Title: Develop Concise but Comprehensive Shortened Versions of
Psychometric Instruments
Description: Operationalizes the identification problem of which subset of items should be kept in the shortened version of a said psychometric instrument to best represent the set of items comprised in the original version of the said psychometric instrument.
Author: Lois Fournier [aut, cre] ,
Alexandre Heeren [aut] ,
Stephanie Baggio [aut] ,
Luke Clark [aut] ,
Antonio Verdejo-Garcia [aut] ,
Jose C. Perales [aut] ,
Joel Billieux [aut]
Maintainer: Lois Fournier <lois.fournier@unil.ch>
Diff between shortr versions 1.0.1 dated 2025-04-15 and 1.0.2 dated 2026-04-14
DESCRIPTION | 47 +++- MD5 | 15 - NAMESPACE | 1 NEWS.md |only R/shortr.R | 557 +++++++++++++++++++++++++++++------------------------- README.md | 104 ++++------ build/partial.rdb |binary inst/CITATION | 24 +- man/shortr.Rd | 43 +--- 9 files changed, 416 insertions(+), 375 deletions(-)
Title: Computation of NTLKwIEx Distribution Properties
Description: Implements statistical tools for analyzing, simulating, and computing properties of the New Topp-Leone Kumaraswamy Inverse Exponential (NTLKwIEx) distribution. See Atchadé M, Otodji T, and Djibril A (2024) <doi:10.1063/5.0179458> and Atchadé M, Otodji T, Djibril A, and N'bouké M (2023) <doi:10.1515/phys-2023-0151> for details.
Author: Mintode Nicodeme Atchade [aut],
Theophile Otodji [aut, cre]
Maintainer: Theophile Otodji <otodjitheodule@gmail.com>
Diff between NTLKwIEx versions 0.1.0 dated 2024-02-05 and 0.2.0 dated 2026-04-14
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: A Collection of Tools for Network Analysis
Description: Provides a collection of network analytic (convenience) functions which are missing in other standard packages. This includes triad census with attributes <doi:10.1016/j.socnet.2019.04.003>, core-periphery models <doi:10.1016/S0378-8733(99)00019-2>, and several graph generators. Most functions are build upon 'igraph'.
Author: David Schoch [aut, cre]
Maintainer: David Schoch <david@schochastics.net>
Diff between netUtils versions 0.8.4 dated 2026-01-24 and 0.8.5 dated 2026-04-14
DESCRIPTION | 6 - MD5 | 24 ++-- NEWS.md | 4 R/core_periphery.R | 92 ++++++--------- R/dyad_census_attr.R | 5 R/fast_cliques.R | 1 R/graph_products.R | 21 +-- R/graph_structures.R | 11 + R/graphs.R | 27 +--- R/print_igraph.R | 41 ++---- R/qap.R | 21 +++ R/sample_kcores.R | 10 + R/triad_census_attr.R | 293 ++++++++++++++++++++++++++++++++++++++++++++++---- 13 files changed, 402 insertions(+), 154 deletions(-)
Title: Multilevel Supervised Topic Models with Multiple Outcomes
Description: Fits latent Dirichlet allocation (LDA), supervised topic models,
and multilevel supervised topic models for text data with multiple
outcome variables. Core estimation routines are implemented in C++
using the 'Rcpp' ecosystem.
For topic models, see Blei et al. (2003) <https://www.jmlr.org/papers/volume3/blei03a/blei03a.pdf>.
For supervised topic models, see Blei and McAuliffe (2007) <https://papers.nips.cc/paper_files/paper/2007/hash/d56b9fc4b0f1be8871f5e1c40c0067e7-Abstract.html>.
Author: Tomoya Himeno [aut, cre]
Maintainer: Tomoya Himeno <bd24f002@g.hit-u.ac.jp>
Diff between mlstm versions 0.1.6 dated 2026-04-03 and 0.1.7 dated 2026-04-14
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- inst/doc/mlstm-intro.html | 2 +- src/MLSTM.cpp | 14 +++++++------- src/STM.cpp | 12 ++++++------ 5 files changed, 21 insertions(+), 21 deletions(-)
Title: Automated Item Removal Strategies for Exploratory Factor
Analysis
Description: Automates the identification and comparative evaluation of
item-removal strategies in exploratory factor analysis, producing
transparent summaries (explained variance, loading ranges, reliability)
to support comfortable, reproducible decisions. The criteria are
based on best practices and established heuristics (e.g., Costello &
Osborne (2005) <doi:10.7275/jyj1-4868>, Howard (2016)
<doi:10.1080/10447318.2015.1087664>). Includes flexible thresholds for
factor loadings (min_loading) and cross-loading differences (loading_diff).
Author: Ahmet Caliskan [aut, cre],
Abdullah Faruk Kilic [aut]
Maintainer: Ahmet Caliskan <ahmetcaliskan1987@gmail.com>
Diff between ItemRest versions 0.2.4 dated 2026-04-13 and 0.2.5 dated 2026-04-14
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 7 ++----- R/itemrest_core.R | 6 +++--- inst/doc/ItemRest_Demonstration.html | 10 +++++----- 5 files changed, 17 insertions(+), 20 deletions(-)
Title: Conditional Mutual Information Estimation for Multi-Omics Data
Description: The biases introduced in association measures, particularly mutual information,
are influenced by factors such as tumor purity, mutation burden, and hypermethylation.
This package provides the estimation of conditional mutual information (CMI) and its
statistical significance with a focus on its application to multi-omics data. Utilizing
B-spline functions (inspired by Daub et al. (2004) <doi:10.1186/1471-2105-5-118>), the package offers tools to estimate the association between heterogeneous multi-
omics data, while removing the effects of confounding factors. This helps to unravel complex
biological interactions. In addition, it includes methods to evaluate the statistical significance
of these associations, providing a robust framework for multi-omics data integration and
analysis. This package is ideal for researchers in computational biology, bioinformatics,
and systems biology seeking a comprehensive tool for understanding interdependencies in
omics data.
Author: Gaojianyong Wang [aut, cre]
Maintainer: Gaojianyong Wang <gjywang@gmail.com>
Diff between conMItion versions 0.2.1 dated 2025-09-29 and 0.3.0 dated 2026-04-14
DESCRIPTION | 8 +- MD5 | 55 ++++++++-------- NAMESPACE | 29 +++++++- R/ComputeEntropy.R | 114 +++++++++++---------------------- R/ComputeMatrix.R | 138 +++++------------------------------------ R/ComputeMutualInformation.R | 116 ++++++++++------------------------ R/ComputePermutation.R | 141 +++++------------------------------------- R/helper_params.R |only R/zzz.R |only man/CMIBiCondimat2mat.Rd | 6 - man/CMIBiCondimat2matPermu.Rd | 8 +- man/CMIBiCondimat2vec.Rd | 6 - man/CMIBiCondimat2vecPermu.Rd | 8 +- man/CMImat2mat.Rd | 6 - man/CMImat2matPermu.Rd | 8 +- man/CMImat2vec.Rd | 6 - man/CMImat2vecPermu.Rd | 8 +- man/MImat2mat.Rd | 6 - man/MImat2matPermu.Rd | 8 +- man/MImat2vec.Rd | 6 - man/MImat2vecPermu.Rd | 8 +- man/getCMI.Rd | 6 - man/getCMIBiCondi.Rd | 6 - man/getEntropy.Rd | 6 - man/getEntropyBi.Rd | 6 - man/getEntropyQuadri.Rd | 6 - man/getEntropyTri.Rd | 6 - man/getMI.Rd | 6 - man/getMIBi.Rd | 6 - man/resolve_params.Rd |only 30 files changed, 235 insertions(+), 498 deletions(-)
Title: Spatial Regression Models with Compositional Data
Description: Spatial and non-spatial regression models with compositional responses (and compositional predictors) using the alpha--transformation. Relevant papers include: Tsagris M. and Pantazis Y. (2026), <doi:10.48550/arXiv.2510.12663>, Tsagris M. (2015), <https://soche.cl/chjs/volumes/06/02/Tsagris(2015).pdf>, Tsagris M.T., Preston S. and Wood A.T.A. (2011), <doi:10.48550/arXiv.1106.1451>.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between CompositionalSR versions 1.3 dated 2026-04-07 and 1.4 dated 2026-04-14
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- man/CompositionalSR-package.Rd | 4 ++-- man/ice.aesf.Rd | 1 - 4 files changed, 9 insertions(+), 10 deletions(-)
More information about CompositionalSR at CRAN
Permanent link
Title: Anything to 'POSIXct' or 'Date' Converter
Description: Convert input in any one of character, integer, numeric, factor,
or ordered type into 'POSIXct' (or 'Date') objects, using one of a number of
predefined formats, and relying on Boost facilities for date and time parsing.
Author: Dirk Eddelbuettel [aut, cre]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between anytime versions 0.3.12 dated 2025-07-14 and 0.3.13 dated 2026-04-14
anytime-0.3.12/anytime/inst/doc/anytime-introduction.Rnw |only anytime-0.3.12/anytime/vignettes/anytime-intro.pdf |only anytime-0.3.12/anytime/vignettes/anytime-introduction.Rnw |only anytime-0.3.13/anytime/ChangeLog | 32 ++++++++++ anytime-0.3.13/anytime/DESCRIPTION | 13 ++-- anytime-0.3.13/anytime/MD5 | 21 +++--- anytime-0.3.13/anytime/R/init.R | 29 ++++++--- anytime-0.3.13/anytime/R/utils.R | 3 anytime-0.3.13/anytime/build/partial.rdb |binary anytime-0.3.13/anytime/build/vignette.rds |binary anytime-0.3.13/anytime/inst/NEWS.Rd | 14 +++- anytime-0.3.13/anytime/inst/doc/anytime-introduction.pdf |binary anytime-0.3.13/anytime/inst/doc/anytime-introduction.pdf.asis |only anytime-0.3.13/anytime/vignettes/anytime-introduction.pdf.asis |only 14 files changed, 85 insertions(+), 27 deletions(-)
Title: Univariate Time Series Forecasting
Description: An engine for univariate time series forecasting using
different regression models in an autoregressive way. The engine
provides an uniform interface for applying the different models.
Furthermore, it is extensible so that users can easily apply their
own regression models to univariate time series forecasting and
benefit from all the features of the engine, such as preprocessings
or estimation of forecast accuracy.
Author: Maria Pilar Frias-Bustamante [aut] ,
Francisco Martinez [aut, cre, cph]
Maintainer: Francisco Martinez <fmartin@ujaen.es>
Diff between utsf versions 1.3.1 dated 2025-10-23 and 1.3.2 dated 2026-04-14
DESCRIPTION | 8 - MD5 | 26 ++--- NEWS.md | 5 R/build_models.R | 10 + R/do_tuneGrid.R | 7 - R/main.R | 32 +++--- R/print_utsf.R | 22 +++- build/vignette.rds |binary inst/doc/utsf.R | 18 +-- inst/doc/utsf.Rmd | 48 +++++---- inst/doc/utsf.html | 259 ++++++++++++++++++++++++++------------------------- man/create_model.Rd | 21 ++-- man/forecast.utsf.Rd | 2 vignettes/utsf.Rmd | 48 +++++---- 14 files changed, 274 insertions(+), 232 deletions(-)
Title: Individual Diversity-Area Relationships
Description: Computes and tests individual (species, phylogenetic and functional) diversity-area relationships, i.e., how species-, phylogenetic- and functional-diversity varies with spatial scale around the individuals of some species in a community. See applications of these methods in Wiegand et al. (2007) <doi:10.1073/pnas.0705621104> or Chacon-Labella et al. (2016) <doi:10.1007/s00442-016-3547-z>.
Author: Marcelino de la Cruz [aut, cre] ,
Etienne Laliberte [ctb]
Maintainer: Marcelino de la Cruz <marcelino.delacruz@urjc.es>
Diff between idar versions 1.6 dated 2025-05-01 and 1.7 dated 2026-04-14
DESCRIPTION | 23 ++++++++++++++--------- MD5 | 19 ++++++++++++++----- NAMESPACE | 9 +++++++-- R/fdisp.R |only R/gowdis.R |only data/dummy.rda |only data/tussock.rda |only man/dummy.Rd |only man/fdis.Rd | 2 +- man/fdisp.Rd |only man/gowdis.Rd |only man/isar.Rd | 4 ++-- man/tussock.Rd |only src/gowdisC.c |only src/init.c | 13 ++++++++++++- 15 files changed, 50 insertions(+), 20 deletions(-)
Title: Evaluation of Presence-Absence Models
Description: Collection of functions to evaluate presence-absence models. It
comprises functions to adjust discrimination statistics for the
representativeness effect through case-weighting, along with functions for
visualizing the outcomes. Originally outlined in:
Jiménez-Valverde (2022) The uniform AUC: dealing with the
representativeness effect in presence-absence models. Methods Ecol. Evol,
13, 1224-1236.
Author: Alberto Jimenez-Valverde [aut, cre]
Maintainer: Alberto Jimenez-Valverde <alberto.jimenez.valverde@gmail.com>
Diff between vandalico versions 0.2.1 dated 2026-01-08 and 0.2.2 dated 2026-04-14
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 10 ++++++++++ R/AUCuniform.2.R | 14 ++++++++++---- R/AUCuniform.R | 5 +++-- man/AUCuniform.2.Rd | 4 ++-- man/AUCuniform.Rd | 5 +++-- 7 files changed, 38 insertions(+), 20 deletions(-)
Title: Estimation of the ROC Curve and the AUC for Complex Survey Data
Description: Estimate the receiver operating characteristic (ROC) curve, area under the curve (AUC) and optimal cut-off points for individual classification taking into account complex sampling designs when working with complex survey data. Methods implemented in this package are described in: A. Iparragirre, I. Barrio, I. Arostegui (2024) <doi:10.1002/sta4.635>; A. Iparragirre, I. Barrio, J. Aramendi, I. Arostegui (2022) <doi:10.2436/20.8080.02.121>; A. Iparragirre, I. Barrio (2024) <doi:10.1007/978-3-031-65723-8_7>.
Author: Amaia Iparragirre [aut, cre, cph] ,
Irantzu Barrio [aut],
Inmaculada Arostegui [aut]
Maintainer: Amaia Iparragirre <amaia.iparragirre@ehu.eus>
Diff between svyROC versions 1.0.0 dated 2024-10-25 and 1.1.0 dated 2026-04-14
DESCRIPTION | 14 +++++++------- MD5 | 21 +++++++++++++++------ NAMESPACE | 9 +++++++++ NEWS.md | 4 ++++ R/ci.wauc.R |only R/example_variables_wroc_2.R |only R/ht.indep.R |only R/ht.paired.R |only R/wauc.R | 13 +++++++------ README.md | 4 ++++ data/example_variables_wroc_2.rda |only inst/CITATION | 10 +++++----- man/ci.wauc.Rd |only man/example_variables_wroc_2.Rd |only man/ht.indep.Rd |only man/ht.paired.Rd |only 16 files changed, 51 insertions(+), 24 deletions(-)
Title: Graphical User Interface with Integrated 'Diagrammer' for
'Lavaan'
Description: Provides a graphical user interface with an
integrated diagrammer for latent variable models from the 'lavaan' package.
It offers two core functions: first, lavaangui() launches a web application
that allows users to specify models by drawing path diagrams, fitting them,
assessing model fit, and more; second, plot_lavaan() creates interactive
path diagrams from models specified in 'lavaan'. After customizing a diagram
interactively, export_plot() saves it to a file, enabling reproducible
scripts without sacrificing fine-grained control over appearance.
Karch (2024) <doi: 10.1080/10705511.2024.2420678> contains a tutorial.
Author: Julian D. Karch [aut, cre, cph]
Maintainer: Julian D. Karch <j.d.karch@fsw.leidenuniv.nl>
Diff between lavaangui versions 0.3.2 dated 2025-11-30 and 0.4.0 dated 2026-04-14
lavaangui-0.3.2/lavaangui/inst/www/assets/index-13a8ffa6.js |only lavaangui-0.3.2/lavaangui/inst/www/assets/index-7e3ae6b2.css |only lavaangui-0.3.2/lavaangui/inst/www/assets/svelte-fdfc2579.js |only lavaangui-0.4.0/lavaangui/DESCRIPTION | 20 ++- lavaangui-0.4.0/lavaangui/MD5 | 41 ++++--- lavaangui-0.4.0/lavaangui/NAMESPACE | 2 lavaangui-0.4.0/lavaangui/NEWS.md | 20 +++ lavaangui-0.4.0/lavaangui/R/componentLavInspect.R | 2 lavaangui-0.4.0/lavaangui/R/constants.R | 4 lavaangui-0.4.0/lavaangui/R/export_plot.R |only lavaangui-0.4.0/lavaangui/R/functionsServer.R | 34 +++++- lavaangui-0.4.0/lavaangui/R/lavaangui-package.R |only lavaangui-0.4.0/lavaangui/R/lavaangui.R | 2 lavaangui-0.4.0/lavaangui/R/plot_lavaan.R | 38 +++++-- lavaangui-0.4.0/lavaangui/R/remove_layouts.R |only lavaangui-0.4.0/lavaangui/R/serverImageExporter.R |only lavaangui-0.4.0/lavaangui/R/serverLavaanRun.R | 54 ++++------ lavaangui-0.4.0/lavaangui/R/serverLayout.R | 2 lavaangui-0.4.0/lavaangui/R/serverUsersLayoutSaver.R |only lavaangui-0.4.0/lavaangui/R/start_app.R | 59 ++++++++--- lavaangui-0.4.0/lavaangui/build |only lavaangui-0.4.0/lavaangui/inst/www/assets/index-07680a7c.css |only lavaangui-0.4.0/lavaangui/inst/www/assets/index-e0991477.js |only lavaangui-0.4.0/lavaangui/inst/www/assets/svelte-d0c1ce0e.js |only lavaangui-0.4.0/lavaangui/inst/www/index.html | 6 - lavaangui-0.4.0/lavaangui/man/export_plot.Rd |only lavaangui-0.4.0/lavaangui/man/lavaangui-package.Rd |only lavaangui-0.4.0/lavaangui/man/plot_lavaan.Rd | 28 ++++- lavaangui-0.4.0/lavaangui/man/remove_layouts.Rd |only 29 files changed, 215 insertions(+), 97 deletions(-)
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent
access to information contained in various R models, like model
formulas, model terms, information about random effects, data that was
used to fit the model or data from response variables. 'insight'
mainly revolves around two types of functions: Functions that find
(the names of) information, starting with 'find_', and functions that
get the underlying data, starting with 'get_'. The package has a
consistent syntax and works with many different model objects, where
otherwise functions to access these information are missing.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Vincent Arel-Bundock [aut, ctb] ,
Etienne Bacher [aut, ctb] ,
Ale [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between insight versions 1.4.6 dated 2026-02-04 and 1.5.0 dated 2026-04-14
DESCRIPTION | 20 - MD5 | 71 ++- NAMESPACE | 54 ++ NEWS.md | 25 + R/find_formula.R | 25 + R/find_parameters_gam.R | 10 R/find_parameters_other.R | 2 R/get_data.R | 16 R/get_datagrid.R | 3 R/get_parameters_gam.R | 15 R/get_parameters_others.R | 2 R/get_predicted.R | 110 ++++++ R/get_simulated.R |only R/get_simulated_helper.R |only R/get_statistic.R | 23 - R/helper_functions.R | 188 ---------- R/is_model.R | 6 R/link_function.R | 5 R/model_info.R | 18 R/utils_model_info.R | 5 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/display.html | 374 ++++++++++---------- man/get_predicted.Rd | 16 man/get_simulated.Rd |only man/get_statistic.Rd | 8 man/model_info.Rd | 3 tests/testthat/test-FE-formula.R | 2 tests/testthat/test-blmer.R | 2 tests/testthat/test-epiR.R | 6 tests/testthat/test-gam.R | 8 tests/testthat/test-gamm.R | 1 tests/testthat/test-get_predicted.R | 1 tests/testthat/test-get_residuals.R | 3 tests/testthat/test-get_simulated.R |only tests/testthat/test-mgcv.R | 39 ++ tests/testthat/test-nestedLogit.R | 657 +++++++----------------------------- tests/testthat/test-rstpm2.R |only 39 files changed, 751 insertions(+), 969 deletions(-)
Title: Processing Time Series Data Using the Matching Pursuit Algorithm
Description: Provides tools for analysing and decomposing time series data using the Matching Pursuit (MP) algorithm, a greedy signal decomposition technique that represents complex signals as a linear combination of simpler functions (called atoms) selected from a redundant dictionary. For more details see Mallat and Zhang (1993) <doi:10.1109/78.258082>, Pati et al. (1993) <doi:10.1109/ACSSC.1993.342465>, Elad (2010) <doi:10.1007/978-1-4419-7011-4> and Różański (2024) <doi:10.1145/3674832>.
Author: Artur Gramacki [aut, cre] ,
Jaroslaw Gramacki [ctb] ,
Piotr T. Rożanski [ctb]
Maintainer: Artur Gramacki <a.gramacki@gmail.com>
Diff between MatchingPursuit versions 1.0.0 dated 2026-04-09 and 1.0.1 dated 2026-04-14
DESCRIPTION | 8 +-- MD5 | 42 +++++++++---------- NEWS.md | 10 ++++ R/check.checksum.R | 3 - R/clear.cache.R | 10 ++++ R/empi.execute.R | 5 ++ R/empi.install.R | 56 +++++++++++++++++--------- R/empi2tf.R | 17 ++++---- R/filters.coeff.R | 13 +++--- R/gabor.fun.R | 8 +-- R/read.csv.signals.R | 4 + R/read.edf.signals.R | 6 +- R/read.empi.db.file.R | 20 ++++----- R/sig2bin.R | 7 +++ inst/doc/MatchingPursuit.R | 14 +++++- inst/doc/MatchingPursuit.Rmd | 14 +++++- inst/doc/MatchingPursuit.html | 89 ++++++++++++++++++++++++------------------ man/empi.execute.Rd | 3 - man/empi.install.Rd | 17 +++++--- man/read.empi.db.file.Rd | 6 +- man/sig2bin.Rd | 7 +++ vignettes/MatchingPursuit.Rmd | 14 +++++- 22 files changed, 244 insertions(+), 129 deletions(-)
More information about MatchingPursuit at CRAN
Permanent link
Title: Legends for Maps
Description: Create legends for maps and other graphics. Thematic maps need to
be accompanied by legible legends to be fully comprehensible. This package
offers a wide range of legends useful for cartography, some of which may
also be useful for other types of graphics.
Author: Timothee Giraud [cre, aut]
Maintainer: Timothee Giraud <timothee.giraud@cnrs.fr>
Diff between maplegend versions 0.6.1 dated 2026-04-10 and 0.6.2 dated 2026-04-14
DESCRIPTION | 6 +++--- MD5 | 28 ++++++++++++++-------------- NEWS.md | 8 ++++++++ R/leg.R | 9 +++++++++ R/lg_choro.R | 3 --- R/lg_choro_horiz.R | 3 --- R/lg_choro_line.R | 3 --- R/lg_choro_point.R | 3 --- R/lg_choro_point_horiz.R | 3 --- R/lg_choro_symb.R | 3 --- R/lg_cont.R | 2 +- R/lg_cont_horiz.R | 2 +- R/lg_grad_line.R | 3 --- R/lg_utils.R | 47 ++++++++++++++++++++++++++++------------------- inst/tinytest/tests.R | 35 +++++++++++------------------------ 15 files changed, 75 insertions(+), 83 deletions(-)
Title: A Comprehensive Toolkit for Clinical HLA Informatics
Description: A comprehensive toolkit for clinical Human Leukocyte Antigen (HLA) informatics, built on 'tidyverse' <https://tidyverse.tidyverse.org/> principles and making use of genotype list string (GL string, Mack et al. (2023) <doi:10.1111/tan.15126>) for storing and computing HLA genotype data. Specific functionalities include: coercion of HLA data in tabular format to and from GL string; calculation of matching and mismatching in all directions, with multiple output formats; automatic formatting of HLA data for searching within a GL string; truncation of molecular HLA data to a specific number of fields; and reading HLA genotypes in HML files and extracting the GL string. This library is intended for research use. Any application making use of this package in a clinical setting will need to be independently validated according to local regulations.
Author: Nicholas Brown [cre, aut] ,
Busra Coskun [aut]
Maintainer: Nicholas Brown <nicholas.brown@pennmedicine.upenn.edu>
Diff between immunogenetr versions 1.1.0 dated 2026-04-06 and 1.2.0 dated 2026-04-14
DESCRIPTION | 6 - MD5 | 28 ++-- NAMESPACE | 2 NEWS.md | 128 +++++++++++---------- R/HLA_match_summary_HCT.R | 159 +++++++++++++++----------- man/GLstring_gene_copies_combine.Rd | 64 +++++----- man/HLA_dictionary.Rd | 50 ++++---- man/HLA_match_summary_HCT.Rd | 14 ++ man/HLA_mismatched_alleles.Rd | 122 ++++++++++---------- man/HLA_typing_1.Rd | 52 ++++---- man/HLA_typing_LIS.Rd | 56 ++++----- man/Haplotype_frequencies.Rd | 56 ++++----- man/mismatch_table_2010.Rd | 52 ++++---- man/mismatch_table_2016.Rd | 52 ++++---- tests/testthat/test-HLA_match_summary_HCT.R | 165 ++++++++++++++++++++++++++++ 15 files changed, 605 insertions(+), 401 deletions(-)
Title: Distributions Hermite Polynomial Approximation
Description: Multivariate conditional and marginal densities, moments, cumulative distribution functions as well as binary choice and sample selection models based on the Hermite polynomial approximation which was proposed and described by A. Gallant and D. W. Nychka (1987) <doi:10.2307/1913241>.
Author: Bogdan Potanin [aut, cre, ctb],
Sofiia Dolgikh [ctb]
Maintainer: Bogdan Potanin <bogdanpotanin@gmail.com>
Diff between hpa versions 1.3.3 dated 2023-11-29 and 1.3.4 dated 2026-04-14
DESCRIPTION | 20 +- MD5 | 98 +++++----- R/RcppExports.R | 100 +++++----- R/hpaBinary_generics.R | 10 - R/hpaML_generics.R | 14 - R/hpaSelection_generics.R | 21 +- man/bspline.Rd | 16 - man/coef.hpaBinary.Rd | 4 man/coef.hpaML.Rd | 4 man/coef.hpaSelection.Rd | 10 - man/dnorm_parallel.Rd | 2 man/hpaBinary.Rd | 135 +++++++------- man/hpaDist.Rd | 383 ++++++++++++++++++++--------------------- man/hpaDist0.Rd | 44 ++-- man/hpaML.Rd | 128 ++++++------- man/hpaSelection.Rd | 107 +++++------ man/hsaDist.Rd | 30 +-- man/logLik.hpaBinary.Rd | 2 man/logLik.hpaML.Rd | 2 man/logLik.hpaSelection.Rd | 3 man/normalMoment.Rd | 18 - man/plot.hpaBinary.Rd | 6 man/plot.hpaML.Rd | 2 man/plot.hpaSelection.Rd | 2 man/pnorm_parallel.Rd | 6 man/polynomialIndex.Rd | 28 +- man/predict.hpaBinary.Rd | 2 man/predict.hpaML.Rd | 2 man/predict.hpaSelection.Rd | 4 man/predict_hpaBinary.Rd | 2 man/predict_hpaML.Rd | 2 man/predict_hpaSelection.Rd | 2 man/print_summary_hpaBinary.Rd | 2 man/summary.hpaSelection.Rd | 2 man/summary_hpaSelection.Rd | 2 man/truncatedNormalMoment.Rd | 31 +-- man/vcov.hpaBinary.Rd | 4 man/vcov.hpaML.Rd | 4 man/vcov.hpaSelection.Rd | 4 src/ParallelFunctions.cpp | 21 +- src/RcppExports.cpp | 90 ++++----- src/hpa0.cpp | 85 ++++----- src/hpaBinary.cpp | 56 ++--- src/hpaML.cpp | 47 ++--- src/hpaMain.cpp | 84 ++++---- src/hpaSelection.cpp | 18 - src/hpaValidation.cpp | 7 src/normalMoments.cpp | 42 ++-- src/polynomialIndex.cpp | 30 +-- src/spline.cpp | 20 +- 50 files changed, 883 insertions(+), 875 deletions(-)
Title: Pretty 'ggplot2' Themes
Description: A set of complete 'ggplot2' themes and refine
functions for plot appearance. The themes are designed to work
seamlessly with the refine functions, which adjust gridlines and axis
elements to suit the particulars of a plot.
Author: David Hodge [aut, cre, cph]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between ggrefine versions 0.1.0 dated 2026-03-30 and 0.2.0 dated 2026-04-14
ggrefine-0.1.0/ggrefine/man/theme_black.Rd |only ggrefine-0.1.0/ggrefine/man/theme_oat.Rd |only ggrefine-0.1.0/ggrefine/man/theme_stone.Rd |only ggrefine-0.1.0/ggrefine/man/theme_white.Rd |only ggrefine-0.2.0/ggrefine/DESCRIPTION | 15 - ggrefine-0.2.0/ggrefine/MD5 | 37 +- ggrefine-0.2.0/ggrefine/NAMESPACE | 7 ggrefine-0.2.0/ggrefine/NEWS.md | 4 ggrefine-0.2.0/ggrefine/R/refine.R | 32 +- ggrefine-0.2.0/ggrefine/R/theme.R | 145 +--------- ggrefine-0.2.0/ggrefine/README.md | 76 +++-- ggrefine-0.2.0/ggrefine/man/figures/README-example-1.png |binary ggrefine-0.2.0/ggrefine/man/figures/README-unnamed-chunk-2-1.png |binary ggrefine-0.2.0/ggrefine/man/figures/logo.png |binary ggrefine-0.2.0/ggrefine/man/figures/logo.svg | 4 ggrefine-0.2.0/ggrefine/man/refine_classic.Rd | 32 +- ggrefine-0.2.0/ggrefine/man/refine_fusion.Rd | 32 +- ggrefine-0.2.0/ggrefine/man/refine_modern.Rd | 32 +- ggrefine-0.2.0/ggrefine/man/refine_none.Rd | 32 +- ggrefine-0.2.0/ggrefine/man/refine_void.Rd | 32 +- ggrefine-0.2.0/ggrefine/man/theme_dark.Rd |only ggrefine-0.2.0/ggrefine/man/theme_grey.Rd |only ggrefine-0.2.0/ggrefine/man/theme_light.Rd |only 23 files changed, 199 insertions(+), 281 deletions(-)
Title: Backfill Bayesian Optimal Interval Design Using Efficacy and
Toxicity
Description: Implements the Backfill Bayesian Optimal Interval Design (BF-BOIN-ET),
a novel clinical trial methodology for dose optimization that simultaneously consider both efficacy
and toxicity outcome as described in (Takeda et al (2025) <doi:10.1002/pst.2470>).
The package has been extended to include a seamless two-stage phase I/II trial design with backfill
and joint efficacy and toxicity monitoring as described in (Takeda et al (2026) <doi:10.1002/pst.70092>).
Author: Jing Zhu [cre, aut],
Kentaro Takeda [aut],
Yimer Belay Birlie [aut]
Maintainer: Jing Zhu <zhujing716@gmail.com>
Diff between bfboinet versions 0.4.0 dated 2025-06-03 and 1.0.0 dated 2026-04-14
DESCRIPTION | 27 MD5 | 18 NAMESPACE | 7 NEWS.md |only R/backboinet.R | 1941 ++++++++++++++++++------------------- R/backboinetr.R | 2229 +++++++++++++++++++++---------------------- R/bfboinet_rp2.R |only R/select_mtd.R |only README.md |only man/get.oc.backboinet.Rd | 21 man/get.oc.backboinet_rp2.Rd |only man/get.oc.backboinetr.Rd | 23 man/select_mtd.Rd |only 13 files changed, 2142 insertions(+), 2124 deletions(-)
Title: Download and Import Open Street Map Data Extracts
Description: Match, download, convert and import Open Street Map data extracts
obtained from several providers.
Author: Andrea Gilardi [aut, cre] ,
Robin Lovelace [aut] ,
Barry Rowlingson [ctb] ,
Salva Fernandez [rev] for
rOpenSci, see
<https://github.com/ropensci/software-review/issues/395>),
Nicholas Potter [rev] for
rOpenSci, see
<https://github.com/ropensci/soft [...truncated...]
Maintainer: Andrea Gilardi <andrea.gilardi@unimib.it>
Diff between osmextract versions 0.5.3 dated 2025-04-09 and 0.6.0 dated 2026-04-14
DESCRIPTION | 17 MD5 | 81 +-- NAMESPACE | 1 NEWS.md | 347 ++++++------- R/download.R | 166 ++---- R/find.R | 59 -- R/get-boundary.R | 17 R/get-key-values.R | 2 R/get.R | 46 + R/osmextract-package.R | 6 R/utils.R | 39 - R/vectortranslate.R | 225 +++++--- build/vignette.rds |binary data/bbbike_zones.rda |binary data/geofabrik_zones.rda |binary data/openstreetmap_fr_zones.rda |binary inst/doc/osmextract.R | 52 +- inst/doc/osmextract.Rmd | 112 ++-- inst/doc/osmextract.html | 778 +++++++++++++++--------------- inst/doc/providers.html | 6 inst/doc/providers_comparisons.html | 16 inst/doc/tips-and-tricks.R |only inst/doc/tips-and-tricks.Rmd |only inst/doc/tips-and-tricks.html |only man/bbbike_zones.Rd | 2 man/figures/README-iow1-1.png |binary man/figures/README-points-lines-iow-1.png |binary man/figures/README-points-lines-iow-2.png |binary man/geofabrik_zones.Rd | 2 man/get_default_osmconf_ini.Rd |only man/oe_download.Rd | 26 - man/oe_download_directory.Rd | 8 man/oe_find.Rd | 45 - man/oe_get.Rd | 29 - man/oe_get_boundary.Rd | 17 man/oe_match.Rd | 7 man/oe_read.Rd | 6 man/oe_vectortranslate.Rd | 33 - man/openstreetmap_fr_zones.Rd | 2 tests/testthat/test-download.R | 1 tests/testthat/test-get.R | 40 + tests/testthat/test-read.R | 2 vignettes/osmextract.Rmd | 112 ++-- vignettes/tips-and-tricks.Rmd |only 44 files changed, 1250 insertions(+), 1052 deletions(-)
Title: Access 'Office for Budget Responsibility' Data
Description: Provides clean, tidy access to data published by the 'Office for
Budget Responsibility' ('OBR'), the UK's independent fiscal watchdog. Covers
the Public Finances Databank (outturn for PSNB, PSND, receipts, and
expenditure since 1946), the Historical Official Forecasts Database (every
'OBR' forecast since 2010), the Economic and Fiscal Outlook detailed forecast
tables (five-year projections from the latest Budget), the Welfare Trends
Report (incapacity benefit spending and caseloads), and the Fiscal Risks and
Sustainability Report (50-year state pension projections). Data is downloaded
from the 'OBR' on first use and cached locally for subsequent calls. Data is
sourced from the 'OBR' website <https://obr.uk>.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
This is a re-admission after prior archival of version 0.2.4 dated 2026-03-17
Diff between obr versions 0.2.4 dated 2026-03-17 and 0.2.5 dated 2026-04-14
DESCRIPTION | 6 +-- MD5 | 16 +++++----- NEWS.md | 7 ++++ R/efo.R | 18 +++++++---- R/fiscal_sustainability.R | 12 ++++--- R/utils.R | 68 ++++++++++++++++++++++++++++++++++++++++++++ R/welfare.R | 10 +++--- README.md | 2 - tests/testthat/test-utils.R | 5 +++ 9 files changed, 116 insertions(+), 28 deletions(-)
Title: Automatically Fetching References Metadata from Literature
Databases
Description: Provides functions to automatically retrieve and deduplicate reference metadata based on saved search strings. Access to Web of Science and Scopus requires personal API keys, while PubMed can be queried without one. The optional deduplication functionality requires the package 'ASySD' available from <https://github.com/camaradesuk/ASySD>.
Author: Thomas Dumond [cre, aut, cph] ,
Charles Caraguel [ctb] ,
Torben Nielsen [ctb]
Maintainer: Thomas Dumond <thomas.dumond@adelaide.edu.au>
Diff between LitFetchR versions 0.2.1 dated 2026-02-10 and 0.2.2 dated 2026-04-14
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 7 ++++++- R/extract_scp_list.R | 5 ----- 4 files changed, 12 insertions(+), 12 deletions(-)
Title: Clustering Big Data using Expectation Maximization Star (EM*)
Algorithm
Description: Implements the Improved Expectation Maximisation EM* and the traditional EM algorithm for clustering
big data (gaussian mixture models for both multivariate and univariate datasets). This version
implements the faster alternative-EM* that expedites convergence via structure based data segregation.
The implementation supports both random and K-means++ based initialization. Reference: Parichit Sharma,
Hasan Kurban, Mehmet Dalkilic (2022) <doi:10.1016/j.softx.2021.100944>. Hasan Kurban,
Mark Jenne, Mehmet Dalkilic (2016) <doi:10.1007/s41060-017-0062-1>.
Author: Sharma Parichit [aut, cre, ctb],
Kurban Hasan [aut, ctb],
Dalkilic Mehmet [aut]
Maintainer: Sharma Parichit <parishar@iu.edu>
This is a re-admission after prior archival of version 2.0.5 dated 2022-01-15
Diff between DCEM versions 2.0.5 dated 2022-01-15 and 2.0.6 dated 2026-04-14
DESCRIPTION | 9 ++- MD5 | 13 +++-- NEWS.md | 78 +++++++++++++-------------------- build/vignette.rds |binary inst/CITATION | 6 +- inst/WORDLIST |only inst/doc/DCEM.R | 2 inst/doc/DCEM.html | 123 +++++++++++++++++++++++++++++++++++++---------------- 8 files changed, 135 insertions(+), 96 deletions(-)
Title: Access Data from the 'Impect' API
Description: Pull data from the 'Impect' Customer API <https://glossary.impect.com/api-design>. The package can retrieve data such as events or match sums.
Author: Impect GmbH [cph],
Florian Schmitt [aut, cre],
Thomas Walentin [ctb]
Maintainer: Florian Schmitt <florian.schmitt@impect.com>
Diff between impectR versions 2.5.4 dated 2026-02-16 and 2.5.5 dated 2026-04-14
DESCRIPTION | 6 +++--- MD5 | 38 +++++++++++++++++++------------------- NEWS.md | 5 +++++ R/getEvents.R | 10 +++++++++- R/getFormations.R | 4 +++- R/getMatches.R | 20 ++++++++++++++++++++ R/getPlayerIterationAverages.R | 8 ++++++++ R/getPlayerIterationScores.R | 8 ++++++++ R/getPlayerMatchScores.R | 10 ++++++++-- R/getPlayerMatchsums.R | 7 ++++++- R/getPlayerProfileScores.R | 8 +++++++- R/getSetPieces.R | 8 ++++++++ R/getSquadCoefficients.R | 7 ++++++- R/getSquadIterationAverages.R | 7 ++++++- R/getSquadIterationScores.R | 7 ++++++- R/getSquadMatchScores.R | 7 ++++++- R/getSquadMatchsums.R | 7 ++++++- R/getSquadRatings.R | 7 ++++++- R/utils.R | 34 +++++++++++++++++++++++----------- README.md | 10 +++++----- 20 files changed, 168 insertions(+), 50 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-01-27 0.1.1
Title: Enhanced Seasonal Decomposition of Time Series by Loess
Description: Decompose a time series into seasonal, trend, and remainder
components using an implementation of Seasonal Decomposition of Time
Series by Loess (STL) that provides several enhancements over the STL
method in the stats package. These enhancements include handling missing
values, providing higher order (quadratic) loess smoothing with automated
parameter choices, frequency component smoothing beyond the seasonal and
trend components, and some basic plot methods for diagnostics.
Author: Ryan Hafen [aut, cre]
Maintainer: Ryan Hafen <rhafen@gmail.com>
Diff between stlplus versions 0.5.1 dated 2016-01-06 and 0.5.2 dated 2026-04-14
DESCRIPTION | 16 - MD5 | 39 +-- NAMESPACE | 4 NEWS.md |only R/RcppExports.R | 8 R/accessors.R | 29 +- R/cpp_wrappers.R | 2 R/loess_stl.R | 135 +++++++++---- R/plots.R | 203 +++++++++++++------ R/stlplus.R | 504 +++++++++++++++++++++++++++++++++++-------------- README.md | 18 + man/accessors.Rd | 25 +- man/plot.stlplus.Rd | 15 + man/plot_cycle.Rd | 17 + man/plot_rembycycle.Rd | 12 - man/plot_seasonal.Rd | 16 + man/plot_trend.Rd | 22 +- man/stlplus.Rd | 216 +++++++++++++++------ src/RcppExports.cpp | 49 +++- src/loess.cpp | 7 tests/testthat/tests.R | 96 +++++++-- 21 files changed, 1005 insertions(+), 428 deletions(-)
Title: Access, Retrieve, and Work with Canadian Census Data and
Geography
Description: Integrated, convenient, and uniform access to Canadian
Census data and geography retrieved using the 'CensusMapper' API. This package produces analysis-ready
tidy data frames and spatial data in multiple formats, as well as convenience functions
for working with Census variables, variable hierarchies, and region selection. API
keys are freely available with free registration at <https://censusmapper.ca/api>.
Census data and boundary geometries are reproduced and distributed on an "as
is" basis with the permission of Statistics Canada (Statistics Canada 1996; 2001; 2006;
2011; 2016; 2021).
Author: Jens von Bergmann [aut] ,
Dmitry Shkolnik [aut, cre] ,
Aaron Jacobs [aut]
Maintainer: Dmitry Shkolnik <shkolnikd@gmail.com>
Diff between cancensus versions 0.5.10 dated 2025-11-05 and 0.6.0 dated 2026-04-14
DESCRIPTION | 8 - MD5 | 43 +++++--- NAMESPACE | 1 NEWS.md | 33 ++++++ R/cancensus.R | 69 +++++++++++--- R/census_vectors.R | 43 ++++++-- R/geo_suite.R | 3 R/geographies.R | 2 R/helpers.R | 64 ++++++++++++ R/intersect_geometry.R | 2 R/vector_discovery.R | 20 +++- R/vector_viz.R |only README.md | 13 +- inst/doc/Dwellings_by_document_type_cross_tabulation.html | 4 inst/doc/Making_maps_with_cancensus.html | 16 +-- inst/doc/Taxfiler_Data.html | 4 inst/doc/data_discovery.html | 2 inst/doc/intersecting_geometries.html | 6 - inst/doc/statcan_wds.html | 4 man/format_bytes.Rd |only man/get_census.Rd | 5 - man/retry_api_call.Rd |only man/visualize_vector_hierarchy.Rd |only tests |only 24 files changed, 266 insertions(+), 76 deletions(-)