Title: Partial Eta-Squared for Crossed, Nested, and Mixed Linear Mixed
Models
Description: Computes partial eta-squared effect sizes for fixed effects in
linear mixed models fitted with the 'lme4' package. Supports crossed,
nested, and mixed (crossed-and-nested) random effects structures with any
number of grouping factors. Mixed designs handle cases where grouping
factors are simultaneously crossed with some variables and nested within
others (e.g., photos nested within models, but both crossed with
participants). Random slope variances are translated to the outcome scale
using a variance decomposition approach, correctly accounting for predictor
scaling and interaction terms. Both general and operative effect sizes are
provided. Methods are based on Correll, Mellinger, McClelland, and Judd
(2020) <doi:10.1016/j.tics.2019.12.009>, Correll, Mellinger, and Pedersen
(2022) <doi:10.3758/s13428-021-01687-2>, and Rights and Sterba (2019)
<doi:10.1037/met0000184>.
Author: Brandon Cohen [aut, cre] ,
Joshua Correll [aut, ths]
Maintainer: Brandon Cohen <brandon.cohen-1@colorado.edu>
Diff between pecanr versions 0.1.2 dated 2026-03-17 and 0.2.0 dated 2026-04-11
DESCRIPTION | 28 + MD5 | 16 - NEWS.md | 34 ++ R/eta2p.R | 774 +++++++++++++++++++++++++++++++++++++------------- README.md | 32 +- inst/WORDLIST | 1 man/batch_eta2p.Rd | 48 ++- man/eta2p.Rd | 175 ++++++++--- man/pecanr-package.Rd | 4 9 files changed, 820 insertions(+), 292 deletions(-)
Title: Goodness of Fit Tests Based on Empirical Distribution Functions
Description: Routines that allow the user to run goodness of fit tests based on empirical distribution functions for formal model evaluation in a general likelihood model. In addition, functions are provided to test if a sample follows Normal or Gamma distributions, validate the normality assumptions in a linear model, and examine the appropriateness of a Gamma distribution in generalized linear models with various link functions. Michael Arthur Stephens (1976) <http://www.jstor.org/stable/2958206>.
Author: Richard Lockhart [aut],
Payman Nickchi [aut, cre]
Maintainer: Payman Nickchi <payman.nickchi@gmail.com>
Diff between gofedf versions 1.0.0 dated 2025-05-29 and 1.1.0 dated 2026-04-11
DESCRIPTION | 8 - MD5 | 36 +++---- R/testExponential.R | 95 +++++++++++++++++--- R/testGLMGamma.R | 151 ++++++++++++++++++++++++------- R/testGamma.R | 137 +++++++++++++++++++++++++--- R/testLMNormal.R | 127 +++++++++++++++++++++++--- R/testNormal.R | 102 +++++++++++++++++++-- R/testYourModel.R | 199 ++++++++++++++++++++++++++++++++++++------ R/utils_gof.R | 162 +++++++++++++++++++++++++++++++--- README.md | 103 ++++++++++----------- build/vignette.rds |binary inst/doc/gofedf-vignette.R | 6 - inst/doc/gofedf-vignette.html | 21 ++-- man/testExponential.Rd | 26 ++++- man/testGLMGamma.Rd | 30 +++++- man/testGamma.Rd | 32 ++++++ man/testLMNormal.Rd | 25 ++++- man/testNormal.Rd | 32 ++++++ man/testYourModel.Rd | 29 +++++- 19 files changed, 1085 insertions(+), 236 deletions(-)
Title: 'a la Carte' on Text (ConText) Embedding Regression
Description: A fast, flexible and transparent framework to estimate context-specific word and short document embeddings using the 'a la carte'
embeddings approach developed by Khodak et al. (2018) <doi:10.48550/arXiv.1805.05388> and evaluate hypotheses about covariate effects on embeddings using
the regression framework developed by Rodriguez et al. (2021)<doi:10.1017/S0003055422001228>. New version of the package applies a new estimator to measure the distance between word embeddings as described in Green et al. (2025) <doi:10.1017/pan.2024.22>.
Author: Pedro L. Rodriguez [aut, cph] ,
Arthur Spirling [aut] ,
Brandon Stewart [aut] ,
Christopher Barrie [ctb] ,
Sofia Avila [cre, aut]
Maintainer: Sofia Avila <sofiaavila@princeton.edu>
Diff between conText versions 3.0.0 dated 2025-09-03 and 3.0.1 dated 2026-04-11
DESCRIPTION | 8 +- MD5 | 14 +-- R/conText.R | 25 ++++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/quickstart.Rmd | 14 ++- inst/doc/quickstart.html | 185 ++++++++++++++++++----------------------------- vignettes/quickstart.Rmd | 14 ++- 8 files changed, 115 insertions(+), 145 deletions(-)
Title: Leakage-Safe Modeling and Auditing for Genomic and Clinical Data
Description: Prevents and detects information leakage in biomedical machine learning.
Provides leakage-resistant split policies (subject-grouped, batch-blocked, study leave-out, time-ordered),
guarded preprocessing (train-only imputation, normalization, filtering, feature selection),
cross-validated fitting with common learners, permutation-gap auditing, batch and fold association tests,
and duplicate detection.
Author: Selcuk Korkmaz [aut, cre]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between bioLeak versions 0.3.5 dated 2026-03-26 and 0.3.6 dated 2026-04-11
DESCRIPTION | 6 - MD5 | 26 ++-- R/audit.R | 55 ++++------ R/ci_delta.R | 4 R/delta_lsi.R | 12 +- R/guards.R | 2 R/permute_labels.R | 14 +- R/simulate_suite.R | 1 R/time_series_blocks.R | 1 R/tune_resample.R | 1 R/utils_metrics.R | 3 R/utils_se.R | 2 build/vignette.rds |binary inst/doc/bioLeak-intro.html | 238 +++++++++++++++++++++----------------------- 14 files changed, 186 insertions(+), 179 deletions(-)
Title: Access 'Federal Reserve Economic Data'
Description: Provides clean, tidy access to economic data from the 'Federal
Reserve Economic Data' ('FRED') API <https://fred.stlouisfed.org/docs/api/fred/>.
'FRED' is maintained by the 'Federal Reserve Bank of St. Louis' and contains over
800,000 time series from 118 sources covering GDP, employment, inflation,
interest rates, trade, and more. Dedicated functions fetch series observations,
search for series, browse categories, releases, and tags, and retrieve series
metadata. Multiple series can be fetched in a single call, in long or wide
format. Server-side unit transformations (percent change, log, etc.) and
frequency aggregation are supported, with readable transform aliases such as
'yoy_pct' and 'log_diff'. Real-time and vintage helpers (built on 'ALFRED')
return a series as it appeared on a given date, the first-release version,
every revision, or a panel of selected vintages. Data is cached locally for
subsequent calls. This product uses the 'FRED' API but is not endorsed or
certified [...truncated...]
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between fred versions 0.1.2 dated 2026-03-19 and 0.2.0 dated 2026-04-11
DESCRIPTION | 19 +-- MD5 | 40 ++++-- NAMESPACE | 6 NEWS.md | 32 +++++ R/auth.R | 4 R/cache.R | 79 ++++++++++++ R/class.R |only R/format.R |only R/releases.R | 4 R/series.R | 252 ++++++++++++++++++++++++++++------------- R/vintages.R |only inst/WORDLIST |only man/clear_cache.Rd | 1 man/fred-package.Rd | 2 man/fred_all_vintages.Rd |only man/fred_as_of.Rd |only man/fred_cache_info.Rd |only man/fred_first_release.Rd |only man/fred_get_key.Rd | 1 man/fred_real_time_panel.Rd |only man/fred_request.Rd | 1 man/fred_series.Rd | 53 +++++--- man/fred_set_key.Rd | 5 man/print.fred_tbl.Rd |only tests/testthat/test-cache.R | 26 ++++ tests/testthat/test-format.R |only tests/testthat/test-vintages.R |only 27 files changed, 397 insertions(+), 128 deletions(-)
Title: Convenient Access to NYC Open Data API Endpoints
Description: Provides a unified set of helper functions to access datasets
from the NYC Open Data platform <https://opendata.cityofnewyork.us/>.
Functions return results as tidy tibbles and support optional filtering,
sorting, and row limits via the Socrata API. The package includes endpoints
for 311 service requests, DOB job applications, juvenile justice metrics,
school safety, environmental data, event permitting, and additional citywide datasets.
Author: Christian Martinez [aut, cre] ,
Crystal Adote [ctb] ,
Jonah Dratfield [ctb] ,
Joyce Escatel-Flores [ctb] ,
Rob Hutto [ctb] ,
Isley Jean-Pierre [ctb] ,
Shannon Joyce [ctb] ,
Laura Rose-Werner [ctb] ,
Emma Tupone [ctb] ,
Xinru Wang [ctb]
Maintainer: Christian Martinez <c.martinez0@outlook.com>
Diff between nycOpenData versions 0.1.6 dated 2026-02-14 and 0.2.1 dated 2026-04-11
nycOpenData-0.1.6/nycOpenData/R/nyc_311.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_311_2010_2019.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_borough_community_report.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_borough_population.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_cause_of_death.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_city_record.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_civil_service_list.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_daily_attendance_2018_2019.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_detention_admissions.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_dhs_daily_report.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_dob_job_applications.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_dob_permit_issuance.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_domestic_violence_annual_report.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_dop_juvenile_cases.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_dop_juvenile_rearrest_rate.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_events_sealevel.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_film_permits.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_for_hire_vehicles.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_ha_violations.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_homeless_drop_in_centers.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_homeless_population_by_year.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_ll97_shelter_pets.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_locallaw18_payreport.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_medallion_drivers_active.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_medallion_drivers_authorized.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_motor_vehicle_collisions_crashes.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_museum_locations.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_nypd_hate_crimes.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_open_parking_camera_violations.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_period_attendance_reporting.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_permit_events_historic.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_pets_in_shelters.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_restaurant_inspection_results.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_runaway_and_homeless_youth_daily_census.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_school_discharge.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_school_discharge_report_2013_2015.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_school_discharge_report_2015_2018.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_shooting_incidents.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_slash_stab.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_street_hail_livery_active.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_tlc_new_driver_app_status.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_tree_census_2015.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_urban_park_animal_condition.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_violent_disruptive_school_incidents.R |only nycOpenData-0.1.6/nycOpenData/R/nyc_wetlands.R |only nycOpenData-0.1.6/nycOpenData/man/nyc_311.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_311_2010_2019.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_borough_community_report.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_borough_population.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_cause_of_death.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_city_record.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_civil_service_list.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_daily_attendance_2018_2019.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_detention_admissions.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_dhs_daily_report.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_dob_job_applications.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_dob_permit_issuance.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_domestic_violence_annual_report.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_dop_juvenile_cases.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_dop_juvenile_rearrest_rate.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_events_sealevel.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_film_permits.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_for_hire_vehicles.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_ha_violations.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_homeless_drop_in_centers.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_homeless_population_by_year.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_locallaw18_payreport.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_locallaw97_shelter_pets.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_medallion_drivers_active.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_medallion_drivers_authorized.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_motor_vehicle_collisions_crashes.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_museum_locations.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_nypd_hate_crimes.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_open_parking_camera_violations.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_period_attendance_reporting.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_permit_events_historic.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_pets_in_shelters.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_restaurant_inspection_results.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_runaway_and_homeless_youth_daily_census.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_school_discharge.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_school_discharge_report_2013_2015.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_school_discharge_report_2015_2018.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_shooting_incidents.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_slash_stab.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_street_hail_livery_active.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_tlc_new_driver_app_status.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_tree_census_2015.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_urban_park_animal_condition.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_violent_disruptive_school_incidents.Rd |only nycOpenData-0.1.6/nycOpenData/man/nyc_wetlands.Rd |only nycOpenData-0.1.6/nycOpenData/tests/testthat/fixtures |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_311.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_311_2010_2019.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_borough_community_report.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_borough_population.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_cause_of_death.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_city_record.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_civil_service_list.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_daily_attendance_2018_2019.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_detention_admissions.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_dhs_daily_report.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_dob_job_applications.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_dob_permit_issuance.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_domestic_violence_annual_report.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_dop_juvenile_cases.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_dop_juvenile_rearrest_rate.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_events_sealevel.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_film_permits_test.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_for_hire_vehicles.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_ha_violations.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_homeless_drop_in_centers.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_homeless_population_by_year.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_locallaw18_payreport.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_locallaw97_shelter_pets.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_medallion_drivers_active.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_medallion_drivers_authorized.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_motor_vehicle_collisions_crashes.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_museum_locations.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_nypd_hate_crimes.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_open_parking_camera_violations.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_period_attendance_reporting.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_permit_events_historic.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_pets_in_shelters.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_restaurant_inspection_results.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_runaway_and_homeless_youth_daily_census.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_school_discharge.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_school_discharge_report_2013_2015.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_school_discharge_report_2015_2018.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_shooting_incidents.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_slash_stab.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_street_hail_livery_active.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_tlc_new_driver_app_status.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_tree_census_2015.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_urban_park_animal_condition_test.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_violent_disruptive_school_incidents.R |only nycOpenData-0.1.6/nycOpenData/tests/testthat/test-nyc_wetlands.R |only nycOpenData-0.2.1/nycOpenData/DESCRIPTION | 13 nycOpenData-0.2.1/nycOpenData/MD5 | 277 --- nycOpenData-0.2.1/nycOpenData/NAMESPACE | 7 nycOpenData-0.2.1/nycOpenData/NEWS.md | 48 nycOpenData-0.2.1/nycOpenData/R/nyc_any_dataset.R | 22 nycOpenData-0.2.1/nycOpenData/R/nyc_list_datasets.R |only nycOpenData-0.2.1/nycOpenData/R/nyc_pull_dataset.R |only nycOpenData-0.2.1/nycOpenData/R/utils_request.R | 271 +++ nycOpenData-0.2.1/nycOpenData/README.md | 89 - nycOpenData-0.2.1/nycOpenData/inst/CITATION |only nycOpenData-0.2.1/nycOpenData/inst/doc/Analyzing-the-Local-Law-97-of-2021-Pets-in-Shelter-Report.R | 47 nycOpenData-0.2.1/nycOpenData/inst/doc/Analyzing-the-Local-Law-97-of-2021-Pets-in-Shelter-Report.Rmd | 65 nycOpenData-0.2.1/nycOpenData/inst/doc/Analyzing-the-Local-Law-97-of-2021-Pets-in-Shelter-Report.html | 829 ++++------ nycOpenData-0.2.1/nycOpenData/inst/doc/Using-Local-Law18-Pay-Report.R | 35 nycOpenData-0.2.1/nycOpenData/inst/doc/Using-Local-Law18-Pay-Report.Rmd | 47 nycOpenData-0.2.1/nycOpenData/inst/doc/Using-Local-Law18-Pay-Report.html | 229 +- nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-borough-population.R | 33 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-borough-population.Rmd | 57 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-borough-population.html | 243 +- nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-shooting-incidents.R | 9 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-shooting-incidents.Rmd | 19 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-shooting-incidents.html | 70 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_events_sealevel.R | 32 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_events_sealevel.Rmd | 61 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_events_sealevel.html | 158 + nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_wetlands.R | 27 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_wetlands.Rmd | 31 nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_wetlands.html | 119 - nycOpenData-0.2.1/nycOpenData/inst/doc/getting-started.R | 55 nycOpenData-0.2.1/nycOpenData/inst/doc/getting-started.Rmd | 127 + nycOpenData-0.2.1/nycOpenData/inst/doc/getting-started.html | 341 ++-- nycOpenData-0.2.1/nycOpenData/inst/doc/investigating-inmate-incidents.R | 45 nycOpenData-0.2.1/nycOpenData/inst/doc/investigating-inmate-incidents.Rmd | 69 nycOpenData-0.2.1/nycOpenData/inst/doc/investigating-inmate-incidents.html | 177 -- nycOpenData-0.2.1/nycOpenData/inst/doc/nyc_ha_violations.R | 31 nycOpenData-0.2.1/nycOpenData/inst/doc/nyc_ha_violations.Rmd | 50 nycOpenData-0.2.1/nycOpenData/inst/doc/nyc_ha_violations.html | 109 - nycOpenData-0.2.1/nycOpenData/man/nyc_any_dataset.Rd | 12 nycOpenData-0.2.1/nycOpenData/man/nyc_list_datasets.Rd |only nycOpenData-0.2.1/nycOpenData/man/nyc_pull_dataset.Rd |only nycOpenData-0.2.1/nycOpenData/tests/testthat/helper-vcr.R | 27 nycOpenData-0.2.1/nycOpenData/tests/testthat/test-nyc_any_dataset.R |only nycOpenData-0.2.1/nycOpenData/tests/testthat/test-nyc_catalog_and_pull_dataset.R |only nycOpenData-0.2.1/nycOpenData/tests/testthat/test-utils_request.R |only nycOpenData-0.2.1/nycOpenData/tests/testthat/test-validate.R |only nycOpenData-0.2.1/nycOpenData/vignettes/Analyzing-the-Local-Law-97-of-2021-Pets-in-Shelter-Report.Rmd | 65 nycOpenData-0.2.1/nycOpenData/vignettes/Using-Local-Law18-Pay-Report.Rmd | 47 nycOpenData-0.2.1/nycOpenData/vignettes/analyzing-nyc-borough-population.Rmd | 57 nycOpenData-0.2.1/nycOpenData/vignettes/analyzing-nyc-shooting-incidents.Rmd | 19 nycOpenData-0.2.1/nycOpenData/vignettes/analyzing-nyc_events_sealevel.Rmd | 61 nycOpenData-0.2.1/nycOpenData/vignettes/analyzing-nyc_wetlands.Rmd | 31 nycOpenData-0.2.1/nycOpenData/vignettes/getting-started.Rmd | 127 + nycOpenData-0.2.1/nycOpenData/vignettes/investigating-inmate-incidents.Rmd | 69 nycOpenData-0.2.1/nycOpenData/vignettes/nyc_ha_violations.Rmd | 50 190 files changed, 2476 insertions(+), 1931 deletions(-)
Title: Animated Glass-Style Tabs and Multi-Select Filter for 'Shiny'
Description: Tools for creating animated glassmorphism-style tab
navigation and multi-select dropdown filters in 'shiny' applications.
The package provides a tab navigation component and a searchable
multi-select widget with multiple checkbox indicator styles,
select-all controls, and customizable colour themes. The widgets are
compatible with standard 'shiny' layouts and 'bs4Dash' dashboards.
Author: George Arthur [aut, cre]
Maintainer: George Arthur <prigasgenthian48@gmail.com>
Diff between glasstabs versions 0.1.1 dated 2026-03-13 and 0.2.1 dated 2026-04-11
DESCRIPTION | 6 LICENSE | 4 MD5 | 74 +- NAMESPACE | 35 NEWS.md | 54 + R/dependencies.R | 2 R/glassSelect.R | 19 R/glass_multiselect.R | 12 R/glass_tabs.R | 211 +++++ README.md | 59 + build/vignette.rds |binary inst/WORDLIST | 8 inst/doc/cheatsheet.R |only inst/doc/cheatsheet.Rmd |only inst/doc/cheatsheet.html |only inst/doc/getting-started.html | 5 inst/doc/glassSelect.html | 5 inst/doc/multiselect.html | 5 inst/doc/tabs.Rmd | 392 +++++------ inst/doc/tabs.html | 5 inst/examples/basic/testing_js_select.R |only inst/examples/dashboard |only inst/examples/smoke-test |only inst/www/glass.css | 97 ++ inst/www/glass.js | 1139 ++++++++++++++++++++++---------- man/appendGlassTab.Rd |only man/glassMultiSelect.Rd | 182 ++--- man/glassMultiSelectValue.Rd | 90 +- man/glassSelectValue.Rd | 82 +- man/glassTabPanel.Rd | 64 - man/glassTabsServer.Rd | 70 - man/glassTabsUI.Rd | 68 - man/showGlassTab.Rd |only man/updateGlassMultiSelect.Rd | 88 +- man/updateGlassTabsUI.Rd |only man/useGlassTabs.Rd | 64 - tests/testthat.R | 24 tests/testthat/test-dependencies.R | 5 tests/testthat/test-glassselect.R | 16 tests/testthat/test-multiselect.R | 22 tests/testthat/test-tabs.R | 189 +++++ vignettes/cheatsheet.Rmd |only vignettes/tabs.Rmd | 392 +++++------ 43 files changed, 2291 insertions(+), 1197 deletions(-)
Title: Fast and Efficient Processing of PAM Data
Description: Processing Chlorophyll Fluorescence & P700 Absorbance data. Four models are provided for the regression of Pi curves, which can be compared with each other in order to select the most suitable model for the data set. Control plots ensure the successful verification of each regression. Bundled output of alpha, ETRmax, Ik etc. enables fast and reliable further processing of the data.
Author: Julien Boehm [cre, aut] ,
Philipp Schrag [aut]
Maintainer: Julien Boehm <julien.boehm@uni-rostock.de>
Diff between pam versions 2.1.0 dated 2026-04-11 and 2.1.1 dated 2026-04-11
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/CITATION | 2 +- tests/testthat/helper-os-detection.R | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Functional Utilities for Data Processing
Description: Covers several areas of data processing: batch-splitting, reading and writing of large
data files, data tiling, one-hot encoding and decoding of data tiles, stratified proportional
(random or probabilistic) data sampling, data normalization and thresholding, substring location
and commonalities inside strings and location and tabulation of amino acids, modifications or
associated monoisotopic masses inside modified peptides. The extractor utility implements code from
'Matrix.utils', Varrichio C (2020), <https://cran.r-project.org/package=Matrix.utils>.
Author: Dragos Bandur [aut, cre]
Maintainer: Dragos Bandur <dbandur@sympatico.ca>
Diff between akin versions 0.1.4 dated 2026-04-10 and 0.2.0 dated 2026-04-11
DESCRIPTION | 8 +-- MD5 | 48 +++++++++++----------- NEWS.md | 6 ++ R/akin-package.R | 17 +++---- R/common.R | 108 ++++++++++++++++++++++++++++++-------------------- R/findLoc.R | 4 - R/getEncodedVar.R | 37 ++++++++--------- R/modPep.R | 8 +-- R/normalizer.R | 14 ++---- R/oneHotEncoder.R | 22 +++++----- R/seqRead.R | 25 +++++------ R/stratified_sample.R | 45 ++++++++++---------- R/tileD.R | 10 ++-- R/tileHot.R | 8 +-- R/utils.R | 17 +------ man/akin-package.Rd | 17 +++---- man/common.Rd | 63 ++++++++++++++++++----------- man/getEV.Rd | 31 ++++++-------- man/locateMod.Rd | 4 - man/oneHot.Rd | 7 +-- man/score.Rd | 14 ++---- man/splitH.Rd | 13 ++---- man/stratify.Rd | 37 ++++++++--------- man/tileData.Rd | 2 man/tileHot.Rd | 4 - 25 files changed, 297 insertions(+), 272 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-21 0.0.3
2017-06-08 0.0.2
2017-04-14 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-21 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-02 1.1.6
2018-12-17 1.1.5
2018-10-17 1.1.4
2018-09-11 1.1.2
Title: Self-Similarity Test for Normality
Description: Implements the Self-Similarity Test for Normality (SSTN), a new
statistical test designed to assess whether a given sample originates from
a normal distribution. The method exploits the self-similarity property of
the normal characteristic function by iteratively transforming and comparing
standardized empirical characteristic functions. The null distribution of
the test statistic is obtained via Monte Carlo simulation. Details of the
methodology are described in Anarat and Schwender (2026),
"A test for normality based on self-similarity", <doi:10.48550/arXiv.2604.03810>.
Author: Akin Anarat [aut, cre]
Maintainer: Akin Anarat <akin.anarat@hhu.de>
Diff between sstn versions 1.0.0 dated 2025-09-16 and 1.0.1 dated 2026-04-11
DESCRIPTION | 23 +++--- MD5 | 25 ++++-- NAMESPACE | 2 NEWS.md |only R/asymptotic_calibration.R |only R/calibration_data.R |only R/compute_statistics.R |only R/sstn.R | 141 ++++++++++++++----------------------- R/sysdata.rda |only R/utils.R |only build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/Introduction_to_SSTN.Rmd | 15 +-- inst/doc/Introduction_to_SSTN.html | 38 +++------ man/calibration_data.Rd |only man/sstn.Rd | 52 +++---------- vignettes/Introduction_to_SSTN.Rmd | 15 +-- 17 files changed, 126 insertions(+), 187 deletions(-)
Title: Descriptive, Reliability, and Inferential Tables for
Psychometric Scales and Demographic Data
Description: Provides functions to format and summarise already computed outputs from commonly used statistical and psychometric functions into compact, single-row tables and simple graphs, with utilities to export results to CSV, Word, and Excel formats. The package does not implement new statistical methods or estimation procedures; instead, it organises and presents results obtained from existing functions such as psych::describe(), psych::alpha(), stats::t.test(), and gtsummary::tbl_summary() to streamline reporting workflows in clinical and psychological research.
Author: Darshankumar Dharaiya [aut, cre]
Maintainer: Darshankumar Dharaiya <dharaiya.darshan@gmail.com>
Diff between scaledescr versions 0.2.3 dated 2026-03-21 and 0.2.4 dated 2026-04-11
DESCRIPTION | 8 ++-- MD5 | 16 ++++---- NAMESPACE | 15 ++++++++ NEWS.md | 10 +++++ R/make_alpha_table.R | 55 +++++++++++++++-------------- R/make_dataframe_to_output.R | 75 +++++++++++++++++++++++++++++++++------- inst/CITATION | 2 - man/make_alpha_table.Rd | 23 ++++-------- man/make_dataframe_to_output.Rd | 8 +++- 9 files changed, 145 insertions(+), 67 deletions(-)
Title: Tools for Creating Tuning Parameter Values
Description: Many models contain tuning parameters (i.e. parameters that
cannot be directly estimated from the data). These tools can be used
to define objects for creating, simulating, or validating values for
such parameters.
Author: Max Kuhn [aut],
Hannah Frick [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Hannah Frick <hannah@posit.co>
Diff between dials versions 1.4.2 dated 2025-09-04 and 1.4.3 dated 2026-04-11
DESCRIPTION | 8 MD5 | 96 ++++----- NAMESPACE | 14 + NEWS.md | 23 ++ R/aaa_ranges.R | 40 ++- R/aaa_unknown.R | 16 + R/aaa_values.R | 27 +- R/constructors.R | 6 R/dials-package.R | 2 R/encode_unit.R | 13 - R/finalize.R | 30 ++ R/grids.R | 155 +++++++++++++-- R/misc.R | 236 +++++++++++++++++++++-- R/param_ordinal_link.R |only R/param_schedulers.R | 2 R/param_tab_pfn.R |only R/parameters.R | 101 ++++----- R/space_filling.R | 120 +++++++++-- README.md | 2 build/vignette.rds |binary inst/doc/dials.Rmd | 2 inst/doc/dials.html | 2 man/dials-package.Rd | 2 man/finalize.Rd | 2 man/grid_regular.Rd | 6 man/grid_space_filling.Rd | 3 man/ordinal_link.Rd |only man/parameters.Rd | 18 + man/scheduler-param.Rd | 4 man/tab-pfn-param.Rd |only tests/testthat/_snaps/aaa_ranges.md | 34 +++ tests/testthat/_snaps/aaa_unknown.md | 34 +-- tests/testthat/_snaps/aaa_values.md | 99 +++++++++ tests/testthat/_snaps/constructors.md | 43 +++- tests/testthat/_snaps/encode_unit.md | 36 ++- tests/testthat/_snaps/finalize.md | 68 ++++++ tests/testthat/_snaps/grids.md | 334 ++++++++++++++++++++++++++++++++- tests/testthat/_snaps/misc.md | 208 +++++++++++++++++++- tests/testthat/_snaps/parameters.md | 40 +++ tests/testthat/_snaps/space_filling.md | 178 +++++++++++++++++ tests/testthat/test-aaa_ranges.R | 13 + tests/testthat/test-aaa_values.R | 26 ++ tests/testthat/test-constructors.R | 29 ++ tests/testthat/test-encode_unit.R | 14 + tests/testthat/test-finalize.R | 15 + tests/testthat/test-grids.R | 117 ++++++++++- tests/testthat/test-misc.R | 89 ++++++++ tests/testthat/test-parameters.R | 22 ++ tests/testthat/test-params.R | 80 +++++-- tests/testthat/test-space_filling.R | 84 ++++++++ vignettes/dials.Rmd | 2 51 files changed, 2163 insertions(+), 332 deletions(-)
Title: Access Geographic Data
Description: Functions for downloading of geographic data for use in spatial analysis and mapping. The package facilitates access to climate, crops, elevation, land use, soil, species occurrence, accessibility, administrative boundaries and other data.
Author: Robert J. Hijmans [cre, aut] ,
Marcia Barbosa [ctb] ,
Aniruddha Ghosh [ctb],
Alex Mandel [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between geodata versions 0.6-6 dated 2025-09-29 and 0.6-9 dated 2026-04-11
DESCRIPTION | 9 MD5 | 38 +- R/download.R | 2 R/gadm.R | 2 R/occurrence.R | 10 R/path.R | 45 ++- R/soil_afsis.R | 29 +- R/soil_grids.R | 9 R/soil_isda.R | 2 R/uri_helpers.R | 610 ++++++++++++++++++++++++------------------------ R/worldclim.R | 103 ++++++-- build/partial.rdb |binary man/cmip6.Rd | 4 man/cropland.Rd | 2 man/geodata_path.Rd | 9 man/soil_af.Rd | 10 man/soil_af_elements.Rd | 2 man/soil_af_isda.Rd | 4 man/soil_grids.Rd | 4 man/sp_occurrence.Rd | 18 - 20 files changed, 505 insertions(+), 407 deletions(-)
Title: Advanced Framework for Sap Flow Data Post-Process
Description: Provides a flexible framework for post-processing thermal
dissipation sap flow data using statistical methods and machine learning.
This framework includes anomaly correction, outlier removal, gap-filling,
trend removal, signal damping correction, and sap flux density calculation.
The functions in this package can also apply to other time series with
various artifacts.
Author: Yoshiaki Hata [aut, cre, cph]
Maintainer: Yoshiaki Hata <yoshiakihata0806@gmail.com>
Diff between fluxfixer versions 1.0.0 dated 2026-02-02 and 1.1.0 dated 2026-04-11
DESCRIPTION | 6 - MD5 | 61 +++++------ NAMESPACE | 1 NEWS.md | 34 +++++- R/calc_dtmax.R | 8 - R/remove_statistical_outlier.R | 31 ++++- R/run_fluxfixer.R | 119 +++++++++++++++++++---- R/utils.R | 117 ++++++++++++++++++++++ inst/doc/fluxfixer.Rmd | 14 +- inst/doc/fluxfixer.html | 56 ++++++---- man/calc_dtmax.Rd | 2 man/calc_dtmax_dr.Rd | 6 - man/calc_dtmax_ed.Rd | 2 man/calc_dtmax_mw.Rd | 6 - man/calc_dtmax_mw_dr.Rd | 6 - man/calc_dtmax_pd.Rd | 2 man/calc_dtmax_pd_ed.Rd | 2 man/calc_dtmax_sp.Rd | 2 man/calc_ref_stats.Rd | 4 man/calc_sw_in_toa.Rd | 2 man/check_short_attenuation.Rd | 2 man/filter_highfreq_noise.Rd | 4 man/get_interval.Rd | 2 man/interpret_qc.Rd |only man/modify_short_drift.Rd | 6 - man/remove_manually.Rd | 4 man/remove_zscore_outlier.Rd | 6 - man/run_fluxfixer.Rd | 52 ++++++++-- tests/testthat/test-remove_statistical_outlier.R | 50 ++++++--- tests/testthat/test-run_fluxfixer.R | 11 ++ tests/testthat/test-utils.R | 42 ++++++-- vignettes/fluxfixer.Rmd | 14 +- 32 files changed, 506 insertions(+), 168 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-03-12 1.0.1
2024-07-14 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-08-21 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-30 1.0.4
2021-03-22 1.0.3
2020-04-07 1.0.2
2019-09-17 1.0.1
2019-04-04 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-07 0.2.1
2020-09-04 0.2.0
2020-06-09 0.1.1
2020-05-11 0.1.0
2020-05-08 0.0.2
2020-03-31 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-29 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-10-11 1.4.0
2025-07-20 1.1.3
2025-07-18 1.0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-12-20 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-27 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-24 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-23 3.2.0
2023-08-22 3.1.0
2022-08-10 3.0.1
2020-10-28 3.0.0
2020-08-26 2.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-01-09 1.0.0
2024-06-13 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-09-16 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-21 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-10 1.0.0
Title: Text Extraction, Rendering and Converting of PDF Documents
Description: Utilities based on 'libpoppler' <https://poppler.freedesktop.org> for extracting
text, fonts, attachments and metadata from a PDF file. Also supports high quality rendering
of PDF documents into PNG, JPEG, TIFF format, or into raw bitmap vectors for further
processing in R.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between pdftools versions 3.7.0 dated 2026-01-30 and 3.8.0 dated 2026-04-11
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 4 ++++ src/bindings.cpp | 1 + 4 files changed, 11 insertions(+), 6 deletions(-)
Title: Database Interface and 'MySQL' Driver for R
Description: Legacy 'DBI' interface to 'MySQL' / 'MariaDB' based on old code
ported from S-PLUS. A modern 'MySQL' client written in 'C++' is available
from the 'RMariaDB' package.
Author: Jeroen Ooms [aut, cre] ,
David James [aut],
Saikat DebRoy [aut],
Hadley Wickham [aut],
Jeffrey Horner [aut],
RStudio [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between RMySQL versions 0.11.2 dated 2026-03-02 and 0.11.3 dated 2026-04-11
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 8 +++++++- src/connection.c | 6 ++++-- 4 files changed, 17 insertions(+), 9 deletions(-)
Title: Knowledge Space Theory Input/Output
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kstIO' package
provides basic functionalities to read and write KST data from/to
files to be used together with the 'kst', 'kstMatrix', 'pks', or
'DAKS' packages.
Author: Cord Hockemeyer [aut, cre]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kstIO versions 0.5-0 dated 2026-03-08 and 0.5-1 dated 2026-04-11
Changelog | 5 +++++ DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++++++---------- R/write_kbase.R | 25 ++++++++++++++----------- R/write_kfamset.R | 26 +++++++++++++++----------- R/write_kspace.R | 21 +++++++++++++-------- R/write_kstructure.R | 20 +++++++++++++------- build |only inst |only man/write_kbase.Rd | 4 +++- man/write_kfamset.Rd | 4 +++- man/write_kspace.Rd | 7 ++++++- man/write_kstructure.Rd | 7 ++++++- vignettes |only 14 files changed, 100 insertions(+), 55 deletions(-)
Title: Fast and Efficient Processing of PAM Data
Description: Processing Chlorophyll Fluorescence & P700 Absorbance data. Four models are provided for the regression of Pi curves, which can be compared with each other in order to select the most suitable model for the data set. Control plots ensure the successful verification of each regression. Bundled output of alpha, ETRmax, Ik etc. enables fast and reliable further processing of the data.
Author: Julien Boehm [cre, aut] ,
Philipp Schrag [aut]
Maintainer: Julien Boehm <julien.boehm@uni-rostock.de>
Diff between pam versions 2.0.2 dated 2026-02-23 and 2.1.0 dated 2026-04-11
DESCRIPTION | 8 +- MD5 | 54 ++++++++--------- R/eilers_peeters.R | 2 R/platt.R | 4 - R/util.R | 4 - R/validation.R | 6 - R/vollenweider.R | 12 +-- R/walsby.R | 4 - build/partial.rdb |binary inst/CITATION | 4 - man/eilers_peeters_modified.Rd | 2 man/platt_modified.Rd | 2 man/vollenweider_generate_regression_ETR_I.Rd | 4 - man/vollenweider_generate_regression_ETR_II.Rd | 4 - man/vollenweider_modified.Rd | 2 man/walsby_modified.Rd | 2 tests/testthat/helper-os-detection.R | 11 --- tests/testthat/test-eilers_peeters_etr_I.R | 2 tests/testthat/test-eilers_peeters_etr_II.R | 2 tests/testthat/test-eilers_peeters_junior_pam_etr_II.R | 2 tests/testthat/test-platt_etr_I.R | 2 tests/testthat/test-platt_etr_II.R | 2 tests/testthat/test-universal_data_etr_I.R | 8 +- tests/testthat/test-vollenweider_etr_I.R | 2 tests/testthat/test-vollenweider_etr_II.R | 2 tests/testthat/test-walsby_etr_I.R | 2 tests/testthat/test-walsby_etr_II.R | 2 tests/testthat/test-write_model_result_csv.R | 4 - 28 files changed, 73 insertions(+), 82 deletions(-)
Title: Handling and Analysing EQ-5d Data
Description: The EQ-5D is a widely-used standarized instrument for measuring Health Related Quality Of Life (HRQOL),
developed by the EuroQol group <https://euroqol.org/>. It assesses five dimensions; mobility, self-care,
usual activities, pain/discomfort, and anxiety/depression, using either a three-level (EQ-5D-3L) or five-level (EQ-5D-5L) scale.
Scores from these dimensions are commonly converted into a single utility index using country-specific value sets,
which are critical in clinical and economic evaluations of healthcare and in population health surveys.
The eq5dsuite package enables users to calculate utility index values for the EQ-5D instruments,
including crosswalk utilities using the original crosswalk developed by van Hout et al. (2012) <doi:10.1016/j.jval.2012.02.008>
(mapping EQ-5D-5L responses to EQ-5D-3L index values), or the recently developed reverse crosswalk
by van Hout et al. (2021) <doi:10.1016/j.jval.2021.03.009> (mapping EQ-5D-3L responses
to EQ-5D-5L in [...truncated...]
Author: Kim Rand [aut, cre] ,
Oliver Rivero-Arias [aut] ,
Iryna Schlackow [aut] ,
Anabel Estevez-Carrillo [aut]
Maintainer: Kim Rand <krand@mathsinhealth.com>
Diff between eq5dsuite versions 1.0.2 dated 2026-03-24 and 1.0.3 dated 2026-04-11
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ R/EQ_functions.R | 2 +- R/sysdata.rda |binary inst/shiny/modules/mod_data.R | 4 ++-- man/eqvs_display.Rd | 2 +- 7 files changed, 19 insertions(+), 13 deletions(-)
Title: Semi-Automatic Grading of R and Rmd Scripts
Description: A customisable set of tools for assessing and grading
R or R-markdown scripts from students. It allows for checking correctness
of code output, runtime statistics and static code analysis. The latter
feature is made possible by representing R expressions using a tree
structure.
Author: Vik Gopal [aut],
Agrawal Naman [aut, cre],
Yuting Huang [ctb],
Samuel Seah [aut],
Viknesh Jeya Kumar [aut],
Gabriel Ang [aut],
Ruofan Liu [ctb],
National University of Singapore [cph]
Maintainer: Agrawal Naman <naman.a@nus.edu.sg>
Diff between autoharp versions 0.3.1 dated 2026-04-10 and 0.3.2 dated 2026-04-11
DESCRIPTION | 6 - MD5 | 30 ++++---- NEWS | 3 NEWS.md | 13 ++- README.md | 17 ++-- inst/doc/bg_concepts.Rmd | 4 - inst/doc/bg_concepts.html | 22 ++--- inst/doc/getting-started.R | 50 ++++--------- inst/doc/getting-started.Rmd | 100 +++++++++++++-------------- inst/doc/getting-started.html | 151 ++++++++++++++++++----------------------- inst/doc/shiny_similarity.Rmd | 6 - inst/doc/shiny_similarity.html | 40 +++++----- vignettes/bg_concepts.Rmd | 4 - vignettes/getting-started.Rmd | 100 +++++++++++++-------------- vignettes/references.bib | 2 vignettes/shiny_similarity.Rmd | 6 - 16 files changed, 262 insertions(+), 292 deletions(-)
Title: Generate Comment Boxes with Custom Alignment
Description: Provides a function to generate comment boxes framed with '#'
characters, with configurable width and text alignment (left, center,
or right). Useful for formatting scripts and improving code readability.
Author: Gregoire Muller [aut, cre]
Maintainer: Gregoire Muller <muller.gregoire@protonmail.com>
Diff between easyComment versions 2.0.0 dated 2026-04-03 and 2.1.0 dated 2026-04-11
DESCRIPTION | 13 - MD5 | 9 - R/comment_box.R | 335 +++++++++++++++++++++++--------------- README.md |only man/generate_comment_box.Rd | 132 +++++++++----- tests/testthat/test-comment_box.R | 185 +++++++++++++++++--- 6 files changed, 455 insertions(+), 219 deletions(-)
Title: Partial Profile Score Feature Selection in High-Dimensional
Generalized Linear Interaction Models
Description: This is an implementation of the partial profile score feature
selection (PPSFS) approach to generalized linear (interaction) models.
The PPSFS is highly scalable even for ultra-high-dimensional feature space.
See the paper by Xu, Luo and Chen (2022) <doi:10.4310/21-SII706>.
Author: Zengchao Xu [aut, cre],
Shan Luo [aut],
Zehua Chen [aut]
Maintainer: Zengchao Xu <zengc.xu@aliyun.com>
Diff between PPSFS versions 0.1.1 dated 2025-07-03 and 0.1.3 dated 2026-04-11
DESCRIPTION | 13 ++++++------- MD5 | 16 +++++++++------- NAMESPACE | 2 ++ NEWS.md | 13 +++++++++++++ R/PPSFS-package.R | 27 ++++++++++++++------------- R/ppsfs.R | 5 ++--- R/ppsfs.fit.R |only man/PPS-method.Rd | 5 ++--- man/PPSFS-package.Rd | 2 +- man/ppsfs.fit.Rd |only 10 files changed, 49 insertions(+), 34 deletions(-)
Title: Econometric Tools for Performance and Risk Analysis
Description: Collection of econometric functions for performance and risk
analysis. In addition to standard risk and performance metrics, this
package aims to aid practitioners and researchers in utilizing the latest
research in analysis of non-normal return streams. In general, it is most
tested on return (rather than price) data on a regular scale, but most
functions will work with irregular return data as well, and increasing
numbers of functions will work with P&L or price data where possible.
Author: Brian G. Peterson [cre, aut, cph],
Peter Carl [aut, cph],
Kris Boudt [ctb, cph],
Ross Bennett [ctb],
Joshua Ulrich [ctb],
Eric Zivot [ctb],
Dries Cornilly [ctb],
Eric Hung [ctb],
Matthieu Lestel [ctb],
Kyle Balkissoon [ctb],
Diethelm Wuertz [ctb],
An [...truncated...]
Maintainer: Brian G. Peterson <brian@braverock.com>
Diff between PerformanceAnalytics versions 2.0.8 dated 2024-12-09 and 2.1.0 dated 2026-04-11
PerformanceAnalytics-2.0.8/PerformanceAnalytics/inst/tinytest |only PerformanceAnalytics-2.0.8/PerformanceAnalytics/tests/tinytest.R |only PerformanceAnalytics-2.1.0/PerformanceAnalytics/DESCRIPTION | 43 PerformanceAnalytics-2.1.0/PerformanceAnalytics/MD5 | 577 +++++--- PerformanceAnalytics-2.1.0/PerformanceAnalytics/NAMESPACE | 9 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/ActivePremium.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/AdjustedSharpeRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/AppraisalRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/BernadoLedoitratio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/BurkeRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CAPM.alpha.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CAPM.beta.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CAPM.epsilon.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CAPM.jensenAlpha.R | 110 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CAPM.utils.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CDAR.alpha.R | 111 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CalmarRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/CoMoments.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/DRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/DownsideDeviation.R | 92 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/DownsideFrequency.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/DrawdownPeak.R | 59 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Drawdowns.R | 43 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/ES.R | 606 +++++--- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/FamaBeta.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Frequency.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/HerfindahlIndex.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/HurstIndex.R | 89 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/InformationRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Kappa.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/KellyRatio.R | 8 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Level.calculate.R | 386 +++-- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/M2Sortino.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/MM.NCE.R | 439 +++--- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/MSquared.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/MSquaredExcess.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/MarketTiming.R | 6 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/MartinRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/MeanAbsoluteDeviation.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/MinTRL.R | 5 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/MultivariateMoments.R | 6 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/NetSelectivity.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Omega.R | 263 ++- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/OmegaExcessReturn.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/OmegaSharpeRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/PainIndex.R | 76 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/PainRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/PerformanceAnalytics-package.R | 332 ++-- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/PortfolioRisk.R | 4 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/ProbSharpeRatio.R | 197 +- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/ProspectRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.Geltner.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.annualized.R | 116 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.calculate.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.clean.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.convert.R | 199 ++ PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.cumulative.R | 62 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.excess.R | 92 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.locScaleRob.R | 8 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.portfolio.R | 676 +++++----- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.read.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Return.relative.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/Selectivity.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/SemiDeviation.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/SharpeRatio.R | 349 +++-- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/SharpeRatio.annualized.R | 87 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/SkewnessKurtosisRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/SmoothingIndex.R | 205 +-- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/SortinoRatio.R | 117 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/SpecificRisk.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/StdDev.R | 249 ++- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/StdDev.annualized.R | 119 + PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/SystematicRisk.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/TotalRisk.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/TrackingError.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/TreynorRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/UlcerIndex.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/UpDownRatios.R | 160 +- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/UpsideFrequency.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/UpsidePotentialRatio.R | 97 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/UpsideRisk.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/VaR.Marginal.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/VaR.R | 563 ++++---- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/VaR.backtest.R |only PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/VaR.gpd.R |only PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/VaR.lognormal.R |only PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/VaR.montecarlo.R |only PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/VolatilitySkewness.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/apply.fromstart.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/apply.rolling.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.ACF.R | 4 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.ACFplus.R | 4 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.Bar.R | 4 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.BarVaR.R | 617 ++++----- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.Boxplot.R | 231 +-- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.CaptureRatios.R | 4 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.Correlation.R | 144 +- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.CumReturns.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.Drawdown.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.ECDF.R | 4 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.Events.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.Histogram.R | 4 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.QQPlot.R | 4 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.Regression.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.RelativePerformance.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.RiskReturnScatter.R | 200 +- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.RollingCorrelation.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.RollingMean.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.RollingPerformance.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.RollingQuantileRegression.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.RollingRegression.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.Scatter.R | 4 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.SnailTrail.R | 230 +-- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.StackedBar.R | 384 ++--- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.TimeSeries.R | 339 ++--- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.TimeSeries.base.R | 221 +-- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.TimeSeries.builtin.R | 270 ++- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.TimeSeries.dygraph.R | 18 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.TimeSeries.ggplot2.R | 157 +- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.TimeSeries.googlevis.R | 37 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.TimeSeries.plotly.R | 54 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/chart.VaRSensitivity.R | 29 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/charts.Bar.R | 51 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/charts.BarVaR.R | 4 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/charts.PerformanceSummary.R | 448 +++--- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/charts.RollingPerformance.R | 4 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/charts.RollingRegression.R | 4 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/charts.TimeSeries.R | 57 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/checkData.R | 196 +- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/checkSeedValue.R | 59 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/findDrawdowns.R | 140 +- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/kurtosis.R | 159 +- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/legend.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/lpm.R | 185 +- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/maxDrawdown.R | 295 ++-- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/mean.utils.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/na.skip.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/replaceTabs.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/skewness.R | 144 +- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/sortDrawdowns.R | 54 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/table.AnnualizedReturns.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/table.Arbitrary.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/table.Autocorrelation.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/table.CAPM.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/table.CalendarReturns.R | 19 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/table.CaptureRatios.R | 89 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/table.Correlation.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/table.Distributions.R | 119 + PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/table.DownsideRisk.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/table.DownsideRiskRatio.R | 117 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/table.Drawdowns.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/table.DrawdownsRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/table.HigherMoments.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/table.InformationRatio.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/table.MonthlyReturns.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/table.RollingPeriods.R | 224 +-- PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/table.SpecificRisk.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/table.UpDownRatios.R | 61 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/table.Variability.R | 119 + PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/textplot.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/to.period.contributions.R | 6 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/zerofill.R | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/R/zzz.R | 20 PerformanceAnalytics-2.1.0/PerformanceAnalytics/README.md | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/build/vignette.rds |binary PerformanceAnalytics-2.1.0/PerformanceAnalytics/inst/doc/EstimationComoments.pdf |binary PerformanceAnalytics-2.1.0/PerformanceAnalytics/inst/doc/PA-charts.pdf |binary PerformanceAnalytics-2.1.0/PerformanceAnalytics/inst/doc/PA_StandardErrors.pdf |binary PerformanceAnalytics-2.1.0/PerformanceAnalytics/inst/doc/PerformanceAnalyticsChartsPresentation-Meielisalp-2007.Rnw | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/inst/doc/PerformanceAnalyticsChartsPresentation-Meielisalp-2007.pdf |binary PerformanceAnalytics-2.1.0/PerformanceAnalytics/inst/doc/PerformanceAnalyticsPresentation-UseR-2007.Rnw | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/inst/doc/PerformanceAnalyticsPresentation-UseR-2007.pdf |binary PerformanceAnalytics-2.1.0/PerformanceAnalytics/inst/doc/portfolio_returns.R | 4 PerformanceAnalytics-2.1.0/PerformanceAnalytics/inst/doc/portfolio_returns.Rnw | 12 PerformanceAnalytics-2.1.0/PerformanceAnalytics/inst/doc/portfolio_returns.pdf |binary PerformanceAnalytics-2.1.0/PerformanceAnalytics/inst/doc/textplotPresentation-CRUG-2011.pdf |binary PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/CAPM.jensenAlpha.Rd | 26 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/CDD.Rd | 24 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/CDaR.alpha.Rd | 14 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/DownsideDeviation.Rd | 4 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/DrawdownPeak.Rd | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/ES.Rd | 106 + PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/HurstIndex.Rd | 22 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/KellyRatio.Rd | 4 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/Level.calculate.Rd | 63 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/NCE.Rd | 35 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/Omega.Rd | 29 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/PainIndex.Rd | 20 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/PerformanceAnalytics-package.Rd | 72 - PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/ProbSharpeRatio.Rd | 34 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/Return.annualized.Rd | 10 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/Return.convert.Rd | 4 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/Return.cumulative.Rd | 14 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/Return.excess.Rd | 8 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/Return.locScaleRob.Rd | 6 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/Return.portfolio.Rd | 143 +- PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/SharpeRatio.Rd | 38 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/SharpeRatio.annualized.Rd | 16 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/SmoothingIndex.Rd | 9 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/SortinoRatio.Rd | 4 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/StdDev.Rd | 27 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/StdDev.annualized.Rd | 17 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/UpDownRatios.Rd | 20 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/UpsidePotentialRatio.Rd | 4 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/VaR.Rd | 110 + PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/VaR.backtest.Rd |only PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/chart.Bar.Rd | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/chart.Boxplot.Rd | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/chart.Correlation.Rd | 9 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/chart.RiskReturnScatter.Rd | 7 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/chart.SnailTrail.Rd | 14 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/chart.StackedBar.Rd | 8 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/chart.TimeSeries.Rd | 133 + PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/charts.PerformanceSummary.Rd | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/checkData.Rd | 16 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/edhec.Rd | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/findDrawdowns.Rd | 20 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/kurtosis.Rd | 24 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/lpm.Rd | 6 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/managers.Rd | 8 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/maxDrawdown.Rd | 6 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/skewness.Rd | 16 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/sortDrawdowns.Rd | 16 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/table.CalendarReturns.Rd | 5 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/table.CaptureRatios.Rd | 27 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/table.Distributions.Rd | 20 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/table.DownsideRiskRatio.Rd | 22 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/table.RollingPeriods.Rd | 43 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/table.Variability.Rd | 20 PerformanceAnalytics-2.1.0/PerformanceAnalytics/man/to.period.contributions.Rd | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/tests/testthat |only PerformanceAnalytics-2.1.0/PerformanceAnalytics/tests/testthat.R |only PerformanceAnalytics-2.1.0/PerformanceAnalytics/vignettes/PerformanceAnalyticsChartsPresentation-Meielisalp-2007.Rnw | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/vignettes/PerformanceAnalyticsPresentation-UseR-2007.Rnw | 2 PerformanceAnalytics-2.1.0/PerformanceAnalytics/vignettes/portfolio_returns.Rnw | 12 235 files changed, 7549 insertions(+), 6053 deletions(-)
More information about PerformanceAnalytics at CRAN
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Title: Derivative-Based Optimization with User-Defined Convergence
Criteria
Description: Provides a derivative-based optimization framework that allows users
to combine eight convergence criteria. Unlike standard optimization functions, this package includes a
built-in mechanism to verify the positive definiteness of the Hessian matrix
at the point of convergence. This additional check helps prevent the solver
from falsely identifying non-optimal solutions, such as saddle points, as
valid minima.
Author: Eunseong Cho [aut, cre]
Maintainer: Eunseong Cho <bene@kw.ac.kr>
This is a re-admission after prior archival of version 0.1.0 dated 2026-02-07
Diff between optimflex versions 0.1.0 dated 2026-02-07 and 0.1.6 dated 2026-04-11
optimflex-0.1.0/optimflex/R/backup |only optimflex-0.1.0/optimflex/R/dfp.R |only optimflex-0.1.0/optimflex/R/unused_functions |only optimflex-0.1.0/optimflex/man/dfp.Rd |only optimflex-0.1.6/optimflex/DESCRIPTION | 8 optimflex-0.1.6/optimflex/MD5 | 58 optimflex-0.1.6/optimflex/NAMESPACE | 1 optimflex-0.1.6/optimflex/NEWS.md | 32 optimflex-0.1.6/optimflex/R/bfgs.R | 570 ++++---- optimflex-0.1.6/optimflex/R/dogleg.R | 512 ++++--- optimflex-0.1.6/optimflex/R/double_dogleg.R | 642 +++++----- optimflex-0.1.6/optimflex/R/gauss_newton.R | 536 ++++---- optimflex-0.1.6/optimflex/R/l_bfgs_b.R | 535 ++++---- optimflex-0.1.6/optimflex/R/modified_newton.R | 442 +++--- optimflex-0.1.6/optimflex/R/newton_raphson.R | 432 +++--- optimflex-0.1.6/optimflex/inst/doc/Introduction-to-optimflex.R | 4 optimflex-0.1.6/optimflex/inst/doc/Introduction-to-optimflex.Rmd | 4 optimflex-0.1.6/optimflex/inst/doc/Introduction-to-optimflex.html | 31 optimflex-0.1.6/optimflex/man/bfgs.Rd | 5 optimflex-0.1.6/optimflex/man/dogleg.Rd | 5 optimflex-0.1.6/optimflex/man/double_dogleg.Rd | 5 optimflex-0.1.6/optimflex/man/gauss_newton.Rd | 5 optimflex-0.1.6/optimflex/man/l_bfgs_b.Rd | 5 optimflex-0.1.6/optimflex/man/modified_newton.Rd | 5 optimflex-0.1.6/optimflex/man/newton_raphson.Rd | 5 optimflex-0.1.6/optimflex/tests/testthat/test-rosenbrock.R | 1 optimflex-0.1.6/optimflex/vignettes/Introduction-to-optimflex.Rmd | 4 27 files changed, 1996 insertions(+), 1851 deletions(-)
Title: The Multiplicative Multinomial Distribution
Description: Various utilities for the Multiplicative Multinomial distribution.
Author: Robin K. S. Hankin [aut, cre],
P. M. E. Altham [aut]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between MM versions 1.6-8 dated 2024-05-16 and 1.7-0 dated 2026-04-11
MM-1.6-8/MM/build/MM.pdf |only MM-1.6-8/MM/build/stage23.rdb |only MM-1.7-0/MM/DESCRIPTION | 19 +++++++++++++------ MM-1.7-0/MM/MD5 | 40 +++++++++++++++++++--------------------- MM-1.7-0/MM/NAMESPACE | 1 - MM-1.7-0/MM/build/partial.rdb |binary MM-1.7-0/MM/build/vignette.rds |binary MM-1.7-0/MM/data/danaher.rda |binary MM-1.7-0/MM/data/pollen.rda |binary MM-1.7-0/MM/data/powell.rda |binary MM-1.7-0/MM/data/skellam.rda |binary MM-1.7-0/MM/data/sweets.rda |binary MM-1.7-0/MM/data/voting.rda |binary MM-1.7-0/MM/data/wilson.rda |binary MM-1.7-0/MM/inst/doc/MM.pdf |binary MM-1.7-0/MM/man/MB.Rd | 30 +++++++++++++++--------------- MM-1.7-0/MM/man/MM.Rd | 18 +++++++++--------- MM-1.7-0/MM/man/multinomial.Rd | 6 +++--- MM-1.7-0/MM/man/paras.Rd | 6 +++--- MM-1.7-0/MM/man/pollen.Rd | 4 ++-- MM-1.7-0/MM/man/suffstats.Rd | 4 ++-- MM-1.7-0/MM/man/sweets.Rd | 8 ++++---- 22 files changed, 70 insertions(+), 66 deletions(-)
Title: Calibration, Validation, and Simulation of TKTD Models
Description: Eases the use of ecotoxicological effect models. Can simulate
common toxicokinetic-toxicodynamic (TK/TD) models such as
General Unified Threshold models of Survival (GUTS) and Lemna. It can
derive effects and effect profiles (EPx) from scenarios. It supports the
use of 'tidyr' workflows employing the pipe symbol. Time-consuming
tasks can be parallelized.
Author: Nils Kehrein [aut, cre],
Dirk Nickisch [aut],
Peter Vermeiren [aut],
Torben Wittwer [ctb],
Johannes Witt [ctb],
Andre Gergs [ctb]
Maintainer: Nils Kehrein <nils.kehrein@gmail.com>
Diff between cvasi versions 1.5.0 dated 2025-09-11 and 1.5.1 dated 2026-04-11
cvasi-1.5.0/cvasi/inst/fit_log.Rmd |only cvasi-1.5.0/cvasi/inst/fit_log.html |only cvasi-1.5.1/cvasi/DESCRIPTION | 8 cvasi-1.5.1/cvasi/MD5 | 46 +-- cvasi-1.5.1/cvasi/NEWS.md | 8 cvasi-1.5.1/cvasi/R/calibrate.R | 6 cvasi-1.5.1/cvasi/R/fit_growth.R | 5 cvasi-1.5.1/cvasi/R/fit_tktd.R | 8 cvasi-1.5.1/cvasi/R/globals.R | 126 ++++---- cvasi-1.5.1/cvasi/R/model-guts.R | 4 cvasi-1.5.1/cvasi/R/set_times.R | 4 cvasi-1.5.1/cvasi/R/simulate.R | 3 cvasi-1.5.1/cvasi/build/partial.rdb |binary cvasi-1.5.1/cvasi/build/vignette.rds |binary cvasi-1.5.1/cvasi/data/schmitt2013.rda |binary cvasi-1.5.1/cvasi/inst/doc/cvasi-1-manual.R | 12 cvasi-1.5.1/cvasi/inst/doc/cvasi-1-manual.html | 1 cvasi-1.5.1/cvasi/inst/doc/cvasi-2-howto.R | 28 - cvasi-1.5.1/cvasi/inst/doc/cvasi-2-howto.html | 205 +++++++------- cvasi-1.5.1/cvasi/man/GUTS_IT.Rd | 2 cvasi-1.5.1/cvasi/man/GUTS_SD.Rd | 2 cvasi-1.5.1/cvasi/man/fit_growth.Rd | 5 cvasi-1.5.1/cvasi/man/fit_tktd.Rd | 8 cvasi-1.5.1/cvasi/tests/testthat/test-simulate_scenario.R | 18 + cvasi-1.5.1/cvasi/tests/testthat/test-solver.R | 2 25 files changed, 268 insertions(+), 233 deletions(-)
Title: Vector Helpers
Description: Defines new notions of prototype and size that are used to
provide tools for consistent and well-founded type-coercion and
size-recycling, and are in turn connected to ideas of type- and
size-stability useful for analysing function interfaces.
Author: Hadley Wickham [aut],
Lionel Henry [aut],
Davis Vaughan [aut, cre],
data.table team [cph] and
their contribution to R's order),
Posit Software, PBC [cph, fnd]
Maintainer: Davis Vaughan <davis@posit.co>
Diff between vctrs versions 0.7.2 dated 2026-03-21 and 0.7.3 dated 2026-04-11
DESCRIPTION | 7 ++++--- MD5 | 26 +++++++++++++------------- NEWS.md | 6 ++++++ build/vignette.rds |binary inst/doc/pillar.html | 47 ++++++++++++++++++++++++----------------------- inst/doc/s3-vector.html | 21 +++++++++++---------- inst/doc/stability.html | 6 +++--- inst/doc/type-size.html | 9 +++++---- src/rlang/env-binding.c | 13 +++++++++---- src/rlang/env.c | 14 ++++++-------- src/rlang/globals.c | 1 - src/rlang/globals.h | 1 - src/rlang/rlang-types.h | 2 +- src/version.c | 2 +- 14 files changed, 83 insertions(+), 72 deletions(-)
Title: Tensors and Neural Networks with 'GPU' Acceleration
Description: Provides functionality to define and train neural networks similar to
'PyTorch' by Paszke et al (2019) <doi:10.48550/arXiv.1912.01703> but written entirely in R
using the 'libtorch' library. Also supports low-level tensor operations and
'GPU' acceleration.
Author: Tomasz Kalinowski [ctb, cre],
Daniel Falbel [aut, cph],
Javier Luraschi [aut],
Dmitriy Selivanov [ctb],
Athos Damiani [ctb],
Christophe Regouby [ctb],
Krzysztof Joachimiak [ctb],
Hamada S. Badr [ctb],
Sebastian Fischer [ctb],
Maximilian Pichler [ctb] [...truncated...]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>
Diff between torch versions 0.16.3 dated 2025-11-02 and 0.17.0 dated 2026-04-11
torch-0.16.3/torch/inst/po/fr/LC_MESSAGES/torch.mo |only torch-0.16.3/torch/vignettes/model.pt |only torch-0.16.3/torch/vignettes/tensor.pt |only torch-0.17.0/torch/DESCRIPTION | 14 torch-0.17.0/torch/MD5 | 122 - torch-0.17.0/torch/NAMESPACE | 9 torch-0.17.0/torch/NEWS.md | 30 torch-0.17.0/torch/R/RcppExports.R | 148 + torch-0.17.0/torch/R/conditions.R | 15 torch-0.17.0/torch/R/dtype.R | 13 torch-0.17.0/torch/R/gen-method.R | 2 torch-0.17.0/torch/R/gen-namespace-docs.R | 137 + torch-0.17.0/torch/R/gen-namespace-examples.R | 21 torch-0.17.0/torch/R/gen-namespace.R | 275 +- torch-0.17.0/torch/R/ignite.R | 6 torch-0.17.0/torch/R/install.R | 964 +++++++++- torch-0.17.0/torch/R/lantern_load.R | 31 torch-0.17.0/torch/R/operators.R | 8 torch-0.17.0/torch/R/tensor.R | 28 torch-0.17.0/torch/R/utils.R | 11 torch-0.17.0/torch/R/wrapers.R | 25 torch-0.17.0/torch/README.md | 1 torch-0.17.0/torch/build/partial.rdb |binary torch-0.17.0/torch/build/vignette.rds |binary torch-0.17.0/torch/inst/doc/installation.Rmd | 64 torch-0.17.0/torch/inst/doc/installation.html | 81 torch-0.17.0/torch/inst/include/lantern/lantern.h | 114 - torch-0.17.0/torch/inst/include/torch.h | 11 torch-0.17.0/torch/inst/po/fr/LC_MESSAGES/R-torch.mo |binary torch-0.17.0/torch/man/install_torch_sitrep.Rd |only torch-0.17.0/torch/man/torch_addmm.Rd | 4 torch-0.17.0/torch/man/torch_baddbmm.Rd | 4 torch-0.17.0/torch/man/torch_bmm.Rd | 4 torch-0.17.0/torch/man/torch_dtype.Rd | 6 torch-0.17.0/torch/man/torch_ldexp.Rd |only torch-0.17.0/torch/man/torch_mm.Rd | 4 torch-0.17.0/torch/man/torch_scaled_dot_product_attention.Rd |only torch-0.17.0/torch/man/torch_sparse_sampled_addmm.Rd |only torch-0.17.0/torch/po/R-fr.po | 283 +- torch-0.17.0/torch/po/R-torch.pot | 236 +- torch-0.17.0/torch/po/fr.po | 6 torch-0.17.0/torch/po/torch.pot | 4 torch-0.17.0/torch/src/Makevars.in | 2 torch-0.17.0/torch/src/RcppExports.cpp | 474 +++- torch-0.17.0/torch/src/autograd.cpp | 18 torch-0.17.0/torch/src/codegen.cpp | 19 torch-0.17.0/torch/src/device.cpp | 1 torch-0.17.0/torch/src/dtype.cpp | 10 torch-0.17.0/torch/src/gen-namespace.cpp | 167 + torch-0.17.0/torch/src/indexing.cpp | 13 torch-0.17.0/torch/src/lantern.cpp | 28 torch-0.17.0/torch/src/tensor.cpp | 5 torch-0.17.0/torch/src/torch_api.cpp | 4 torch-0.17.0/torch/src/trace.cpp | 11 torch-0.17.0/torch/tests/testthat/test-dtype.R | 28 torch-0.17.0/torch/tests/testthat/test-gen-namespace.R | 55 torch-0.17.0/torch/tests/testthat/test-nn.R | 26 torch-0.17.0/torch/tests/testthat/test-operators.R | 34 torch-0.17.0/torch/tests/testthat/test-tensor.R | 103 + torch-0.17.0/torch/tests/testthat/test-utils-data.R | 22 torch-0.17.0/torch/tests/testthat/tracedmodule.pt |binary torch-0.17.0/torch/tools/renamelib.R | 2 torch-0.17.0/torch/tools/torchgen/R/r.R | 2 torch-0.17.0/torch/tools/torchgen/R/utils.R | 4 torch-0.17.0/torch/tools/torchgen/inst/declaration/Declarations-2.8.0.yaml |only torch-0.17.0/torch/vignettes/installation.Rmd | 64 66 files changed, 3118 insertions(+), 655 deletions(-)
Title: Data Structures for Single Cell Data
Description: Defines S4 classes for single-cell genomic data and associated
information, such as dimensionality reduction embeddings, nearest-neighbor
graphs, and spatially-resolved coordinates. Provides data access methods and
R-native hooks to ensure the Seurat object is familiar to other R users. See
Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>,
Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and
Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for
more details.
Author: Paul Hoffman [aut] ,
Rahul Satija [aut, cre] ,
David Collins [aut] ,
Yuhan Hao [aut] ,
Austin Hartman [aut] ,
Gesmira Molla [aut] ,
Andrew Butler [aut] ,
Tim Stuart [aut] ,
Madeline Kowalski [ctb] ,
Saket Choudhary [ctb] ,
Skylar Li [ctb],
Longda Jia [...truncated...]
Maintainer: Rahul Satija <seurat@nygenome.org>
Diff between SeuratObject versions 5.3.0 dated 2025-12-12 and 5.4.0 dated 2026-04-11
DESCRIPTION | 6 +- MD5 | 42 +++++++-------- NAMESPACE | 2 NEWS.md | 13 ++++ R/assay5.R | 46 ++++++++-------- R/fov.R | 59 ++++++++++++++++++++- R/generics.R | 26 +++++++++ R/seurat.R | 89 ++++++++++++++++++++++++-------- R/utils.R | 110 +++++++++++++++++++++++++++++++++------- build/SeuratObject.pdf |binary build/partial.rdb |binary build/stage23.rdb |binary man/Crop.Rd | 3 - man/DefaultDimReduc.Rd | 34 +++++++++++- man/FetchData.Rd | 3 + man/SaveSeuratRds.Rd | 6 +- man/dot-GetConsensusFeatures.Rd | 12 ++-- man/dot-GetVariableFeatures.Rd | 2 man/sub-LogMap-method.Rd | 2 man/subset.Seurat.Rd | 23 ++++++++ man/v5-assay-summaries.Rd | 2 tests/testthat/test_objects.R | 31 +++++++++++ 22 files changed, 402 insertions(+), 109 deletions(-)
Title: R Commander
Description: A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.
Author: John Fox [aut],
Milan Bouchet-Valat [aut],
Manuel Munoz-Marquez [aut, cre],
Liviu Andronic [ctb],
Michael Ash [ctb],
Theophilius Boye [ctb],
Stefano Calza [ctb],
Andy Chang [ctb],
Vilmantas Gegzna [ctb],
Philippe Grosjean [ctb],
Richard Heiberger [ct [...truncated...]
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Diff between Rcmdr versions 2.9-5 dated 2024-10-24 and 2.12.2 dated 2026-04-11
Rcmdr-2.12.2/Rcmdr/DESCRIPTION | 22 Rcmdr-2.12.2/Rcmdr/MD5 | 119 Rcmdr-2.12.2/Rcmdr/NAMESPACE | 460 Rcmdr-2.12.2/Rcmdr/NEWS | 16 Rcmdr-2.12.2/Rcmdr/R/Rcmdr-internal.R |only Rcmdr-2.12.2/Rcmdr/R/Rcmdr-package.R |only Rcmdr-2.12.2/Rcmdr/R/Rcmdr.Utilities.R |only Rcmdr-2.12.2/Rcmdr/R/Rexcel-specific.R | 1 Rcmdr-2.12.2/Rcmdr/R/cluster.R | 29 Rcmdr-2.12.2/Rcmdr/R/commander.R | 13 Rcmdr-2.12.2/Rcmdr/R/data-menu.R | 106 Rcmdr-2.12.2/Rcmdr/R/file-menu.R | 115 Rcmdr-2.12.2/Rcmdr/R/globals.R | 4 Rcmdr-2.12.2/Rcmdr/R/graphs-menu.R | 36 Rcmdr-2.12.2/Rcmdr/R/statistics-dimensional-menu.R | 21 Rcmdr-2.12.2/Rcmdr/R/statistics-means-menu.R | 34 Rcmdr-2.12.2/Rcmdr/R/statistics-models-menu.R | 77 Rcmdr-2.12.2/Rcmdr/R/statistics-summaries-menu.R | 15 Rcmdr-2.12.2/Rcmdr/R/statistics-tables-menu.R | 81 Rcmdr-2.12.2/Rcmdr/R/utilities.R | 490 Rcmdr-2.12.2/Rcmdr/build/vignette.rds |binary Rcmdr-2.12.2/Rcmdr/inst/doc/Commander-ru.Rnw |only Rcmdr-2.12.2/Rcmdr/inst/doc/Commander-ru.pdf |binary Rcmdr-2.12.2/Rcmdr/inst/doc/Empezando-con-Rcmdr-es.R | 2 Rcmdr-2.12.2/Rcmdr/inst/doc/Empezando-con-Rcmdr-es.Rnw | 13 Rcmdr-2.12.2/Rcmdr/inst/doc/Empezando-con-Rcmdr-es.pdf |binary Rcmdr-2.12.2/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr-ja.Rnw |only Rcmdr-2.12.2/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr-ja.pdf |binary Rcmdr-2.12.2/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr-ko.Rnw |only Rcmdr-2.12.2/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr-ko.pdf |binary Rcmdr-2.12.2/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr.Rnw | 8 Rcmdr-2.12.2/Rcmdr/inst/doc/Getting-Started-with-the-Rcmdr.pdf |binary Rcmdr-2.12.2/Rcmdr/inst/etc/Rcmdr-menus.txt | 2 Rcmdr-2.12.2/Rcmdr/inst/etc/language.csv |only Rcmdr-2.12.2/Rcmdr/inst/po/ca/LC_MESSAGES/R-Rcmdr.mo |binary Rcmdr-2.12.2/Rcmdr/inst/po/es/LC_MESSAGES/R-Rcmdr.mo |binary Rcmdr-2.12.2/Rcmdr/man/AuxiliarySoftware.Rd | 63 Rcmdr-2.12.2/Rcmdr/man/CFA.Rd | 58 Rcmdr-2.12.2/Rcmdr/man/Commander-es.Rd | 8 Rcmdr-2.12.2/Rcmdr/man/Commander.Rd | 2 Rcmdr-2.12.2/Rcmdr/man/Compute.Rd | 51 Rcmdr-2.12.2/Rcmdr/man/Plugins.Rd | 49 Rcmdr-2.12.2/Rcmdr/man/Rcmdr-package.Rd | 59 Rcmdr-2.12.2/Rcmdr/man/Rcmdr.Utilities.Rd | 824 Rcmdr-2.12.2/Rcmdr/man/RcmdrPager.Rd | 49 Rcmdr-2.12.2/Rcmdr/man/RecodeDialog.Rd | 95 Rcmdr-2.12.2/Rcmdr/man/RepeatedMeasuresDialogs.Rd | 90 Rcmdr-2.12.2/Rcmdr/man/ReshapeDatasetDialogs.Rd | 38 Rcmdr-2.12.2/Rcmdr/man/Scatter3DDialog.Rd | 97 Rcmdr-2.12.2/Rcmdr/man/ScriptEditor.Rd |only Rcmdr-2.12.2/Rcmdr/man/editDataset.Rd | 171 Rcmdr-2.12.2/Rcmdr/man/generalizedLinearModel.Rd | 70 Rcmdr-2.12.2/Rcmdr/man/hierarchicalCluster.Rd | 76 Rcmdr-2.12.2/Rcmdr/man/linearModel.Rd | 64 Rcmdr-2.12.2/Rcmdr/man/reexports.Rd |only Rcmdr-2.12.2/Rcmdr/man/saveOptions.Rd | 87 Rcmdr-2.12.2/Rcmdr/po/R-Rcmdr.pot | 50 Rcmdr-2.12.2/Rcmdr/po/R-ca.po |11588 +++++----- Rcmdr-2.12.2/Rcmdr/po/R-es.po | 163 Rcmdr-2.12.2/Rcmdr/vignettes/Commander-ru.Rnw |only Rcmdr-2.12.2/Rcmdr/vignettes/Commander-ru.asis.pdf |only Rcmdr-2.12.2/Rcmdr/vignettes/Empezando-con-Rcmdr-es.Rnw | 13 Rcmdr-2.12.2/Rcmdr/vignettes/Getting-Started-with-the-Rcmdr-ja.Rnw |only Rcmdr-2.12.2/Rcmdr/vignettes/Getting-Started-with-the-Rcmdr-ja.asis.pdf |only Rcmdr-2.12.2/Rcmdr/vignettes/Getting-Started-with-the-Rcmdr-ko.Rnw |only Rcmdr-2.12.2/Rcmdr/vignettes/Getting-Started-with-the-Rcmdr-ko.asis.pdf |only Rcmdr-2.12.2/Rcmdr/vignettes/Getting-Started-with-the-Rcmdr.Rnw | 8 Rcmdr-2.9-5/Rcmdr/man/Rcmdr-internal.Rd |only Rcmdr-2.9-5/Rcmdr/man/RcmdrEditor.Rd |only 69 files changed, 9085 insertions(+), 6352 deletions(-)
Title: Cubature over Polygonal Domains
Description: Numerical integration of continuously differentiable
functions f(x,y) over simple closed polygonal domains.
The following cubature methods are implemented:
product Gauss cubature (Sommariva and Vianello, 2007,
<doi:10.1007/s10543-007-0131-2>),
the simple two-dimensional midpoint rule
(wrapping 'spatstat.geom' functions), and
adaptive cubature for radially symmetric functions via line
integrate() along the polygon boundary (Meyer and Held, 2014,
<doi:10.1214/14-AOAS743>, Supplement B).
For simple integration along the axes, the 'cubature' package
is more appropriate.
Author: Sebastian Meyer [aut, cre, trl] ,
Leonhard Held [ths],
Michael Hoehle [ths]
Maintainer: Sebastian Meyer <seb.meyer@fau.de>
Diff between polyCub versions 0.9.2 dated 2025-02-11 and 0.9.3 dated 2026-04-11
polyCub-0.9.2/polyCub/man/dotprod.Rd |only polyCub-0.9.2/polyCub/man/isClosed.Rd |only polyCub-0.9.2/polyCub/man/isScalar.Rd |only polyCub-0.9.2/polyCub/man/plot_polyregion.Rd |only polyCub-0.9.2/polyCub/man/polygauss.Rd |only polyCub-0.9.2/polyCub/man/vecnorm.Rd |only polyCub-0.9.3/polyCub/DESCRIPTION | 29 +- polyCub-0.9.3/polyCub/MD5 | 61 ++--- polyCub-0.9.3/polyCub/NAMESPACE | 4 polyCub-0.9.3/polyCub/NEWS.md | 9 polyCub-0.9.3/polyCub/R/circleCub.R | 7 polyCub-0.9.3/polyCub/R/coerce-sp-methods.R | 2 polyCub-0.9.3/polyCub/R/plotpolyf.R | 4 polyCub-0.9.3/polyCub/R/polyCub.SV.R | 32 +- polyCub-0.9.3/polyCub/R/polyCub.exact.Gauss.R | 10 polyCub-0.9.3/polyCub/R/polyCub.iso.R | 15 - polyCub-0.9.3/polyCub/R/polyCub.midpoint.R | 6 polyCub-0.9.3/polyCub/R/tools.R | 47 +--- polyCub-0.9.3/polyCub/R/zzz.R | 31 -- polyCub-0.9.3/polyCub/build/partial.rdb |binary polyCub-0.9.3/polyCub/build/vignette.rds |binary polyCub-0.9.3/polyCub/inst/CITATION | 3 polyCub-0.9.3/polyCub/inst/REFERENCES.R |only polyCub-0.9.3/polyCub/inst/doc/polyCub.R | 12 - polyCub-0.9.3/polyCub/inst/doc/polyCub.Rmd | 97 ++++---- polyCub-0.9.3/polyCub/inst/doc/polyCub.html | 249 +++++++++-------------- polyCub-0.9.3/polyCub/man/circleCub.Gauss.Rd | 6 polyCub-0.9.3/polyCub/man/coerce-gpc-methods.Rd | 2 polyCub-0.9.3/polyCub/man/polyCub-package.Rd | 31 -- polyCub-0.9.3/polyCub/man/polyCub.SV.Rd | 29 +- polyCub-0.9.3/polyCub/man/polyCub.exact.Gauss.Rd | 6 polyCub-0.9.3/polyCub/man/polyCub.iso.Rd | 16 - polyCub-0.9.3/polyCub/man/polyCub.midpoint.Rd | 7 polyCub-0.9.3/polyCub/man/sfg2gpc.Rd | 2 polyCub-0.9.3/polyCub/vignettes/polyCub.Rmd | 97 ++++---- 35 files changed, 347 insertions(+), 467 deletions(-)
Title: Network Meta-Analysis using Frequentist Methods
Description: A comprehensive set of functions providing frequentist methods for network meta-analysis (Balduzzi et al., 2023) <doi:10.18637/jss.v106.i02> and supporting Schwarzer et al. (2015) <doi:10.1007/978-3-319-21416-0>, Chapter 8 "Network Meta-Analysis":
- frequentist network meta-analysis following Rücker (2012) <doi:10.1002/jrsm.1058>;
- additive network meta-analysis for combinations of treatments (Rücker et al., 2020) <doi:10.1002/bimj.201800167>;
- network meta-analysis of binary data using the Mantel-Haenszel or non-central hypergeometric distribution method (Efthimiou et al., 2019) <doi:10.1002/sim.8158>, or penalised logistic regression (Evrenoglou et al., 2022) <doi:10.1002/sim.9562>;
- rankograms and ranking of treatments by the Surface under the cumulative ranking curve (SUCRA) (Salanti et al., 2013) <doi:10.1016/j.jclinepi.2010.03.016>;
- ranking of treatments using P-scores (frequentist analogue of SUCRAs without resampling) according to [...truncated...]
Author: Gerta Ruecker [aut] ,
Ulrike Krahn [aut],
Jochem Koenig [aut] ,
Orestis Efthimiou [aut] ,
Annabel Davies [aut] ,
Theodoros Papakonstantinou [aut] ,
Theodoros Evrenoglou [ctb] ,
Krzysztof Ciomek [ctb] ,
Nana-Adjoa Kwarteng [ctb] ,
Guido Schwarzer [aut, [...truncated...]
Maintainer: Guido Schwarzer <guido.schwarzer@uniklinik-freiburg.de>
Diff between netmeta versions 3.3-1 dated 2026-01-28 and 3.4-0 dated 2026-04-11
DESCRIPTION | 10 - MD5 | 250 +++++++++++++++++------------------ NAMESPACE | 3 NEWS.md | 20 ++ R/Baker2009.R | 8 - R/Dogliotti2014.R | 8 - R/Dong2013.R | 8 - R/Franchini2012.R | 8 - R/Gurusamy2011.R | 8 - R/Linde2015.R | 8 - R/Linde2016.R | 3 R/Senn2013.R | 5 R/Stowe2010.R | 6 R/Woods2010.R | 9 - R/as.data.frame.netconnection.R | 6 R/as.data.frame.netmeta.R | 8 - R/crossnma2netmeta.R | 8 - R/decomp.design.R | 19 +- R/forest.netcomplex.R | 21 +- R/forest.netsplit.R | 2 R/funnel.netmeta.R | 25 ++- R/hasse.R | 14 - R/hatmatrix.R | 20 +- R/heatplot.R | 19 +- R/heatplot.netmeta.R | 19 +- R/invmat.R | 8 - R/merge.pairwise.R | 15 +- R/metabias.netmeta.R | 19 +- R/netbind.R | 25 +-- R/netcomb.R | 49 +++--- R/netcomparison.R | 44 +++--- R/netcomplex.R | 39 ++--- R/netconnection.R | 22 +-- R/netcontrib.R | 12 - R/netdistance.R | 16 +- R/netgraph.discomb.R | 5 R/netgraph.netcomb.R | 15 +- R/netgraph.netconnection.R | 4 R/netgraph.netimpact.R | 6 R/netgraph.netmeta.R | 64 ++++---- R/netheat.R | 30 ++-- R/netimpact.R | 16 +- R/netleague.R | 50 +++---- R/netmatrix.R | 10 - R/netmeasures.R | 10 - R/netmeta-package.R | 2 R/netmeta.R | 84 ++++++----- R/netmetabin.R | 92 +++++++++++- R/netmetareg-internal.R | 264 ++++++++++++++++++++++++++++++++++++- R/netmetareg.R | 151 ++++++++++++++++----- R/netpairwise.R | 16 +- R/netposet.R | 32 ++-- R/netrank.R | 32 ++-- R/netsplit.R | 38 ++--- R/nettable.R | 22 +-- R/plot.netposet.R | 2 R/plot.netrank.R | 2 R/plot.rankogram.R | 24 +-- R/print.netmeta.R | 2 R/radial.netmeta.R | 23 +-- R/rankogram.R | 2 R/rankogram.default.R | 15 -- R/rankogram.netmeta.R | 18 +- R/summary.netmetareg.R | 8 - R/treats.R | 20 +- build/vignette.rds |binary inst/doc/netmeta-workflow.pdf |binary inst/doc/netmeta.pdf |binary man/Baker2009.Rd | 8 - man/Dogliotti2014.Rd | 8 - man/Dong2013.Rd | 8 - man/Franchini2012.Rd | 8 - man/Gurusamy2011.Rd | 8 - man/Linde2015.Rd | 8 - man/Linde2016.Rd | 3 man/Senn2013.Rd | 5 man/Stowe2010.Rd | 6 man/Woods2010.Rd | 9 - man/as.data.frame.netconnection.Rd | 6 man/as.data.frame.netmeta.Rd | 8 - man/crossnma2netmeta.Rd | 8 - man/decomp.design.Rd | 19 +- man/forest.netcomplex.Rd | 21 +- man/forest.netsplit.Rd | 2 man/funnel.netmeta.Rd | 25 ++- man/hasse.netposet.Rd | 14 - man/hatmatrix.Rd | 20 +- man/heatplot.Rd | 19 +- man/heatplot.netmeta.Rd | 19 +- man/invmat.Rd | 8 - man/merge.pairwise.Rd | 15 +- man/metabias.netmeta.Rd | 19 +- man/netbind.Rd | 25 +-- man/netcomb.Rd | 49 +++--- man/netcomparison.Rd | 44 +++--- man/netcomplex.Rd | 39 ++--- man/netconnection.Rd | 22 +-- man/netcontrib.Rd | 12 - man/netdistance.Rd | 16 +- man/netgraph.discomb.Rd | 5 man/netgraph.netcomb.Rd | 15 +- man/netgraph.netconnection.Rd | 4 man/netgraph.netimpact.Rd | 6 man/netgraph.netmeta.Rd | 60 ++++---- man/netheat.Rd | 30 ++-- man/netimpact.Rd | 16 +- man/netleague.Rd | 50 +++---- man/netmatrix.Rd | 10 - man/netmeasures.Rd | 10 - man/netmeta.Rd | 84 ++++++----- man/netmetabin.Rd | 6 man/netmetareg.Rd | 10 - man/netpairwise.Rd | 16 +- man/netposet.Rd | 32 ++-- man/netrank.Rd | 32 ++-- man/netsplit.Rd | 38 ++--- man/nettable.Rd | 22 +-- man/plot.netposet.Rd | 2 man/plot.netrank.Rd | 2 man/plot.rankogram.Rd | 18 +- man/radial.netmeta.Rd | 23 +-- man/rankogram.Rd | 2 man/rankogram.default.Rd | 15 -- man/rankogram.netmeta.Rd | 18 +- man/summary.netmetareg.Rd | 8 - man/treats.Rd | 20 +- 126 files changed, 1698 insertions(+), 1160 deletions(-)
Title: Read and Write 'Parquet' Files
Description: Self-sufficient reader and writer for flat 'Parquet' files.
Can read most 'Parquet' data types. Can write many 'R' data types,
including factors and temporal types. See docs for limitations.
Author: Gabor Csardi [aut, cre],
Hannes Muehleisen [aut, cph] ,
Google Inc. [cph],
Apache Software Foundation [cph],
Posit Software, PBC [cph],
RAD Game Tools [cph],
Valve Software [cph],
Tenacious Software LLC [cph],
Facebook, Inc. [cph]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between nanoparquet versions 0.4.3 dated 2025-12-17 and 0.5.0 dated 2026-04-11
DESCRIPTION | 8 MD5 | 255 +- NEWS.md | 56 R/infer-parquet-schema.R | 47 R/parquet-column-types.R | 108 + R/parquet-metadata.R | 13 R/read-parquet.R | 79 R/schema.R | 245 +- R/utils.R | 5 R/write-parquet.R | 36 configure | 16 inst/WORDLIST | 4 man/infer_parquet_schema.Rd | 2 man/nanoparquet-package.Rd | 1 man/nanoparquet-types.Rd | 23 man/parquet_options.Rd | 2 man/parquet_schema.Rd | 12 man/read_parquet_info.Rd | 3 man/read_parquet_metadata.Rd | 4 man/read_parquet_page.Rd | 2 man/read_parquet_schema.Rd | 4 man/rle_decode_int.Rd | 4 man/rle_encode_int.Rd | 4 man/write_parquet.Rd | 4 src/Makevars.in | 31 src/RParquetOutFile.cpp | 450 +++- src/RParquetOutFile.h | 44 src/RParquetReader.cpp | 161 + src/RParquetReader.h | 18 src/arrow-schema.cpp | 15 src/cpp-utils.cpp | 104 - src/dictionary-encoding.cpp | 141 + src/encodings.cpp | 2 src/lib/ParquetOutFile.cpp | 303 ++- src/lib/ParquetOutFile.h | 69 src/lib/ParquetReader.cpp | 277 ++ src/lib/ParquetReader.h | 27 src/parquet/parquet_types.cpp | 952 +++++++++ src/parquet/parquet_types.h | 1010 +--------- src/protect.h | 2 src/r-base64.cpp | 3 src/r-nanoparquet.h | 19 src/r-utils.cpp | 259 ++ src/read-metadata.cpp | 2 src/read-pages.cpp | 93 src/read2.cpp | 49 src/rwrapper.cpp | 18 src/snappy.cpp | 2 src/test.cpp | 2 src/thrift/TNonCopyable.h | 2 src/thrift/TOutput.cpp | 2 src/thrift/TOutput.h | 4 src/thrift/TToString.h | 8 src/thrift/TUuid.cpp |only src/thrift/TUuid.h |only src/thrift/Thrift.h | 17 src/thrift/async/TConcurrentClientSyncInfo.h | 4 src/thrift/async/TEvhttpClientChannel.cpp | 3 src/thrift/async/TEvhttpServer.cpp | 7 src/thrift/async/TEvhttpServer.h | 2 src/thrift/concurrency/Mutex.h | 1 src/thrift/protocol/TBinaryProtocol.h | 4 src/thrift/protocol/TBinaryProtocol.tcc | 16 src/thrift/protocol/TCompactProtocol.h | 8 src/thrift/protocol/TCompactProtocol.tcc | 86 src/thrift/protocol/TDebugProtocol.cpp | 17 src/thrift/protocol/TDebugProtocol.h | 2 src/thrift/protocol/TEnum.h | 7 src/thrift/protocol/TJSONProtocol.cpp | 20 src/thrift/protocol/TJSONProtocol.h | 4 src/thrift/protocol/TProtocol.h | 48 src/thrift/protocol/TProtocolDecorator.h | 2 src/thrift/protocol/TVirtualProtocol.h | 8 src/thrift/server/TNonblockingServer.cpp | 13 src/thrift/server/TNonblockingServer.h | 3 src/thrift/transport/TBufferTransports.cpp | 9 src/thrift/transport/TBufferTransports.h | 13 src/thrift/transport/TFileTransport.cpp | 6 src/thrift/transport/TFileTransport.h | 2 src/thrift/transport/THttpServer.cpp | 2 src/thrift/transport/TPipeServer.cpp | 4 src/thrift/transport/TSSLServerSocket.cpp | 2 src/thrift/transport/TSSLSocket.cpp | 13 src/thrift/transport/TSSLSocket.h | 3 src/thrift/transport/TServerSocket.cpp | 2 src/thrift/transport/TSocket.cpp | 2 src/thrift/transport/TWebSocketServer.h | 2 src/thrift/windows/Operators.h | 5 src/thrift/windows/OverlappedSubmissionThread.h | 4 src/thrift/windows/SocketPair.cpp | 2 src/thrift/windows/Sync.h | 10 src/thrift/windows/TWinsockSingleton.h | 2 src/write2.cpp | 36 tests/testthat/_snaps/append-parquet.md |only tests/testthat/_snaps/infer-parquet-schema.md | 56 tests/testthat/_snaps/list.md |only tests/testthat/_snaps/parquet-metadata.md | 399 ++- tests/testthat/_snaps/parquet-schema.md | 93 tests/testthat/_snaps/read-parquet-2.md | 192 - tests/testthat/_snaps/read-parquet-3.md | 240 +- tests/testthat/_snaps/read-parquet-4.md | 24 tests/testthat/_snaps/read-parquet-6.md |only tests/testthat/_snaps/read-parquet.md | 18 tests/testthat/_snaps/write-encodings.md | 7 tests/testthat/_snaps/write-parquet-3.md | 548 ++--- tests/testthat/_snaps/write-parquet-4.md | 12 tests/testthat/_snaps/write-parquet-statistics.md | 16 tests/testthat/_snaps/write-parquet.md | 2 tests/testthat/data/create-data.py | 80 tests/testthat/data/decimal128.parquet |only tests/testthat/data/list-opt-opt.parquet |only tests/testthat/data/list-opt-req.parquet |only tests/testthat/data/list-req-opt.parquet |only tests/testthat/data/list-req-req.parquet |only tests/testthat/data/list-v2-opt-opt.parquet |only tests/testthat/data/list-v2-opt-req.parquet |only tests/testthat/data/list-v2-req-opt.parquet |only tests/testthat/data/list-v2-req-req.parquet |only tests/testthat/data/list.parquet |only tests/testthat/data/list_columns.parquet |only tests/testthat/data/old_list_structure.parquet |only tests/testthat/data/repeated_primitive_no_list.parquet |only tests/testthat/data/repeated_primitive_no_list_no_nest.parquet |only tests/testthat/fixtures |only tests/testthat/helper.R | 105 + tests/testthat/test-append-parquet.R | 31 tests/testthat/test-arrow-schema.R | 24 tests/testthat/test-list.R |only tests/testthat/test-parquet-cli.R |only tests/testthat/test-parquet-schema.R | 2 tests/testthat/test-read-parquet-5.R | 3 tests/testthat/test-read-parquet-6.R |only tests/testthat/test-read-parquet.R | 13 tests/testthat/test-write-encodings.R | 25 tests/testthat/test-write-large-files.R | 21 tests/testthat/test-write-parquet-2.R | 8 tests/testthat/test-write-parquet-3.R | 6 tests/testthat/test-write-parquet.R | 2 tools/types.Rmd | 23 139 files changed, 4934 insertions(+), 2413 deletions(-)
Title: Tools for Parsing, Manipulating, and Graphing Taxonomic
Abundance Data
Description: Reads, plots, and manipulates large
taxonomic data sets, like those generated from modern high-throughput
sequencing, such as metabarcoding (i.e. amplification metagenomics, 16S
metagenomics, etc). It provides a tree-based visualization called "heat
trees" used to depict statistics for every taxon in a taxonomy using
color and size. It also provides various functions to do common tasks in
microbiome bioinformatics on data in the 'taxmap' format defined by the
'taxa' package. The 'metacoder' package is described in the publication
by Foster et al. (2017) <doi:10.1371/journal.pcbi.1005404>.
Author: Zachary Foster [aut, cre],
Niklaus Grunwald [ths],
Kamil Slowikowski [ctb],
Scott Chamberlain [ctb],
Rob Gilmore [ctb]
Maintainer: Zachary Foster <zacharyfoster1989@gmail.com>
This is a re-admission after prior archival of version 0.3.8 dated 2025-02-11
Diff between metacoder versions 0.3.8 dated 2025-02-11 and 0.3.9 dated 2026-04-11
metacoder-0.3.8/metacoder/R/startup.R |only metacoder-0.3.8/metacoder/man/dot-onAttach.Rd |only metacoder-0.3.8/metacoder/man/startup_msg.Rd |only metacoder-0.3.9/metacoder/DESCRIPTION | 12 metacoder-0.3.9/metacoder/MD5 | 43 +- metacoder-0.3.9/metacoder/NAMESPACE | 1 metacoder-0.3.9/metacoder/NEWS.md | 4 metacoder-0.3.9/metacoder/R/as_phyloseq.R | 16 metacoder-0.3.9/metacoder/R/calculations--differential_abundance.R | 55 +-- metacoder-0.3.9/metacoder/R/calculations.R | 2 metacoder-0.3.9/metacoder/R/parsers.R | 25 - metacoder-0.3.9/metacoder/R/primersearch.R | 171 +++++----- metacoder-0.3.9/metacoder/R/read_fasta.R | 10 metacoder-0.3.9/metacoder/R/sequence_download.R | 23 - metacoder-0.3.9/metacoder/build/vignette.rds |binary metacoder-0.3.9/metacoder/man/as_phyloseq.Rd | 16 metacoder-0.3.9/metacoder/man/calc_diff_abund_deseq2.Rd | 55 +-- metacoder-0.3.9/metacoder/man/ncbi_taxon_sample.Rd | 23 - metacoder-0.3.9/metacoder/man/parse_phyloseq.Rd | 25 - metacoder-0.3.9/metacoder/man/primersearch.Rd | 59 +-- metacoder-0.3.9/metacoder/man/primersearch_is_installed.Rd | 5 metacoder-0.3.9/metacoder/man/primersearch_raw.Rd | 104 +++--- metacoder-0.3.9/metacoder/tests/testthat/test--calculations.R | 4 metacoder-0.3.9/metacoder/tests/testthat/test--parsers_and_writers.R | 4 24 files changed, 337 insertions(+), 320 deletions(-)
Title: Read Spectrometric Data and Metadata
Description: Parse various reflectance/transmittance/absorbance spectra file
formats to extract spectral data and metadata, as described in Gruson, White
& Maia (2019) <doi:10.21105/joss.01857>. Among other formats, it can import
files from 'Avantes' <https://www.avantes.com/>, 'CRAIC'
<https://www.microspectra.com/>, and 'OceanOptics'/'OceanInsight'
<https://www.oceanoptics.com/> brands.
Author: Hugo Gruson [cre, aut, cph] ,
Rafael Maia [aut, cph] ,
Thomas White [aut, cph] ,
Kotya Karapetyan [ctb, cph] )
Maintainer: Hugo Gruson <hugo.gruson+R@normalesup.org>
Diff between lightr versions 1.9.0 dated 2025-07-21 and 2.0.0 dated 2026-04-11
lightr-1.9.0/lightr/inst/testdata/compare/Avantes/1904090M1_0007.Raw8 |only lightr-1.9.0/lightr/inst/testdata/compare/Avantes/1904090M1_0007_1904090M1.TXT |only lightr-1.9.0/lightr/man/lr_parse_jaz.Rd |only lightr-1.9.0/lightr/man/lr_parse_jdx.Rd |only lightr-1.9.0/lightr/man/lr_parse_procspec.Rd |only lightr-1.9.0/lightr/man/lr_parse_spc.Rd |only lightr-1.9.0/lightr/man/lr_parse_trm.Rd |only lightr-1.9.0/lightr/man/lr_parse_ttt.Rd |only lightr-2.0.0/lightr/DESCRIPTION | 10 lightr-2.0.0/lightr/MD5 | 103 +++++---- lightr-2.0.0/lightr/NAMESPACE | 15 + lightr-2.0.0/lightr/NEWS.md | 24 ++ lightr-2.0.0/lightr/R/convert_tocsv.R | 36 +-- lightr-2.0.0/lightr/R/deprecated.R |only lightr-2.0.0/lightr/R/dispatch_parser.R | 29 +- lightr-2.0.0/lightr/R/endian_linter.R | 37 ++- lightr-2.0.0/lightr/R/get_metadata.R | 26 +- lightr-2.0.0/lightr/R/get_spec.R | 36 +-- lightr-2.0.0/lightr/R/parse_avantes_binary.R | 102 +++++++-- lightr-2.0.0/lightr/R/parse_avantes_converted.R | 30 +- lightr-2.0.0/lightr/R/parse_csv.R | 8 lightr-2.0.0/lightr/R/parse_generic.R | 11 - lightr-2.0.0/lightr/R/parse_jdx.R | 12 - lightr-2.0.0/lightr/R/parse_oceanoptics_converted.R | 46 ++-- lightr-2.0.0/lightr/R/parse_procspec.R | 12 - lightr-2.0.0/lightr/R/parse_spc.R | 14 + lightr-2.0.0/lightr/R/utils.R | 5 lightr-2.0.0/lightr/README.md | 108 +++++----- lightr-2.0.0/lightr/build/partial.rdb |binary lightr-2.0.0/lightr/build/vignette.rds |binary lightr-2.0.0/lightr/inst/WORDLIST | 9 lightr-2.0.0/lightr/inst/doc/batch_import.html | 7 lightr-2.0.0/lightr/inst/doc/design-principles.Rmd | 4 lightr-2.0.0/lightr/inst/doc/design-principles.html | 7 lightr-2.0.0/lightr/inst/doc/renormalise.R | 4 lightr-2.0.0/lightr/inst/doc/renormalise.Rmd | 4 lightr-2.0.0/lightr/inst/doc/renormalise.html | 14 - lightr-2.0.0/lightr/inst/doc/true_example.html | 11 - lightr-2.0.0/lightr/inst/testdata/compare/Avantes/30849.RFL8 |only lightr-2.0.0/lightr/inst/testdata/compare/Avantes/30849.csv |only lightr-2.0.0/lightr/inst/testdata/compare/rfl8x |only lightr-2.0.0/lightr/inst/testdata_sources.txt | 4 lightr-2.0.0/lightr/man/lr_parse_avantes_trm.Rd |only lightr-2.0.0/lightr/man/lr_parse_avantes_ttt.Rd |only lightr-2.0.0/lightr/man/lr_parse_craic_spc.Rd |only lightr-2.0.0/lightr/man/lr_parse_oceanoptics_jaz.Rd |only lightr-2.0.0/lightr/man/lr_parse_oceanoptics_jdx.Rd |only lightr-2.0.0/lightr/man/lr_parse_oceanoptics_procspec.Rd |only lightr-2.0.0/lightr/tests/testthat/_snaps/metadata.md | 57 ++--- lightr-2.0.0/lightr/tests/testthat/_snaps/parsers.md | 56 ++--- lightr-2.0.0/lightr/tests/testthat/test-endian_linter.R |only lightr-2.0.0/lightr/tests/testthat/test_compare_official.R | 56 +++++ lightr-2.0.0/lightr/tests/testthat/test_dispatch.R | 16 - lightr-2.0.0/lightr/tests/testthat/test_parsers.R | 63 +++-- lightr-2.0.0/lightr/vignettes/design-principles.Rmd | 4 lightr-2.0.0/lightr/vignettes/renormalise.Rmd | 4 56 files changed, 607 insertions(+), 377 deletions(-)
Title: Categorical Regression Splines
Description: Regression splines that handle a mix of continuous and categorical (discrete) data often encountered in applied settings. I would like to gratefully acknowledge support from the Natural Sciences and Engineering Research Council of Canada (NSERC, <https://www.nserc-crsng.gc.ca>), the Social Sciences and Humanities Research Council of Canada (SSHRC, <https://www.sshrc-crsh.gc.ca>), and the Shared Hierarchical Academic Research Computing Network (SHARCNET, <https://www.sharcnet.ca>). We would also like to acknowledge the contributions of the GNU GSL authors. In particular, we adapt the GNU GSL B-spline routine gsl_bspline.c adding automated support for quantile knots (in addition to uniform knots), providing missing functionality for derivatives, and for extending the splines beyond their endpoints.
Author: Jeffrey S. Racine [aut, cre],
Zhenghua Nie [aut],
Brian D. Ripley [ctb]
Maintainer: Jeffrey S. Racine <racinej@mcmaster.ca>
Diff between crs versions 0.15-39 dated 2026-01-29 and 0.15-41 dated 2026-04-11
crs-0.15-39/crs/R/console.R |only crs-0.15-39/crs/R/np.regression.glp.R |only crs-0.15-39/crs/demo/glpreg_npRmpi.R |only crs-0.15-39/crs/inst/doc/crs.R |only crs-0.15-39/crs/inst/doc/crs.Rnw |only crs-0.15-39/crs/inst/doc/crs.pdf |only crs-0.15-39/crs/inst/doc/crs_faq.Rnw |only crs-0.15-39/crs/inst/doc/crs_faq.pdf |only crs-0.15-39/crs/inst/doc/spline_primer.R |only crs-0.15-39/crs/inst/doc/spline_primer.Rnw |only crs-0.15-39/crs/inst/doc/spline_primer.pdf |only crs-0.15-39/crs/man/npglpreg.Rd |only crs-0.15-39/crs/src/nomad_src |only crs-0.15-39/crs/src/sgtelib_src |only crs-0.15-39/crs/vignettes/crs.Rnw |only crs-0.15-39/crs/vignettes/crs.bib |only crs-0.15-39/crs/vignettes/crs_faq.Rnw |only crs-0.15-39/crs/vignettes/crs_faq.bib |only crs-0.15-39/crs/vignettes/spline_primer.Rnw |only crs-0.15-39/crs/vignettes/spline_primer.bib |only crs-0.15-41/crs/CHANGELOG | 39 crs-0.15-41/crs/DESCRIPTION | 15 crs-0.15-41/crs/MD5 | 809 +++++++--- crs-0.15-41/crs/NAMESPACE | 59 crs-0.15-41/crs/R/clsd.R | 473 +++-- crs-0.15-41/crs/R/crs.R | 1620 ++++++++++++-------- crs-0.15-41/crs/R/crscv.R | 84 - crs-0.15-41/crs/R/crsiv.R | 817 ++++++++-- crs-0.15-41/crs/R/crsivderiv.R | 734 ++++++--- crs-0.15-41/crs/R/crssigtest.R | 157 - crs-0.15-41/crs/R/frscv.R | 176 +- crs-0.15-41/crs/R/frscvNOMAD.R | 1008 ++++++------ crs-0.15-41/crs/R/get.option.types.R | 85 - crs-0.15-41/crs/R/glp.model.matrix.R | 248 +-- crs-0.15-41/crs/R/gsl_bspline.R | 304 +-- crs-0.15-41/crs/R/kernel.R | 107 - crs-0.15-41/crs/R/krscv.R | 201 +- crs-0.15-41/crs/R/krscvNOMAD.R | 1176 +++++++------- crs-0.15-41/crs/R/matrix.combns.R | 36 crs-0.15-41/crs/R/mgcv.R | 35 crs-0.15-41/crs/R/nomad.progress.R |only crs-0.15-41/crs/R/print.snomadr.R | 76 crs-0.15-41/crs/R/progress.R |only crs-0.15-41/crs/R/snomadr.R | 418 +++-- crs-0.15-41/crs/R/spline.R | 1692 +++++++++++++++------ crs-0.15-41/crs/R/stepCV.R | 891 +++++------ crs-0.15-41/crs/R/util.R | 660 ++++---- crs-0.15-41/crs/R/zzz.R | 21 crs-0.15-41/crs/build/vignette.rds |binary crs-0.15-41/crs/cleanup | 5 crs-0.15-41/crs/demo/00Index | 2 crs-0.15-41/crs/demo/cqrs.R | 4 crs-0.15-41/crs/demo/crsiv.R | 214 +- crs-0.15-41/crs/demo/crsiv_exog.R | 222 +- crs-0.15-41/crs/demo/crsiv_exog_persp.R | 16 crs-0.15-41/crs/demo/radial_rgl.R | 14 crs-0.15-41/crs/demo/sine_rgl.R | 16 crs-0.15-41/crs/demo/spline.R | 1692 +++++++++++++++------ crs-0.15-41/crs/inst/doc/crs_getting_started.R |only crs-0.15-41/crs/inst/doc/crs_getting_started.Rmd |only crs-0.15-41/crs/inst/doc/crs_getting_started.html |only crs-0.15-41/crs/inst/nomad |only crs-0.15-41/crs/man/clsd.Rd | 167 +- crs-0.15-41/crs/man/crs-package.Rd | 5 crs-0.15-41/crs/man/crs.Rd | 319 ++- crs-0.15-41/crs/man/crsiv.Rd | 122 - crs-0.15-41/crs/man/crsivderiv.Rd | 121 + crs-0.15-41/crs/man/crssigtest.Rd | 12 crs-0.15-41/crs/man/data-Engel95.Rd | 12 crs-0.15-41/crs/man/data-cps71.Rd | 18 crs-0.15-41/crs/man/data-wage1.Rd | 34 crs-0.15-41/crs/man/frscv.Rd | 98 - crs-0.15-41/crs/man/frscvNOMAD.Rd | 151 + crs-0.15-41/crs/man/gsl-bs.Rd | 6 crs-0.15-41/crs/man/krscv.Rd | 113 - crs-0.15-41/crs/man/krscvNOMAD.Rd | 184 +- crs-0.15-41/crs/man/snomadr.Rd | 37 crs-0.15-41/crs/src/Makevars | 505 ++++++ crs-0.15-41/crs/src/RuniqueCombs.c | 103 + crs-0.15-41/crs/src/bspline.c | 8 crs-0.15-41/crs/src/crs_init.c | 12 crs-0.15-41/crs/src/gsl_bspline.c | 150 + crs-0.15-41/crs/src/hat_diag.c |only crs-0.15-41/crs/src/nomad4_src |only crs-0.15-41/crs/src/snomadr.cpp | 1757 +++++++++++----------- crs-0.15-41/crs/src/snomadr.h | 129 - crs-0.15-41/crs/tools |only crs-0.15-41/crs/vignettes/crs_getting_started.Rmd |only 88 files changed, 11212 insertions(+), 6977 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-06 4.0.3
2024-03-17 4.0.1