Title: Clinical Trial Simulator
Description: Simulate phase II and/or phase III clinical trials. It supports various types of endpoints and adaptive strategies. Tools for carrying out graphical testing procedure and combination test under group sequential design are also provided.
Author: Han Zhang [cre, aut]
Maintainer: Han Zhang <zhangh.ustc@gmail.com>
Diff between TrialSimulator versions 1.10.0 dated 2026-02-15 and 1.16.0 dated 2026-04-13
TrialSimulator-1.10.0/TrialSimulator/tests/testthat/test-trial.R |only TrialSimulator-1.16.0/TrialSimulator/DESCRIPTION | 11 TrialSimulator-1.16.0/TrialSimulator/LICENSE | 2 TrialSimulator-1.16.0/TrialSimulator/MD5 | 123 - TrialSimulator-1.16.0/TrialSimulator/NAMESPACE | 26 TrialSimulator-1.16.0/TrialSimulator/NEWS.md | 60 TrialSimulator-1.16.0/TrialSimulator/R/Arms.R | 2 TrialSimulator-1.16.0/TrialSimulator/R/CalendarTimeCondition.R | 3 TrialSimulator-1.16.0/TrialSimulator/R/Controllers.R | 5 TrialSimulator-1.16.0/TrialSimulator/R/CorrelatedPfsAndOs3.R | 1 TrialSimulator-1.16.0/TrialSimulator/R/Endpoint.R | 2 TrialSimulator-1.16.0/TrialSimulator/R/Endpoints.R | 16 TrialSimulator-1.16.0/TrialSimulator/R/EnrollmentCountCondition.R | 10 TrialSimulator-1.16.0/TrialSimulator/R/GraphicalTesting.R | 1 TrialSimulator-1.16.0/TrialSimulator/R/GroupSequentialTest.R | 1 TrialSimulator-1.16.0/TrialSimulator/R/Listeners.R | 8 TrialSimulator-1.16.0/TrialSimulator/R/Milestones.R | 2 TrialSimulator-1.16.0/TrialSimulator/R/PiecewiseConstantExponentialRNG.R | 1 TrialSimulator-1.16.0/TrialSimulator/R/Regimens.R |only TrialSimulator-1.16.0/TrialSimulator/R/Trial.R | 11 TrialSimulator-1.16.0/TrialSimulator/R/Trials.R | 797 +++++++--- TrialSimulator-1.16.0/TrialSimulator/R/computeCumulativeAlphaSpent.R | 2 TrialSimulator-1.16.0/TrialSimulator/R/expandRegimen.R |only TrialSimulator-1.16.0/TrialSimulator/R/fitLinear.R | 2 TrialSimulator-1.16.0/TrialSimulator/R/fitLogistic.R | 1 TrialSimulator-1.16.0/TrialSimulator/R/fitLogrank.R | 1 TrialSimulator-1.16.0/TrialSimulator/R/package-imports.R |only TrialSimulator-1.16.0/TrialSimulator/R/qPiecewiseExponential.R |only TrialSimulator-1.16.0/TrialSimulator/R/regimen.R |only TrialSimulator-1.16.0/TrialSimulator/R/solveMixtureExponentialDistribution.R | 1 TrialSimulator-1.16.0/TrialSimulator/R/solvePiecewiseConstantExponentialDistribution.R |only TrialSimulator-1.16.0/TrialSimulator/R/summarizeMilestoneTime.R | 1 TrialSimulator-1.16.0/TrialSimulator/R/summarizeTable.R | 6 TrialSimulator-1.16.0/TrialSimulator/README.md | 20 TrialSimulator-1.16.0/TrialSimulator/build/vignette.rds |binary TrialSimulator-1.16.0/TrialSimulator/inst/doc/adaptiveDesign.Rmd | 3 TrialSimulator-1.16.0/TrialSimulator/inst/doc/adaptiveDesign.html | 110 - TrialSimulator-1.16.0/TrialSimulator/inst/doc/crossoverWashout.R |only TrialSimulator-1.16.0/TrialSimulator/inst/doc/crossoverWashout.Rmd |only TrialSimulator-1.16.0/TrialSimulator/inst/doc/crossoverWashout.html |only TrialSimulator-1.16.0/TrialSimulator/inst/doc/defineNonTimeToEventEndpoints.html | 75 TrialSimulator-1.16.0/TrialSimulator/inst/doc/defineTimeToEventEndpoints.html | 9 TrialSimulator-1.16.0/TrialSimulator/inst/doc/doseRanging.html | 181 +- TrialSimulator-1.16.0/TrialSimulator/inst/doc/dynamicTreatmentSwitching.R |only TrialSimulator-1.16.0/TrialSimulator/inst/doc/dynamicTreatmentSwitching.Rmd |only TrialSimulator-1.16.0/TrialSimulator/inst/doc/dynamicTreatmentSwitching.html |only TrialSimulator-1.16.0/TrialSimulator/inst/doc/fixedDesign.Rmd | 3 TrialSimulator-1.16.0/TrialSimulator/inst/doc/fixedDesign.html | 22 TrialSimulator-1.16.0/TrialSimulator/inst/doc/responseAdaptive.R | 4 TrialSimulator-1.16.0/TrialSimulator/inst/doc/responseAdaptive.Rmd | 8 TrialSimulator-1.16.0/TrialSimulator/inst/doc/responseAdaptive.html | 213 +- TrialSimulator-1.16.0/TrialSimulator/inst/doc/simulatePfsAndOs.html | 22 TrialSimulator-1.16.0/TrialSimulator/inst/doc/wrappers.html | 125 - TrialSimulator-1.16.0/TrialSimulator/man/Controllers.Rd | 5 TrialSimulator-1.16.0/TrialSimulator/man/Endpoints.Rd | 2 TrialSimulator-1.16.0/TrialSimulator/man/Regimens.Rd |only TrialSimulator-1.16.0/TrialSimulator/man/Trials.Rd | 169 ++ TrialSimulator-1.16.0/TrialSimulator/man/endpoint.Rd | 2 TrialSimulator-1.16.0/TrialSimulator/man/expandRegimen.Rd |only TrialSimulator-1.16.0/TrialSimulator/man/qPiecewiseExponential.Rd |only TrialSimulator-1.16.0/TrialSimulator/man/regimen.Rd |only TrialSimulator-1.16.0/TrialSimulator/man/solvePiecewiseConstantExponentialDistribution.Rd |only TrialSimulator-1.16.0/TrialSimulator/man/trial.Rd | 11 TrialSimulator-1.16.0/TrialSimulator/tests/testthat/helper.R |only TrialSimulator-1.16.0/TrialSimulator/tests/testthat/test-adaptive.R |only TrialSimulator-1.16.0/TrialSimulator/tests/testthat/test-models.R |only TrialSimulator-1.16.0/TrialSimulator/tests/testthat/test-parallel.R |only TrialSimulator-1.16.0/TrialSimulator/tests/testthat/test-regimen.R |only TrialSimulator-1.16.0/TrialSimulator/tests/testthat/test-trial-core.R |only TrialSimulator-1.16.0/TrialSimulator/tests/testthat/test-utils.R |only TrialSimulator-1.16.0/TrialSimulator/vignettes/adaptiveDesign.Rmd | 3 TrialSimulator-1.16.0/TrialSimulator/vignettes/crossoverWashout.Rmd |only TrialSimulator-1.16.0/TrialSimulator/vignettes/crossover_readout.png |only TrialSimulator-1.16.0/TrialSimulator/vignettes/dynamicTreatmentSwitching.Rmd |only TrialSimulator-1.16.0/TrialSimulator/vignettes/fixedDesign.Rmd | 3 TrialSimulator-1.16.0/TrialSimulator/vignettes/responseAdaptive.Rmd | 8 TrialSimulator-1.16.0/TrialSimulator/vignettes/simulation_flowchart.svg |only 77 files changed, 1348 insertions(+), 746 deletions(-)
More information about TrialSimulator at CRAN
Permanent link
Title: Read, Write, and Modify TOML Files
Description: Simple toolkit for working with TOML text. Based on tomledit which
allows for modifying TOML while preserving order, comments,and whitespace.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between toml versions 1.0.0 dated 2025-10-16 and 1.1.0 dated 2026-04-13
DESCRIPTION | 11 ++++++----- LICENSE | 2 +- MD5 | 9 +++++---- NEWS |only inst/js/tomlr.js | 4 ++-- inst/js/tomlr.wasm |binary 6 files changed, 14 insertions(+), 12 deletions(-)
Title: Projection Pursuit
Description: Projection pursuit (PP) with 17 methods and grand tour with 3 methods. Being that projection pursuit searches for low-dimensional linear projections in high-dimensional data structures, while grand tour is a technique used to explore multivariate statistical data through animation.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between Pursuit versions 1.0.9 dated 2025-04-18 and 1.1.0 dated 2026-04-13
DESCRIPTION | 14 ++++++++------ MD5 | 4 ++-- man/Pursuit-package.Rd | 4 ++-- 3 files changed, 12 insertions(+), 10 deletions(-)
Title: Download 'nflverse' Data
Description: A minimal package for downloading data from 'GitHub'
repositories of the 'nflverse' project.
Author: Tan Ho [aut, cre, cph] ,
Sebastian Carl [aut],
John Edwards [ctb],
Ben Baldwin [ctb],
Thomas Mock [ctb],
Lee Sharpe [ctb],
Pranav Rajaram [ctb]
Maintainer: Tan Ho <tan@tanho.ca>
Diff between nflreadr versions 1.5.0 dated 2025-09-02 and 1.5.1 dated 2026-04-13
DESCRIPTION | 12 +- MD5 | 158 +++++++++++++++++----------------- NEWS.md | 17 +++ R/from_url.R | 43 ++------- R/load_combine.R | 4 R/load_contracts.R | 4 R/load_depth_charts.R | 2 R/load_draft_picks.R | 4 R/load_espn_qbr.R | 4 R/load_ftn_charting.R | 4 R/load_injuries.R | 4 R/load_nextgen_stats.R | 4 R/load_officials.R | 4 R/load_participation.R | 4 R/load_pbp.R | 6 - R/load_pfr_advstats.R | 4 R/load_players.R | 4 R/load_rosters.R | 4 R/load_rosters_weekly.R | 4 R/load_snap_counts.R | 4 R/load_stats.R | 6 - R/load_teams.R | 20 +++- R/utils.R | 2 R/utils_cache_clear.R | 2 R/utils_date.R | 16 ++- R/utils_download_nflverse.R | 16 +-- R/zzz.R | 25 ----- README.md | 49 +++++----- build/vignette.rds |binary data/dictionary_combine.rda |binary data/dictionary_contracts.rda |binary data/dictionary_depth_charts.rda |binary data/dictionary_draft_picks.rda |binary data/dictionary_espn_qbr.rda |binary data/dictionary_ff_opportunity.rda |binary data/dictionary_ff_playerids.rda |binary data/dictionary_ff_rankings.rda |binary data/dictionary_ftn_charting.rda |binary data/dictionary_injuries.rda |binary data/dictionary_nextgen_stats.rda |binary data/dictionary_participation.rda |binary data/dictionary_pbp.rda |binary data/dictionary_pfr_passing.rda |binary data/dictionary_player_stats.rda |binary data/dictionary_players.rda |binary data/dictionary_roster_status.rda |binary data/dictionary_rosters.rda |binary data/dictionary_schedules.rda |binary data/dictionary_snap_counts.rda |binary data/dictionary_team_stats.rda |binary data/dictionary_trades.rda |binary data/player_name_mapping.rda |binary data/team_abbr_mapping.rda |binary data/team_abbr_mapping_norelocate.rda |binary inst/doc/dictionary_pbp.html | 2 man/latest_season.Rd | 13 ++ man/load_combine.Rd | 2 man/load_contracts.Rd | 2 man/load_depth_charts.Rd | 2 man/load_draft_picks.Rd | 2 man/load_espn_qbr.Rd | 2 man/load_from_url.Rd | 4 man/load_ftn_charting.Rd | 2 man/load_injuries.Rd | 2 man/load_nextgen_stats.Rd | 2 man/load_officials.Rd | 2 man/load_participation.Rd | 2 man/load_pbp.Rd | 4 man/load_pfr_advstats.Rd | 2 man/load_player_stats.Rd | 2 man/load_players.Rd | 2 man/load_rosters.Rd | 2 man/load_rosters_weekly.Rd | 2 man/load_snap_counts.Rd | 2 man/load_team_stats.Rd | 2 man/load_teams.Rd | 8 + man/nflverse_download.Rd | 2 man/qs_from_url.Rd | 8 + tests/testthat/test-from_url.R | 20 ---- tests/testthat/test-nflverse.R | 10 +- 80 files changed, 267 insertions(+), 268 deletions(-)
Title: Analise multivariada (brazilian portuguese)
Description: Analise multivariada, tendo funcoes que executam analise de correspondencia simples (CA) e multipla (MCA), analise de componentes principais (PCA), analise de correlacao canonica (CCA), analise fatorial (FA), escalonamento multidimensional (MDS), analise discriminante linear (LDA) e quadratica (QDA), analise de cluster hierarquico e nao hierarquico, regressao linear simples e multipla, analise de multiplos fatores (MFA) para dados quantitativos, qualitativos, de frequencia (MFACT) e dados mistos, biplot, scatter plot, projection pursuit (PP), grant tour e outras funcoes uteis para a analise multivariada.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar.pt versions 2.2.7 dated 2025-04-18 and 2.2.8 dated 2026-04-13
DESCRIPTION | 14 ++++++++------ MD5 | 4 ++-- man/MVar.pt-package.Rd | 4 ++-- 3 files changed, 12 insertions(+), 10 deletions(-)
Title: Multivariate Analysis
Description: Multivariate analysis, having functions that perform simple correspondence analysis (CA) and multiple correspondence analysis (MCA), principal components analysis (PCA), canonical correlation analysis (CCA), factorial analysis (FA), multidimensional scaling (MDS), linear (LDA) and quadratic discriminant analysis (QDA), hierarchical and non-hierarchical cluster analysis, simple and multiple linear regression, multiple factor analysis (MFA) for quantitative, qualitative, frequency (MFACT) and mixed data, biplot, scatter plot, projection pursuit (PP), grant tour method and other useful functions for the multivariate analysis.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar versions 2.2.7 dated 2025-04-18 and 2.2.8 dated 2026-04-13
DESCRIPTION | 14 ++++++++------ MD5 | 4 ++-- man/MVar-package.Rd | 4 ++-- 3 files changed, 12 insertions(+), 10 deletions(-)
Title: Bayesian Network Meta-Analysis of Individual and Aggregate Data
Description: Network meta-analysis and network meta-regression models for
aggregate data, individual patient data, and mixtures of both individual
and aggregate data using multilevel network meta-regression as described by
Phillippo et al. (2020) <doi:10.1111/rssa.12579>. Models are estimated in a
Bayesian framework using 'Stan'.
Author: David M. Phillippo [aut, cre] ,
Samuel J. Perren [ctb] ,
Niels Dunnewind [ctb]
Maintainer: David M. Phillippo <david.phillippo@bristol.ac.uk>
Diff between multinma versions 0.8.1 dated 2025-05-30 and 0.9.0 dated 2026-04-13
DESCRIPTION | 17 MD5 | 200 NAMESPACE | 2 NEWS.md | 32 R/data.R | 19 R/geom_km.R | 2 R/mspline.R | 45 R/multinma-package.R | 2 R/nma.R | 111 R/nma_data-class.R | 2 R/nma_data.R | 72 R/nma_dic-class.R | 2 R/nma_dic.R | 4 R/nma_prior-class.R | 1 R/predict.R | 390 R/priors.R | 1 R/ranks.R | 93 R/relative_effects.R | 54 R/stan_nma-class.R | 4 README.md | 20 build/partial.rdb |binary build/vignette.rds |binary data/certolizumab.rda |only inst/REFERENCES.bib | 56 inst/doc/example_bcg_vaccine.html | 2 inst/doc/example_blocker.html | 2 inst/doc/example_certolizumab.html |only inst/doc/example_certolizumab.html.asis |only inst/doc/example_diabetes.html | 2 inst/doc/example_dietary_fat.html | 2 inst/doc/example_hta_psoriasis.html | 2 inst/doc/example_ndmm.html | 77 inst/doc/example_parkinsons.html | 2 inst/doc/example_plaque_psoriasis.html | 4 inst/doc/example_smoking.html | 2 inst/doc/example_social_anxiety.html | 158 inst/doc/example_statins.html | 2 inst/doc/example_thrombolytics.html | 2 inst/doc/vignette_overview.Rmd | 1 inst/doc/vignette_overview.html | 18 inst/stan/binomial_1par.stan | 54 inst/stan/binomial_2par.stan | 44 inst/stan/include/data_common.stan | 5 inst/stan/include/transformed_data_common.stan | 26 inst/stan/include/transformed_parameters_common.stan | 250 inst/stan/normal.stan | 67 inst/stan/ordered_multinomial.stan | 24 inst/stan/poisson.stan | 41 inst/stan/survival_mspline.stan | 10 inst/stan/survival_param.stan | 10 man/certolizumab.Rd |only man/geom_km.Rd | 2 man/knots.stan_nma.Rd |only man/make_knots.Rd | 4 man/mspline.Rd | 2 man/multinma-package.Rd | 1 man/nma.Rd | 23 man/plot_integration_error.Rd | 2 man/plot_prior_posterior.Rd | 2 man/posterior_ranks.Rd | 312 man/predict.stan_nma.Rd | 6 src/stanExports_binomial_1par.cc | 34 src/stanExports_binomial_1par.h | 3065 +++--- src/stanExports_binomial_2par.cc | 34 src/stanExports_binomial_2par.h | 3167 +++--- src/stanExports_normal.cc | 34 src/stanExports_normal.h | 2975 +++--- src/stanExports_ordered_multinomial.cc | 34 src/stanExports_ordered_multinomial.h | 3507 +++---- src/stanExports_poisson.cc | 34 src/stanExports_poisson.h | 2897 +++--- src/stanExports_predict_delta_new.cc | 34 src/stanExports_survival_mspline.cc | 34 src/stanExports_survival_mspline.h | 4048 ++++---- src/stanExports_survival_param.cc | 34 src/stanExports_survival_param.h | 4525 +++++----- tests/testthat/_snaps/plot_nma_data/atrial-fibrillation-network-star.svg | 150 tests/testthat/_snaps/plot_nma_data/atrial-fibrillation-network.svg | 190 tests/testthat/_snaps/plot_nma_data/bcg-vaccine-network.svg | 26 tests/testthat/_snaps/plot_nma_data/blocker-network.svg | 26 tests/testthat/_snaps/plot_nma_data/diabetes-network.svg | 106 tests/testthat/_snaps/plot_nma_data/dietary-fat-network.svg | 26 tests/testthat/_snaps/plot_nma_data/duplicated-agd-arms-network.svg | 26 tests/testthat/_snaps/plot_nma_data/duplicated-agd-contrasts-network.svg | 26 tests/testthat/_snaps/plot_nma_data/duplicated-ipd-arms-network.svg | 26 tests/testthat/_snaps/plot_nma_data/hta-psoriasis-network.svg | 86 tests/testthat/_snaps/plot_nma_data/ndmm-network.svg | 66 tests/testthat/_snaps/plot_nma_data/parkinsons-arm-network.svg | 74 tests/testthat/_snaps/plot_nma_data/parkinsons-contrast-network.svg | 74 tests/testthat/_snaps/plot_nma_data/parkinsons-mixed-network.svg | 74 tests/testthat/_snaps/plot_nma_data/plaque-psoriasis-network.svg | 130 tests/testthat/_snaps/plot_nma_data/smoking-network.svg | 58 tests/testthat/_snaps/plot_nma_data/statins-network.svg | 26 tests/testthat/_snaps/plot_nma_data/thrombolytics-dias-network.svg | 110 tests/testthat/_snaps/plot_nma_data/thrombolytics-network.svg | 110 tests/testthat/_snaps/plot_nma_data/transfusion-network.svg | 26 tests/testthat/test-data_set.R | 4 tests/testthat/test-example_certolizumab.R |only tests/testthat/test-example_dietary_fat.R | 47 tests/testthat/test-example_social_anxiety.R | 59 tests/testthat/test-knots.R |only tests/testthat/test-plot_nma_data.R | 46 tests/testthat/test-predict.R | 778 + vignettes/example_certolizumab.html.asis |only vignettes/vignette_overview.Rmd | 1 105 files changed, 15330 insertions(+), 13787 deletions(-)
Title: Multiple Factor Analysis (MFA)
Description: Performs Multiple Factor Analysis method for quantitative, categorical, frequency and mixed data, in addition to generating a lot of graphics, also has other useful functions.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MFAg versions 2.2 dated 2025-04-18 and 2.3 dated 2026-04-13
DESCRIPTION | 14 ++++++++------ MD5 | 4 ++-- man/MFAg-package.Rd | 4 ++-- 3 files changed, 12 insertions(+), 10 deletions(-)
Title: Machine Learning
Description: Machine learning, containing several algorithms for supervised and unsupervised classification, in addition to a function that plots the Receiver Operating Characteristic (ROC) and Precision-Recall (PRC) curve graphs, and also a function that returns several metrics used for model evaluation, the latter can be used in ranking results from other packs.
Author: Paulo Cesar Ossani [aut, cre]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between Kira versions 1.0.7 dated 2025-04-18 and 1.0.8 dated 2026-04-13
DESCRIPTION | 11 ++++++----- MD5 | 4 ++-- man/Kira-package.Rd | 4 ++-- 3 files changed, 10 insertions(+), 9 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and an R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 1.5.1 dated 2026-03-26 and 1.5.2 dated 2026-04-13
DESCRIPTION | 6 MD5 | 44 +-- NEWS.md | 27 + R/Viewer.R | 2 R/backend-dbplyr__duckdb_connection.R | 20 - R/dbSendQuery__duckdb_connection_character.R | 2 R/version.R | 2 inst/include/cpp11/function.hpp | 4 src/duckdb.tar.xz |binary src/include/convert.hpp | 3 src/include/rapi.hpp | 2 src/reltoaltrep.cpp | 14 src/utils.cpp | 6 tests/testthat/_snaps/backend-dbplyr__duckdb_connection.md | 22 - tests/testthat/_snaps/sql.md | 3 tests/testthat/_snaps/types.md | 2 tests/testthat/helper-skip.R | 4 tests/testthat/setup.R | 2 tests/testthat/test-arrow.R | 186 ++++++------- tests/testthat/test-arrow_stream.R | 31 +- tests/testthat/test-backend-dbplyr__duckdb_connection.R | 24 - tests/testthat/test-register_arrow.R | 2 tests/testthat/test-types.R | 1 23 files changed, 223 insertions(+), 186 deletions(-)
Title: Utilities for Interacting with the 'Posit Connect' Server API
Description: Provides a helpful 'R6' class and methods for interacting with
the 'Posit Connect' Server API along with some meaningful utility functions
for regular tasks. API documentation varies by 'Posit Connect' installation
and version, but the latest documentation is also hosted publicly at
<https://docs.posit.co/connect/api/>.
Author: Kara Woo [aut, cre],
Toph Allen [aut],
Neal Richardson [aut],
Sean Lopp [aut],
Cole Arendt [aut],
Posit, PBC [cph, fnd]
Maintainer: Kara Woo <kara.woo@posit.co>
Diff between connectapi versions 0.11.1 dated 2026-03-21 and 0.12.0 dated 2026-04-13
DESCRIPTION | 6 +-- MD5 | 20 ++++++------ NEWS.md | 16 ++++++++-- R/connect.R | 4 +- R/get.R | 20 +++++++++++- R/utils.R | 11 +++++-- inst/doc/customize-http.html | 4 +- inst/doc/getting-started.html | 4 +- man/get_oauth_content_credentials.Rd | 6 ++- tests/testthat/test-connect.R | 54 +++++++++++++++++++++++++++++++++-- tests/testthat/test-oauth.R | 24 ++++++++++++++- 11 files changed, 137 insertions(+), 32 deletions(-)
Title: Joint Analysis of Experiments with Mixtures and Random Effects
Description: Performs a joint analysis of experiments with mixtures and random effects, taking on a process variable represented by a covariable.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between Blendstat versions 1.0.5 dated 2024-06-21 and 1.0.6 dated 2026-04-13
DESCRIPTION | 16 +++++++++------- MD5 | 4 ++-- man/Blendstat-package.Rd | 4 ++-- 3 files changed, 13 insertions(+), 11 deletions(-)
Title: Authentication in Shiny with Auth0
Description: Uses Auth0 API (see <https://auth0.com> for more
information) to use a simple authentication system. It provides
tools to log in and out a shiny application using social networks or a list
of e-mails.
Author: Julio Trecenti [cre],
Daniel Falbel [aut],
Jose Jesus [ctb],
Dean Attali [ctb],
William Amorim [ctb],
C Lente [ctb]
Maintainer: Julio Trecenti <julio.trecenti@gmail.com>
Diff between auth0 versions 0.2.3 dated 2023-03-26 and 0.3.0 dated 2026-04-13
DESCRIPTION | 10 ++-- MD5 | 24 +++++----- NEWS.md | 7 +++ R/auth0.R | 5 +- R/shiny.R | 112 +++++++++++++++++++++++++++++-------------------- R/utils.R | 42 +++++++++++++++++- build/vignette.rds |binary inst/doc/tutorial.R | 2 inst/doc/tutorial.Rmd | 2 inst/doc/tutorial.html | 50 +++++++++++---------- man/shinyAppAuth0.Rd | 11 ++++ man/ui-server.Rd | 4 + vignettes/tutorial.Rmd | 2 13 files changed, 178 insertions(+), 93 deletions(-)
Title: AI Screening Tools in R for Systematic Reviewing
Description: Provides functions to conduct title and abstract screening in systematic reviews using large language models, such as the Generative Pre-trained Transformer (GPT) models from 'OpenAI' <https://developers.openai.com/>. These functions can enhance the quality of title and abstract screenings while reducing the total screening time significantly. In addition, the package includes tools for quality assessment of title and abstract screenings, as described in Vembye, Christensen, Mølgaard, and Schytt (2025) <DOI:10.1037/met0000769>.
Author: Mikkel H. Vembye [aut, cre] ,
Thomas Olsen [aut]
Maintainer: Mikkel H. Vembye <mikkel.vembye@gmail.com>
Diff between AIscreenR versions 0.3.0 dated 2026-04-13 and 0.3.1 dated 2026-04-13
DESCRIPTION | 6 +- MD5 | 14 ++--- NEWS.md | 60 +++++++++++------------ R/tabscreen_gpt.R | 12 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/Using-GPT-API-Models-For-Screening.html | 2 man/tabscreen_gpt.tools.Rd | 12 ++-- 8 files changed, 54 insertions(+), 52 deletions(-)
Title: Multi-Category Classification Accuracy
Description: It contains six common multi-category classification accuracy evaluation measures.
All of these measures could be found in Li and Ming (2019) <doi:10.1002/sim.8103>. Specifically,
Hypervolume Under Manifold (HUM), described in
Li and Fine (2008) <doi:10.1093/biostatistics/kxm050>.
Correct Classification Percentage (CCP), Integrated Discrimination Improvement (IDI), Net Reclassification Improvement (NRI), R-Squared Value (RSQ), described in
Li, Jiang and Fine (2013) <doi:10.1093/biostatistics/kxs047>.
Polytomous Discrimination Index (PDI), described in
Van Calster et al. (2012) <doi:10.1007/s10654-012-9733-3>.
Li et al. (2018) <doi:10.1177/0962280217692830>.
PDI with variance estimation using Dover et al. (2021) <doi:10.1002/sim.9187>.
We described all these above measures and our mcca package in
Li, Gao and D'Agostino (2019) <doi:10.1002/sim.8103>.
Author: Ming Gao [aut],
Jialiang Li [aut, cre],
Pan Liu [aut],
Ben Van Calster [aut]
Maintainer: Jialiang Li <stalj@nus.edu.sg>
Diff between mcca versions 0.8.1 dated 2026-02-17 and 0.8.2 dated 2026-04-13
mcca-0.8.1/mcca/man/pdi_var.Rd |only mcca-0.8.2/mcca/DESCRIPTION | 6 mcca-0.8.2/mcca/MD5 | 41 - mcca-0.8.2/mcca/R/pdi.R | 794 +++++++++++++++++++----------- mcca-0.8.2/mcca/R/pm.R | 277 ++++------ mcca-0.8.2/mcca/R/utils.R | 1 mcca-0.8.2/mcca/man/ccp.Rd | 206 +++---- mcca-0.8.2/mcca/man/estp.Rd | 160 +++--- mcca-0.8.2/mcca/man/ests.Rd | 190 +++---- mcca-0.8.2/mcca/man/hum.Rd | 176 +++--- mcca-0.8.2/mcca/man/idi.Rd | 126 ++-- mcca-0.8.2/mcca/man/mcca-package.Rd | 243 ++++----- mcca-0.8.2/mcca/man/nri.Rd | 128 ++-- mcca-0.8.2/mcca/man/pdi.Rd | 199 ++++--- mcca-0.8.2/mcca/man/plot.mcca.hum.Rd | 90 +-- mcca-0.8.2/mcca/man/pm.Rd | 90 +-- mcca-0.8.2/mcca/man/print.mcca.ccp.Rd | 80 +-- mcca-0.8.2/mcca/man/print.mcca.hum.Rd | 80 +-- mcca-0.8.2/mcca/man/print.mcca.pdi.Rd | 80 +-- mcca-0.8.2/mcca/man/print.mcca.pdi.var.Rd | 10 mcca-0.8.2/mcca/man/print.mcca.rsq.Rd | 80 +-- mcca-0.8.2/mcca/man/rsq.Rd | 198 +++---- 22 files changed, 1761 insertions(+), 1494 deletions(-)
Title: Statistical Methods for Survival Data with Dependent Censoring
Description: Several statistical methods for analyzing survival data under various forms of dependent
censoring are implemented in the package. In addition to accounting for dependent censoring, it
offers tools to adjust for unmeasured confounding factors. The implemented approaches allow
users to estimate the dependency between survival time and dependent censoring time, based
solely on observed survival data. For more details on the methods, refer to Deresa and Van
Keilegom (2021) <doi:10.1093/biomet/asaa095>, Czado and Van Keilegom (2023)
<doi:10.1093/biomet/asac067>, Crommen et al. (2024) <doi:10.1007/s11749-023-00903-9>,
Deresa and Van Keilegom (2024) <doi:10.1080/01621459.2022.2161387>, Willems et al. (2025)
<doi:10.48550/arXiv.2403.11860>, Ding and Van Keilegom (2025) and D'Haen et al. (2025)
<doi:10.1007/s10985-025-09647-0>.
Author: Ilias Willems [aut] ,
Gilles Crommen [aut] ,
Negera Wakgari Deresa [aut, cre] ,
Jie Ding [aut] ,
Claudia Czado [aut] ,
Myrthe D'Haen [aut] ,
Ingrid Van Keilegom [aut]
Maintainer: Negera Wakgari Deresa <negera.deresa@gmail.com>
Diff between depCensoring versions 0.1.8 dated 2025-11-06 and 0.1.10 dated 2026-04-13
depCensoring-0.1.10/depCensoring/DESCRIPTION | 11 depCensoring-0.1.10/depCensoring/MD5 | 59 depCensoring-0.1.10/depCensoring/NAMESPACE | 5 depCensoring-0.1.10/depCensoring/NEWS.md | 3 depCensoring-0.1.10/depCensoring/R/BoundingCovariateEffects.R | 879 ++++++++-- depCensoring-0.1.10/depCensoring/R/CopulaCoxPHmodel_BootstrapMethods.R | 1 depCensoring-0.1.10/depCensoring/R/FitCopulaBasedCoxPHmodels.R | 3 depCensoring-0.1.10/depCensoring/R/FullyParametricCopulas.R | 20 depCensoring-0.1.10/depCensoring/R/NonparametricTransformation.R | 40 depCensoring-0.1.10/depCensoring/R/QRdepcens.R | 4 depCensoring-0.1.10/depCensoring/R/SemiParametricCopulawithoutCovariates.R | 44 depCensoring-0.1.10/depCensoring/man/ParamCop.Rd | 2 depCensoring-0.1.10/depCensoring/man/pi.surv.Rd | 4 depCensoring-0.1.8/depCensoring/man/Bvprob.Rd |only depCensoring-0.1.8/depCensoring/man/Distance.Rd |only depCensoring-0.1.8/depCensoring/man/Kernel.Rd |only depCensoring-0.1.8/depCensoring/man/Likelihood.Parametric.Rd |only depCensoring-0.1.8/depCensoring/man/Likelihood.Profile.Kernel.Rd |only depCensoring-0.1.8/depCensoring/man/Likelihood.Profile.Solve.Rd |only depCensoring-0.1.8/depCensoring/man/Likelihood.Semiparametric.Rd |only depCensoring-0.1.8/depCensoring/man/LongNPT.Rd |only depCensoring-0.1.8/depCensoring/man/Parameters.Constraints.Rd |only depCensoring-0.1.8/depCensoring/man/ScoreEqn.Rd |only depCensoring-0.1.8/depCensoring/man/SearchIndicate.Rd |only depCensoring-0.1.8/depCensoring/man/SolveH.Rd |only depCensoring-0.1.8/depCensoring/man/SolveHt1.Rd |only depCensoring-0.1.8/depCensoring/man/SolveScore.Rd |only depCensoring-0.1.8/depCensoring/man/SurvDC.GoF.Rd |only depCensoring-0.1.8/depCensoring/man/SurvFunc.CG.Rd |only depCensoring-0.1.8/depCensoring/man/SurvFunc.KM.Rd |only depCensoring-0.1.8/depCensoring/man/SurvMLE.Likelihood.Rd |only depCensoring-0.1.8/depCensoring/man/SurvMLE.Rd |only depCensoring-0.1.8/depCensoring/man/boot.nonparTrans.Rd |only depCensoring-0.1.8/depCensoring/man/control.arguments.Rd |only depCensoring-0.1.8/depCensoring/man/copdist.Archimedean.Rd |only depCensoring-0.1.8/depCensoring/man/cophfunc.Rd |only depCensoring-0.1.8/depCensoring/man/coppar.to.ktau.Rd |only depCensoring-0.1.8/depCensoring/man/generator.Archimedean.Rd |only depCensoring-0.1.8/depCensoring/man/ktau.to.coppar.Rd |only depCensoring-0.1.8/depCensoring/man/loglike.clayton.unconstrained.Rd |only depCensoring-0.1.8/depCensoring/man/loglike.frank.unconstrained.Rd |only depCensoring-0.1.8/depCensoring/man/loglike.gaussian.unconstrained.Rd |only depCensoring-0.1.8/depCensoring/man/loglike.gumbel.unconstrained.Rd |only depCensoring-0.1.8/depCensoring/man/loglike.indep.unconstrained.Rd |only depCensoring-0.1.8/depCensoring/man/optimlikelihood.Rd |only depCensoring-0.1.8/depCensoring/man/parafam.d.Rd |only depCensoring-0.1.8/depCensoring/man/parafam.p.Rd |only depCensoring-0.1.8/depCensoring/man/parafam.trunc.Rd |only 48 files changed, 839 insertions(+), 236 deletions(-)
Title: Shared Utilities to Extend the 'teal' Modules
Description: Provides decorators, transformators, and utility functions
to extend the 'teal' framework for interactive data analysis
applications. Implements methods for data visualization enhancement,
statistical data transformations, and workflow integration tools.
Designed to support clinical and pharmaceutical research workflows
within the 'teal' ecosystem through modular and reusable components.
Author: Nadia Abraham [aut],
Chanchal Bhalla [aut],
Peyman Eshghi [aut, cre],
Pranith Gourisetty [aut],
Sohan Lal [aut],
Przemyslaw Posiadala [aut],
Alina Tselinina [aut],
Konrad Pagacz [aut],
PHUSE [cph]
Maintainer: Peyman Eshghi <peymaan.es@gmail.com>
Diff between uteals versions 0.0.2 dated 2026-02-17 and 0.0.3 dated 2026-04-13
DESCRIPTION | 10 MD5 | 36 +- NAMESPACE | 86 ++++- NEWS.md | 7 R/create_rel_risk_transformator.R | 12 R/forest_plot_decorator.R | 7 R/ggplot_decorator.R | 49 ++- R/merge_levels_transformator.R | 485 ++++++++++++------------------ R/or_filtering_transformator.R | 11 R/or_filtering_transformator_view_model.R | 2 R/patchwork_plot_decorator.R | 4 R/r_access_utilities.R | 11 R/title_footer_decorator.R | 7 R/watermark_decorator.R |only man/create_rel_risk_transformator.Rd | 7 man/extract_modules_to_yaml.Rd | 5 man/ggplot_decorator.Rd | 33 +- man/merge_levels_transformator.Rd | 18 - man/uteals-package.Rd | 4 man/watermark_decorator.Rd |only 20 files changed, 439 insertions(+), 355 deletions(-)
Title: Lagrangian Multiplier Smoothing Splines for Smooth Function
Estimation
Description: Implements Lagrangian multiplier smoothing splines for flexible
nonparametric regression and function estimation. Provides tools for fitting,
prediction, and inference using a constrained optimization approach to
enforce smoothness. Supports generalized linear models, Weibull accelerated
failure time (AFT) models, quadratic programming constraints, and
customizable working-correlation structures, with options for parallel
fitting. The core spline construction builds on Ezhov et al. (2018)
<doi:10.1515/jag-2017-0029>. Quadratic-programming and
SQP details follow Goldfarb & Idnani (1983) <doi:10.1007/BF02591962> and
Nocedal & Wright (2006) <doi:10.1007/978-0-387-40065-5>. For smoothing
spline and penalized spline background, see Wahba (1990)
<doi:10.1137/1.9781611970128> and Wood (2017)
<doi:10.1201/9781315370279>. For variance-component and correlation-parameter
estimation, see Searle et al. (2006) <ISBN:978-0470009598>. The default
multivaria [...truncated...]
Author: Matthew Davis [aut, cre]
Maintainer: Matthew Davis <matthewlouisdavis@gmail.com>
Diff between lgspline versions 1.0.1 dated 2026-03-15 and 1.0.2 dated 2026-04-13
lgspline-1.0.1/lgspline/man/compute_dW_dlambda_wrapper.Rd |only lgspline-1.0.2/lgspline/DESCRIPTION | 6 lgspline-1.0.2/lgspline/MD5 | 80 lgspline-1.0.2/lgspline/NAMESPACE | 1 lgspline-1.0.2/lgspline/NEWS.md | 6 lgspline-1.0.2/lgspline/R/HelperFunctions.R | 9289 +++++----- lgspline-1.0.2/lgspline/R/blockfit_solve.R | 7 lgspline-1.0.2/lgspline/R/get_B.R | 417 lgspline-1.0.2/lgspline/R/lgspline-details.R | 303 lgspline-1.0.2/lgspline/R/lgspline.R | 181 lgspline-1.0.2/lgspline/R/make_partitions.R | 856 lgspline-1.0.2/lgspline/R/methods.R | 10 lgspline-1.0.2/lgspline/R/tune_Lambda.R | 798 lgspline-1.0.2/lgspline/inst/WORDLIST | 325 lgspline-1.0.2/lgspline/man/Details.Rd | 292 lgspline-1.0.2/lgspline/man/compute_dG_dlambda.Rd | 13 lgspline-1.0.2/lgspline/man/dot-bf_case_gauss_gee.Rd | 8 lgspline-1.0.2/lgspline/man/dot-build_tuning_env.Rd | 10 lgspline-1.0.2/lgspline/man/dot-compute_dhat_diag.Rd |only lgspline-1.0.2/lgspline/man/dot-compute_gcvu.Rd | 26 lgspline-1.0.2/lgspline/man/dot-compute_gcvu_gradient.Rd | 25 lgspline-1.0.2/lgspline/man/dot-compute_hat_diag.Rd |only lgspline-1.0.2/lgspline/man/dot-compute_loocv.Rd |only lgspline-1.0.2/lgspline/man/dot-compute_loocv_gradient.Rd |only lgspline-1.0.2/lgspline/man/dot-compute_tuning_delta.Rd | 2 lgspline-1.0.2/lgspline/man/dot-compute_tuning_predictions.Rd | 4 lgspline-1.0.2/lgspline/man/dot-compute_tuning_residuals.Rd | 8 lgspline-1.0.2/lgspline/man/dot-damped_bfgs.Rd | 24 lgspline-1.0.2/lgspline/man/dot-fit_coefficients.Rd | 11 lgspline-1.0.2/lgspline/man/dot-fit_get_B.Rd | 8 lgspline-1.0.2/lgspline/man/dot-get_B_gee_glm_woodbury.Rd | 32 lgspline-1.0.2/lgspline/man/dot-get_B_gee_woodbury.Rd | 20 lgspline-1.0.2/lgspline/man/dot-lagrangian_project_woodbury.Rd | 42 lgspline-1.0.2/lgspline/man/dot-tune_grid_search.Rd | 8 lgspline-1.0.2/lgspline/man/dot-woodbury_decompose_V.Rd | 60 lgspline-1.0.2/lgspline/man/dot-woodbury_halfsqrt_components.Rd | 45 lgspline-1.0.2/lgspline/man/dot-woodbury_redecompose_weighted.Rd | 45 lgspline-1.0.2/lgspline/man/get_2ndDerivPenalty.Rd | 2 lgspline-1.0.2/lgspline/man/get_B.Rd | 14 lgspline-1.0.2/lgspline/man/lgspline.Rd | 108 lgspline-1.0.2/lgspline/man/lgspline.fit.Rd | 42 lgspline-1.0.2/lgspline/man/plot.lgspline.Rd | 7 lgspline-1.0.2/lgspline/man/tune_Lambda.Rd | 126 lgspline-1.0.2/lgspline/tests/testthat/test-tuning-criterion.R |only 44 files changed, 7166 insertions(+), 6095 deletions(-)
Title: Automated Mendelian Randomization Workflows and Visualizations
Description: Provides tools to summarize, analyze, and visualize results
from Mendelian randomization studies using summarized genetic
association data. The package includes functions for generating forest
plots and scatter plots at the single-nucleotide polymorphism
and Mendelian randomization method levels, and for fitting multiple
estimators in a unified workflow, including inverse-variance weighted
estimation, Mendelian randomization Egger regression,
the weighted median estimator, the robust adjusted
profile score, Mendelian randomization pleiotropy residual sum
and outlier, Mendelian randomization with the genotype
recoding invariance property, and a Bayesian horseshoe
method. Related methods are described by Burgess (2013)
<doi:10.1002/gepi.21758>, Bowden (2015) <doi:10.1093/ije/dyv080>,
Bowden (2016) <doi:10.1002/gepi.21965>, Zhao (2020)
<doi:10.1214/19-AOS1866>, Verbanck (2018)
<doi:10.1038/s41588-018-0099-7>, Dudbridge (2025)
<doi:10.1371/journal.pgen.1011 [...truncated...]
Author: Kelin Zhong [aut, cre],
Chia-Ling Kuo [aut]
Maintainer: Kelin Zhong <kelinzhonguconn@gmail.com>
Diff between autoMR versions 1.0.0 dated 2026-04-04 and 1.1.0 dated 2026-04-13
DESCRIPTION | 6 MD5 | 30 R/mr_forest.R | 718 ++++++++++----------- R/mr_forest_class.R | 2 R/mr_scatter_class.R | 4 R/mr_transform.R | 501 ++++++++++---- R/mr_workflows.R | 1474 ++++++++++++++++++++++---------------------- man/GWAS_forest.Rd | 2 man/MR_forest.Rd | 2 man/export_forest_plots.Rd | 2 man/export_scatter_plots.Rd | 2 man/format_mr_input.Rd | 107 ++- man/harmonize_mr_data.Rd | 52 + man/plot_mr_scatter.Rd | 2 man/run_mr_analysis.Rd | 6 man/showplot.Rd | 2 16 files changed, 1614 insertions(+), 1298 deletions(-)
Title: Exploratory Graph Analysis – a Framework for Estimating the
Number of Dimensions in Multivariate Data using Network
Psychometrics
Description: Implements the Exploratory Graph Analysis (EGA) framework for dimensionality
and psychometric assessment. EGA estimates the number of dimensions in
psychological data using network estimation methods and community detection
algorithms. A bootstrap method is provided to assess the stability of dimensions
and items. Fit is evaluated using the Entropy Fit family of indices. Unique
Variable Analysis evaluates the extent to which items are locally dependent (or
redundant). Network loadings provide similar information to factor loadings and
can be used to compute network scores. A bootstrap and permutation approach are
available to assess configural and metric invariance. Hierarchical structures
can be detected using Hierarchical EGA. Time series and intensive longitudinal
data can be analyzed using Dynamic EGA, supporting individual, group, and
population level assessments.
Author: Hudson Golino [aut, cre] ,
Alexander Christensen [aut] ,
Robert Moulder [ctb] ,
Luis E. Garrido [ctb] ,
Laura Jamison [ctb] ,
Dingjing Shi [ctb] ,
John Fox [cph, ctb] ,
Yves Rosseel [cph, ctb] ,
Alexander Robitzsch [cph, ctb] ,
David Blackman [ctb] , [...truncated...]
Maintainer: Hudson Golino <hfg9s@virginia.edu>
Diff between EGAnet versions 2.4.0 dated 2025-12-06 and 2.4.1 dated 2026-04-13
EGAnet-2.4.0/EGAnet/R/frobenius.R |only EGAnet-2.4.0/EGAnet/R/network.regularization.R |only EGAnet-2.4.0/EGAnet/man/frobenius.Rd |only EGAnet-2.4.0/EGAnet/man/network.regularization.Rd |only EGAnet-2.4.1/EGAnet/DESCRIPTION | 36 +- EGAnet-2.4.1/EGAnet/MD5 | 45 +- EGAnet-2.4.1/EGAnet/NAMESPACE | 4 EGAnet-2.4.1/EGAnet/NEWS | 12 EGAnet-2.4.1/EGAnet/R/EGM.optimizations.R | 14 EGAnet-2.4.1/EGAnet/R/bootEGA.R | 19 - EGAnet-2.4.1/EGAnet/R/dynEGA.R | 356 ++++++++++----------- EGAnet-2.4.1/EGAnet/R/dynamic.network.compare.R | 15 EGAnet-2.4.1/EGAnet/R/helpers.R | 22 - EGAnet-2.4.1/EGAnet/R/invariance.R | 13 EGAnet-2.4.1/EGAnet/R/itemStability.R | 6 EGAnet-2.4.1/EGAnet/R/known.graph.R | 6 EGAnet-2.4.1/EGAnet/R/network.compare.R | 6 EGAnet-2.4.1/EGAnet/R/network.confusion.R |only EGAnet-2.4.1/EGAnet/R/regularization.R | 151 +++++--- EGAnet-2.4.1/EGAnet/R/sF.R |only EGAnet-2.4.1/EGAnet/R/simEGM.R | 89 ++++- EGAnet-2.4.1/EGAnet/inst/CITATION | 5 EGAnet-2.4.1/EGAnet/inst/COPYRIGHTS |only EGAnet-2.4.1/EGAnet/man/dynamic.network.compare.Rd | 2 EGAnet-2.4.1/EGAnet/man/network.compare.Rd | 2 EGAnet-2.4.1/EGAnet/man/network.confusion.Rd |only EGAnet-2.4.1/EGAnet/man/sF.Rd |only EGAnet-2.4.1/EGAnet/man/simEGM.Rd | 2 28 files changed, 473 insertions(+), 332 deletions(-)
Title: Rendering Font into 'data.frame'
Description: Extract glyph information from font data, and translate the
outline curves to flattened paths or tessellated polygons. The converted
data is returned as a 'data.frame' in easy-to-plot format.
Author: Hiroaki Yutani [aut, cre] ,
The authors of the dependency Rust crates [ctb]
Maintainer: Hiroaki Yutani <yutani.ini@gmail.com>
Diff between string2path versions 0.2.2 dated 2025-03-25 and 0.3.0 dated 2026-04-13
DESCRIPTION | 15 LICENSE.note | 295 +++++++++-- MD5 | 54 +- NEWS.md | 12 R/000-wrappers.R | 28 - R/dump_fontdb.R | 3 R/main.R | 69 ++ configure | 42 + configure.win | 7 inst/AUTHORS | 170 +++++- man/dump_fontdb.Rd | 3 man/string2path.Rd | 8 src/Makevars.in | 8 src/Makevars.win.in | 1 src/init.c | 41 - src/rust/Cargo.lock | 432 ++++++++++++++--- src/rust/Cargo.toml | 12 src/rust/api.h | 6 src/rust/src/builder.rs | 204 ++------ src/rust/src/font.rs | 409 +++++++++++----- src/rust/src/into_fill_stroke.rs | 107 +--- src/rust/src/into_path.rs | 112 ++-- src/rust/src/lib.rs | 147 ++--- src/rust/src/result.rs | 18 src/rust/vendor.tar.xz |binary tests/testthat/_snaps/snapshot.md | 88 +-- tests/testthat/_snaps/snapshot/path-and-fill-match.svg | 220 ++++---- tools/configure.R | 2 28 files changed, 1613 insertions(+), 900 deletions(-)
Title: Automated Item Removal Strategies for Exploratory Factor
Analysis
Description: Automates the identification and comparative evaluation of
item-removal strategies in exploratory factor analysis, producing
transparent summaries (explained variance, loading ranges, reliability)
to support comfortable, reproducible decisions. The criteria are
based on best practices and established heuristics (e.g., Costello &
Osborne (2005) <doi:10.7275/jyj1-4868>, Howard (2016)
<doi:10.1080/10447318.2015.1087664>). Includes flexible thresholds for
factor loadings (min_loading) and cross-loading differences (loading_diff).
Author: Ahmet Caliskan [aut, cre],
Abdullah Faruk Kilic [aut]
Maintainer: Ahmet Caliskan <ahmetcaliskan1987@gmail.com>
Diff between ItemRest versions 0.2.3 dated 2025-10-09 and 0.2.4 dated 2026-04-13
DESCRIPTION | 9 - MD5 | 20 ++- NEWS.md | 8 - R/itemrest_core.R | 61 +++++++++--- inst/doc/ItemRest_Demonstration.R | 9 - inst/doc/ItemRest_Demonstration.Rmd | 9 - inst/doc/ItemRest_Demonstration.html | 177 ++++++++++++++--------------------- man/howard.Rd |only man/identify_problem_items.Rd |only man/itemrest.Rd | 8 + man/test_removals.Rd | 12 ++ vignettes/ItemRest_Demonstration.Rmd | 9 - 12 files changed, 174 insertions(+), 148 deletions(-)
Title: Tools for Causal Discovery on Observational Data
Description: Tools for causal structure learning from observational data, with emphasis on temporally
ordered variables. The package implements the Temporal Peter–Clark (TPC) algorithm
(Petersen, Osler & Ekstrøm, 2021; <doi:10.1093/aje/kwab087>), the Temporal Greedy
Equivalence Search (TGES) algorithm (Larsen, Ekstrøm & Petersen, 2025; <doi:10.48550/arXiv.2502.06232>)
and Temporal Fast Causal Inference (TFCI). It provides a unified framework for specifying background
knowledge, which can be incorporated into the implemented algorithms from the R packages 'bnlearn'
(Scutari, 2010; <doi:10.18637/jss.v035.i03>) and 'pcalg' (Kalish et al., 2012; <doi:10.18637/jss.v047.i11>),
as well as the Java library 'Tetrad' (Scheines et al., 1998; <doi:10.1207/s15327906mbr3301_3>).
The package further includes utilities for visualization, comparison, and evaluation of graph
structures, facilitating performance evaluation and methodological studies.
Author: Bjarke Hautop Kristensen [aut, cre],
Frederik Fabricius-Bjerre [aut],
Anne Helby Petersen [aut],
Claus Thorn Ekstroem [aut],
Tobias Ellegaard Larsen [ctb]
Maintainer: Bjarke Hautop Kristensen <bjarke.kristensen@sund.ku.dk>
Diff between causalDisco versions 1.0.1 dated 2026-02-24 and 1.1.0 dated 2026-04-13
causalDisco-1.0.1/causalDisco/inst/doc/causal-discovery.Rmd |only causalDisco-1.0.1/causalDisco/inst/doc/causalDisco.Rmd |only causalDisco-1.0.1/causalDisco/inst/doc/knowledge.Rmd |only causalDisco-1.0.1/causalDisco/inst/doc/new-algorithm.Rmd |only causalDisco-1.0.1/causalDisco/inst/doc/visualization.Rmd |only causalDisco-1.0.1/causalDisco/inst/roxygen-examples/is_after-example.R |only causalDisco-1.0.1/causalDisco/vignettes/causal-discovery.Rmd |only causalDisco-1.0.1/causalDisco/vignettes/causalDisco.Rmd |only causalDisco-1.0.1/causalDisco/vignettes/knowledge.Rmd |only causalDisco-1.0.1/causalDisco/vignettes/new-algorithm.Rmd |only causalDisco-1.0.1/causalDisco/vignettes/visualization.Rmd |only causalDisco-1.1.0/causalDisco/DESCRIPTION | 53 causalDisco-1.1.0/causalDisco/MD5 | 643 - causalDisco-1.1.0/causalDisco/NAMESPACE | 228 causalDisco-1.1.0/causalDisco/NEWS.md | 72 causalDisco-1.1.0/causalDisco/R/aaa-globals.R | 12 causalDisco-1.1.0/causalDisco/R/aaa-iamb-family.R | 74 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causalDisco-1.1.0/causalDisco/R/edges.R | 86 causalDisco-1.1.0/causalDisco/R/engine-registry.R | 18 causalDisco-1.1.0/causalDisco/R/extend-causaldisco-algs.R | 169 causalDisco-1.1.0/causalDisco/R/fci.R | 205 causalDisco-1.1.0/causalDisco/R/ges.R | 193 causalDisco-1.1.0/causalDisco/R/gfci.R | 162 causalDisco-1.1.0/causalDisco/R/grasp-fci.R | 171 causalDisco-1.1.0/causalDisco/R/grasp.R | 170 causalDisco-1.1.0/causalDisco/R/gs.R | 145 causalDisco-1.1.0/causalDisco/R/hc.R | 149 causalDisco-1.1.0/causalDisco/R/iamb-family.R | 378 causalDisco-1.1.0/causalDisco/R/install-tetrad.R | 733 - causalDisco-1.1.0/causalDisco/R/knowledge-conversions.R | 805 - causalDisco-1.1.0/causalDisco/R/knowledge-helpers.R | 754 - causalDisco-1.1.0/causalDisco/R/knowledge-manipulation.R | 574 causalDisco-1.1.0/causalDisco/R/knowledge-verbs.R | 1516 +- causalDisco-1.1.0/causalDisco/R/knowledge.R | 1536 +- causalDisco-1.1.0/causalDisco/R/make-tikz-helpers.R | 760 - causalDisco-1.1.0/causalDisco/R/make-tikz.R | 792 - 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causalDisco-1.1.0/causalDisco/inst/roxygen-examples/boss-fci-example.R | 110 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/cast_obj-example.R | 44 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/causalDisco-search-example.R | 140 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/check_args-example.R | 198 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/create_adj_matrix_from_list_from_adj-example.R | 26 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/current_heap_gb-example.R | 10 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/default_heap-example.R | 60 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/deparse_knowledge-example.R | 42 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dir_test-example.R | 44 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/disco-example.R | 50 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/disco_method-example.R | 274 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-add_edges-example.R | 28 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-build_knowledge_from_order-example.R | 20 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-check_if_pkgs_are_installed-example.R | 50 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-edge_verb-example.R | 54 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-formula_vars-example.R | 22 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-new_knowledge-example.R | 16 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-pcalg_constraints_from_knowledge-example.R | 34 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-read_line-example.R | 12 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-tier_index-example.R | 26 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-validate_forbidden_required-example.R | 38 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-validate_tier_rule-example.R | 40 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/dot-vars_from_spec-example.R | 30 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/fci-example.R | 136 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/find_adjacencies-example.R | 16 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/forbid_tier_violations-example.R | 34 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/ges-example.R | 112 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/get_tiers-example.R | 16 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/gfci-example.R | 116 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/grasp-example.R | 124 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/grasp_fci-example.R | 126 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/gs-example.R | 64 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/hc-example.R | 76 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/iamb-family-example.R | 112 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/init_java-example.R | 8 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/is_knowledge-example.R | 6 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/knowledge-example.R | 294 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/knowledge_verbs-example.R | 88 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/make-tikz-example.R | 156 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/make_suff_stat-example.R | 14 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/order_restrict_amat_cpdag-example.R | 60 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/order_restrict_pag_skel-example.R | 118 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/order_restrict_sepset-example.R | 118 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/parse_heap_gb-example.R | 10 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/pc-example.R | 180 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/pcalg-search-example.R | 92 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/pcalg_search-example.R | 54 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/plus-knowledge-example.R | 98 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/rdata_to_tetrad_data-example.R | 58 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/remove_from_knowledge-example.R | 44 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/reorder_tiers-example.R | 28 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/reposition_tier-example.R | 28 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/seq_tiers-example.R | 18 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/sp-fci-example.R | 110 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/tabu-example.R | 76 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/tbdeu-example.R | 124 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/tbic-example.R | 76 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/tetrad-search-example.R | 74 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/tetrad_graph-example.R | 28 causalDisco-1.1.0/causalDisco/inst/roxygen-examples/tfci-example.R | 44 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causalDisco-1.1.0/causalDisco/tests/testthat/test-extend-causaldisco-algs.R | 230 causalDisco-1.1.0/causalDisco/tests/testthat/test-fci.R | 542 causalDisco-1.1.0/causalDisco/tests/testthat/test-ges.R | 396 causalDisco-1.1.0/causalDisco/tests/testthat/test-gfci.R | 120 causalDisco-1.1.0/causalDisco/tests/testthat/test-grasp-fci.R | 124 causalDisco-1.1.0/causalDisco/tests/testthat/test-grasp.R | 88 causalDisco-1.1.0/causalDisco/tests/testthat/test-gs.R | 31 causalDisco-1.1.0/causalDisco/tests/testthat/test-hc.R | 45 causalDisco-1.1.0/causalDisco/tests/testthat/test-iamb-family.R | 104 causalDisco-1.1.0/causalDisco/tests/testthat/test-init-java.R | 50 causalDisco-1.1.0/causalDisco/tests/testthat/test-install-tetrad.R | 494 causalDisco-1.1.0/causalDisco/tests/testthat/test-java-rdata-utils.R | 346 causalDisco-1.1.0/causalDisco/tests/testthat/test-knowledge-conversions.R | 490 causalDisco-1.1.0/causalDisco/tests/testthat/test-knowledge-manipulation.R | 350 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Title: Bayesian Longitudinal Regularized Quantile Mixed Model
Description: With high-dimensional omics features, repeated measure ANOVA leads to longitudinal gene-environment interaction studies that have intra-cluster correlations, outlying observations and structured sparsity arising from the ANOVA design. In this package, we have developed robust sparse Bayesian mixed effect models tailored for the above studies (Fan et al. (2025) <doi:10.1093/jrsssc/qlaf027>). An efficient Gibbs sampler has been developed to facilitate fast computation. The Markov chain Monte Carlo algorithms of the proposed and alternative methods are efficiently implemented in 'C++'. The development of this software package and the associated statistical methods have been partially supported by an Innovative Research Award from Johnson Cancer Research Center, Kansas State University.
Author: Kun Fan [aut, cre],
Shejuty Devnath [aut],
Cen Wu [aut]
Maintainer: Kun Fan <fzt0428@gmail.com>
Diff between mixedBayes versions 0.2.3 dated 2026-03-16 and 0.2.4 dated 2026-04-13
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Title: Topological Data Analysis: Mapper Algorithm
Description: The Mapper algorithm from Topological Data Analysis, the steps are as follows 1. Define a filter (lens) function on the data. 2. Perform clustering within each level set. 3. Generate a complex from the clustering results.
Author: ChiChien Wang [aut, cre, trl],
Paul Pearson [ctb],
Daniel Muellner [ctb],
Gurjeet Singh [ctb]
Maintainer: ChiChien Wang <kennywang2003@gmail.com>
Diff between MapperAlgo versions 1.0.9 dated 2026-02-02 and 1.1.0 dated 2026-04-13
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Title: EEMD Based LSTM Model for Time Series Forecasting
Description: Forecasting univariate time series with ensemble empirical mode decomposition (EEMD) with long short-term memory (LSTM). For method details see Jaiswal, R. et al. (2022). <doi:10.1007/s00521-021-06621-3>.
Author: Kapil Choudhary [aut],
Girish Kumar Jha [aut, ths, ctb],
Ronit Jaiswal [ctb, cre],
Rajeev Ranjan Kumar [ctb]
Maintainer: Ronit Jaiswal <ronitjaiswal2912@gmail.com>
This is a re-admission after prior archival of version 0.1.0 dated 2022-09-26
Diff between EEMDlstm versions 0.1.0 dated 2022-09-26 and 1.0.1 dated 2026-04-13
DESCRIPTION | 20 ++++++++++---------- MD5 | 6 +++--- man/eemdLSTM.Rd | 2 +- man/emdLSTM.Rd | 2 +- 4 files changed, 15 insertions(+), 15 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-08 0.10
2019-02-12 0.9.4-2
2019-02-07 0.9.4
2016-10-31 0.9.2
2016-10-10 0.9.1
2016-09-01 0.9
2015-06-30 0.1
2014-06-06 0.0-2
2014-02-20 0.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-20 0.0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-01-14 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-03-06 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-29 0.4.1
2024-03-13 0.3.3
2022-05-17 0.3.1
2021-07-29 0.3.0
2021-04-28 0.2.7
2020-07-05 0.2.6
Title: Custom Gov Style Inputs for Shiny
Description: Collection of 'shiny' application styling that are based on
the GOV.UK Design System. See
<https://design-system.service.gov.uk/components/> for details.
Author: Ross Wyatt [aut],
Cam Race [aut, cre],
Sarah Wong [aut],
Richard Bielby [ctb],
Charlotte Foster [ctb],
Jeni Martin [ctb],
Andrew Baker [ctb]
Maintainer: Cam Race <camrace8@gmail.com>
Diff between shinyGovstyle versions 0.1.1 dated 2026-01-08 and 0.2.0 dated 2026-04-13
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Title: Methods for Optimizing Scales of Effect
Description: A tool for optimizing scales of effect when modeling ecological processes in space. Specifically, the scale parameter of a distance-weighted kernel distribution is identified for all environmental layers included in the model. Includes functions to assist in model selection, model evaluation, efficient transformation of raster surfaces using fast Fourier transformation, and projecting models. For more details see Peterman (2026) <doi:10.1007/s10980-025-02267-x>.
Author: Bill Peterman [aut, cre]
Maintainer: Bill Peterman <Peterman.73@osu.edu>
Diff between multiScaleR versions 0.5.0 dated 2026-03-26 and 0.6.6 dated 2026-04-13
DESCRIPTION | 11 MD5 | 77 - NAMESPACE | 242 ++-- NEWS | 36 R/diagnostics.R |only R/kernel_dist.R | 27 R/kernel_prep.R | 46 R/kernel_scale.raster.R | 51 - R/kernel_scale_fn.R | 305 ++++-- R/marginal_effects.R | 226 +++- R/multiScale_optim.R | 169 ++- R/plot_method.R | 17 R/print_methods.R | 83 + R/profile_scale_ci.R |only R/profile_sigma.R |only R/scale_center_raster.R | 24 R/sim_dat.R | 31 R/sim_dat_unmarked.R | 41 R/validation_helpers.R |only build/vignette.rds |binary inst/doc/multiScaleR_Guide.R | 55 - inst/doc/multiScaleR_Guide.Rmd | 260 ++++- inst/doc/multiScaleR_Guide.html | 1482 ++++++++++++++++++------------ inst/doc/quickstart.R |only inst/doc/quickstart.Rmd |only inst/doc/quickstart.html |only inst/doc/spatial_projection_clamping.R | 10 inst/doc/spatial_projection_clamping.Rmd | 191 ++- inst/doc/spatial_projection_clamping.html | 1233 +++++++++++++++--------- man/diagnostics.Rd |only man/fft_convolution.Rd | 48 man/kernel_scale.raster.Rd | 206 ++-- man/kernel_scale_fn.Rd | 85 - man/multiScale_optim.Rd | 300 +++--- man/plot.sigma_profile.Rd |only man/profile_sigma.Rd |only man/summary.multiScaleR.Rd | 43 tests |only vignettes/multiScaleR_Guide.Rmd | 260 ++++- vignettes/quickstart.Rmd |only vignettes/spatial_projection_clamping.Rmd | 191 ++- 41 files changed, 3787 insertions(+), 1963 deletions(-)
Title: Sample Size and Power Calculation for Bayesian Testing with
Bayes Factor
Description: The goal of 'BayesPower' is to provide tools for Bayesian sample size determination and power analysis across a range of common hypothesis testing scenarios using Bayes factors. The main function, BayesPower_BayesFactor(), launches an interactive 'shiny' application for performing these analyses. The application also provides command-line code for reproducibility. Details of the methods are described in the tutorial by Wong, Pawel, and Tendeiro (2025) <doi:10.31234/osf.io/pgdac_v3>.
Author: Tsz Keung Wong [aut, cre],
Samuel Pawel [aut],
Jorge Tendeiro [aut]
Maintainer: Tsz Keung Wong <t.k.wong3004@gmail.com>
Diff between BayesPower versions 1.0.3 dated 2026-03-16 and 1.0.4 dated 2026-04-13
DESCRIPTION | 6 MD5 | 41 +-- NEWS.md |only R/BF_S3class.r | 22 - R/BF_app_backend.R | 2 R/BF_app_frontend.r | 2 R/BF_users_functions.r | 390 ++++++++++++++++++++--------------- inst/report_templates/report_bin.Rmd | 8 man/BF10.bin.test.Rd | 2 man/BF10.cor.Rd | 4 man/BF10.f.test.Rd | 4 man/BF10.props.Rd | 2 man/BF10.ttest.OneSample.Rd | 2 man/BFpower.bin.Rd | 57 +++-- man/BFpower.cor.Rd | 51 ++-- man/BFpower.f.test.Rd | 51 ++-- man/BFpower.props.Rd | 56 +++-- man/BFpower.ttest.OneSample.Rd | 69 +++--- man/BFpower.ttest.TwoSample.Rd | 62 +++-- man/plot.BFpower.Rd | 7 man/print.BFpower.Rd | 4 man/print.BFvalue.Rd | 4 22 files changed, 483 insertions(+), 363 deletions(-)
More information about SelectBoost.quantile at CRAN
Permanent link
Title: Mappable Vector Library for Handling Large Datasets
Description: Mappable vector library provides convenient way to access large datasets. Use all of your data at once, with few limits. Memory mapped data can be shared between multiple R processes. Access speed depends on storage medium, so solid state drive is recommended, preferably with PCI Express (or M.2 nvme) interface or a fast network file system. The data is memory mapped into R and then accessed using usual R list and array subscription operators. Convenience functions are provided for merging, grouping and indexing large vectors and data.frames. The layout of underlying MVL files is optimized for large datasets. The vectors are stored to guarantee alignment for vector intrinsics after memory map. The package is built on top of libMVL, which can be used as a standalone C library. libMVL has simple C API making it easy to interchange datasets with outside programs. Large MVL datasets are distributed via Academic Torrents <https://academictorrents.com/collection/mvl-datasets>.
Author: Vladimir Dergachev [aut, cre]
Maintainer: Vladimir Dergachev <support@altumrete.com>
Diff between RMVL versions 1.1.0.2 dated 2025-09-23 and 1.1.0.3 dated 2026-04-13
RMVL-1.1.0.2/RMVL/man/print.MVL_INDEX.Rd |only RMVL-1.1.0.3/RMVL/DESCRIPTION | 8 ++++---- RMVL-1.1.0.3/RMVL/MD5 | 3 +-- 3 files changed, 5 insertions(+), 6 deletions(-)
Title: Ordered Homogeneity Pursuit Lasso for Group Variable Selection
Description: Ordered homogeneity pursuit lasso (OHPL)
algorithm for group variable selection proposed in Lin et al. (2017)
<DOI:10.1016/j.chemolab.2017.07.004>. The OHPL method exploits the
homogeneity structure in high-dimensional data and enjoys the
grouping effect to select groups of important variables
automatically. This feature makes it particularly useful for
high-dimensional datasets with strongly correlated variables,
such as spectroscopic data.
Author: You-Wu Lin [aut],
Nan Xiao [aut, cre]
Maintainer: Nan Xiao <me@nanx.me>
Diff between OHPL versions 1.4.1 dated 2024-07-20 and 1.4.2 dated 2026-04-13
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 6 ++++++ R/OHPL.sim.R | 2 -- build/partial.rdb |binary man/OHPL.sim.Rd | 3 --- 6 files changed, 16 insertions(+), 15 deletions(-)
Title: AI Screening Tools in R for Systematic Reviewing
Description: Provides functions to conduct title and abstract screening in systematic reviews using large language models, such as the Generative Pre-trained Transformer (GPT) models from 'OpenAI' <https://developers.openai.com/>. These functions can enhance the quality of title and abstract screenings while reducing the total screening time significantly. In addition, the package includes tools for quality assessment of title and abstract screenings, as described in Vembye, Christensen, Mølgaard, and Schytt (2025) <DOI:10.1037/met0000769>.
Author: Mikkel H. Vembye [aut, cre] ,
Thomas Olsen [aut]
Maintainer: Mikkel H. Vembye <mikkel.vembye@gmail.com>
Diff between AIscreenR versions 0.2.0 dated 2025-08-18 and 0.3.0 dated 2026-04-13
AIscreenR-0.2.0/AIscreenR/inst/doc/Using-GPT-API-Models-For-Screening.Rmd |only AIscreenR-0.2.0/AIscreenR/vignettes/Using-GPT-API-Models-For-Screening.Rmd |only AIscreenR-0.2.0/AIscreenR/vignettes/helper-stuff |only AIscreenR-0.3.0/AIscreenR/DESCRIPTION | 23 AIscreenR-0.3.0/AIscreenR/MD5 | 137 AIscreenR-0.3.0/AIscreenR/NAMESPACE | 14 AIscreenR-0.3.0/AIscreenR/NEWS.md | 45 AIscreenR-0.3.0/AIscreenR/R/api_key_functions.R | 241 AIscreenR-0.3.0/AIscreenR/R/approximate_price.R | 325 - AIscreenR-0.3.0/AIscreenR/R/data.R | 134 AIscreenR-0.3.0/AIscreenR/R/fine_tune_data.R | 392 - AIscreenR-0.3.0/AIscreenR/R/function-calling.R | 203 AIscreenR-0.3.0/AIscreenR/R/groq_engine.r |only AIscreenR-0.3.0/AIscreenR/R/misc.func.hidden.price.R | 109 AIscreenR-0.3.0/AIscreenR/R/misc.func.hidden.tabscreen.R | 20 AIscreenR-0.3.0/AIscreenR/R/misc.helpers.R | 383 - AIscreenR-0.3.0/AIscreenR/R/misc.hidden.func.analyzer.R | 154 AIscreenR-0.3.0/AIscreenR/R/misc.inherits.R | 1 AIscreenR-0.3.0/AIscreenR/R/ollama_engine.r |only AIscreenR-0.3.0/AIscreenR/R/print.groq.r |only AIscreenR-0.3.0/AIscreenR/R/rate_limits.R | 276 AIscreenR-0.3.0/AIscreenR/R/report_errors.r |only AIscreenR-0.3.0/AIscreenR/R/sample_references.R | 9 AIscreenR-0.3.0/AIscreenR/R/save_functions.r |only AIscreenR-0.3.0/AIscreenR/R/screen_analyzer.R | 352 - AIscreenR-0.3.0/AIscreenR/R/screen_errors.R | 255 AIscreenR-0.3.0/AIscreenR/R/screen_errors.gpt.R | 661 +- AIscreenR-0.3.0/AIscreenR/R/screen_errors.orginal.R | 860 +- AIscreenR-0.3.0/AIscreenR/R/tabscreen_gpt.R | 1504 ++-- AIscreenR-0.3.0/AIscreenR/R/tabscreen_gpt.original.R | 2214 +++---- AIscreenR-0.3.0/AIscreenR/R/tabscreen_groq.r |only AIscreenR-0.3.0/AIscreenR/R/tabscreen_ollama.r |only AIscreenR-0.3.0/AIscreenR/R/zzz.R | 15 AIscreenR-0.3.0/AIscreenR/build/vignette.rds |binary AIscreenR-0.3.0/AIscreenR/data/disagreements.rda |only AIscreenR-0.3.0/AIscreenR/data/groq_model_prizes.rda |only AIscreenR-0.3.0/AIscreenR/data/model_prizes.rda |binary AIscreenR-0.3.0/AIscreenR/inst/doc/Using-GPT-API-Models-For-Screening.R | 101 AIscreenR-0.3.0/AIscreenR/inst/doc/Using-GPT-API-Models-For-Screening.html | 1511 +--- AIscreenR-0.3.0/AIscreenR/inst/doc/Using-GPT-API-Models-For-Screening.qmd |only AIscreenR-0.3.0/AIscreenR/inst/extdata/comparison-results |only AIscreenR-0.3.0/AIscreenR/inst/extdata/dis_sub.rda |only AIscreenR-0.3.0/AIscreenR/inst/extdata/friends_dat.rds |only AIscreenR-0.3.0/AIscreenR/inst/figures |only AIscreenR-0.3.0/AIscreenR/man/AIscreenR-package.Rd | 4 AIscreenR-0.3.0/AIscreenR/man/approximate_price_gpt.Rd | 14 AIscreenR-0.3.0/AIscreenR/man/create_fine_tune_data.Rd | 112 AIscreenR-0.3.0/AIscreenR/man/disagreements.Rd |only AIscreenR-0.3.0/AIscreenR/man/get_api_key.Rd | 9 AIscreenR-0.3.0/AIscreenR/man/get_api_key_groq.Rd |only AIscreenR-0.3.0/AIscreenR/man/groq_model_prizes.Rd |only AIscreenR-0.3.0/AIscreenR/man/model_prizes.Rd | 8 AIscreenR-0.3.0/AIscreenR/man/print.groq.Rd |only AIscreenR-0.3.0/AIscreenR/man/rate_limits_per_minute.Rd | 36 AIscreenR-0.3.0/AIscreenR/man/read_ris_to_dataframe.Rd |only AIscreenR-0.3.0/AIscreenR/man/report.Rd |only AIscreenR-0.3.0/AIscreenR/man/sample_references.Rd | 9 AIscreenR-0.3.0/AIscreenR/man/save_dataframe_to_ris.Rd |only AIscreenR-0.3.0/AIscreenR/man/save_fine_tune_data.Rd | 152 AIscreenR-0.3.0/AIscreenR/man/screen_errors.Rd | 99 AIscreenR-0.3.0/AIscreenR/man/screen_errors.chatgpt.Rd | 8 AIscreenR-0.3.0/AIscreenR/man/screen_errors.gpt.Rd | 8 AIscreenR-0.3.0/AIscreenR/man/set_api_key.Rd | 10 AIscreenR-0.3.0/AIscreenR/man/tabscreen_gpt.original.Rd | 20 AIscreenR-0.3.0/AIscreenR/man/tabscreen_gpt.tools.Rd | 74 AIscreenR-0.3.0/AIscreenR/man/tabscreen_groq.Rd |only AIscreenR-0.3.0/AIscreenR/man/tabscreen_ollama.Rd |only AIscreenR-0.3.0/AIscreenR/tests/testthat/test-api_key_functions.R | 8 AIscreenR-0.3.0/AIscreenR/tests/testthat/test-approximate_price_gpt.R | 188 AIscreenR-0.3.0/AIscreenR/tests/testthat/test-rate_limits.R | 96 AIscreenR-0.3.0/AIscreenR/tests/testthat/test-report_errors.r |only AIscreenR-0.3.0/AIscreenR/tests/testthat/test-save_functions.r |only AIscreenR-0.3.0/AIscreenR/tests/testthat/test-screen_analyzer.R | 4 AIscreenR-0.3.0/AIscreenR/tests/testthat/test-screen_errors.R | 2 AIscreenR-0.3.0/AIscreenR/tests/testthat/test-tabscreen_gpt.R | 2189 +++---- AIscreenR-0.3.0/AIscreenR/tests/testthat/test-tabscreen_groq.R |only AIscreenR-0.3.0/AIscreenR/tests/testthat/test-tabscreen_ollama.r |only AIscreenR-0.3.0/AIscreenR/vignettes/AIscreenR.bib | 362 - AIscreenR-0.3.0/AIscreenR/vignettes/Using-GPT-API-Models-For-Screening.qmd |only AIscreenR-0.3.0/AIscreenR/vignettes/apa.csl | 3052 +++++----- AIscreenR-0.3.0/AIscreenR/vignettes/helper_stuff |only 81 files changed, 8447 insertions(+), 7956 deletions(-)
Title: Create Custom Plots for Viewing Genetic Association Results
Description: A collection of functions for visualizing,exploring and annotating genetic association results.Association results from multiple traits can be viewed simultaneously along with gene annotation, over the entire genome (Manhattan plot) or in the more detailed regional view.
Author: Thorhildur Juliusdottir [cph, aut, cre],
Andri Stefansson [aut],
Kyle Scott [ctb]
Maintainer: Thorhildur Juliusdottir <totajuliusd@gmail.com>
Diff between topr versions 2.0.3 dated 2026-04-12 and 2.0.4 dated 2026-04-13
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 3 +++ R/foresttopr.R | 2 +- R/topr.R | 1 - 5 files changed, 12 insertions(+), 10 deletions(-)
Title: SNPs-Based Whole Genome Association Studies
Description: Functions to perform most of the common analysis in genome
association studies are implemented. These analyses include descriptive
statistics and exploratory analysis of missing values, calculation of
Hardy-Weinberg equilibrium, analysis of association based on generalized
linear models (either for quantitative or binary traits), and analysis
of multiple SNPs (haplotype and epistasis analysis). Permutation test
and related tests (sum statistic and truncated product) are also
implemented. Max-statistic and genetic risk-allele score exact
distributions are also possible to be estimated. The methods are
described in Gonzalez JR et al., 2007 <doi: 10.1093/bioinformatics/btm025>.
This version includes internal copies of functions from the archived 'haplo.stats'
package to maintain functionality.
Author: Victor Moreno [aut],
Juan R Gonzalez [aut] ,
Dolors Pelegri [aut, cre]
Maintainer: Dolors Pelegri <dolors.pelegri@isglobal.org>
This is a re-admission after prior archival of version 2.1-2 dated 2024-10-28
Diff between SNPassoc versions 2.1-2 dated 2024-10-28 and 2.3.1 dated 2026-04-13
DESCRIPTION | 21 - MD5 | 79 +++ NAMESPACE | 99 +++- R/Ginv.R |only R/dglm.fit.q |only R/geno.count.pairs.q |only R/haplo.binomial.R |only R/haplo.em.control.q |only R/haplo.em.fitter.q |only R/haplo.em.q |only R/haplo.glm.control.q |only R/haplo.glm.q |only R/haplo.inter.fit.R | 16 R/haplo.model.frame.q |only R/haplo.score.glm.q |only R/haplo.score.podds.q |only R/haplo.score.q |only R/haplo.score.slide.q |only R/locus.q |only R/louis.info.q |only R/make.geno.R | 2 R/mf.gindx.q |only R/na.geno.keep.q |only R/plot.haplo.score.q.R |only R/plot.haplo.score.slide.q.R |only R/print.haplo.em.q |only R/printBanner.q |only R/residScaledGlmFit.q |only R/score.sim.control.q |only R/setupGeno.q |only R/varfunc.glm.fit.q |only R/x.sexcheck.q |only build/vignette.rds |binary data/hla.demo.tab |only data/hla.demo.tab.gz |only inst/doc/SNPassoc.R | 38 - inst/doc/SNPassoc.Rmd | 860 +++++++++++++++++++++---------------------- inst/doc/SNPassoc.html | 169 ++++---- man/Ginv.Rd |only man/getGeneSymbol.Rd | 77 +-- man/haplo.em.Rd |only man/haplo.em.control.Rd |only man/haplo.glm.Rd |only man/haplo.glm.control.Rd |only man/haplo.model.frame.Rd |only man/haplo.score.Rd |only man/haplo.score.slide.Rd |only man/haplointeraction.Rd | 1 man/hla.demo.Rd |only man/int.Rd | 1 man/interactionPval.Rd | 168 ++++---- man/intervals.Rd | 13 man/louis.info.Rd |only man/na.geno.keep.Rd |only man/plot.haplo.score.Rd |only man/printBanner.Rd |only man/score.sim.control.Rd |only man/setupGeno.Rd |only src |only vignettes/SNPassoc.Rmd | 860 +++++++++++++++++++++---------------------- vignettes/scripts.R |only 61 files changed, 1241 insertions(+), 1163 deletions(-)
Title: R Interface to W3C Markup Validation Services
Description: R interface to a W3C Markup Validation service.
See <https://validator.w3.org/> for more information.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between W3CMarkupValidator versions 0.2-2 dated 2025-12-10 and 0.2-3 dated 2026-04-13
DESCRIPTION | 6 +-- MD5 | 8 ++--- R/w3c.R | 64 ++++++++++++++++++++++++++++++++---------- man/w3c_markup_validate.Rd | 8 ++++- man/w3c_markup_validate_db.Rd | 5 +-- 5 files changed, 66 insertions(+), 25 deletions(-)
More information about W3CMarkupValidator at CRAN
Permanent link
Title: Clustering via Quadratic Scoring
Description: Performs tuning of clustering models, methods and algorithms including the problem of determining an appropriate number of clusters. Validation of cluster analysis results is performed via quadratic scoring using resampling methods, as in Coraggio, L. and Coretto, P. (2023) <doi:10.1016/j.jmva.2023.105181>.
Author: Luca Coraggio [cre, aut] ,
Pietro Coretto [aut]
Maintainer: Luca Coraggio <luca.coraggio@unina.it>
Diff between qcluster versions 1.2.1 dated 2025-01-13 and 2.0.0 dated 2026-04-13
qcluster-1.2.1/qcluster/man/plot_bqs.Rd |only qcluster-1.2.1/qcluster/man/plot_mbcfit.Rd |only qcluster-1.2.1/qcluster/man/predict_mbcfit.Rd |only qcluster-1.2.1/qcluster/man/print_bqs.Rd |only qcluster-1.2.1/qcluster/man/print_mbcfit.Rd |only qcluster-2.0.0/qcluster/DESCRIPTION | 28 - qcluster-2.0.0/qcluster/MD5 | 116 ++--- qcluster-2.0.0/qcluster/NAMESPACE | 50 -- qcluster-2.0.0/qcluster/NEWS | 46 +- qcluster-2.0.0/qcluster/R/banknote.R |only qcluster-2.0.0/qcluster/R/bqs.R | 423 ++++++++++++++---- qcluster-2.0.0/qcluster/R/bqs_implementation_.R | 26 - qcluster-2.0.0/qcluster/R/bqs_rank.R | 101 +++- qcluster-2.0.0/qcluster/R/bqs_select.R | 145 ++++-- qcluster-2.0.0/qcluster/R/ckclp_.R | 45 + qcluster-2.0.0/qcluster/R/ckdat_.R | 8 qcluster-2.0.0/qcluster/R/clust2params.R | 63 ++ qcluster-2.0.0/qcluster/R/d2mix_.R | 17 qcluster-2.0.0/qcluster/R/dpboundary_.R | 4 qcluster-2.0.0/qcluster/R/dpnorm_.R | 21 qcluster-2.0.0/qcluster/R/gmix.R | 365 ++++++++++++--- qcluster-2.0.0/qcluster/R/mbind.R | 73 +++ qcluster-2.0.0/qcluster/R/mset_gmix.R | 136 +++++ qcluster-2.0.0/qcluster/R/mset_kmeans.R | 96 ++++ qcluster-2.0.0/qcluster/R/mset_pam.R | 106 ++++ qcluster-2.0.0/qcluster/R/mset_user.R | 236 +++++++++- qcluster-2.0.0/qcluster/R/parallel_threads_.R |only qcluster-2.0.0/qcluster/R/plot_bqs.R | 119 +++-- qcluster-2.0.0/qcluster/R/plot_clustering.R | 109 ++++ qcluster-2.0.0/qcluster/R/plot_mbcfit.R | 79 +++ qcluster-2.0.0/qcluster/R/predict_mbcfit.R | 109 ++++ qcluster-2.0.0/qcluster/R/print_bqs.R | 135 +++++ qcluster-2.0.0/qcluster/R/print_mbcfit.R | 58 ++ qcluster-2.0.0/qcluster/R/qcluster-package.R |only qcluster-2.0.0/qcluster/R/qscore.R | 91 +++ qcluster-2.0.0/qcluster/build/partial.rdb |binary qcluster-2.0.0/qcluster/man/banknote.Rd | 37 - qcluster-2.0.0/qcluster/man/bqs.Rd | 552 ++++++++++-------------- qcluster-2.0.0/qcluster/man/bqs_rank.Rd | 114 ++-- qcluster-2.0.0/qcluster/man/bqs_select.Rd | 105 ++-- qcluster-2.0.0/qcluster/man/clust2params.Rd | 66 +- qcluster-2.0.0/qcluster/man/gmix.Rd | 447 ++++++++----------- qcluster-2.0.0/qcluster/man/mbind.Rd | 115 ++--- qcluster-2.0.0/qcluster/man/mset_gmix.Rd | 216 ++++----- qcluster-2.0.0/qcluster/man/mset_kmeans.Rd | 184 +++----- qcluster-2.0.0/qcluster/man/mset_pam.Rd | 195 +++----- qcluster-2.0.0/qcluster/man/mset_user.Rd | 303 +++++-------- qcluster-2.0.0/qcluster/man/plot.bqs.Rd |only qcluster-2.0.0/qcluster/man/plot.mbcfit.Rd |only qcluster-2.0.0/qcluster/man/plot_clustering.Rd | 94 ++-- qcluster-2.0.0/qcluster/man/predict.mbcfit.Rd |only qcluster-2.0.0/qcluster/man/print.bqs.Rd |only qcluster-2.0.0/qcluster/man/print.mbcfit.Rd |only qcluster-2.0.0/qcluster/man/qcluster.Rd |only qcluster-2.0.0/qcluster/man/qscore.Rd | 117 ++--- qcluster-2.0.0/qcluster/src/Rsample_from.c | 2 qcluster-2.0.0/qcluster/src/ecm.c | 104 +++- qcluster-2.0.0/qcluster/src/ecm_winit.c | 63 ++ qcluster-2.0.0/qcluster/src/helper_score_smd.c | 4 qcluster-2.0.0/qcluster/src/score_hard.c | 12 qcluster-2.0.0/qcluster/src/score_smooth.c | 83 ++- qcluster-2.0.0/qcluster/tests |only 62 files changed, 3667 insertions(+), 1951 deletions(-)
Title: High-Dimensional Undirected Graph Estimation
Description: Provides a general framework for
high-dimensional undirected graph estimation. It integrates
data preprocessing, neighborhood screening, graph estimation,
and model selection techniques into a pipeline. In
preprocessing stage, the nonparanormal(npn) transformation is
applied to help relax the normality assumption. In the graph
estimation stage, the graph structure is estimated by
Meinshausen-Buhlmann graph estimation, the graphical lasso,
or the TIGER (tuning-insensitive graph estimation and
regression) method, and the first two can be further
accelerated by the lossy screening rule preselecting the
neighborhood of each variable by correlation thresholding. We
target on high-dimensional data analysis usually d >> n, and
the computation is memory-optimized using the sparse matrix
output. We also provide a computationally efficient approach,
correlation thresholding graph estimation. Three
regularization/thresholding parameter selection methods are
included in this package: (1)stab [...truncated...]
Author: Haoming Jiang [aut],
Xinyu Fei [aut],
Han Liu [aut],
Kathryn Roeder [aut],
John Lafferty [aut],
Larry Wasserman [aut],
Xingguo Li [aut],
Tuo Zhao [aut, cre]
Maintainer: Tuo Zhao <tourzhao@gatech.edu>
Diff between huge versions 1.5.1 dated 2026-03-31 and 1.6 dated 2026-04-13
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 5 ++++- R/huge.roc.R | 15 ++++++++------- 4 files changed, 18 insertions(+), 14 deletions(-)
Title: R Client for the 'VirusTotal' API
Description: Provides a comprehensive R interface to the 'VirusTotal' API v3.0
<https://docs.virustotal.com/>, a Google service that analyzes files and
URLs for viruses, worms, trojans and other malware. Features include
file/URL scanning, domain categorization, passive DNS information, IP
reputation analysis, IoC relationships, sandbox analysis, and
comment/voting systems. Implements rate limiting, error handling, and
response validation for robust security analysis workflows.
Author: Gaurav Sood [aut, cre]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between virustotal versions 0.5.0 dated 2025-12-16 and 0.6.0 dated 2026-04-13
virustotal-0.5.0/virustotal/R/post_comments.R |only virustotal-0.5.0/virustotal/man/add_comments.Rd |only virustotal-0.5.0/virustotal/man/as.data.frame.virustotal_response.Rd |only virustotal-0.5.0/virustotal/man/rate_limit_legacy.Rd |only virustotal-0.5.0/virustotal/man/virustotal2_GET.Rd |only virustotal-0.5.0/virustotal/man/virustotal2_POST.Rd |only virustotal-0.6.0/virustotal/DESCRIPTION | 30 - virustotal-0.6.0/virustotal/MD5 | 195 +++++----- virustotal-0.6.0/virustotal/NAMESPACE | 20 - virustotal-0.6.0/virustotal/NEWS.md | 33 + virustotal-0.6.0/virustotal/R/domain_report.R | 24 - virustotal-0.6.0/virustotal/R/download_file.R | 21 - virustotal-0.6.0/virustotal/R/errors.R | 5 virustotal-0.6.0/virustotal/R/file_report.R | 6 virustotal-0.6.0/virustotal/R/get_analysis.R |only virustotal-0.6.0/virustotal/R/get_behaviour_evtx.R |only virustotal-0.6.0/virustotal/R/get_behaviour_html.R |only virustotal-0.6.0/virustotal/R/get_behaviour_memdump.R |only virustotal-0.6.0/virustotal/R/get_behaviour_pcap.R |only virustotal-0.6.0/virustotal/R/get_behaviour_report.R |only virustotal-0.6.0/virustotal/R/get_domain_comments.R | 32 - virustotal-0.6.0/virustotal/R/get_domain_info.R | 5 virustotal-0.6.0/virustotal/R/get_domain_relationship.R | 5 virustotal-0.6.0/virustotal/R/get_domain_votes.R | 5 virustotal-0.6.0/virustotal/R/get_file_behaviour_mitre_trees.R |only virustotal-0.6.0/virustotal/R/get_file_behaviour_summary.R |only virustotal-0.6.0/virustotal/R/get_file_behaviours.R |only virustotal-0.6.0/virustotal/R/get_file_comments.R | 4 virustotal-0.6.0/virustotal/R/get_file_download_url.R | 4 virustotal-0.6.0/virustotal/R/get_file_relationships.R | 12 virustotal-0.6.0/virustotal/R/get_file_votes.R | 5 virustotal-0.6.0/virustotal/R/get_ip_comments.R | 20 - virustotal-0.6.0/virustotal/R/get_ip_info.R | 29 - virustotal-0.6.0/virustotal/R/get_ip_votes.R | 22 - virustotal-0.6.0/virustotal/R/get_url_comments.R | 20 - virustotal-0.6.0/virustotal/R/get_url_relationships.R | 51 +- virustotal-0.6.0/virustotal/R/get_url_votes.R | 18 virustotal-0.6.0/virustotal/R/ip_report.R | 28 - virustotal-0.6.0/virustotal/R/post_domain_comments.R | 33 - virustotal-0.6.0/virustotal/R/post_domain_votes.R | 37 + virustotal-0.6.0/virustotal/R/post_file_comments.R | 28 - virustotal-0.6.0/virustotal/R/post_file_votes.R | 30 - virustotal-0.6.0/virustotal/R/post_ip_comments.R | 31 - virustotal-0.6.0/virustotal/R/post_ip_votes.R | 33 - virustotal-0.6.0/virustotal/R/post_url_comments.R | 30 - virustotal-0.6.0/virustotal/R/post_url_votes.R | 23 - virustotal-0.6.0/virustotal/R/rate_limiting.R | 85 +--- virustotal-0.6.0/virustotal/R/rescan_domain.R |only virustotal-0.6.0/virustotal/R/rescan_file.R | 24 - virustotal-0.6.0/virustotal/R/rescan_ip.R |only virustotal-0.6.0/virustotal/R/rescan_url.R |only virustotal-0.6.0/virustotal/R/s3_classes.R | 94 +--- virustotal-0.6.0/virustotal/R/scan_file.R | 30 - virustotal-0.6.0/virustotal/R/scan_url.R | 27 - virustotal-0.6.0/virustotal/R/security.R | 141 ++----- virustotal-0.6.0/virustotal/R/set_key.R | 37 - virustotal-0.6.0/virustotal/R/url_report.R | 26 - virustotal-0.6.0/virustotal/R/utils.R | 86 ++-- virustotal-0.6.0/virustotal/R/virustotal.R | 129 +----- virustotal-0.6.0/virustotal/R/zzz.R | 14 virustotal-0.6.0/virustotal/README.md | 4 virustotal-0.6.0/virustotal/build/vignette.rds |binary virustotal-0.6.0/virustotal/inst/doc/using_virustotal.R | 11 virustotal-0.6.0/virustotal/inst/doc/using_virustotal.Rmd | 12 virustotal-0.6.0/virustotal/inst/doc/using_virustotal.html | 14 virustotal-0.6.0/virustotal/man/domain_report.Rd | 2 virustotal-0.6.0/virustotal/man/download_file.Rd | 2 virustotal-0.6.0/virustotal/man/file_report.Rd | 4 virustotal-0.6.0/virustotal/man/get_analysis.Rd |only virustotal-0.6.0/virustotal/man/get_behaviour_evtx.Rd |only virustotal-0.6.0/virustotal/man/get_behaviour_html.Rd |only virustotal-0.6.0/virustotal/man/get_behaviour_memdump.Rd |only virustotal-0.6.0/virustotal/man/get_behaviour_pcap.Rd |only virustotal-0.6.0/virustotal/man/get_behaviour_report.Rd |only virustotal-0.6.0/virustotal/man/get_domain_comments.Rd | 12 virustotal-0.6.0/virustotal/man/get_file_behaviour_mitre_trees.Rd |only virustotal-0.6.0/virustotal/man/get_file_behaviour_summary.Rd |only virustotal-0.6.0/virustotal/man/get_file_behaviours.Rd |only virustotal-0.6.0/virustotal/man/get_ip_comments.Rd | 2 virustotal-0.6.0/virustotal/man/get_ip_info.Rd | 9 virustotal-0.6.0/virustotal/man/get_ip_votes.Rd | 2 virustotal-0.6.0/virustotal/man/get_url_comments.Rd | 2 virustotal-0.6.0/virustotal/man/get_url_relationships.Rd | 6 virustotal-0.6.0/virustotal/man/ip_report.Rd | 4 virustotal-0.6.0/virustotal/man/post_domain_comments.Rd | 6 virustotal-0.6.0/virustotal/man/post_domain_votes.Rd | 6 virustotal-0.6.0/virustotal/man/post_file_comments.Rd | 2 virustotal-0.6.0/virustotal/man/post_ip_comments.Rd | 6 virustotal-0.6.0/virustotal/man/post_ip_votes.Rd | 10 virustotal-0.6.0/virustotal/man/post_url_comments.Rd | 2 virustotal-0.6.0/virustotal/man/rescan_domain.Rd |only virustotal-0.6.0/virustotal/man/rescan_file.Rd | 4 virustotal-0.6.0/virustotal/man/rescan_ip.Rd |only virustotal-0.6.0/virustotal/man/rescan_url.Rd |only virustotal-0.6.0/virustotal/man/sanitize_file_path.Rd | 2 virustotal-0.6.0/virustotal/man/scan_file.Rd | 6 virustotal-0.6.0/virustotal/man/scan_url.Rd | 4 virustotal-0.6.0/virustotal/man/set_key.Rd | 2 virustotal-0.6.0/virustotal/man/url_report.Rd | 3 virustotal-0.6.0/virustotal/man/validate_input.Rd |only virustotal-0.6.0/virustotal/man/virustotal-package.Rd | 3 virustotal-0.6.0/virustotal/man/virustotal_GET.Rd | 5 virustotal-0.6.0/virustotal/man/virustotal_POST.Rd | 3 virustotal-0.6.0/virustotal/tests/testthat/test-analysis.R |only virustotal-0.6.0/virustotal/tests/testthat/test-auth.R | 46 +- virustotal-0.6.0/virustotal/tests/testthat/test-behaviour.R |only virustotal-0.6.0/virustotal/tests/testthat/test-data-structures.R | 13 virustotal-0.6.0/virustotal/tests/testthat/test-domain-operations.R | 82 ++++ virustotal-0.6.0/virustotal/tests/testthat/test-error-handling.R | 35 - virustotal-0.6.0/virustotal/tests/testthat/test-file-operations.R | 93 ++-- virustotal-0.6.0/virustotal/tests/testthat/test-ip-operations.R | 74 +++ virustotal-0.6.0/virustotal/tests/testthat/test-pkg-style.R | 1 virustotal-0.6.0/virustotal/tests/testthat/test-rate-limiting.R | 43 -- virustotal-0.6.0/virustotal/tests/testthat/test-url-operations.R | 90 ++++ virustotal-0.6.0/virustotal/vignettes/using_virustotal.Rmd | 12 115 files changed, 1136 insertions(+), 1035 deletions(-)
Title: Deep Learning Model for Time Series Forecasting
Description: Provides deep learning models for time series forecasting
using Recurrent Neural Networks (RNN), Long Short-Term Memory (LSTM),
and Gated Recurrent Unit (GRU). These models capture temporal
dependencies and address vanishing gradient issues in sequential data.
The package enables efficient forecasting for univariate time series.
For methodological details see Jaiswal and co-authors (2022).
<doi:10.1007/s00521-021-06621-3>.
Author: Ronit Jaiswal [aut, cre],
Girish Kumar Jha [aut, ths, ctb],
Rajeev Ranjan Kumar [aut, ctb],
Kapil Choudhary [aut, ctb]
Maintainer: Ronit Jaiswal <ronitjaiswal2912@gmail.com>
This is a re-admission after prior archival of version 0.1.0 dated 2022-09-09
Diff between TSdeeplearning versions 0.1.0 dated 2022-09-09 and 1.0.1 dated 2026-04-13
DESCRIPTION | 19 +++++++++++++------ MD5 | 10 +++++----- man/Data_Maize.Rd | 5 ++++- man/GRU_ts.Rd | 2 +- man/LSTM_ts.Rd | 2 +- man/RNN_ts.Rd | 2 +- 6 files changed, 25 insertions(+), 15 deletions(-)
More information about TSdeeplearning at CRAN
Permanent link
Title: Soil Health Assessment Models for Assessing Soil Conditions and
Suitability
Description: Soil health assessment builds information to improve decision in
soil management. It facilitates assessment of soil conditions for crop suitability [such as those given by FAO
<https://www.fao.org/land-water/databases-and-software/crop-information/en/>],
groundwater recharge, fertility, erosion, salinization [<doi:10.1002/ldr.4211>],
carbon sequestration, irrigation potential, and status of soil resources.
Author: Christian Thine Omuto [aut, cre]
Maintainer: Christian Thine Omuto <thineomuto@yahoo.com>
This is a re-admission after prior archival of version 0.3.1 dated 2026-02-22
Diff between soilassessment versions 0.3.1 dated 2026-02-22 and 0.3.2 dated 2026-04-13
DESCRIPTION | 6 - MD5 | 114 ++++++++++++++++------------- R/ECharm_Info.R | 4 - R/PHharm_Info.R | 4 - R/bulkdenSuit.R |only R/demSuit.R |only R/erosionSuit.R |only R/fertilitySuit.R | 164 +++++++++++++++++++++---------------------- R/physicalSuit.R |only R/porositySuit.R |only R/slopeSuit.R | 164 +++++++++++++++++++++---------------------- man/CECSuit.Rd | 2 man/DataAvailabilityIndex.Rd | 2 man/ECSuit.Rd | 2 man/ECconversion1.Rd | 2 man/ECconversion2.Rd | 2 man/ECconversion3.Rd | 2 man/ESPSuit.Rd | 2 man/LGPSuit.Rd | 2 man/NPPmodel.Rd | 2 man/PHSuit.Rd | 2 man/RotCmoistcorrection.Rd | 2 man/RotCtempcorrection.Rd | 2 man/SASglobeData.Rd | 2 man/SOCSuit.Rd | 2 man/appendTextureclass.Rd | 2 man/bulkdenSuit.Rd |only man/carbonateSuit.Rd | 2 man/classCode.Rd | 2 man/classLUT.Rd | 2 man/classnames.Rd | 2 man/comparisonTable.Rd | 2 man/conversion.Rd | 2 man/createTexturedata.Rd | 2 man/demSuit.Rd |only man/depthSuit.Rd | 2 man/depthharm.Rd | 2 man/drainageSuit.Rd | 2 man/erodFUN.Rd | 2 man/erodibilityRisk.Rd | 2 man/erosionSuit.Rd |only man/erosivFUN.Rd | 2 man/featureRep.Rd | 2 man/fertilityRating.Rd | 2 man/fertilitySuit.Rd | 2 man/imageIndices.Rd | 2 man/permeabilityClass.Rd | 2 man/physicalSuit.Rd |only man/porositySuit.Rd |only man/predAccuracy.Rd | 2 man/rainSuit.Rd | 2 man/reclassifyMap.Rd | 2 man/regmodelSuit.Rd | 2 man/saltClass.Rd | 2 man/saltRating.Rd | 2 man/slopeSuit.Rd | 2 man/sloplenFUN.Rd | 2 man/stoneSuit.Rd | 2 man/suitability.Rd | 2 man/suitabilityClass.Rd | 2 man/surveyPoints.Rd | 2 man/tempSuit.Rd | 2 man/textureSuit.Rd | 2 63 files changed, 280 insertions(+), 270 deletions(-)
More information about soilassessment at CRAN
Permanent link
Title: qPCR Data Analysis
Description: Tools for qPCR data analysis using Delta Ct and Delta Delta Ct methods, including t-test, Wilcoxon-test, ANOVA models, and publication-ready visualizations. The package supports multiple target, and multiple reference genes, and uses a calculation framework adopted from Ganger et al. (2017) <doi:10.1186/s12859-017-1949-5> and Taylor et al. (2019) <doi:10.1016/j.tibtech.2018.12.002>, covering both the Livak and Pfaffl methods.
Author: Ghader Mirzaghaderi [aut, cre, cph]
Maintainer: Ghader Mirzaghaderi <mirzaghaderi@gmail.com>
Diff between rtpcr versions 2.1.6 dated 2026-03-14 and 2.1.7 dated 2026-04-13
DESCRIPTION | 6 MD5 | 14 NEWS.md | 6 inst/doc/Method.Rmd | 4 inst/doc/Method.html | 845 +++--------- inst/shinyapp/app.R | 9 inst/shinyapp/rsconnect/shinyapps.io/mirzaghaderi/rtpcr.dcf | 2 vignettes/Method.Rmd | 4 8 files changed, 267 insertions(+), 623 deletions(-)
Title: Read and Write ODS Files
Description: Read ODS (OpenDocument Spreadsheet) into R as data frame. Also support writing data frame into ODS file.
Author: Gerrit-Jan Schutten [aut],
Chung-hong Chan [aut, cre] ,
Peter Brohan [aut],
Detlef Steuer [aut] ,
Thomas J. Leeper [aut] ,
John Foster [ctb],
Sergio Oller [ctb],
Jim Hester [ctb] ,
Stephen Watts [ctb],
Arthur Katossky [ctb],
Stas Malavin [ctb],
Dunca [...truncated...]
Maintainer: Chung-hong Chan <chainsawtiney@gmail.com>
Diff between readODS versions 2.3.4 dated 2026-04-10 and 2.3.5 dated 2026-04-13
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ src/write_sheet_file_.cpp | 8 -------- 4 files changed, 10 insertions(+), 14 deletions(-)
Title: Client for the 'Notion API'
Description: Enable programmatic interaction with 'Notion' pages,
databases, blocks, comments, and users through the 'Notion API'
<https://developers.notion.com/>. Provides both synchronous and
asynchronous client interfaces for building workflows and automations
that integrate with 'Notion' workspaces. Supports all 'Notion API'
endpoints including content creation, data retrieval, and workspace
management.
Author: Brenwin Ang [aut, cre, cph]
Maintainer: Brenwin Ang <brenwinalj@gmail.com>
Diff between notionapi versions 0.1.0 dated 2025-09-02 and 0.2.0 dated 2026-04-13
notionapi-0.1.0/notionapi/inst/_vcr/notion-blocks-children-retrieve.yml |only notionapi-0.1.0/notionapi/inst/_vcr/notion-database-query.yml |only notionapi-0.1.0/notionapi/inst/_vcr/notion-pages-create-database.yml |only notionapi-0.1.0/notionapi/inst/_vcr/notion-pages-properties-update.yml |only notionapi-0.2.0/notionapi/DESCRIPTION | 10 notionapi-0.2.0/notionapi/MD5 | 119 notionapi-0.2.0/notionapi/NEWS.md | 54 notionapi-0.2.0/notionapi/R/client.R | 65 notionapi-0.2.0/notionapi/R/endpoints.R | 1809 ++++++++-- notionapi-0.2.0/notionapi/R/notion-request.R | 4 notionapi-0.2.0/notionapi/R/utils.R | 29 notionapi-0.2.0/notionapi/R/validation.R | 18 notionapi-0.2.0/notionapi/R/zzz.R | 2 notionapi-0.2.0/notionapi/README.md | 15 notionapi-0.2.0/notionapi/inst/_vcr/api-error-400-validation-multiline.yml | 57 notionapi-0.2.0/notionapi/inst/_vcr/api-error-401-unauthorized.yml | 33 notionapi-0.2.0/notionapi/inst/_vcr/api-error-404.yml | 33 notionapi-0.2.0/notionapi/inst/_vcr/notion-blocks-children-append.yml | 39 notionapi-0.2.0/notionapi/inst/_vcr/notion-blocks-children-list.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-blocks-delete.yml | 38 notionapi-0.2.0/notionapi/inst/_vcr/notion-blocks-retrieve.yml | 37 notionapi-0.2.0/notionapi/inst/_vcr/notion-blocks-update.yml | 40 notionapi-0.2.0/notionapi/inst/_vcr/notion-comments-create.yml | 40 notionapi-0.2.0/notionapi/inst/_vcr/notion-comments-list.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-comments-retrieve.yml | 39 notionapi-0.2.0/notionapi/inst/_vcr/notion-custom-emojis-list.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-data-sources-create.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-data-sources-list-templates.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-data-sources-query.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-data-sources-retrieve.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-data-sources-update.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-database-delete.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-database-update.yml | 43 notionapi-0.2.0/notionapi/inst/_vcr/notion-databases-create.yml | 43 notionapi-0.2.0/notionapi/inst/_vcr/notion-databases-retrieve.yml | 41 notionapi-0.2.0/notionapi/inst/_vcr/notion-file-uploads-external-url.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-file-uploads-list.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-file-uploads-multi-part.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-file-uploads-single-part.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-pages-create.yml | 35 notionapi-0.2.0/notionapi/inst/_vcr/notion-pages-move.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-pages-properties-retrieve.yml | 36 notionapi-0.2.0/notionapi/inst/_vcr/notion-pages-retrieve-markdown.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-pages-retrieve.yml | 37 notionapi-0.2.0/notionapi/inst/_vcr/notion-pages-trash.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-pages-update-markdown.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-pages-update-null.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-pages-update.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-search.yml | 36 notionapi-0.2.0/notionapi/inst/_vcr/notion-users-list.yml | 33 notionapi-0.2.0/notionapi/inst/_vcr/notion-users-me.yml | 33 notionapi-0.2.0/notionapi/inst/_vcr/notion-users-retrieve.yml | 33 notionapi-0.2.0/notionapi/inst/_vcr/notion-views-create.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-views-delete.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-views-list.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-views-queries-create.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-views-queries-delete.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-views-queries-results.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-views-retrieve.yml |only notionapi-0.2.0/notionapi/inst/_vcr/notion-views-update.yml |only notionapi-0.2.0/notionapi/man/BlocksChildrenEndpoint.Rd | 40 notionapi-0.2.0/notionapi/man/BlocksEndpoint.Rd | 37 notionapi-0.2.0/notionapi/man/CommentsEndpoint.Rd | 72 notionapi-0.2.0/notionapi/man/CustomEmojisEndpoint.Rd |only notionapi-0.2.0/notionapi/man/DataSourcesEndpoint.Rd |only notionapi-0.2.0/notionapi/man/DatabasesEndpoint.Rd | 186 - notionapi-0.2.0/notionapi/man/FileUploadsEndpoint.Rd |only notionapi-0.2.0/notionapi/man/NotionClient.Rd | 46 notionapi-0.2.0/notionapi/man/PagesEndpoint.Rd | 242 + notionapi-0.2.0/notionapi/man/PagesPropertiesEndpoint.Rd | 66 notionapi-0.2.0/notionapi/man/UsersEndpoint.Rd | 13 notionapi-0.2.0/notionapi/man/ViewsEndpoint.Rd |only notionapi-0.2.0/notionapi/man/ViewsQueriesEndpoint.Rd |only notionapi-0.2.0/notionapi/man/no_config.Rd | 31 notionapi-0.2.0/notionapi/tests/testthat/_snaps/endpoints.md | 34 notionapi-0.2.0/notionapi/tests/testthat/_snaps/print.md | 3 notionapi-0.2.0/notionapi/tests/testthat/test-client.R | 9 notionapi-0.2.0/notionapi/tests/testthat/test-endpoints.R | 681 +++ notionapi-0.2.0/notionapi/tests/testthat/test.pdf |only 79 files changed, 3081 insertions(+), 1230 deletions(-)
Title: Weighted Adaptive Prediction with Structured Dependence
Description: Builds a joint probabilistic forecast across series and horizons using adaptive copulas (Gaussian/t) with shrinkage-repaired correlations. At the low level it calls a probabilistic mixer per series and horizon, which backtests several simple predictors, predicts next-window Continuous Ranked Probability Score (CRPS), and converts those scores into softmax weights to form a calibrated mixture (r/q/p/dfun). The mixer blends eight simple predictors: a naive predictor that wraps the last move in a PERT distribution; an arima predictor using auto.arima for one-step forecasts; an Exponentially Weighted Moving Average (EWMA) gaussian predictor with mean/variance under a Gaussian; a historical bootstrap predictor that resamples past horizon-aligned moves; a drift residual bootstrap predictor combining linear trend with bootstrapped residuals; a volatility-scaled naive predictor centering on the last move and scaling by recent volatility; a robust median mad predictor using median/MAD with Lapl [...truncated...]
Author: Giancarlo Vercellino [aut, cre, cph]
Maintainer: Giancarlo Vercellino <giancarlo.vercellino@gmail.com>
Diff between wired versions 1.0.0 dated 2026-02-06 and 1.0.1 dated 2026-04-13
DESCRIPTION | 6 - MD5 | 10 +- NEWS.md | 4 + R/main.R | 151 ++++++++++++++++++++++++++++++++++++++++++++- man/wired.Rd | 2 tests/testthat/test-main.R | 2 6 files changed, 163 insertions(+), 12 deletions(-)
Title: Convert 'tinytest' Output to JUnit XML
Description: Unit testing is a solid component of automated CI/CD pipelines.
'tinytest' - a lightweight, zero-dependency alternative to 'testthat' was developed.
To be able to integrate 'tinytests' results into common CI/CD systems the 'tinytests'-object
is converted to JUnit XML format. 'tinytest2JUnit' enables this conversion
while staying lightweight, having only 'tinytest' as its dependency.
Author: Anne-Katrin Hess [aut],
Lennart Tuijnder [aut, cre]
Maintainer: Lennart Tuijnder <lennart.tuijnder@openanalytics.eu>
Diff between tinytest2JUnit versions 1.1.2 dated 2024-05-30 and 1.1.3 dated 2026-04-13
DESCRIPTION | 15 +++++++-------- MD5 | 19 ++++++++++--------- NEWS.md | 5 +++++ R/writeJUnit.R | 4 ++-- inst/example_package/fib/man |only inst/example_tests/skips/test_partial_skipped.R | 4 ++-- inst/tinytest/test_constructJUnitTag.R | 6 +++--- inst/tinytest/test_xml.R | 2 +- man/constructTestsuitesTag.Rd | 2 +- man/testPackage.Rd | 2 +- man/writeJUnit.Rd | 4 ++-- 11 files changed, 34 insertions(+), 29 deletions(-)
More information about tinytest2JUnit at CRAN
Permanent link
Title: Graphical Visualizations for ROBUST-RCT Risk of Bias Assessments
Description: Provides visual representations of risk-of-bias assessments
using the ROBUST-RCT framework, as described in Wang et al. (2025)
<doi:10.1136/bmj-2024-081199>. The graphical visualization displays
both factual evaluation (Step 1) and judgment (Step 2).
Author: Pedro Rodrigues Vidor [aut, cre],
Yohan Casiraghi [ctb],
Sofia Simoni Rossi Fermo [ctb],
Adolfo Moraes de Souza [ctb],
Patricia Klarmann Ziegelmann [ctb],
Maria Ines Schmidt [ctb],
Maicon Falavigna [ctb]
Maintainer: Pedro Rodrigues Vidor <pedro.vidor@ufrgs.br>
Diff between eclipseplot versions 0.9.4 dated 2026-02-19 and 0.9.6 dated 2026-04-13
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/eclipseplot.R | 29 ++++++++++++++++++++++------- man/eclipsedf.Rd | 2 +- man/eclipseplot.Rd | 5 ++++- 5 files changed, 34 insertions(+), 16 deletions(-)
Title: Header-Only 'C++' and 'R' Interface
Description: Provides a header only, 'C++' interface to 'R' with enhancements over 'cpp11'. Enforces copy-on-write
semantics consistent with 'R' behavior. Offers native support for ALTREP objects, 'UTF-8' string handling, modern
'C++11' features and idioms, and reduced memory requirements. Allows for vendoring, making it useful for restricted
environments. Compared to 'cpp11', it adds support for converting 'C++' maps to 'R' lists, 'Roxygen' documentation
directly in 'C++' code, proper handling of matrix attributes, support for nullable external pointers, bidirectional
copy of complex number types, flexibility in type conversions, use of nullable pointers, and various performance
optimizations.
Author: Mauricio Vargas Sepulveda [aut, cre] ,
Posit Software, PBC [aut]
Maintainer: Mauricio Vargas Sepulveda <m.vargas.sepulveda@gmail.com>
Diff between cpp4r versions 0.4.0 dated 2025-12-04 and 0.5.0 dated 2026-04-13
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ inst/include/cpp4r/data_frame.hpp | 9 +-------- 4 files changed, 11 insertions(+), 14 deletions(-)
Title: Data Visualization and Statistical Tools for Agroindustrial
Experiments
Description: Set of tools for statistical analysis, visualization, and reporting of
agroindustrial and agricultural experiments. The package provides functions
to perform one-way and two-way ANOVA with post-hoc tests (Tukey HSD and
Duncan MRT), Welch ANOVA for heteroscedastic data, and the Games-Howell
post-hoc test as a robust alternative when variance homogeneity fails.
Normality of residuals is assessed with the Shapiro-Wilk test and
homoscedasticity with the Fligner-Killeen test; the appropriate statistical
path is selected automatically based on these diagnostics. Coefficients of
variation and statistical power (via one-way ANOVA power analysis) are
reported alongside the post-hoc letter display. High-level wrappers allow
automated multi-variable analysis with optional clustering by one or two
experimental factors, with support for custom level ordering and relabeling.
Results are returned as 'ggplot2' boxplots with mean and letter annotations,
wide-format summary tables ready for publication [...truncated...]
Author: Joaquin Alejandro Salinas Angeles [aut, cre]
Maintainer: Joaquin Alejandro Salinas Angeles <joaquinsa03@gmail.com>
Diff between agrobox versions 0.2.1 dated 2026-01-10 and 0.3.0 dated 2026-04-13
DESCRIPTION | 71 +- MD5 | 24 NAMESPACE | 60 + NEWS.md | 64 ++ R/agrobox.R | 1380 ++++++++++++++++++++++++++++++-------------- R/agroexcel.R | 1 R/agrosintesis.R | 366 +++++++++-- R/globals.R | 5 R/nitrogeno_liberacion.R |only R/pimiento_hibridacion.R |only data |only man/agrobox.Rd | 324 ++++++++-- man/agrosintesis.Rd | 28 man/nitrogeno_liberacion.Rd |only man/pimiento_hibridacion.Rd |only 15 files changed, 1748 insertions(+), 575 deletions(-)