 ++---- inst/soplex/src/soplex/clufactor.hpp | 298 +++++++++++++---------- inst/soplex/src/soplex/clufactor_rational.hpp | 42 --- inst/soplex/src/soplex/fmt.hpp | 34 -- inst/soplex/src/soplex/git_hash.cpp | 2 inst/soplex/src/soplex/rational.h | 10 inst/soplex/src/soplex/slufactor.hpp | 18 - inst/soplex/src/soplex/solverational.hpp | 22 + inst/soplex/src/soplex/spxdefines.h | 20 + inst/soplex/src/soplex/spxsolve.hpp | 13 - inst/soplex/src/soplex/spxsolver.h | 22 - inst/soplex/src/soplex/spxsolver.hpp | 24 + inst/soplex/src/soplex/ssvectorbase.h | 58 ++-- inst/soplex/src/soplex/usertimer.cpp | 12 inst/soplex/src/soplex/wallclocktimer.cpp | 27 -- inst/soplex/src/soplexmain.cpp | 9 src/Makevars.in | 4 70 files changed, 1169 insertions(+), 747 deletions(-)
Title: Fast Generation of von Mises-Fisher Distributed Pseudo-Random
Vectors
Description: Generates pseudo-random vectors that follow an arbitrary von Mises-Fisher distribution on a sphere. This method is fast and efficient when generating a large number of pseudo-random vectors. Functions to generate random variates and compute density for the distribution of an inner product between von Mises-Fisher random vector and its mean direction are also provided. Details are in Kang and Oh (2024) <doi:10.1007/s11222-024-10419-3>.
Author: Seungwoo Kang [aut, cre] ,
Hee-Seok Oh [aut]
Maintainer: Seungwoo Kang <kangsw@skku.edu>
Diff between rvMF versions 0.1.1 dated 2026-02-15 and 0.1.2 dated 2026-04-10
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS.md | 4 ++++ man/rvMF-package.Rd | 2 +- 4 files changed, 13 insertions(+), 9 deletions(-)
Title: Fast Iterative Filtering (FIF) with Portable FFT Backend
Description: Provides an R interface to a C implementation of Fast Iterative Filtering (FIF)
for decomposing a univariate signal into intrinsic mode functions (IMFs) and a residual.
The package uses Fast Fourier Transform library FFTW, if found. If not, it provides
instructions to install it for your OS. This is recommended, as R's internal fft(), while
avoiding external FFT dependencies, is two orders of magnitude slower. See vignette
'Installing FFTW for RFIF' for RFIF installation instructions.
Author: Chuck Coleman [aut, cre]
Maintainer: Chuck Coleman <cdcoleman113@gmail.com>
Diff between RFIF versions 1.0 dated 2026-03-31 and 1.0.1 dated 2026-04-10
DESCRIPTION | 9 MD5 | 20 NEWS.md | 6 build/vignette.rds |binary configure | 89 inst/doc/install-fftw3l.R |only inst/doc/install-fftw3l.Rmd |only inst/doc/install-fftw3l.html |only src/FFT.c | 525 src/FFT.h | 22 src/Fif.c | 5045 -------- src/Fif.h |24831 ++++++++++++++++++++++++++++++++++++++++++- vignettes/install-fftw3l.Rmd |only 13 files changed, 25685 insertions(+), 4862 deletions(-)
Title: Valid Inference on Multiple Quantile Regressions
Description: The approach is based on the closed testing procedure to control familywise error rate in a strong sense.
The local tests implemented are Wald-type and rank-score.
The method is described in De Santis, et al., (2026), <doi:10.48550/arXiv.2511.07999>.
Author: Angela Andreella [aut, cre],
Anna Vesely [aut],
Riccardo De Santis [aut]
Maintainer: Angela Andreella <angela.andreella@unive.it>
Diff between quasar versions 0.2.0 dated 2026-01-09 and 0.2.1 dated 2026-04-10
quasar-0.2.0/quasar/TODO |only quasar-0.2.1/quasar/DESCRIPTION | 10 +++++----- quasar-0.2.1/quasar/MD5 | 13 ++++++------- quasar-0.2.1/quasar/R/estimateCovariance.R | 2 +- quasar-0.2.1/quasar/R/rankTest.R | 4 ++-- quasar-0.2.1/quasar/R/utils.R | 2 +- quasar-0.2.1/quasar/README.md | 8 +++++--- quasar-0.2.1/quasar/man/rankTest.Rd | 2 +- 8 files changed, 21 insertions(+), 20 deletions(-)
Title: Visualizing Panel Data
Description: Visualizes panel data. It has four main functionalities: (1) it plots the treatment status and missing values in a panel dataset; (2) it visualizes the temporal dynamics of a main variable of interest; (3) it depicts the bivariate relationships between a treatment variable and an outcome variable either by unit or in aggregate; (4) it displays the network structure of multi-way fixed effects as a k-partite graph, identifying connected components, singletons, and duplicate observations. For details, see <doi:10.18637/jss.v107.i07>.
Author: Yiqing Xu [aut, cre] ,
Hongyu Mou [aut],
Licheng Liu [aut]
Maintainer: Yiqing Xu <yiqingxu@stanford.edu>
Diff between panelView versions 1.2.1 dated 2026-03-21 and 1.3.0 dated 2026-04-10
DESCRIPTION | 12 +-- MD5 | 10 +-- NAMESPACE | 5 + R/panelView.R | 141 +++++++++++++++++++++++++++++++++++--------- R/plot-network.R |only man/panelView.Rd | 18 ++++- tests/testthat/test-graph.R |only 7 files changed, 146 insertions(+), 40 deletions(-)
Title: Estimation, Diagnostics and Visualization of Conditional
Marginal Effects
Description: Performs estimation, diagnostics, and visualization of conditional marginal effects and group average treatment effects of a treatment on an outcome across different values of a moderator. Optionally integrates with the 'mlr3extralearners' package for additional machine learning backends compatible with the double machine learning estimators. 'mlr3extralearners' is not on CRAN but can be obtained from <https://github.com/mlr-org/mlr3extralearners>.
Author: Yiqing Xu [aut, cre],
Jens Hainmueller [aut],
Jonathan Mummolo [aut],
Tianzhu Qin [aut],
Jiehan Liu [aut],
Ziyi Liu [aut]
Maintainer: Yiqing Xu <yiqingxu@stanford.edu>
Diff between interflex versions 1.2.8 dated 2025-12-17 and 1.4.0 dated 2026-04-10
interflex-1.2.8/interflex/R/RcppExports.R |only interflex-1.2.8/interflex/R/ttest.R |only interflex-1.2.8/interflex/man/rcpparma_hello_world.Rd |only interflex-1.2.8/interflex/src |only interflex-1.4.0/interflex/DESCRIPTION | 52 interflex-1.4.0/interflex/MD5 | 97 interflex-1.4.0/interflex/NAMESPACE | 20 interflex-1.4.0/interflex/NEWS.md |only interflex-1.4.0/interflex/R/DML.R |only interflex-1.4.0/interflex/R/binning.R | 532 - interflex-1.4.0/interflex/R/estimate_cme_irm.R |only interflex-1.4.0/interflex/R/estimate_cme_plr.R |only interflex-1.4.0/interflex/R/estimate_gte_irm.R |only interflex-1.4.0/interflex/R/estimate_gte_plr.R |only interflex-1.4.0/interflex/R/gam.R | 46 interflex-1.4.0/interflex/R/gate_utils.R |only interflex-1.4.0/interflex/R/grf.R |only interflex-1.4.0/interflex/R/inter_test.R | 434 - interflex-1.4.0/interflex/R/interflex.R | 2679 +++++---- interflex-1.4.0/interflex/R/kernel.R | 4902 ++++++++++-------- interflex-1.4.0/interflex/R/lasso.R |only interflex-1.4.0/interflex/R/lasso_discrete.R |only interflex-1.4.0/interflex/R/linear.R | 4509 ++++++++-------- interflex-1.4.0/interflex/R/plot.R | 2965 ++++++---- interflex-1.4.0/interflex/R/plot_pool.R | 2525 +++++---- interflex-1.4.0/interflex/R/predict.R | 1574 ++--- interflex-1.4.0/interflex/R/print.R |only interflex-1.4.0/interflex/R/raw.R | 348 - interflex-1.4.0/interflex/R/uniform.R |only interflex-1.4.0/interflex/R/utils.R |only interflex-1.4.0/interflex/R/zzz.r | 20 interflex-1.4.0/interflex/data/interflex.RData |binary interflex-1.4.0/interflex/man/app-data.Rd |only interflex-1.4.0/interflex/man/inter_test.Rd | 2 interflex-1.4.0/interflex/man/interflex-internal.Rd | 4 interflex-1.4.0/interflex/man/interflex-package.Rd | 3 interflex-1.4.0/interflex/man/interflex.Rd | 220 interflex-1.4.0/interflex/man/plot.interflex.Rd | 28 interflex-1.4.0/interflex/man/predict.interflex.Rd | 2 interflex-1.4.0/interflex/man/s1.Rd | 1 interflex-1.4.0/interflex/man/s2.Rd | 1 interflex-1.4.0/interflex/man/s3.Rd | 1 interflex-1.4.0/interflex/man/s4.Rd | 1 interflex-1.4.0/interflex/man/s5.Rd | 1 interflex-1.4.0/interflex/man/s6.Rd | 1 interflex-1.4.0/interflex/man/s7.Rd | 1 interflex-1.4.0/interflex/man/s8.Rd | 1 interflex-1.4.0/interflex/man/s9.Rd | 1 interflex-1.4.0/interflex/tests |only 49 files changed, 11641 insertions(+), 9330 deletions(-)
Title: Geographical Ecology and Conservation Knowledge Online
Description: Includes a collection of geographical analysis functions aimed primarily at ecology and conservation science studies, allowing processing of both point and raster data. Now integrates SPECTRE (<https://biodiversityresearch.org/spectre/>), a dataset of global geospatial threat data, developed by the authors.
Author: Vasco V. Branco [cre, aut] ,
Pedro Cardoso [aut] ,
Luis Correia [ctb]
Maintainer: Vasco V. Branco <vasco.branco@helsinki.fi>
Diff between gecko versions 1.0.2 dated 2025-09-02 and 1.0.3 dated 2026-04-10
DESCRIPTION | 8 +++--- MD5 | 28 +++++++++++----------- R/access_fn.R | 37 +++++++++++++++++++++-------- R/aux_fn.R | 11 +++++++- R/outlier_fn.R | 36 ++++++++++++++++------------- R/spatial_fn.R | 37 ++++++++++++++++------------- R/spectrify.R | 4 +-- inst/extdata/spectre.metadata.csv | 47 +++++++++++++++++--------------------- man/create.lat.Rd | 4 +-- man/create.long.Rd | 4 +-- man/outliers.detect.Rd | 8 ++++-- man/outliers.detect.mass.Rd | 5 +++- man/reduce.Rd | 4 +++ man/spectre.area.Rd | 7 ++++- man/spectre.citations.Rd | 3 -- 15 files changed, 141 insertions(+), 102 deletions(-)
Title: Generate Color Mapping Functions
Description: A color mapping is generated according to the break values and corresponding colors.
Other colors are generated by interpolating in a certain color space. The functions were part
of the 'circlize' package <https://CRAN.R-project.org/package=circlize>.
Author: Zuguang Gu [aut, cre]
Maintainer: Zuguang Gu <guzuguang@suat-sz.edu.cn>
Diff between colorRamp2 versions 0.1.0 dated 2022-12-21 and 0.1.1 dated 2026-04-10
DESCRIPTION | 14 +++++++------- MD5 | 8 ++++---- build/vignette.rds |binary inst/doc/colorRamp2.R | 2 +- inst/doc/colorRamp2.html | 42 ++++++++++++++++++++++-------------------- 5 files changed, 34 insertions(+), 32 deletions(-)
Title: Israel Baby Names 1949-2024
Description: Israeli baby names provided by Israel's Central Bureau of Statistics
(CBS/LAMAS). Contains names used for at least 5 children in a given year,
covering sectors "Jewish", "Muslim", "Christian-Arab", and "Druze" from
1949-2024. Legacy 1948 data and archived "Other" sector data are provided
as separate datasets. Primary data source: CBS Release 391/2025
<https://www.cbs.gov.il/he/mediarelease/DocLib/2025/391/11_25_391t1.xlsx>.
Author: Aviezer Lifshitz [aut, cre]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>
Diff between babynamesIL versions 0.2.1 dated 2026-03-05 and 0.2.3 dated 2026-04-10
DESCRIPTION | 6 ++--- MD5 | 16 +++++++-------- NEWS.md | 32 ++++++++++++++++++++++++++++++ R/data.R | 6 ++++- README.md | 2 - data/babynamesIL_totals.rda |binary man/babynamesIL_totals.Rd | 6 ++++- tests/testthat/_snaps/data.md | 44 +++++++++++++++++++++--------------------- tests/testthat/test-data.R | 24 +++++++++++++++------- 9 files changed, 92 insertions(+), 44 deletions(-)
Title: Time Series Analysis with State Space Model
Description: Functions for statistical analysis, modeling and simulation of time
series with state space model, based on the methodology in Kitagawa
(2020, ISBN: 978-0-367-18733-0).
Author: Yoshinori Kawasaki [aut, cre],
Junji Nakano [aut],
Masami Saga [aut],
The Institute of Statistical Mathematics [cph, fnd]
Maintainer: Yoshinori Kawasaki <kawasaki@ism.ac.jp>
Diff between TSSS versions 1.3.4-5 dated 2023-09-29 and 1.3.4-7 dated 2026-04-10
TSSS-1.3.4-5/TSSS/inst/AUTHORS |only TSSS-1.3.4-5/TSSS/inst/doc |only TSSS-1.3.4-5/TSSS/src/TSSS.h |only TSSS-1.3.4-7/TSSS/DESCRIPTION | 23 +++- TSSS-1.3.4-7/TSSS/MD5 | 94 +++++++++---------- TSSS-1.3.4-7/TSSS/NEWS.md | 9 + TSSS-1.3.4-7/TSSS/data/BLSALLFOOD.rda |binary TSSS-1.3.4-7/TSSS/data/HAKUSAN.rda |binary TSSS-1.3.4-7/TSSS/data/Haibara.rda |binary TSSS-1.3.4-7/TSSS/data/MYE1F.rda |binary TSSS-1.3.4-7/TSSS/data/NLmodel.rda |binary TSSS-1.3.4-7/TSSS/data/Nikkei225.rda |binary TSSS-1.3.4-7/TSSS/data/PfilterSample.rda |binary TSSS-1.3.4-7/TSSS/data/Rainfall.rda |binary TSSS-1.3.4-7/TSSS/data/Sunspot.rda |binary TSSS-1.3.4-7/TSSS/data/Temperature.rda |binary TSSS-1.3.4-7/TSSS/data/WHARD.rda |binary TSSS-1.3.4-7/TSSS/inst/COPYRIGHTS |only TSSS-1.3.4-7/TSSS/src/arfitf.f | 2 TSSS-1.3.4-7/TSSS/src/armaf.f | 2 TSSS-1.3.4-7/TSSS/src/armafit2f.f | 2 TSSS-1.3.4-7/TSSS/src/armaftf.f | 2 TSSS-1.3.4-7/TSSS/src/boxcoxf.f | 2 TSSS-1.3.4-7/TSSS/src/comsub.f | 1 TSSS-1.3.4-7/TSSS/src/crscorf.f | 2 TSSS-1.3.4-7/TSSS/src/denstyf.f | 5 - TSSS-1.3.4-7/TSSS/src/fftperf.f | 2 TSSS-1.3.4-7/TSSS/src/init.c | 22 ---- TSSS-1.3.4-7/TSSS/src/klinfof.f | 2 TSSS-1.3.4-7/TSSS/src/lsar1f.f | 2 TSSS-1.3.4-7/TSSS/src/lsar2f.f | 2 TSSS-1.3.4-7/TSSS/src/lsqrf.f | 2 TSSS-1.3.4-7/TSSS/src/marfitf.f | 2 TSSS-1.3.4-7/TSSS/src/marlsqf.f | 2 TSSS-1.3.4-7/TSSS/src/marspcf.f | 2 TSSS-1.3.4-7/TSSS/src/ngsimf.f | 2 TSSS-1.3.4-7/TSSS/src/ngsmthf.f | 2 TSSS-1.3.4-7/TSSS/src/particle_smoother_nonlinearf.f | 15 +-- TSSS-1.3.4-7/TSSS/src/particle_smootherf.f | 8 + TSSS-1.3.4-7/TSSS/src/periodf.f | 2 TSSS-1.3.4-7/TSSS/src/polregf.f | 2 TSSS-1.3.4-7/TSSS/src/regF77.h | 22 ---- TSSS-1.3.4-7/TSSS/src/seasonf.f | 2 TSSS-1.3.4-7/TSSS/src/simssmf.f | 2 TSSS-1.3.4-7/TSSS/src/smoothf.f | 2 TSSS-1.3.4-7/TSSS/src/trendf.f | 2 TSSS-1.3.4-7/TSSS/src/tvarf.f | 2 TSSS-1.3.4-7/TSSS/src/tvspcf.f | 2 TSSS-1.3.4-7/TSSS/src/tvvarf.f | 2 TSSS-1.3.4-7/TSSS/src/unicorf.f | 2 50 files changed, 86 insertions(+), 165 deletions(-)
Title: Time-Dependent ROC Curve and AUC for Censored Survival Data
Description: Estimation of time-dependent ROC curve and area under time dependent ROC curve (AUC) in the presence of censored data, with or without competing risks. Confidence intervals of AUCs and tests for comparing AUCs of two rival markers measured on the same subjects can be computed, using the iid-representation of the AUC estimator. Plot functions for time-dependent ROC curves and AUC curves are provided. Time-dependent Positive Predictive Values (PPV) and Negative Predictive Values (NPV) can also be computed. See Blanche et al. (2013) <doi:10.1002/sim.5958> and references therein for the details of the methods implemented in the package.
Author: Paul Blanche [aut, cre]
Maintainer: Paul Blanche <paulfblanche@gmail.com>
Diff between timeROC versions 0.4 dated 2019-12-18 and 0.4.1 dated 2026-04-10
DESCRIPTION | 16 ++++++++++------ MD5 | 10 +++++----- data/Melano.RData |binary data/Paquid.RData |binary inst/CITATION | 13 +++---------- man/compare.Rd | 2 +- 6 files changed, 19 insertions(+), 22 deletions(-)
Title: Selective Editing via Mixture Models
Description: Detection of outliers and influential errors using a latent variable model.
Author: Ugo Guarnera [aut],
Teresa Buglielli [aut],
Davide Di Cecco [aut, cre]
Maintainer: Davide Di Cecco <dicecco@istat.it>
Diff between SeleMix versions 1.0.3 dated 2025-01-23 and 1.0.4 dated 2026-04-10
SeleMix-1.0.3/SeleMix/inst |only SeleMix-1.0.4/SeleMix/DESCRIPTION | 19 + SeleMix-1.0.4/SeleMix/MD5 | 31 +-- SeleMix-1.0.4/SeleMix/NAMESPACE | 14 - SeleMix-1.0.4/SeleMix/NEWS | 3 SeleMix-1.0.4/SeleMix/R/check.vars.r | 308 +++++++++++++++++++++----------- SeleMix-1.0.4/SeleMix/R/ml.est.R | 11 - SeleMix-1.0.4/SeleMix/R/post.prob.R | 131 +++++++++++-- SeleMix-1.0.4/SeleMix/R/pred.y.r | 294 ++++++++++++++++++------------ SeleMix-1.0.4/SeleMix/R/sel.edit.r | 223 +++++++++++++++-------- SeleMix-1.0.4/SeleMix/R/sel.pairs.r | 216 +++++++++++++++++----- SeleMix-1.0.4/SeleMix/R/sel.plot.R | 227 ++++++++++++++++------- SeleMix-1.0.4/SeleMix/R/tensorizza.R | 69 +++++-- SeleMix-1.0.4/SeleMix/build/partial.rdb |binary SeleMix-1.0.4/SeleMix/man/ml.est.Rd | 7 SeleMix-1.0.4/SeleMix/man/pred.y.Rd | 2 SeleMix-1.0.4/SeleMix/man/sel.edit.Rd | 2 17 files changed, 1060 insertions(+), 497 deletions(-)
Title: SAM: Significance Analysis of Microarrays
Description: Significance Analysis of Microarrays for differential expression analysis, RNAseq data and related problems.
Author: Rob Tibshirani [aut, cre],
Michael J. Seo [aut],
G. Chu [aut],
Balasubramanian Narasimhan [aut],
Jun Li [aut]
Maintainer: Rob Tibshirani <tibs@stanford.edu>
Diff between samr versions 3.0 dated 2018-10-16 and 3.0.1 dated 2026-04-10
DESCRIPTION | 32 +++++++++++++++++++++++++------- MD5 | 10 +++++----- inst/doc/sam.pdf |binary man/SAM.Rd | 2 +- man/samr.Rd | 10 +++++----- man/samr.assess.samplesize.plot.Rd | 2 +- 6 files changed, 37 insertions(+), 19 deletions(-)
Title: Reproducible Reports in Psychology
Description: Helper functions for producing reports in Psychology (Reproducible Research). Provides required formatted strings (APA style) for use in 'Knitr'/'Latex' integration within *.Rnw files.
Author: Ian G Mackenzie [cre, aut],
Carolin Dudschig [aut]
Maintainer: Ian G Mackenzie <ian.mackenzie@uni-tuebingen.de>
This is a re-admission after prior archival of version 3.0.2 dated 2022-09-09
Diff between psychReport versions 3.0.2 dated 2022-09-09 and 4.0.1 dated 2026-04-10
DESCRIPTION | 14 - LICENSE | 4 MD5 | 83 +++---- NAMESPACE | 3 NEWS.md |only R/anova.R | 301 ++++++++++---------------- R/psychReport.R | 1 R/psychReportData.R | 25 +- R/sphericity.R |only R/utils.R | 18 - man/aovDispMeans.Rd | 12 - man/aovDispTable.Rd | 10 man/aovEffectSize.Rd | 16 - man/aovJackknifeAdjustment.Rd | 13 - man/aovRoundDigits.Rd | 11 man/aovSphericityAdjustment.Rd | 20 - man/aovTable.Rd | 20 - man/aovTidyTable.Rd | 9 man/effectsizeValueString.Rd | 13 - man/fValueString.Rd | 7 man/mathString.Rd | 3 man/meanStrAov.Rd | 16 - man/normData.Rd | 3 man/printAovMeans.Rd | 8 man/printTable.Rd | 9 man/requiredPackages.Rd | 2 man/sphericityValueString.Rd | 11 man/statStrAov.Rd | 11 tests/testthat/test-aovDispMeans.R | 8 tests/testthat/test-aovDispTable.R | 14 - tests/testthat/test-aovEffectSize.R | 11 tests/testthat/test-aovJackknifeAdjustment.R | 11 tests/testthat/test-aovRoundDigits.R | 16 - tests/testthat/test-aovSphericityAdjustment.R | 90 ++++++- tests/testthat/test-aovTable.R | 29 +- tests/testthat/test-effectsizeValueString.R | 23 - tests/testthat/test-fValueString.R | 11 tests/testthat/test-meanStrAov.R | 19 - tests/testthat/test-printAovMeans.R | 14 - tests/testthat/test-printTable.R | 6 tests/testthat/test-psychReportData.R |only tests/testthat/test-requiredPackages.R | 5 tests/testthat/test-sphericityValueString.R | 32 +- tests/testthat/test-statStrAov.R | 30 -- 44 files changed, 395 insertions(+), 567 deletions(-)
Title: Analysis of Diffusion and Contagion Processes on Networks
Description: Empirical statistical analysis, visualization and simulation of
diffusion and contagion processes on networks. The package implements algorithms
for calculating network diffusion statistics such as transmission rate, hazard
rates, exposure models, network threshold levels, infectiousness (contagion),
and susceptibility. The package is inspired by work published in Valente,
et al., (2015) <DOI:10.1016/j.socscimed.2015.10.001>; Valente (1995) <ISBN:
9781881303213>, Myers (2000) <DOI:10.1086/303110>, Iyengar and others (2011)
<DOI:10.1287/mksc.1100.0566>, Burt (1987) <DOI:10.1086/228667>; among others.
Author: George Vega Yon [aut, cre] ,
Thomas Valente [aut, cph] ,
Anibal Olivera Morales [aut, ctb] ,
Stephanie Dyal [ctb] ,
Timothy Hayes [ctb]
Maintainer: George Vega Yon <g.vegayon@gmail.com>
This is a re-admission after prior archival of version 1.24.0 dated 2025-12-09
Diff between netdiffuseR versions 1.24.0 dated 2025-12-09 and 1.25.0 dated 2026-04-10
netdiffuseR-1.24.0/netdiffuseR/cleanup |only netdiffuseR-1.24.0/netdiffuseR/configure |only netdiffuseR-1.24.0/netdiffuseR/configure.ac |only netdiffuseR-1.24.0/netdiffuseR/src/Makevars.in |only netdiffuseR-1.25.0/netdiffuseR/DESCRIPTION | 32 ++-- netdiffuseR-1.25.0/netdiffuseR/MD5 | 66 ++++---- netdiffuseR-1.25.0/netdiffuseR/NAMESPACE | 1 netdiffuseR-1.25.0/netdiffuseR/NEWS.md | 22 ++ netdiffuseR-1.25.0/netdiffuseR/R/collapse_timeframes.R |only netdiffuseR-1.25.0/netdiffuseR/R/data.r | 79 ++++++++-- netdiffuseR-1.25.0/netdiffuseR/R/plot_diffnet2.r | 2 netdiffuseR-1.25.0/netdiffuseR/README.md | 40 ++--- netdiffuseR-1.25.0/netdiffuseR/build/partial.rdb |binary netdiffuseR-1.25.0/netdiffuseR/build/vignette.rds |binary netdiffuseR-1.25.0/netdiffuseR/data/epigames.rda |only netdiffuseR-1.25.0/netdiffuseR/data/epigamesDiffNet.rda |only netdiffuseR-1.25.0/netdiffuseR/inst/doc/analyzing-medical-innovation-data.html | 26 +-- netdiffuseR-1.25.0/netdiffuseR/inst/doc/introduction-to-netdiffuser.html | 18 +- netdiffuseR-1.25.0/netdiffuseR/man/brfarmers.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/brfarmersDiffNet.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/collapse_timeframes.Rd |only netdiffuseR-1.25.0/netdiffuseR/man/diffusion-data.Rd | 32 ++-- netdiffuseR-1.25.0/netdiffuseR/man/epigames.Rd |only netdiffuseR-1.25.0/netdiffuseR/man/epigamesDiffNet.Rd |only netdiffuseR-1.25.0/netdiffuseR/man/fakeDynEdgelist.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/fakeEdgelist.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/fakesurvey.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/fakesurveyDyn.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/figures/README-plot_diffnet-1.png |binary netdiffuseR-1.25.0/netdiffuseR/man/figures/README-plot_diffnet2-1.png |binary netdiffuseR-1.25.0/netdiffuseR/man/figures/README-plot_diffnet2-withmap-1.png |binary netdiffuseR-1.25.0/netdiffuseR/man/kfamily.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/kfamilyDiffNet.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/medInnovations.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/medInnovationsDiffNet.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/man/round_to_seq.Rd | 2 netdiffuseR-1.25.0/netdiffuseR/src/Makevars |only netdiffuseR-1.25.0/netdiffuseR/src/Makevars.win | 11 - netdiffuseR-1.25.0/netdiffuseR/src/plot.cpp | 17 +- netdiffuseR-1.25.0/netdiffuseR/tests/testthat/test-collapse_timeframes.R |only 40 files changed, 232 insertions(+), 136 deletions(-)
Title: Nested Cross-Validation with 'glmnet' and 'caret'
Description: Implements nested k*l-fold cross-validation for lasso and elastic-net regularised linear models via the 'glmnet' package and other machine learning models via the 'caret' package <doi:10.1093/bioadv/vbad048>. Cross-validation of 'glmnet' alpha mixing parameter and embedded fast filter functions for feature selection are provided. Described as double cross-validation by Stone (1977) <doi:10.1111/j.2517-6161.1977.tb01603.x>. Also implemented is a method using outer CV to measure unbiased model performance metrics when fitting Bayesian linear and logistic regression shrinkage models using the horseshoe prior over parameters to encourage a sparse model as described by Piironen & Vehtari (2017) <doi:10.1214/17-EJS1337SI>.
Author: Myles Lewis [aut, cre] ,
Athina Spiliopoulou [aut] ,
Cankut Cubuk [ctb] ,
Katriona Goldmann [ctb] ,
Ryan C. Thompson [ctb]
Maintainer: Myles Lewis <myles.lewis@qmul.ac.uk>
This is a re-admission after prior archival of version 0.8.0 dated 2025-03-10
Diff between nestedcv versions 0.8.0 dated 2025-03-10 and 0.8.2 dated 2026-04-10
DESCRIPTION | 18 +++++----- MD5 | 38 ++++++++++----------- NEWS.md | 12 ++++++ R/cv.hsstan.R | 2 + R/filters.R | 7 ++- R/nest_filter_balance.R | 11 ++++-- R/outercv.R | 4 +- R/precision_recall.R | 4 ++ R/repeatcv.R | 8 +++- R/shap.R | 3 + R/stat_filter.R | 3 + build/vignette.rds |binary inst/doc/nestedcv.html | 78 ++++++++++++++++++++++---------------------- inst/doc/nestedcv_shap.html | 22 +++++++++--- man/model.hsstan.Rd | 2 + man/outercv.Rd | 4 +- man/plot.prc.Rd | 2 + man/prc.Rd | 2 + man/pred_nestcv_glmnet.Rd | 3 + man/stat_filter.Rd | 3 + 20 files changed, 141 insertions(+), 85 deletions(-)
Title: Microbial Community Ecology Data Analysis
Description: A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity analysis, beta diversity analysis, differential abundance test, null model analysis, network analysis, machine learning, environmental data analysis and functional analysis.
Author: Chi Liu [aut, cre],
Felipe R. P. Mansoldo [ctb],
Minjie Yao [ctb],
Xiangzhen Li [ctb]
Maintainer: Chi Liu <liuchi0426@126.com>
Diff between microeco versions 2.0.0 dated 2026-01-27 and 2.1.0 dated 2026-04-10
DESCRIPTION | 8 +- MD5 | 50 ++++++++------- NAMESPACE | 1 R/data.R | 42 ++++++++++++- R/microtable.R | 4 - R/trans_abund.R | 26 ++++---- R/trans_alpha.R | 6 - R/trans_beta.R | 2 R/trans_classifier.R | 6 + R/trans_diff.R | 130 +++++++++++++++++++++++++--------------- R/trans_env.R | 124 +++++++++++++++++++++++--------------- R/trans_func.R | 3 R/trans_metab.R |only R/trans_network.R | 157 +++++++++++++++++++++++++++++-------------------- R/trans_nullmodel.R | 10 +-- R/trans_venn.R | 20 +++--- R/utility.R | 18 +++-- data/dataset.RData |binary data/soil_metab.RData |only data/soil_microb.RData |only man/microtable.Rd | 2 man/phylo_tree_16S.Rd | 2 man/soil_metab.Rd |only man/soil_microb.Rd |only man/tidy_taxonomy.Rd | 12 ++- man/trans_diff.Rd | 33 ++++++---- man/trans_env.Rd | 25 ++++--- man/trans_metab.Rd |only man/trans_network.Rd | 32 ++++++++- 29 files changed, 454 insertions(+), 259 deletions(-)
Title: Legends for Maps
Description: Create legends for maps and other graphics. Thematic maps need to
be accompanied by legible legends to be fully comprehensible. This package
offers a wide range of legends useful for cartography, some of which may
also be useful for other types of graphics.
Author: Timothee Giraud [cre, aut]
Maintainer: Timothee Giraud <timothee.giraud@cnrs.fr>
Diff between maplegend versions 0.6.0 dated 2026-04-07 and 0.6.1 dated 2026-04-10
DESCRIPTION | 6 +- MD5 | 8 +-- NEWS.md | 7 +++ R/lg_prop.R | 4 - inst/tinytest/tests.R | 106 ++++++++++++++++++++++++-------------------------- 5 files changed, 68 insertions(+), 63 deletions(-)
Title: Automatic Processing of Terrestrial-Based Technologies Point
Cloud Data for Forestry Purposes
Description: Process automation of point cloud data derived from terrestrial-based technologies such as Terrestrial Laser Scanner (TLS) or Mobile Laser Scanner. 'FORTLS' enables (i) detection of trees and estimation of tree-level attributes (e.g. diameters and heights), (ii) estimation of stand-level variables (e.g. density, basal area, mean and dominant height), (iii) computation of metrics related to important forest attributes estimated in Forest Inventories at stand-level, and (iv) optimization of plot design for combining TLS data and field measured data. Documentation about 'FORTLS' is described in Molina-Valero et al. (2022, <doi:10.1016/j.envsoft.2022.105337>).
Author: Juan Alberto Molina-Valero [aut, cph, cre],
Adela Martinez-Calvo [aut, com],
Juan Gabriel Alvarez-Gonzalez [aut, ths],
Fernando Montes [aut],
Cesar Perez-Cruzado [aut, ths]
Maintainer: Juan Alberto Molina-Valero <jamolinavalero@gmail.com>
This is a re-admission after prior archival of version 1.6.2 dated 2026-01-19
Diff between FORTLS versions 1.6.2 dated 2026-01-19 and 2.0.0 dated 2026-04-10
FORTLS-1.6.2/FORTLS/R/stem.analysis.R |only FORTLS-2.0.0/FORTLS/DESCRIPTION | 8 FORTLS-2.0.0/FORTLS/MD5 | 36 - FORTLS-2.0.0/FORTLS/NAMESPACE | 4 FORTLS-2.0.0/FORTLS/R/auxiliary.functions.R | 26 FORTLS-2.0.0/FORTLS/R/normalize.R | 393 ++++++------- FORTLS-2.0.0/FORTLS/R/straightness.R |only FORTLS-2.0.0/FORTLS/R/tree.detection.multi.scan.R | 320 +++++----- FORTLS-2.0.0/FORTLS/R/tree.detection.several.plots.R | 2 FORTLS-2.0.0/FORTLS/R/tree.detection.single.scan.R | 301 +++++---- FORTLS-2.0.0/FORTLS/build/partial.rdb |binary FORTLS-2.0.0/FORTLS/build/vignette.rds |binary FORTLS-2.0.0/FORTLS/inst/doc/plot_design_optimization.html | 4 FORTLS-2.0.0/FORTLS/inst/doc/tree_level.html | 94 +-- FORTLS-2.0.0/FORTLS/inst/python/geometric_features.py | 150 ++-- FORTLS-2.0.0/FORTLS/man/install_fortls_python_deps.Rd | 32 - FORTLS-2.0.0/FORTLS/man/normalize.Rd | 11 FORTLS-2.0.0/FORTLS/man/tree.detection.multi.scan.Rd | 11 FORTLS-2.0.0/FORTLS/man/tree.detection.several.plots.Rd | 17 FORTLS-2.0.0/FORTLS/man/tree.detection.single.scan.Rd | 15 20 files changed, 755 insertions(+), 669 deletions(-)
Title: Centrality-Based Pathway Enrichment
Description: It aims to find significant pathways through
network topology information. It has several advantages compared
with current pathway enrichment tools. First, pathway node instead
of single gene is taken as the basic unit when analysing networks
to meet the fact that genes must be constructed into complexes to
hold normal functions. Second, multiple network centrality measures are
applied simultaneously to measure importance of nodes from different
aspects to make a full view on the biological system. CePa extends
standard pathway enrichment methods, which include both over-representation
analysis procedure and gene-set analysis procedure.
<doi:10.1093/bioinformatics/btt008>.
Author: Zuguang Gu [aut, cre]
Maintainer: Zuguang Gu <guzuguang@suat-sz.edu.cn>
Diff between CePa versions 0.8.1 dated 2024-10-08 and 0.8.2 dated 2026-04-10
DESCRIPTION | 14 +++++++------- MD5 | 10 +++++----- inst/doc/CePa.pdf |binary inst/doc/analysis-p53.pdf |binary inst/doc/parsing-PID-pathway-data.pdf |binary man/report.Rd | 5 +---- 6 files changed, 13 insertions(+), 16 deletions(-)
Title: Boosted Multivariate Trees for Longitudinal Data
Description: Implements Friedman's gradient descent boosting algorithm for modeling longitudinal response using multivariate tree base learners. Longitudinal response could be continuous, binary, nominal or ordinal. A time-covariate interaction effect is modeled using penalized B-splines (P-splines) with estimated adaptive smoothing parameter. Although the package is design for longitudinal data, it can handle cross-sectional data as well. Implementation details are provided in Pande et al. (2017), Mach Learn <DOI:10.1007/s10994-016-5597-1>.
Author: Hemant Ishwaran [aut],
Amol Pande [aut],
Udaya B. Kogalur [aut, cre]
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
This is a re-admission after prior archival of version 1.5.1 dated 2022-03-10
Diff between boostmtree versions 1.5.1 dated 2022-03-10 and 2.0.0 dated 2026-04-10
boostmtree-1.5.1/boostmtree/R/marginalPlot.R |only boostmtree-1.5.1/boostmtree/R/partialPlot.R |only boostmtree-1.5.1/boostmtree/R/vimpPlot.R |only boostmtree-1.5.1/boostmtree/inst/NEWS |only boostmtree-1.5.1/boostmtree/man/marginalPlot.Rd |only boostmtree-1.5.1/boostmtree/man/partialPlot.Rd |only boostmtree-1.5.1/boostmtree/man/vimpPlot.Rd |only boostmtree-2.0.0/boostmtree/DESCRIPTION | 21 boostmtree-2.0.0/boostmtree/MD5 | 73 boostmtree-2.0.0/boostmtree/NAMESPACE | 29 boostmtree-2.0.0/boostmtree/NEWS.md |only boostmtree-2.0.0/boostmtree/R/boostmtree.R | 1218 ++--------- boostmtree-2.0.0/boostmtree/R/boostmtree.news.R | 68 boostmtree-2.0.0/boostmtree/R/boostmtree_control.R |only boostmtree-2.0.0/boostmtree/R/boostmtree_display.R |only boostmtree-2.0.0/boostmtree/R/boostmtree_fit_tree.R |only boostmtree-2.0.0/boostmtree/R/boostmtree_math.R |only boostmtree-2.0.0/boostmtree/R/boostmtree_object.R |only boostmtree-2.0.0/boostmtree/R/boostmtree_preprocess.R |only boostmtree-2.0.0/boostmtree/R/boostmtree_response.R |only boostmtree-2.0.0/boostmtree/R/generic.predict.boostmtree.R | 1226 +++++------- boostmtree-2.0.0/boostmtree/R/marginal_plot.boostmtree.R |only boostmtree-2.0.0/boostmtree/R/partial_plot.boostmtree.R |only boostmtree-2.0.0/boostmtree/R/plot.boostmtree.R | 470 +--- boostmtree-2.0.0/boostmtree/R/plot.vimp.boostmtree.R |only boostmtree-2.0.0/boostmtree/R/predict.boostmtree.R | 111 - boostmtree-2.0.0/boostmtree/R/print.boostmtree.R | 228 -- boostmtree-2.0.0/boostmtree/R/simLong.R | 267 +- boostmtree-2.0.0/boostmtree/R/utilities.R | 606 +---- boostmtree-2.0.0/boostmtree/R/vimp.boostmtree.R | 1021 +++++---- boostmtree-2.0.0/boostmtree/R/zzz.R | 66 boostmtree-2.0.0/boostmtree/data/AF.RData |binary boostmtree-2.0.0/boostmtree/data/spirometry.RData |binary boostmtree-2.0.0/boostmtree/inst/CITATION | 8 boostmtree-2.0.0/boostmtree/inst/copyright |only boostmtree-2.0.0/boostmtree/man/AF.Rd | 34 boostmtree-2.0.0/boostmtree/man/boostmtree.Rd | 912 +++++--- boostmtree-2.0.0/boostmtree/man/boostmtree.control.Rd |only boostmtree-2.0.0/boostmtree/man/boostmtree.news.Rd | 2 boostmtree-2.0.0/boostmtree/man/boostmtree_package.Rd | 56 boostmtree-2.0.0/boostmtree/man/marginal.plot.boostmtree.Rd |only boostmtree-2.0.0/boostmtree/man/partial.plot.boostmtree.Rd |only boostmtree-2.0.0/boostmtree/man/plot.boostmtree.Rd | 130 + boostmtree-2.0.0/boostmtree/man/plot.vimp.boostmtree.Rd |only boostmtree-2.0.0/boostmtree/man/predict.boostmtree.Rd | 489 ++-- boostmtree-2.0.0/boostmtree/man/print.boostmtree.Rd | 84 boostmtree-2.0.0/boostmtree/man/simLong.Rd | 131 - boostmtree-2.0.0/boostmtree/man/spirometry.Rd | 19 boostmtree-2.0.0/boostmtree/man/vimp.boostmtree.Rd | 180 + 49 files changed, 3214 insertions(+), 4235 deletions(-)
Title: Word Puzzle Game
Description: The word puzzle game requires you to find out the letters in a word within a limited number of guesses. In each round, if your guess hit any letters in the word, they reveal themselves. If all letters are revealed before your guesses run out, you win this game; otherwise you fail. You may run multiple games to guess different words.
Author: Xiurui Zhu [aut, cre],
@olivroy [ctb]
Maintainer: Xiurui Zhu <zxr6@163.com>
Diff between wordPuzzleR versions 0.1.1 dated 2024-02-24 and 0.1.2 dated 2026-04-10
DESCRIPTION | 12 +++---- MD5 | 10 +++--- NAMESPACE | 14 ++++----- NEWS.md | 9 +++++ README.md | 6 +-- man/wordPuzzleR-package.Rd | 68 ++++++++++++++++++++++----------------------- 6 files changed, 63 insertions(+), 56 deletions(-)
Title: Deploy Docs, Apps, and APIs to 'Posit Connect', 'shinyapps.io',
and 'RPubs'
Description: Programmatic deployment interface for 'RPubs',
'shinyapps.io', and 'Posit Connect'. Supported content types include R
Markdown documents, Shiny applications, Plumber APIs, plots, and
static web content.
Author: Aron Atkins [aut, cre],
Toph Allen [aut],
Hadley Wickham [aut],
Jonathan McPherson [aut],
JJ Allaire [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Aron Atkins <aron@posit.co>
Diff between rsconnect versions 1.7.0 dated 2025-12-06 and 1.8.0 dated 2026-04-10
rsconnect-1.7.0/rsconnect/R/http-curl.R |only rsconnect-1.7.0/rsconnect/R/http-internal.R |only rsconnect-1.7.0/rsconnect/R/http-rcurl.R |only rsconnect-1.7.0/rsconnect/R/servers-deprec.R |only rsconnect-1.7.0/rsconnect/R/static-analysis.R |only rsconnect-1.7.0/rsconnect/man/addConnectServer.Rd |only rsconnect-1.7.0/rsconnect/man/authorizedUsers.Rd |only rsconnect-1.7.0/rsconnect/man/discoverServers.Rd |only rsconnect-1.7.0/rsconnect/tests/testthat/_snaps/servers-deprec.md |only rsconnect-1.7.0/rsconnect/tests/testthat/test-http-curl.R |only rsconnect-1.7.0/rsconnect/tests/testthat/test-http-internal.R |only rsconnect-1.7.0/rsconnect/tests/testthat/test-http-rcurl.R |only rsconnect-1.7.0/rsconnect/tests/testthat/test-servers-deprec.R |only rsconnect-1.8.0/rsconnect/DESCRIPTION | 18 rsconnect-1.8.0/rsconnect/MD5 | 114 ++--- rsconnect-1.8.0/rsconnect/NAMESPACE | 3 rsconnect-1.8.0/rsconnect/NEWS.md | 51 ++ rsconnect-1.8.0/rsconnect/R/accounts.R | 64 +++ rsconnect-1.8.0/rsconnect/R/appMetadata.R | 11 rsconnect-1.8.0/rsconnect/R/applications.R | 90 ---- rsconnect-1.8.0/rsconnect/R/auth.R | 8 rsconnect-1.8.0/rsconnect/R/bundle.R | 39 +- rsconnect-1.8.0/rsconnect/R/bundlePackage.R | 5 rsconnect-1.8.0/rsconnect/R/bundlePackageRenv.R | 70 ++- rsconnect-1.8.0/rsconnect/R/client-connect.R | 195 +++++----- rsconnect-1.8.0/rsconnect/R/client-connectCloud.R | 3 rsconnect-1.8.0/rsconnect/R/client-identityFederation.R |only rsconnect-1.8.0/rsconnect/R/client.R | 20 - rsconnect-1.8.0/rsconnect/R/configureApp.R | 8 rsconnect-1.8.0/rsconnect/R/deployApp.R | 45 -- rsconnect-1.8.0/rsconnect/R/http-httr2.R |only rsconnect-1.8.0/rsconnect/R/http.R | 172 +++++--- rsconnect-1.8.0/rsconnect/R/ide.R | 17 rsconnect-1.8.0/rsconnect/R/rpubs.R | 16 rsconnect-1.8.0/rsconnect/R/servers.R | 16 rsconnect-1.8.0/rsconnect/R/writeManifest.R | 2 rsconnect-1.8.0/rsconnect/man/addServer.Rd | 5 rsconnect-1.8.0/rsconnect/man/connectSPCSUser.Rd | 11 rsconnect-1.8.0/rsconnect/man/deployApp.Rd | 9 rsconnect-1.8.0/rsconnect/man/options.Rd | 15 rsconnect-1.8.0/rsconnect/man/showLogs.Rd | 8 rsconnect-1.8.0/rsconnect/man/writeManifest.Rd | 7 rsconnect-1.8.0/rsconnect/tests/integration |only rsconnect-1.8.0/rsconnect/tests/shinyapps-integration |only rsconnect-1.8.0/rsconnect/tests/testthat/_snaps/appMetadata.md | 9 rsconnect-1.8.0/rsconnect/tests/testthat/_snaps/bundlePackage.md | 16 rsconnect-1.8.0/rsconnect/tests/testthat/_snaps/bundlePackageRenv.md | 2 rsconnect-1.8.0/rsconnect/tests/testthat/_snaps/client-connect.md | 22 + rsconnect-1.8.0/rsconnect/tests/testthat/_snaps/deployApp.md | 11 rsconnect-1.8.0/rsconnect/tests/testthat/_snaps/http.md | 10 rsconnect-1.8.0/rsconnect/tests/testthat/helper.R | 38 - rsconnect-1.8.0/rsconnect/tests/testthat/test-accounts.R | 80 ++++ rsconnect-1.8.0/rsconnect/tests/testthat/test-appMetadata.R | 8 rsconnect-1.8.0/rsconnect/tests/testthat/test-bundle.R | 23 + rsconnect-1.8.0/rsconnect/tests/testthat/test-bundlePackage.R | 92 ++++ rsconnect-1.8.0/rsconnect/tests/testthat/test-bundlePackageRenv.R | 122 +++++- rsconnect-1.8.0/rsconnect/tests/testthat/test-cert.R | 32 - rsconnect-1.8.0/rsconnect/tests/testthat/test-client-connect.R | 88 ++++ rsconnect-1.8.0/rsconnect/tests/testthat/test-deployApp.R | 7 rsconnect-1.8.0/rsconnect/tests/testthat/test-http-httr2.R |only rsconnect-1.8.0/rsconnect/tests/testthat/test-http-libcurl.R | 4 rsconnect-1.8.0/rsconnect/tests/testthat/test-http.R | 5 rsconnect-1.8.0/rsconnect/tests/testthat/test-identityFederation.R |only rsconnect-1.8.0/rsconnect/tests/testthat/test-spcs.R | 81 ++++ rsconnect-1.8.0/rsconnect/tests/testthat/test-writeManifest.R | 61 +++ 65 files changed, 1174 insertions(+), 559 deletions(-)
Title: Write Reusable, Composable and Modular R Code
Description: A modern module system for R. Organise code into hierarchical,
composable, reusable modules, and use it effortlessly across projects via a
flexible, declarative dependency loading syntax.
Author: Konrad Rudolph [aut, cre] ,
Michael Schubert [ctb]
Maintainer: Konrad Rudolph <konrad.rudolph@gmail.com>
Diff between box versions 1.2.1 dated 2025-11-28 and 1.2.2 dated 2026-04-10
DESCRIPTION | 6 +-- LICENSE | 2 - MD5 | 47 +++++++++++++------------ NEWS.md | 7 +++ R/S3.r | 4 +- build/vignette.rds |binary inst/doc/box.html | 9 ++-- inst/doc/box.rmd | 2 - inst/doc/compiled-code.html | 7 +-- inst/doc/contributing.html | 7 +-- inst/doc/faq.html | 7 +-- inst/doc/migration.html | 7 +-- inst/doc/mod-envs.html | 9 ++-- inst/doc/related.html | 6 +-- inst/doc/related.rmd | 2 - inst/doc/testing.html | 7 +-- man/register_S3_method.Rd | 4 +- src/lookup.c | 36 +++++++++++++------ tests/testthat/helper-expect.r | 68 +++++++++++++++++++++++++++---------- tests/testthat/mod/active2.r |only tests/testthat/test-active.r | 27 ++++++++++++++ tests/testthat/test-expectations.r | 32 +++++++++++++++++ tests/testthat/test-reload.r | 2 - vignettes/box.rmd | 2 - vignettes/related.rmd | 2 - 25 files changed, 203 insertions(+), 99 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-07-30 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-31 2016.05.31
2015-06-26 2015.06.25
2012-04-04 2012.04-0
2009-10-30 1.0.3
2009-01-30 1.0.2
2008-03-06 1.0.1
2008-03-04 1.0.0
2007-10-21 0.2-2
2005-03-15 0.2-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-23 1.2.7.1
2022-05-27 1.2.7
2016-08-12 1.2.5
2016-08-11 1.2.4
2015-08-12 1.2.3
2015-03-16 1.2.1
2014-12-13 1.1.9
2014-11-11 1.1.8
2014-05-28 1.1.2
2014-03-27 1.1.1
2012-09-22 1.0-5
2011-08-30 0.5-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-09-18 0.0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-09-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-10 1.8.5
2020-03-03 1.8.4
2017-02-27 1.8.3
2014-12-19 1.7
2013-11-19 1.6
2012-03-29 1.5
2011-12-07 1.4
2011-08-25 1.3
2011-02-16 1.2
2011-02-11 1.1
2011-01-31 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-21 1.2
2018-07-01 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-25 0.4.2
2019-05-20 0.4.1
2019-05-12 0.4.0
2017-07-16 0.3.2
2016-12-05 0.3.1
2016-10-03 0.3.0
2015-11-10 0.2.3
2015-10-09 0.2.2
2015-07-18 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-07-14 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-06-13 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-03-13 0.2.0.1002
2024-02-17 0.2.0.1001
2021-06-07 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-28 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-25 1.26.1
2024-10-28 1.24.10
2024-05-15 1.24.5
2019-09-11 1.1.1
2019-09-07 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-12-27 0.0.12.1
2022-08-09 0.0.12
2021-04-02 0.0.11
2021-02-20 0.0.10
2020-09-07 0.0.9
2020-06-25 0.0.8
2019-11-05 0.0.7
2019-09-29 0.0.6
2019-08-26 0.0.5
2019-07-27 0.0.4
2019-06-27 0.0.3
2019-05-23 0.0.2
2019-04-24 0.0.1
Title: Read and Write ODS Files
Description: Read ODS (OpenDocument Spreadsheet) into R as data frame. Also support writing data frame into ODS file.
Author: Gerrit-Jan Schutten [aut],
Chung-hong Chan [aut, cre] ,
Peter Brohan [aut],
Detlef Steuer [aut] ,
Thomas J. Leeper [aut] ,
John Foster [ctb],
Sergio Oller [ctb],
Jim Hester [ctb] ,
Stephen Watts [ctb],
Arthur Katossky [ctb],
Stas Malavin [ctb],
Dunca [...truncated...]
Maintainer: Chung-hong Chan <chainsawtiney@gmail.com>
Diff between readODS versions 2.3.2 dated 2025-01-13 and 2.3.4 dated 2026-04-10
DESCRIPTION | 25 MD5 | 64 NAMESPACE | 2 NEWS.md | 12 R/readODS-package.R | 3 R/read_ods.R | 168 + R/utils.R | 8 R/write_ods.R | 2 build/vignette.rds |binary inst/WORDLIST | 4 man/readODS-package.Rd | 1 man/readODS_progress.Rd |only man/read_ods.Rd | 12 src/cpp11.cpp | 32 src/get_sheet_names.cpp | 182 - src/is_ods.cpp | 208 - src/is_ods.h | 6 src/rapidxml/rapidxml.hpp | 4873 +++++++++++++++++------------------- src/rapidxml/rapidxml_ext.hpp | 32 src/rapidxml/rapidxml_iterators.hpp | 276 -- src/rapidxml/rapidxml_print.hpp | 802 +++-- src/rapidxml/rapidxml_utils.hpp | 192 - src/read_flat_ods_.cpp | 102 src/read_ods_.cpp | 75 src/read_ods_internals.cpp | 513 ++- src/read_ods_internals.h | 35 src/readxl/zip.cpp | 8 src/readxl/zip.h | 5 src/splice.cpp | 175 - src/splice.h | 10 src/write_sheet_file_.cpp | 346 +- src/write_sheet_file_.h | 20 tests/testthat/test_progress.R |only tests/testthat/test_write_ods.R | 29 34 files changed, 4339 insertions(+), 3883 deletions(-)
Title: Fast Unified Random Forests for Survival, Regression, and
Classification (RF-SRC)
Description: Fast OpenMP parallel computing of Breiman's random forests for univariate, multivariate, unsupervised, survival, competing risks, class imbalanced classification and quantile regression. New Mahalanobis splitting for correlated outcomes. Extreme random forests and randomized splitting. Suite of imputation methods for missing data. Fast random forests using subsampling. Confidence regions and standard errors for variable importance. New improved holdout importance. Case-specific importance. Minimal depth variable importance. Visualize trees on your Safari or Google Chrome browser. Anonymous random forests for data privacy.
Author: Hemant Ishwaran [aut],
Udaya B. Kogalur [aut, cre]
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between randomForestSRC versions 3.6.0 dated 2026-03-25 and 3.6.1 dated 2026-04-10
randomForestSRC-3.6.0/randomForestSRC/inst/NEWS |only randomForestSRC-3.6.1/randomForestSRC/DESCRIPTION | 8 randomForestSRC-3.6.1/randomForestSRC/MD5 | 19 randomForestSRC-3.6.1/randomForestSRC/NAMESPACE | 2 randomForestSRC-3.6.1/randomForestSRC/NEWS.md |only randomForestSRC-3.6.1/randomForestSRC/R/generic.predict.rfsrc.R | 2 randomForestSRC-3.6.1/randomForestSRC/R/impute.learn.rfsrc.R | 371 +++++++--- randomForestSRC-3.6.1/randomForestSRC/R/rfsrc.R | 4 randomForestSRC-3.6.1/randomForestSRC/R/utilities_impute.R | 1 randomForestSRC-3.6.1/randomForestSRC/R/utilities_impute.learn.R | 351 +++++++++ randomForestSRC-3.6.1/randomForestSRC/man/impute.learn.rfsrc.Rd | 187 ++++- randomForestSRC-3.6.1/randomForestSRC/src/Makevars |only 12 files changed, 793 insertions(+), 152 deletions(-)
More information about randomForestSRC at CRAN
Permanent link
Title: Portfolio Analysis, Including Numerical Methods for Optimization
of Portfolios
Description: Portfolio optimization and analysis routines and graphics.
Author: Brian G. Peterson [cre, aut, cph],
Peter Carl [aut, cph],
Ross Bennett [ctb, cph],
Kris Boudt [ctb, cph],
Xinran Zhao [ctb, cph],
R. Douglas Martin [ctb],
Guy Yollin [ctb],
Hezky Varon [ctb],
Xiaokang Feng [ctb],
Yifu Kang [ctb]
Maintainer: Brian G. Peterson <brian@braverock.com>
Diff between PortfolioAnalytics versions 2.1.1 dated 2026-02-04 and 2.1.2 dated 2026-04-10
DESCRIPTION | 8 MD5 | 61 NAMESPACE | 1 R/ac_ranking.R | 144 - R/applyFUN.R | 11 R/charts.efficient.frontier.R | 4 R/extract.efficient.frontier.R | 95 + R/extractrisk.R | 46 R/optimize.portfolio.R | 2604 +++++++++++++++++---------------- R/plotFrontiers.R | 27 build/vignette.rds |binary demo/demo_JPM2024MinDownsideRiskCVXR.R | 16 inst/doc/ROI_vignette.pdf |binary inst/doc/custom_moments_objectives.pdf |binary inst/doc/cvxrPortfolioAnalytics.pdf |binary inst/doc/portfolio_vignette.pdf |binary inst/doc/risk_budget_optimization.pdf |binary inst/doc/robustCovMatForPA.pdf |binary man/MycovRobMcd.Rd | 2 man/MycovRobTSGS.Rd | 2 man/ac.ranking.Rd | 16 man/centroid.buckets.Rd | 6 man/centroid.complete.mc.Rd | 6 man/centroid.sectors.Rd | 2 man/centroid.sign.Rd | 8 man/extract_risk.Rd | 11 man/meaneqs.efficient.frontier.Rd |only man/meanrisk.efficient.frontier.Rd | 4 man/optimize.portfolio.Rd | 48 man/optimize.portfolio.parallel.Rd | 8 man/optimize.portfolio.rebalancing.Rd | 76 man/plotFrontiers.Rd | 23 32 files changed, 1718 insertions(+), 1511 deletions(-)
More information about PortfolioAnalytics at CRAN
Permanent link
Title: Nonlinear Nonparametric Statistics
Description: NNS (Nonlinear Nonparametric Statistics) leverages partial moments – the fundamental elements of variance that asymptotically approximate the area under f(x) – to provide a robust foundation for nonlinear analysis while maintaining linear equivalences. Designed for real-world data that violates symmetry, linearity, or distributional assumptions, NNS delivers a comprehensive suite of advanced statistical techniques, including: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization, Stochastic superiority / dominance and Advanced Monte Carlo sampling. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995, Second edition: <https://ovvo-financial.github.io/NNS/book/>).
Author: Fred Viole [aut, cre],
Roberto Spadim [ctb]
Maintainer: Fred Viole <ovvo.open.source@gmail.com>
Diff between NNS versions 11.6.5 dated 2026-03-11 and 12.0 dated 2026-04-10
NNS-11.6.5/NNS/R/Dependence_matrix.R |only NNS-11.6.5/NNS/R/NNS_term_matrix.R |only NNS-11.6.5/NNS/man/NNS.term.matrix.Rd |only NNS-12.0/NNS/DESCRIPTION | 13 NNS-12.0/NNS/MD5 | 167 +- NNS-12.0/NNS/NAMESPACE | 2 NNS-12.0/NNS/R/ANOVA.R | 110 - NNS-12.0/NNS/R/ARMA.R | 2 NNS-12.0/NNS/R/ARMA_optim.R | 2 NNS-12.0/NNS/R/Binary_ANOVA.R | 11 NNS-12.0/NNS/R/Boost.R | 263 ++-- NNS-12.0/NNS/R/Causation.R | 2 NNS-12.0/NNS/R/Dependence.R | 309 +++-- NNS-12.0/NNS/R/LPM_UPM_VaR.R | 4 NNS-12.0/NNS/R/NNS-package.R | 2 NNS-12.0/NNS/R/NNS_VAR.R | 2 NNS-12.0/NNS/R/Normalization.R | 2 NNS-12.0/NNS/R/Nowcast.R | 2 NNS-12.0/NNS/R/Numerical_Differentiation.R | 441 ++++--- NNS-12.0/NNS/R/Partial_Moments.R | 30 NNS-12.0/NNS/R/Partition_Map.R | 2 NNS-12.0/NNS/R/RcppExports.R | 12 NNS-12.0/NNS/R/Regression.R | 2 NNS-12.0/NNS/R/Seasonality_Test.R | 2 NNS-12.0/NNS/R/Stack.R | 167 ++ NNS-12.0/NNS/R/Stochastic_superiority.R |only NNS-12.0/NNS/R/dy_d_wrt.R | 2 NNS-12.0/NNS/R/dy_dx.R | 2 NNS-12.0/NNS/README.md | 12 NNS-12.0/NNS/build/vignette.rds |binary NNS-12.0/NNS/inst/doc/NNSvignette_Classification.Rmd | 4 NNS-12.0/NNS/inst/doc/NNSvignette_Classification.html | 66 - NNS-12.0/NNS/inst/doc/NNSvignette_Clustering_and_Regression.Rmd | 21 NNS-12.0/NNS/inst/doc/NNSvignette_Clustering_and_Regression.html | 20 NNS-12.0/NNS/inst/doc/NNSvignette_Comparing_Distributions.R | 36 NNS-12.0/NNS/inst/doc/NNSvignette_Comparing_Distributions.Rmd | 82 + NNS-12.0/NNS/inst/doc/NNSvignette_Comparing_Distributions.html | 123 +- NNS-12.0/NNS/inst/doc/NNSvignette_Correlation_and_Dependence.Rmd | 10 NNS-12.0/NNS/inst/doc/NNSvignette_Correlation_and_Dependence.html | 22 NNS-12.0/NNS/inst/doc/NNSvignette_Forecasting.Rmd | 4 NNS-12.0/NNS/inst/doc/NNSvignette_Forecasting.html | 2 NNS-12.0/NNS/inst/doc/NNSvignette_Normalization_and_Rescaling.Rmd | 4 NNS-12.0/NNS/inst/doc/NNSvignette_Normalization_and_Rescaling.html | 2 NNS-12.0/NNS/inst/doc/NNSvignette_Overview.R | 44 NNS-12.0/NNS/inst/doc/NNSvignette_Overview.Rmd | 218 ++- NNS-12.0/NNS/inst/doc/NNSvignette_Overview.html | 590 ++++++---- NNS-12.0/NNS/inst/doc/NNSvignette_Partial_Moments.R | 2 NNS-12.0/NNS/inst/doc/NNSvignette_Partial_Moments.Rmd | 16 NNS-12.0/NNS/inst/doc/NNSvignette_Partial_Moments.html | 6 NNS-12.0/NNS/inst/doc/NNSvignette_Sampling.Rmd | 4 NNS-12.0/NNS/inst/doc/NNSvignette_Sampling.html | 2 NNS-12.0/NNS/man/LPM.Rd | 13 NNS-12.0/NNS/man/LPM.VaR.Rd | 2 NNS-12.0/NNS/man/NNS.ANOVA.Rd | 8 NNS-12.0/NNS/man/NNS.ARMA.Rd | 2 NNS-12.0/NNS/man/NNS.ARMA.optim.Rd | 2 NNS-12.0/NNS/man/NNS.CDF.Rd | 2 NNS-12.0/NNS/man/NNS.Rd | 3 NNS-12.0/NNS/man/NNS.SS.Rd |only NNS-12.0/NNS/man/NNS.VAR.Rd | 2 NNS-12.0/NNS/man/NNS.boost.Rd | 3 NNS-12.0/NNS/man/NNS.caus.Rd | 2 NNS-12.0/NNS/man/NNS.dep.Rd | 92 - NNS-12.0/NNS/man/NNS.diff.Rd | 29 NNS-12.0/NNS/man/NNS.moments.Rd | 2 NNS-12.0/NNS/man/NNS.norm.Rd | 2 NNS-12.0/NNS/man/NNS.nowcast.Rd | 2 NNS-12.0/NNS/man/NNS.part.Rd | 2 NNS-12.0/NNS/man/NNS.reg.Rd | 2 NNS-12.0/NNS/man/NNS.seas.Rd | 2 NNS-12.0/NNS/man/UPM.Rd | 13 NNS-12.0/NNS/man/UPM.VaR.Rd | 2 NNS-12.0/NNS/man/dy.d_.Rd | 2 NNS-12.0/NNS/man/dy.dx.Rd | 2 NNS-12.0/NNS/src/NNS_dep.cpp |only NNS-12.0/NNS/src/RcppExports.cpp | 42 NNS-12.0/NNS/src/internal_functions.cpp | 8 NNS-12.0/NNS/src/stoch_sup.cpp |only NNS-12.0/NNS/tests/testthat/Rplots.pdf |binary NNS-12.0/NNS/vignettes/NNSvignette_Classification.Rmd | 4 NNS-12.0/NNS/vignettes/NNSvignette_Clustering_and_Regression.Rmd | 21 NNS-12.0/NNS/vignettes/NNSvignette_Comparing_Distributions.Rmd | 82 + NNS-12.0/NNS/vignettes/NNSvignette_Correlation_and_Dependence.Rmd | 10 NNS-12.0/NNS/vignettes/NNSvignette_Forecasting.Rmd | 4 NNS-12.0/NNS/vignettes/NNSvignette_Normalization_and_Rescaling.Rmd | 4 NNS-12.0/NNS/vignettes/NNSvignette_Overview.Rmd | 218 ++- NNS-12.0/NNS/vignettes/NNSvignette_Partial_Moments.Rmd | 16 NNS-12.0/NNS/vignettes/NNSvignette_Sampling.Rmd | 4 88 files changed, 2222 insertions(+), 1225 deletions(-)
Title: Solve Systems of Nonlinear Equations
Description: Solve a system of nonlinear equations using a Broyden or a Newton method
with a choice of global strategies such as line search and trust region.
There are options for using a numerical or user supplied Jacobian,
for specifying a banded numerical Jacobian and for allowing
a singular or ill-conditioned Jacobian.
Author: Berend Hasselman [aut] ,
Rob Carnell [aut, cre]
Maintainer: Rob Carnell <bertcarnell@gmail.com>
Diff between nleqslv versions 3.3.6 dated 2026-03-05 and 3.3.7 dated 2026-04-10
nleqslv-3.3.6/nleqslv/build |only nleqslv-3.3.6/nleqslv/inst |only nleqslv-3.3.6/nleqslv/man/print.testnslv.Rd |only nleqslv-3.3.6/nleqslv/man/searchzeros.Rd |only nleqslv-3.3.6/nleqslv/man/zznleqslv-iterationreport.Rd |only nleqslv-3.3.6/nleqslv/tests/brdban.R |only nleqslv-3.3.6/nleqslv/tests/brdban.Rout.save |only nleqslv-3.3.6/nleqslv/tests/brdbanded.R |only nleqslv-3.3.6/nleqslv/tests/brdbanded.Rout.save |only nleqslv-3.3.6/nleqslv/tests/brdtri.R |only nleqslv-3.3.6/nleqslv/tests/brdtri.Rout.save |only nleqslv-3.3.6/nleqslv/tests/brdtrijac.R |only nleqslv-3.3.6/nleqslv/tests/brdtrijac.Rout.save |only nleqslv-3.3.6/nleqslv/tests/chquad.R |only nleqslv-3.3.6/nleqslv/tests/chquad.Rout.save |only nleqslv-3.3.6/nleqslv/tests/control-try.R |only nleqslv-3.3.6/nleqslv/tests/control-try.Rout.save |only nleqslv-3.3.6/nleqslv/tests/dslnex.R |only nleqslv-3.3.6/nleqslv/tests/dslnex.Rout.save |only nleqslv-3.3.6/nleqslv/tests/dslnexCN.R |only nleqslv-3.3.6/nleqslv/tests/dslnexCN.Rout.save |only nleqslv-3.3.6/nleqslv/tests/dslnexHook.R |only nleqslv-3.3.6/nleqslv/tests/dslnexHook.Rout.save |only nleqslv-3.3.6/nleqslv/tests/dslnexauto.R |only nleqslv-3.3.6/nleqslv/tests/dslnexauto.Rout.save |only nleqslv-3.3.6/nleqslv/tests/dslnexjacout.R |only nleqslv-3.3.6/nleqslv/tests/dslnexjacout.Rout.save |only nleqslv-3.3.6/nleqslv/tests/dslnexscaled.R |only nleqslv-3.3.6/nleqslv/tests/dslnexscaled.Rout.save |only nleqslv-3.3.6/nleqslv/tests/singular1.R |only nleqslv-3.3.6/nleqslv/tests/singular1.Rout.save |only nleqslv-3.3.6/nleqslv/tests/singular2.R |only nleqslv-3.3.6/nleqslv/tests/singular2.Rout.save |only nleqslv-3.3.6/nleqslv/tests/singular3.R |only nleqslv-3.3.6/nleqslv/tests/singular3.Rout.save |only nleqslv-3.3.6/nleqslv/tests/trig.R |only nleqslv-3.3.6/nleqslv/tests/trig.Rout.save |only nleqslv-3.3.6/nleqslv/tests/tscalargrad.R |only nleqslv-3.3.6/nleqslv/tests/tscalargrad.Rout.save |only nleqslv-3.3.6/nleqslv/tests/xcutlip1p2.R |only nleqslv-3.3.6/nleqslv/tests/xcutlip1p2.Rout.save |only nleqslv-3.3.6/nleqslv/tests/xnames.R |only nleqslv-3.3.6/nleqslv/tests/xnames.Rout.save |only nleqslv-3.3.6/nleqslv/tests/xsearchzeros.R |only nleqslv-3.3.6/nleqslv/tests/xsearchzeros.Rout.save |only nleqslv-3.3.6/nleqslv/tests/xtestnslv.R |only nleqslv-3.3.6/nleqslv/tests/xtestnslv.Rout.save |only nleqslv-3.3.7/nleqslv/DESCRIPTION | 13 nleqslv-3.3.7/nleqslv/MD5 | 119 +-- nleqslv-3.3.7/nleqslv/NAMESPACE | 9 nleqslv-3.3.7/nleqslv/NEWS | 6 nleqslv-3.3.7/nleqslv/R/nleqslv-iterationreport.R |only nleqslv-3.3.7/nleqslv/R/nleqslv-package.R |only nleqslv-3.3.7/nleqslv/R/nleqslv.R | 523 +++++++++++++-- nleqslv-3.3.7/nleqslv/R/searchzeros.R | 226 ++++-- nleqslv-3.3.7/nleqslv/R/testnslv.R | 301 ++++++--- nleqslv-3.3.7/nleqslv/man/figures |only nleqslv-3.3.7/nleqslv/man/nleqslv-iterationreport.Rd |only nleqslv-3.3.7/nleqslv/man/nleqslv-package.Rd | 78 +- nleqslv-3.3.7/nleqslv/man/nleqslv.Rd | 559 ++++++++--------- nleqslv-3.3.7/nleqslv/man/print.test.nleqslv.Rd |only nleqslv-3.3.7/nleqslv/man/searchZeros.Rd |only nleqslv-3.3.7/nleqslv/man/testnslv.Rd | 122 ++- nleqslv-3.3.7/nleqslv/src/init.c | 4 nleqslv-3.3.7/nleqslv/src/nleqslv.c | 60 - nleqslv-3.3.7/nleqslv/tests/testthat |only nleqslv-3.3.7/nleqslv/tests/testthat.R |only 67 files changed, 1299 insertions(+), 721 deletions(-)
Title: Mixed-Effects Diffusion Models with General Drift
Description: Provides tools for likelihood-based inference in one-dimensional stochastic differential equations with mixed effects using expectation–maximization (EM) algorithms. The package supports Wiener and Ornstein–Uhlenbeck diffusion processes with user-specified drift functions, allowing flexible parametric forms including polynomial, exponential, and trigonometric structures. Estimation is performed via Markov chain Monte Carlo EM.
Author: Pedro Abraham Montoya Calzada [aut, cre, cph] ,
Rogelio Salinas Gutierrez [aut, cph] ,
Silvia Rodriguez-Narciso [aut, cph] ,
Netzahualcoyotl Castaneda-Leyva [aut, cph]
Maintainer: Pedro Abraham Montoya Calzada <pedroabraham.montoya@gmail.com>
Diff between mixediffusion versions 1.0.0 dated 2026-03-20 and 1.0.1 dated 2026-04-10
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/EM_wiener.R | 46 ++++++++++++++++++++++++++-------------------- man/fit_ou.Rd | 2 +- man/fit_wiener.Rd | 6 ++---- 5 files changed, 36 insertions(+), 32 deletions(-)
Title: A General Framework for Latent Classify and Profile Analysis
Description: A unified latent class modeling framework that encompasses both latent class analysis (LCA) and latent profile analysis (LPA), offering a one-stop solution for latent class modeling. It implements state-of-the-art parameter estimation methods, including the expectation–maximization (EM) algorithm, neural network estimation (NNE; requires users to have 'Python' and its dependent libraries installed on their computer), and integration with 'Mplus' (requires users to have 'Mplus' installed on their computer). In addition, it provides commonly used model fit indices such as the Akaike information criterion (AIC) and Bayesian information criterion (BIC), as well as classification accuracy measures such as entropy. The package also includes fully functional likelihood ratio tests (LRT) and bootstrap likelihood ratio tests (BLRT) to facilitate model comparison, along with bootstrap-based and observed information matrix-based standard error estimation. Furthermore, it supports the standard thr [...truncated...]
Author: Haijiang Qin [aut, cre, cph] ,
Lei Guo [aut, cph]
Maintainer: Haijiang Qin <haijiang133@outlook.com>
Diff between LCPA versions 1.0.1 dated 2026-02-27 and 1.0.2 dated 2026-04-10
LCPA-1.0.1/LCPA/tests/main_LCA_attention_10.R |only LCPA-1.0.1/LCPA/tests/main_LPA_attention_10.R |only LCPA-1.0.2/LCPA/DESCRIPTION | 37 +- LCPA-1.0.2/LCPA/MD5 | 105 ++++--- LCPA-1.0.2/LCPA/NAMESPACE | 27 ++ LCPA-1.0.2/LCPA/NEWS.md | 11 LCPA-1.0.2/LCPA/R/Kmeans.LCA.R | 6 LCPA-1.0.2/LCPA/R/LCA.R | 22 - LCPA-1.0.2/LCPA/R/LCPA.R | 44 +-- LCPA-1.0.2/LCPA/R/LPA.R | 7 LCPA-1.0.2/LCPA/R/LRT.test.Bootstrap.R | 282 +++++++++++++++------ LCPA-1.0.2/LCPA/R/LTA.R | 25 + LCPA-1.0.2/LCPA/R/Mplus.LCA.R | 55 +++- LCPA-1.0.2/LCPA/R/Mplus.LPA.R | 195 ++++++++------ LCPA-1.0.2/LCPA/R/S3plot.R |only LCPA-1.0.2/LCPA/R/S3print.R | 97 ++++--- LCPA-1.0.2/LCPA/R/S3summary.R | 19 - LCPA-1.0.2/LCPA/R/S3update.R | 4 LCPA-1.0.2/LCPA/R/adjust.model.R |only LCPA-1.0.2/LCPA/R/adjust.response.R | 26 - LCPA-1.0.2/LCPA/R/check.response.R | 10 LCPA-1.0.2/LCPA/R/compare.model.R | 2 LCPA-1.0.2/LCPA/R/get.Log.Lik.LCA.R | 6 LCPA-1.0.2/LCPA/R/get.P.Z.Xn.LCA.R | 114 ++------ LCPA-1.0.2/LCPA/R/get.P.Z.Xn.LPA.R | 147 ++++------ LCPA-1.0.2/LCPA/R/get.SE.R | 4 LCPA-1.0.2/LCPA/R/install_python_dependencies.R | 165 ++++++------ LCPA-1.0.2/LCPA/R/normalize.R | 2 LCPA-1.0.2/LCPA/R/plotResponse.R | 28 +- LCPA-1.0.2/LCPA/R/sim.LCA.R | 6 LCPA-1.0.2/LCPA/R/sim.LPA.R | 6 LCPA-1.0.2/LCPA/R/sim.LTA.R | 12 LCPA-1.0.2/LCPA/R/tools.R | 18 - LCPA-1.0.2/LCPA/inst/python/Net_LCA.py | 223 +++++++++------- LCPA-1.0.2/LCPA/inst/python/Net_LPA.py | 272 ++++++++++++-------- LCPA-1.0.2/LCPA/man/Kmeans.LCA.Rd | 6 LCPA-1.0.2/LCPA/man/LCA.Rd | 16 - LCPA-1.0.2/LCPA/man/LCPA.Rd | 26 + LCPA-1.0.2/LCPA/man/LPA.Rd | 5 LCPA-1.0.2/LCPA/man/LRT.test.Bootstrap.Rd | 161 +++++++---- LCPA-1.0.2/LCPA/man/LTA.Rd | 6 LCPA-1.0.2/LCPA/man/adjust.model.Rd |only LCPA-1.0.2/LCPA/man/adjust.response.Rd | 26 - LCPA-1.0.2/LCPA/man/check.response.Rd | 10 LCPA-1.0.2/LCPA/man/get.Log.Lik.LCA.Rd | 6 LCPA-1.0.2/LCPA/man/get.P.Z.Xn.LCA.Rd | 70 +---- LCPA-1.0.2/LCPA/man/get.P.Z.Xn.LPA.Rd | 65 +--- LCPA-1.0.2/LCPA/man/get.SE.Rd | 4 LCPA-1.0.2/LCPA/man/install_python_dependencies.Rd | 8 LCPA-1.0.2/LCPA/man/normalize.Rd | 2 LCPA-1.0.2/LCPA/man/plot.Rd |only LCPA-1.0.2/LCPA/man/plotResponse.Rd | 28 +- LCPA-1.0.2/LCPA/man/sim.LCA.Rd | 6 LCPA-1.0.2/LCPA/man/sim.LTA.Rd | 12 LCPA-1.0.2/LCPA/man/summary.Rd | 4 LCPA-1.0.2/LCPA/tests/building.R | 2 LCPA-1.0.2/LCPA/tests/demo.R |only 57 files changed, 1393 insertions(+), 1047 deletions(-)
Title: Semi-Automatic Grading of R and Rmd Scripts
Description: A customisable set of tools for assessing and grading
R or R-markdown scripts from students. It allows for checking correctness
of code output, runtime statistics and static code analysis. The latter
feature is made possible by representing R expressions using a tree
structure.
Author: Vik Gopal [aut],
Agrawal Naman [aut, cre],
Yuting Huang [ctb],
Samuel Seah [aut],
Viknesh Jeya Kumar [aut],
Gabriel Ang [aut],
Ruofan Liu [ctb],
National University of Singapore [cph]
Maintainer: Agrawal Naman <naman.a@nus.edu.sg>
Diff between autoharp versions 0.2.0 dated 2026-02-19 and 0.3.1 dated 2026-04-10
autoharp-0.2.0/autoharp/inst/examples/1910-tut04 |only autoharp-0.2.0/autoharp/inst/examples/2010-tut02 |only autoharp-0.2.0/autoharp/inst/examples/2010-tut07 |only autoharp-0.2.0/autoharp/inst/examples/2010-tut08 |only autoharp-0.2.0/autoharp/inst/examples/2010-tut09 |only autoharp-0.2.0/autoharp/inst/examples/2210-ass01 |only autoharp-0.2.0/autoharp/inst/examples/2210-ass02 |only autoharp-0.2.0/autoharp/inst/examples/README.md |only autoharp-0.2.0/autoharp/inst/examples/learnr-1910-tut04 |only autoharp-0.2.0/autoharp/inst/examples/learnr-2210-ass02 |only autoharp-0.3.1/autoharp/DESCRIPTION | 29 - autoharp-0.3.1/autoharp/MD5 | 165 ++++------ autoharp-0.3.1/autoharp/NEWS | 13 autoharp-0.3.1/autoharp/NEWS.md |only autoharp-0.3.1/autoharp/R/autoharp.R | 2 autoharp-0.3.1/autoharp/R/nlp_related.R | 2 autoharp-0.3.1/autoharp/R/populate_soln_env.R | 4 autoharp-0.3.1/autoharp/README.md |only autoharp-0.3.1/autoharp/build |only autoharp-0.3.1/autoharp/inst/doc |only autoharp-0.3.1/autoharp/inst/examples/example-01 |only autoharp-0.3.1/autoharp/inst/shiny/grading_app |only autoharp-0.3.1/autoharp/inst/shiny/similarity_app/R/helpers.R | 102 ++++-- autoharp-0.3.1/autoharp/inst/shiny/similarity_app/app.R | 67 +++- autoharp-0.3.1/autoharp/man/autoharp.Rd | 5 autoharp-0.3.1/autoharp/man/figures |only autoharp-0.3.1/autoharp/vignettes |only 27 files changed, 241 insertions(+), 148 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-02-25 0.10.3
2021-09-06 0.10.2