Title: Quantum Computing for Analyzing CD4 Lymphocytes and
Antiretroviral Therapy
Description: Resources, tutorials, and code snippets dedicated to exploring the intersection of quantum computing and artificial intelligence (AI) in the context of analyzing Cluster of Differentiation 4 (CD4) lymphocytes and optimizing antiretroviral therapy (ART) for human immunodeficiency virus (HIV). With the emergence of quantum artificial intelligence and the development of small-scale quantum computers, there's an unprecedented opportunity to revolutionize the understanding of HIV dynamics and treatment strategies. This project leverages a quantum computer simulator, to explore these applications in quantum computing techniques, addressing the challenges in studying CD4 lymphocytes and enhancing ART efficacy.
Author: Juan Pablo Acuna Gonzalez [aut, cre, cph]
Maintainer: Juan Pablo Acuna Gonzalez <22253567@uagro.mx>
Diff between qvirus versions 0.0.5 dated 2025-11-09 and 0.0.6 dated 2026-04-15
DESCRIPTION | 10 +--- MD5 | 10 ++-- NEWS.md | 12 ++++ R/data.R | 132 +++++++++++++++++++++++++++++++++++++++++++++++++++++ data/data_corr.rda |only data/data_enc.rda |only man/data_corr.Rd |only man/data_enc.Rd |only 8 files changed, 155 insertions(+), 9 deletions(-)
Title: Optimal Monotone Conditional Error Functions
Description: Design and analysis of confirmatory adaptive clinical trials using the optimal conditional error framework according to Brannath and Bauer (2004) <doi:10.1111/j.0006-341X.2004.00221.x>. An extension to the optimal conditional error function using interim estimates as described in Brannath and Dreher (2024) <doi:10.48550/arXiv.2402.00814> and functions to ensure that the resulting conditional error function is non-increasing are also available.
Author: Morten Dreher [aut, cre],
Werner Brannath [aut, cph] ,
Cornelia Ursula Kunz [ctb] ,
Johanna zur Verth [aut]
Maintainer: Morten Dreher <morten.dreher@outlook.de>
Diff between optconerrf versions 1.0.1 dated 2025-09-29 and 1.0.2 dated 2026-04-15
DESCRIPTION | 6 MD5 | 21 NEWS.md | 4 R/classes.R | 70 R/utilities.R | 1666 ++++++++++----------- README.md | 6 man/dot-rangeCheck.Rd | 3 tests/testthat/test-getLevelConstant.R | 193 +- tests/testthat/test-getLikelihoodRatio.R |only tests/testthat/test-getOptimalConditionalError.R | 353 +++- tests/testthat/test-getPsi.R |only tests/testthat/test-getSimulationResults.R |only tests/testthat/test-integrateExpectedInformation.R |only tests/testthat/test-utilities.R |only 14 files changed, 1288 insertions(+), 1034 deletions(-)
Title: Network Meta-Analysis of Multiple Diagnostic Tests
Description: Provides statistical methods for network meta-analysis
of diagnostic tests to simultaneously compare multiple tests within a
missing data framework, including:
- Bayesian hierarchical model for network meta-analysis of multiple
diagnostic tests
(Ma, Lian, Chu, Ibrahim, and Chen (2018) <doi:10.1093/biostatistics/kxx025>)
- Bayesian Hierarchical Summary Receiver Operating Characteristic Model
for Network Meta-Analysis of Diagnostic Tests
(Lian, Hodges, and Chu (2019) <doi:10.1080/01621459.2018.1476239>).
Author: Xing Xing [aut, cre] ,
Boyang Lu [aut],
Lifeng Lin [aut],
Qinshu Lian [aut],
James S. Hodges [aut],
Yong Chen [aut],
Haitao Chu [aut]
Maintainer: Xing Xing <xxing8@jh.edu>
Diff between NMADTA versions 0.1.2 dated 2026-01-14 and 0.1.3 dated 2026-04-15
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/contour_hierarchical.R | 3 +-- R/contour_hsroc.R | 1 - R/nmadt.hierarchical.MNAR.R | 2 +- build/partial.rdb |binary man/nmadt.hierarchical.MNAR.Rd | 2 +- 7 files changed, 13 insertions(+), 15 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-15 1.69.3-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-15 0.49.1-1
Title: Decompose Life Expectancy by Age (and Cause)
Description: A set of all-cause and cause-specific life expectancy sensitivity and decomposition methods, including Arriaga (1984) <doi:10.2307/2061029>, others documented by Ponnapalli (2005) <doi:10.4054/DemRes.2005.12.7>, lifetable, numerical, and other analytic or algorithmic approaches such as Horiuchi et al (2008) <doi:10.1353/dem.0.0033>, or Andreev et al (2002) <doi:10.4054/DemRes.2002.7.14>.
Author: Tim Riffe [aut, cre] ,
David Atance [aut] ,
Josep Lledo [aut]
Maintainer: Tim Riffe <tim.riffe@gmail.com>
Diff between LEdecomp versions 1.0.4 dated 2025-11-11 and 1.0.14 dated 2026-04-15
DESCRIPTION | 14 - MD5 | 74 +++++---- NAMESPACE | 9 + R/LEdecomp.R | 198 ++++++++++++++++---------- R/US_Data.R | 23 +-- R/US_data_CoD.R | 24 +-- R/andreev.R |only R/arriaga.R | 7 R/lopez_ruzicka.R | 125 +++++++++++++++- R/lt_sen.R | 2 R/methods.R | 42 +++-- R/plot.LEdecomp.R | 38 ++-- R/sen_opt.R | 9 - README.md | 2 build/partial.rdb |binary data/US_data.rda |binary data/US_data_CoD.rda |binary data/method_registry.rda |binary inst/REFERENCES.bib | 39 +++++ man/LEdecomp.Rd | 19 +- man/US_data.Rd | 17 +- man/US_data_CoD.Rd | 23 +-- man/andreev.Rd |only man/andreev_sym.Rd |only man/arriaga_sym.Rd | 8 - man/lopez_ruzicka.Rd | 2 man/lopez_ruzicka_sym.Rd | 3 man/method_registry.Rd | 2 man/plot.LEdecomp.Rd | 32 +--- man/sen_andreev.Rd |only man/sen_andreev_instantaneous.Rd |only man/sen_andreev_instantaneous2.Rd |only man/sen_andreev_sym.Rd |only man/sen_andreev_sym_instantaneous.Rd |only man/sen_andreev_sym_instantaneous2.Rd |only man/sen_min.Rd | 2 man/sen_resid.Rd | 7 tests/testthat.R | 2 tests/testthat/test-LEdecomp-shape-echo.R |only tests/testthat/test-abridged.R | 6 tests/testthat/test-additivity.R | 8 - tests/testthat/test-sens-abridged-vs-single.R | 9 - tests/testthat/test-symmetry.R | 20 ++ 43 files changed, 508 insertions(+), 258 deletions(-)
Title: Constrained Ordinary Least Squares
Description: Constrained ordinary least squares is performed. One constraint is that all beta coefficients (including the constant) cannot be negative. They can be either 0 or strictly positive. Another constraint is that the sum of the beta coefficients equals a constant. References: Hansen, B. E. (2022). Econometrics, Princeton University Press. <ISBN:9780691235899>.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between cols versions 1.6 dated 2026-03-24 and 1.7 dated 2026-04-15
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 2 +- R/mpcls.R | 31 +++++++++++++++++++------------ R/mpls.R | 31 +++++++++++++++++++------------ man/cols-package.Rd | 4 ++-- 6 files changed, 50 insertions(+), 36 deletions(-)
Title: A 'Shiny' Tool to Create Interactive Catalogues for Geospatial
Data
Description: Seamlessly create interactive online catalogues for geospatial data. Items can be mapped as points or areas and retrieved using either a map or a dynamic table with search form and optional column filters.
Author: Sebastien Plutniak [aut, cre]
Maintainer: Sebastien Plutniak <sebastien.plutniak@posteo.net>
Diff between spatialCatalogueViewer versions 0.2.0 dated 2026-02-25 and 0.2.1 dated 2026-04-15
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 1 + NEWS.md | 6 ++++++ R/app_server.R | 16 ++++++++-------- 5 files changed, 24 insertions(+), 17 deletions(-)
More information about spatialCatalogueViewer at CRAN
Permanent link
Title: Endogenous Switching and Sample Selection Regression Models
Description: Estimate the parameters of multivariate endogenous switching and sample selection models using methods described in Newey (2009) <doi:10.1111/j.1368-423X.2008.00263.x>, E. Kossova, B. Potanin (2018) <https://ideas.repec.org/a/ris/apltrx/0346.html>, E. Kossova, L. Kupriianova, B. Potanin (2020) <https://ideas.repec.org/a/ris/apltrx/0391.html> and E. Kossova, B. Potanin (2022) <https://ideas.repec.org/a/ris/apltrx/0455.html>.
Author: Bogdan Potanin [aut, cre, ctb],
Sofiia Dolgikh [ctb]
Maintainer: Bogdan Potanin <bogdanpotanin@gmail.com>
Diff between switchSelection versions 2.0.0 dated 2024-09-26 and 2.1.0 dated 2026-04-15
DESCRIPTION | 12 MD5 | 94 +++---- NAMESPACE | 5 R/RcppExports.R | 2 R/bootstrap.R | 140 +++++++---- R/cluster.R |only R/coef.R | 12 R/complete.R | 4 R/cps.R | 8 R/data.R | 4 R/fitted.R | 6 R/formula.R | 4 R/groups.R | 6 R/helpFunctions.R | 2 R/lm.R | 2 R/logLik.R | 6 R/lrtest.R | 6 R/msel.R | 210 +++++++++++----- R/names.R | 2 R/opt.R | 36 +- R/par.R | 6 R/predict.R | 224 ++++++++++------- R/sigma.R | 2 R/summary.R | 32 +- R/tbl.R | 39 ++- R/test.R | 494 +++++++++++++++++++++++++++++---------- R/vcov.R | 429 ++++++++++++++++++++++++++++----- data/cps.rda |binary man/bootstrap.Rd | 76 ++++-- man/coef.msel.Rd | 37 +- man/cps.Rd | 8 man/exogenous_fn.Rd | 2 man/fitted.msel.Rd | 6 man/formula_merge.Rd | 2 man/lnL_msel.Rd | 2 man/logLik.msel.Rd | 4 man/lrtest_msel.Rd | 2 man/msel.Rd | 323 +++++++++++++------------ man/nobs.msel.Rd | 2 man/predict.msel.Rd | 57 ++-- man/print.lrtest_msel.Rd | 2 man/print.summary.lrtest_msel.Rd | 2 man/struct_msel.Rd | 8 man/summary.msel.Rd | 8 man/test_msel.Rd | 117 +++++++-- man/update_msel.Rd | 6 man/vcov.msel.Rd | 19 + man/vcov_combine.Rd |only src/msel.cpp | 28 +- 49 files changed, 1726 insertions(+), 772 deletions(-)
More information about switchSelection at CRAN
Permanent link
Title: A Fast Permutation-Based Split-Half Reliability Algorithm
Description: Accurately estimates the reliability of cognitive tasks using a fast and flexible permutation-based split-half reliability algorithm that supports stratified splitting while maintaining equal split sizes. See Kahveci, Bathke, and Blechert (2025) <doi:10.3758/s13423-024-02597-y> for details.
Author: Sercan Kahveci [aut, cre]
Maintainer: Sercan Kahveci <sercan.kahveci@plus.ac.at>
Diff between rapidsplithalf versions 0.6 dated 2025-11-10 and 0.7 dated 2026-04-15
DESCRIPTION | 8 +-- MD5 | 36 +++++++------- NAMESPACE | 2 R/cormean.R | 97 +++++++++++++++++++++++++++++++------- R/helpers.R | 57 +++++++++++----------- R/piper.R | 8 +-- R/rapidsplit.R | 80 ++++++++++++++++++------------- R/spearmanbrown.R | 37 ++++++++++++++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/rapidsplithalf.html | 19 ++++--- man/comprel.Rd |only man/correlation-tools.Rd | 4 + man/figures/README-iatrel-1.png |binary man/figures/README-plotter-1.png |binary man/figures/README-plotter2-1.png |binary man/generateSplits.Rd | 8 ++- man/rapidsplit.Rd | 29 ++++++----- man/requiredTestSize.Rd |only man/spearmanBrown.Rd | 3 + 20 files changed, 264 insertions(+), 124 deletions(-)
More information about rapidsplithalf at CRAN
Permanent link
Title: An Object Oriented System Meant to Become a Successor to S3 and
S4
Description: A new object oriented programming system designed to be a
successor to S3 and S4. It includes formal class, generic, and method
specification, and a limited form of multiple dispatch. It has been
designed and implemented collaboratively by the R Consortium
Object-Oriented Programming Working Group, which includes
representatives from R-Core, 'Bioconductor', 'Posit'/'tidyverse', and
the wider R community.
Author: Object-Oriented Programming Working Group [cph],
Davis Vaughan [aut],
Jim Hester [aut] ,
Tomasz Kalinowski [aut],
Will Landau [aut],
Michael Lawrence [aut],
Martin Maechler [aut] ,
Luke Tierney [aut],
Hadley Wickham [aut, cre]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between S7 versions 0.2.1 dated 2025-11-14 and 0.2.1-1 dated 2026-04-15
S7-0.2.1-1/S7/DESCRIPTION | 4 - S7-0.2.1-1/S7/build/vignette.rds |binary S7-0.2.1-1/S7/inst/doc/S7.html | 13 +-- S7-0.2.1-1/S7/inst/doc/classes-objects.html | 57 +++++++++------- S7-0.2.1-1/S7/inst/doc/compatibility.html | 5 - S7-0.2.1-1/S7/inst/doc/generics-methods.html | 5 - S7-0.2.1-1/S7/inst/doc/motivation.html | 5 - S7-0.2.1-1/S7/inst/doc/packages.html | 5 - S7-0.2.1-1/S7/inst/doc/performance.html | 95 +++++++++++++-------------- S7-0.2.1-1/S7/src/init.c | 1 S7-0.2.1-1/S7/src/method-dispatch.c | 1 S7-0.2.1-1/S7/src/prop.c | 1 S7-0.2.1/S7/MD5 |only 13 files changed, 99 insertions(+), 93 deletions(-)
Title: Text Analysis for All
Description: An R 'shiny' app designed for diverse text analysis tasks, offering a wide range of methodologies tailored to Natural Language Processing (NLP) needs.
It is a versatile, general-purpose tool for analyzing textual data.
'tall' features a comprehensive workflow, including data cleaning, preprocessing, statistical analysis, and visualization, all integrated for effective text analysis.
Author: Massimo Aria [aut, cre, cph] ,
Maria Spano [aut] ,
Luca D'Aniello [aut] ,
Corrado Cuccurullo [ctb] ,
Michelangelo Misuraca [ctb]
Maintainer: Massimo Aria <aria@unina.it>
Diff between tall versions 0.5.2 dated 2026-02-12 and 1.0.0 dated 2026-04-15
tall-0.5.2/tall/inst/tall/tallFunctions.R |only tall-1.0.0/tall/DESCRIPTION | 24 tall-1.0.0/tall/MD5 | 91 tall-1.0.0/tall/NAMESPACE | 87 tall-1.0.0/tall/NEWS.md | 124 + tall-1.0.0/tall/R/RcppExports.R | 12 tall-1.0.0/tall/R/extract_np.R |only tall-1.0.0/tall/R/extract_svo.R |only tall-1.0.0/tall/R/reinert.R | 36 tall-1.0.0/tall/R/syntactic_complexity.R |only tall-1.0.0/tall/R/zzz.R | 85 tall-1.0.0/tall/README.md | 410 ++- tall-1.0.0/tall/inst/CITATION | 33 tall-1.0.0/tall/inst/tall/collocation.R | 147 - tall-1.0.0/tall/inst/tall/cssTags.R | 627 ----- tall-1.0.0/tall/inst/tall/doc_classification.R | 44 tall-1.0.0/tall/inst/tall/documents.R | 2208 +++++++++++++++++--- tall-1.0.0/tall/inst/tall/edit.R | 46 tall-1.0.0/tall/inst/tall/featureroles.R | 349 +-- tall-1.0.0/tall/inst/tall/filters_groups.R | 54 tall-1.0.0/tall/inst/tall/header.R | 18 tall-1.0.0/tall/inst/tall/helpContent.R | 995 ++++++--- tall-1.0.0/tall/inst/tall/home.R | 290 ++ tall-1.0.0/tall/inst/tall/import.R | 122 - tall-1.0.0/tall/inst/tall/keyness.R | 99 tall-1.0.0/tall/inst/tall/libraries.R | 86 tall-1.0.0/tall/inst/tall/overview.R | 743 ++++++ tall-1.0.0/tall/inst/tall/preprocessing.R | 416 ++- tall-1.0.0/tall/inst/tall/report.R | 11 tall-1.0.0/tall/inst/tall/server.R | 183 + tall-1.0.0/tall/inst/tall/settings.R | 444 ++-- tall-1.0.0/tall/inst/tall/tallAI.R | 635 +++++ tall-1.0.0/tall/inst/tall/tallEmbeddings.R |only tall-1.0.0/tall/inst/tall/tallLanguages.R |only tall-1.0.0/tall/inst/tall/tallNLP.R |only tall-1.0.0/tall/inst/tall/tallNetwork.R |only tall-1.0.0/tall/inst/tall/tallOverview.R |only tall-1.0.0/tall/inst/tall/tallReport.R |only tall-1.0.0/tall/inst/tall/tallSentiment.R |only tall-1.0.0/tall/inst/tall/tallShot.R | 11 tall-1.0.0/tall/inst/tall/tallTextIO.R |only tall-1.0.0/tall/inst/tall/tallTopicModel.R |only tall-1.0.0/tall/inst/tall/tallUtils.R |only tall-1.0.0/tall/inst/tall/tallVisualization.R |only tall-1.0.0/tall/inst/tall/ui.R | 92 tall-1.0.0/tall/inst/tall/words.R | 876 ++----- tall-1.0.0/tall/inst/tall/www/dep_tree_example.png |only tall-1.0.0/tall/inst/tall/www/tall-handlers.js |only tall-1.0.0/tall/inst/tall/www/tall-static.css |only tall-1.0.0/tall/man/compute_syntactic_complexity.Rd |only tall-1.0.0/tall/man/extract_noun_phrases.Rd |only tall-1.0.0/tall/man/extract_svo_triplets.Rd |only tall-1.0.0/tall/src/RcppExports.cpp | 53 tall-1.0.0/tall/src/extract_np.cpp |only tall-1.0.0/tall/src/extract_svo.cpp |only tall-1.0.0/tall/src/syntactic_complexity.cpp |only tall-1.0.0/tall/tests |only 57 files changed, 6491 insertions(+), 2960 deletions(-)
Title: Space Filling Optimal Covariate Designs
Description: We have designed this package to address experimental scenarios involving multiple covariates. It focuses on construction of Optimal Covariate Designs (OCDs), checking space filling property of the developed design. The primary objective of the package is to generate OCDs using four methods viz., M array method, Juxtapose method, Orthogonal Integer Array and Hadamard method. The package also evaluates space filling properties of both the base design and OCDs using the MaxPro criterion, providing a meaningful basis for comparison. In addition, it includes tool to visualize the spread offered by the design points in the form of scatterplot, which help users to assess distribution and coverage of design points.
Author: Neethu RS [aut, ctb],
Cini Varghese [aut, ctb],
Mohd Harun [aut, ctb],
Anindita Datta [aut, ctb],
Ashutosh Dalal [aut, ctb, cre]
Maintainer: Ashutosh Dalal <ashutosh.dalal97@gmail.com>
Diff between SFOCDs versions 1.0.0 dated 2025-12-04 and 1.1.0 dated 2026-04-15
DESCRIPTION | 6 ++--- MD5 | 6 ++--- R/Maxpro_Criterion.R | 56 ++++++++++++++++++++++++++++++++++++------------ man/Maxpro_Criterion.Rd | 6 +++-- 4 files changed, 53 insertions(+), 21 deletions(-)
Title: Fully Parameterizable ANOVA Tests
Description: Allows the user to perform ANOVA tests (in a strict sense: continuous and normally-distributed Y variable and 1 or more factorial/categorical X variable(s)), with the possibility to specify the type of sum of squares (1, 2 or 3), the types of variables (Fixed or Random) and their relationships (crossed or nested) with the sole function of the package (FullyParamANOVA()). The resulting outputs are the same as in 'SAS' software. A dataset (Butterfly) to test the function is also joined.
Author: Victor Brans [aut, cre]
Maintainer: Victor Brans <vicbrans003@gmail.com>
Diff between ParamANOVA versions 0.1.2 dated 2025-03-07 and 0.1.3 dated 2026-04-15
DESCRIPTION | 9 MD5 | 6 R/Funs.R | 2175 ++++++++++++++++++++++++++++--------------------- man/FullyParamANOVA.Rd | 10 4 files changed, 1259 insertions(+), 941 deletions(-)
Title: Hugging Face Hub Interface
Description: Provides functionality to download and cache files from 'Hugging Face Hub' <https://huggingface.co/models>.
Uses the same caching structure so files can be shared between different client libraries.
Author: Tomasz Kalinowski [ctb, cre],
Daniel Falbel [aut],
Christophe Regouby [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>
Diff between hfhub versions 0.1.1 dated 2023-08-18 and 0.1.2 dated 2026-04-15
DESCRIPTION | 24 +++-- LICENSE | 2 MD5 | 26 +++-- NEWS.md | 7 + R/hub_download.R | 137 ++++++++++++++++++++++++++--- R/hub_info.R | 8 + R/hub_snapshot.R | 9 + README.md | 2 inst |only man/hub_repo_info.Rd | 10 ++ man/hub_snapshot.Rd | 12 ++ po |only tests/testthat/_snaps/hub_snapshot.md | 2 tests/testthat/test-hub_download.R | 7 + tests/testthat/test-message-translations.R |only 15 files changed, 207 insertions(+), 39 deletions(-)
Title: Subset Partitioning via Anticlustering
Description: The method of anticlustering partitions a pool of elements into groups (i.e., anticlusters) with the goal of maximizing between-group similarity or within-group heterogeneity. The anticlustering approach thereby reverses the logic of cluster analysis that strives for high within-group homogeneity and clear separation between groups. Computationally, anticlustering is accomplished by maximizing instead of minimizing a clustering objective function, such as the intra-cluster variance (used in k-means clustering) or the sum of pairwise distances within clusters. The main function anticlustering() gives access to optimal and heuristic anticlustering methods described in Papenberg and Klau (2021; <doi:10.1037/met0000301>), Brusco et al. (2020; <doi:10.1111/bmsp.12186>), Papenberg (2024; <doi:10.1111/bmsp.12315>), Papenberg, Wang, et al. (2025; <doi:10.1016/j.crmeth.2025.101137>), Papenberg, Breuer, et al. (2025; <doi:10.1017/psy.2025.10052>), and Yang et al. [...truncated...]
Author: Martin Papenberg [aut, cre] ,
Meik Michalke [ctb] ,
Gunnar W. Klau [ths],
Juliane V. Nagel [ctb] ,
Martin Breuer [ctb] ,
Marie L. Schaper [ctb] ,
Max Diekhoff [ctb] ,
Hannah Hengelbrock [ctb]
Maintainer: Martin Papenberg <martin.papenberg@hhu.de>
Diff between anticlust versions 0.8.13 dated 2025-11-29 and 0.8.14 dated 2026-04-15
DESCRIPTION | 8 MD5 | 17 R/categories_to_binary.R | 7 build/vignette.rds |binary inst/doc/Anticlustering_in_2025.html | 1030 ++++++++++++++++++------------- inst/doc/Best_practices.html | 106 ++- inst/doc/Categorical_vars.html | 633 +++++++++++-------- inst/doc/Speeding_up_anticlustering.html | 772 +++++++++++++++-------- inst/doc/stimulus-selection.html | 694 ++++++++++++-------- inst/tinytest/test-one-hot-encoding.R |only 10 files changed, 1964 insertions(+), 1303 deletions(-)
Title: Seamless R and C++ Integration
Description: The 'Rcpp' package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and objects can be
mapped back and forth to C++ equivalents which facilitates both writing of new
code as well as easier integration of third-party libraries. Documentation
about 'Rcpp' is provided by several vignettes included in this package, via the
'Rcpp Gallery' site at <https://gallery.rcpp.org>, the paper by Eddelbuettel and
Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013,
<doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018,
<doi:10.1080/00031305.2017.1375990>); see 'citation("Rcpp")' for details.
Author: Dirk Eddelbuettel [aut, cre] ,
Romain Francois [aut] ,
JJ Allaire [aut] ,
Kevin Ushey [aut] ,
Qiang Kou [aut] ,
Nathan Russell [aut],
Inaki Ucar [aut] ,
Doug Bates [aut] ,
John Chambers [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rcpp versions 1.1.1 dated 2026-01-10 and 1.1.1-1 dated 2026-04-15
Rcpp-1.1.1-1/Rcpp/ChangeLog | 11 ++ Rcpp-1.1.1-1/Rcpp/DESCRIPTION | 15 +-- Rcpp-1.1.1-1/Rcpp/build/partial.rdb |binary Rcpp-1.1.1-1/Rcpp/inst/NEWS.Rd | 9 + Rcpp-1.1.1-1/Rcpp/inst/include/Rcpp/Environment.h | 70 ++++----------- Rcpp-1.1.1-1/Rcpp/inst/include/Rcpp/Function.h | 11 +- Rcpp-1.1.1-1/Rcpp/inst/include/Rcpp/Promise.h | 11 +- Rcpp-1.1.1-1/Rcpp/inst/include/Rcpp/api/meat/Rcpp_eval.h | 4 Rcpp-1.1.1-1/Rcpp/inst/include/Rcpp/config.h | 4 Rcpp-1.1.1-1/Rcpp/tests/tinytest.R | 3 Rcpp-1.1.1/Rcpp/MD5 |only 11 files changed, 63 insertions(+), 75 deletions(-)
Title: Interface for the 'QuickJS-NG' Lightweight 'JavaScript' Engine
Description: An 'R' interface to the 'QuickJS' portable 'JavaScript'
engine. The engine and all 'R' to 'JavaScript' interoperability is bundled
within the package, requiring no dependencies beyond a 'C' compiler.
Author: Andrew R. Johnson [aut, cre] ,
QuickJS Authors [cph] ,
QuickJS-NG Authors [cph]
Maintainer: Andrew R. Johnson <andrew.johnson@arjohnsonau.com>
Diff between QuickJSR versions 1.9.1 dated 2026-04-09 and 1.9.1-2 dated 2026-04-15
QuickJSR-1.9.1-2/QuickJSR/DESCRIPTION | 4 ++-- QuickJSR-1.9.1-2/QuickJSR/build/vignette.rds |binary QuickJSR-1.9.1-2/QuickJSR/inst/doc/working_with_js_types.html | 7 +++---- QuickJSR-1.9.1-2/QuickJSR/src/include/cpp11/R.hpp | 1 + QuickJSR-1.9.1-2/QuickJSR/src/init.cpp | 1 + QuickJSR-1.9.1/QuickJSR/MD5 |only 6 files changed, 7 insertions(+), 6 deletions(-)
Title: Lightweight Precondition, Postcondition, and Sanity Checks
Description: Implements fast, safe, and customizable assertions routines, which
can be used in place of base::stopifnot().
Author: Taras Zakharko [aut, cre]
Maintainer: Taras Zakharko <taras.zakharko@gmail.com>
Diff between precondition versions 0.1.0 dated 2023-03-28 and 0.1.0-1 dated 2026-04-15
precondition-0.1.0-1/precondition/DESCRIPTION | 4 ++-- precondition-0.1.0-1/precondition/src/precondition.c | 1 + precondition-0.1.0/precondition/MD5 |only 3 files changed, 3 insertions(+), 2 deletions(-)
Title: Persistence Homology Utilities
Description: A low-level package for hosting persistence data. It is part of the
'TDAverse' suite of packages, which is designed to provide a collection of
packages for enabling machine learning and data science tasks using
persistent homology. Implements a class for hosting persistence data, a
number of coercers from and to already existing and used data structures
from other packages and functions to compute distances between persistence
diagrams. A formal definition and study of bottleneck and Wasserstein
distances can be found in Bubenik, Scott and Stanley (2023)
<doi:10.1007/s41468-022-00103-8>. Their implementation in 'phutil' relies on
the 'C++' Hera library developed by Kerber, Morozov and Nigmetov (2017)
<doi:10.1145/3064175>.
Author: Aymeric Stamm [aut, cre] ,
Jason Cory Brunson [aut] ,
Michael Kerber [ctb] ,
Dmitriy Morozov [ctb] ,
Arnur Nigmetov [ctb]
Maintainer: Aymeric Stamm <aymeric.stamm@cnrs.fr>
Diff between phutil versions 0.0.1 dated 2025-05-15 and 0.0.1-2 dated 2026-04-15
phutil-0.0.1-2/phutil/DESCRIPTION | 4 phutil-0.0.1-2/phutil/build/partial.rdb |binary phutil-0.0.1-2/phutil/build/vignette.rds |binary phutil-0.0.1-2/phutil/inst/doc/persistence-class.html | 180 +++++++++++--- phutil-0.0.1-2/phutil/inst/doc/validation-benchmark.html | 184 +++++++++++---- phutil-0.0.1-2/phutil/inst/include/cpp11/R.hpp | 1 phutil-0.0.1/phutil/MD5 |only 7 files changed, 295 insertions(+), 74 deletions(-)
Title: Another Approach to Package Installation
Description: The goal of 'pak' is to make package installation faster and
more reliable. In particular, it performs all HTTP operations in
parallel, so metadata resolution and package downloads are fast.
Metadata and package files are cached on the local disk as well. 'pak'
has a dependency solver, so it finds version conflicts before
performing the installation. This version of 'pak' supports CRAN,
'Bioconductor' and 'GitHub' packages as well.
Author: Gabor Csardi [aut, cre],
Jim Hester [aut],
Posit Software, PBC [cph, fnd] ,
Winston Chang [ctb] ,
Ascent Digital Services [cph, fnd] ,
Hadley Wickham [ctb, cph] ,
Jeroen Ooms [ctb] ,
Maelle Salmon [ctb] ,
Duncan Temple Lang [ctb] ,
Lloyd Hilaiel [cph [...truncated...]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pak versions 0.9.3 dated 2026-04-09 and 0.9.3-1 dated 2026-04-15
pak-0.9.3-1/pak/DESCRIPTION | 4 ++-- pak-0.9.3-1/pak/src/library/cli/src/cleancall.c | 2 +- pak-0.9.3-1/pak/src/library/cli/src/init.c | 2 +- pak-0.9.3-1/pak/src/library/cli/src/progress.c | 4 ++-- pak-0.9.3-1/pak/src/library/processx/src/cleancall.c | 2 +- pak-0.9.3-1/pak/src/library/processx/src/init.c | 2 +- pak-0.9.3-1/pak/src/library/ps/src/cleancall.c | 2 +- pak-0.9.3/pak/MD5 |only 8 files changed, 9 insertions(+), 9 deletions(-)
Title: Implements the Leiden Algorithm via an R Interface
Description: An R interface to the Leiden algorithm, an iterative community detection algorithm on networks. The algorithm is designed to converge to a partition in which all subsets of all communities are locally optimally assigned, yielding communities guaranteed to be connected. The implementation proves to be fast, scales well, and can be run on graphs of millions of nodes (as long as they can fit in memory). The original implementation was constructed as a python interface "leidenalg" found here: <https://github.com/vtraag/leidenalg>. The algorithm was originally described in Traag, V.A., Waltman, L. & van Eck, N.J. "From Louvain to Leiden: guaranteeing well-connected communities". Sci Rep 9, 5233 (2019) <doi:10.1038/s41598-019-41695-z>.
Author: Peter Kharchenko [aut],
Viktor Petukhov [aut],
Yichen Wang [aut],
V.A. Traag [ctb],
Gabor Csardi [ctb],
Tamas Nepusz [ctb],
Minh Van Nguyen [ctb],
Evan Biederstedt [cre, aut]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between leidenAlg versions 1.1.6 dated 2026-03-06 and 1.1.6-1 dated 2026-04-15
leidenAlg-1.1.6-1/leidenAlg/DESCRIPTION | 4 ++-- leidenAlg-1.1.6-1/leidenAlg/src/rigraph/lazyeval.c | 3 +++ leidenAlg-1.1.6-1/leidenAlg/src/rigraph/rinterface_extra.c | 7 +++++-- leidenAlg-1.1.6/leidenAlg/MD5 |only 4 files changed, 10 insertions(+), 4 deletions(-)
Title: Classes and Methods for 'IP' Addresses
Description: Provides S4 classes for Internet Protocol (IP) versions 4 and 6 addresses and efficient methods for 'IP' addresses comparison, arithmetic, bit manipulation and lookup. Both 'IPv4' and 'IPv6' arbitrary ranges are also supported as well as internationalized ('IDN') domain lookup with and 'whois' query.
Author: Thomas Soubiran [aut],
Rucknium [cre]
Maintainer: Rucknium <Rucknium@protonmail.com>
Diff between IP versions 0.1.6 dated 2025-05-07 and 0.1.6-1 dated 2026-04-15
IP-0.1.6-1/IP/DESCRIPTION | 4 ++-- IP-0.1.6-1/IP/build/vignette.rds |binary IP-0.1.6-1/IP/inst/doc/ip-host.html | 2 +- IP-0.1.6-1/IP/inst/doc/ip-intro.html | 8 ++++---- IP-0.1.6-1/IP/src/Rip.h | 1 + IP-0.1.6/IP/MD5 |only 6 files changed, 8 insertions(+), 7 deletions(-)
Title: Density Estimation with Semidefinite Programming
Description: The models of probability density functions are Gaussian or
exponential distributions with polynomial correction terms.
Using a maximum likelihood method, 'dsdp' computes parameters of Gaussian
or exponential distributions together with degrees of polynomials by
a grid search, and coefficient of polynomials by a variant of semidefinite
programming. It adopts Akaike Information Criterion for model selection.
See a vignette for a tutorial and more on our 'Github' repository
<https://github.com/tsuchiya-lab/dsdp/>.
Author: Satoshi Kakihara [aut, cre],
Takashi Tsuchiya [aut]
Maintainer: Satoshi Kakihara <skakihara@gmail.com>
Diff between dsdp versions 0.1.1 dated 2023-02-11 and 0.1.1-1 dated 2026-04-15
dsdp-0.1.1-1/dsdp/DESCRIPTION | 4 dsdp-0.1.1-1/dsdp/build/vignette.rds |binary dsdp-0.1.1-1/dsdp/inst/doc/Tutorial.R | 370 ++++++++++++++++---------------- dsdp-0.1.1-1/dsdp/inst/doc/Tutorial.pdf |binary dsdp-0.1.1-1/dsdp/src/interface.c | 12 - dsdp-0.1.1/dsdp/MD5 |only 6 files changed, 193 insertions(+), 193 deletions(-)
Title: Header-Only 'C++' and 'R' Interface
Description: Provides a header only, 'C++' interface to 'R' with enhancements over 'cpp11'. Enforces copy-on-write
semantics consistent with 'R' behavior. Offers native support for ALTREP objects, 'UTF-8' string handling, modern
'C++11' features and idioms, and reduced memory requirements. Allows for vendoring, making it useful for restricted
environments. Compared to 'cpp11', it adds support for converting 'C++' maps to 'R' lists, 'Roxygen' documentation
directly in 'C++' code, proper handling of matrix attributes, support for nullable external pointers, bidirectional
copy of complex number types, flexibility in type conversions, use of nullable pointers, and various performance
optimizations.
Author: Mauricio Vargas Sepulveda [aut, cre] ,
Posit Software, PBC [aut]
Maintainer: Mauricio Vargas Sepulveda <m.vargas.sepulveda@gmail.com>
Diff between cpp4r versions 0.5.1 dated 2026-04-15 and 0.5.0-1 dated 2026-04-15
cpp4r |only 1 file changed
Title: Fast AR and ARMA Noise Whitening for Functional MRI (fMRI)
Design and Data
Description: Lightweight utilities to estimate autoregressive (AR) and
autoregressive moving average (ARMA) noise models from residuals and apply
matched generalized least squares to whiten functional magnetic resonance
imaging (fMRI) design and data matrices. The ARMA estimator follows a
classic 1982 approach <doi:10.1093/biomet/69.1.81>, and a restricted AR
family mirrors workflows described by Cox (2012)
<doi:10.1016/j.neuroimage.2011.08.056>.
Author: Bradley Buchsbaum [aut, cre]
Maintainer: Bradley Buchsbaum <brad.buchsbaum@gmail.com>
Diff between fmriAR versions 0.3.1 dated 2026-01-25 and 0.3.2 dated 2026-04-15
DESCRIPTION | 6 +-- MD5 | 12 ++++-- NEWS.md | 13 ++++++- R/fit_and_apply.R | 52 +++++++++++++++++++++++++--- inst/doc/fmriAR-introduction.html | 4 +- tests/testthat/test-ar-contracts.R |only tests/testthat/test-exported-helpers.R |only tests/testthat/test-multiscale-invariants.R |only tests/testthat/test-whitening-oracle-arma.R |only 9 files changed, 72 insertions(+), 15 deletions(-)
Title: Data Analysis Using Regression and Multilevel/Hierarchical
Models
Description: Functions to accompany A. Gelman and J. Hill, Data Analysis Using Regression and Multilevel/Hierarchical Models, Cambridge University Press, 2007.
Author: Andrew Gelman [aut],
Yu-Sung Su [aut, cre] ,
Masanao Yajima [ctb],
Jennifer Hill [ctb],
Maria Grazia Pittau [ctb],
Jouni Kerman [ctb],
Tian Zheng [ctb],
Vincent Dorie [ctb]
Maintainer: Yu-Sung Su <suyusung@tsinghua.edu.cn>
Diff between arm versions 1.15-2 dated 2026-03-22 and 1.15-3 dated 2026-04-15
CHANGELOG | 5 +++++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/standardize.R | 2 +- man/standardize.Rd | 3 +++ 5 files changed, 17 insertions(+), 9 deletions(-)
Title: Transition Network Analysis (TNA)
Description: Provides tools for performing Transition Network Analysis (TNA) to
study relational dynamics, including functions for building and plotting TNA
models, calculating centrality measures, and identifying dominant events and
patterns. TNA statistical techniques (e.g., bootstrapping and permutation
tests) ensure the reliability of observed insights and confirm that
identified dynamics are meaningful. See (Saqr et al., 2025)
<doi:10.1145/3706468.3706513> for more details on TNA.
Author: Mohammed Saqr [aut],
Santtu Tikka [aut],
Sonsoles Lopez-Pernas [aut, cre]
Maintainer: Sonsoles Lopez-Pernas <sonsoles.lopez@uef.fi>
Diff between tna versions 1.2.0 dated 2026-02-12 and 1.2.2 dated 2026-04-15
tna-1.2.0/tna/R/coef.R |only tna-1.2.0/tna/R/indices.R |only tna-1.2.0/tna/R/vcov.R |only tna-1.2.0/tna/tests/testthat/test-indices.R |only tna-1.2.2/tna/DESCRIPTION | 16 tna-1.2.2/tna/MD5 | 144 tna-1.2.2/tna/NEWS.md | 12 tna-1.2.2/tna/R/betweenness.R | 13 tna-1.2.2/tna/R/bootstrap.R | 8 tna-1.2.2/tna/R/centralities.R | 22 tna-1.2.2/tna/R/check.R | 79 tna-1.2.2/tna/R/clusters.R | 93 tna-1.2.2/tna/R/compare.R | 8 tna-1.2.2/tna/R/data.R | 28 tna-1.2.2/tna/R/groups.R | 19 tna-1.2.2/tna/R/mmm.R | 530 -- tna-1.2.2/tna/R/plot.R | 418 - tna-1.2.2/tna/R/print.R | 94 tna-1.2.2/tna/R/summary.R | 46 tna-1.2.2/tna/R/tna-package.R | 4 tna-1.2.2/tna/README.md | 116 tna-1.2.2/tna/build/partial.rdb |binary tna-1.2.2/tna/build/vignette.rds |binary tna-1.2.2/tna/data/engagement_mmm.rda |binary tna-1.2.2/tna/inst/doc/communities_and_cliques.html | 100 tna-1.2.2/tna/inst/doc/complete_tutorial.R | 8 tna-1.2.2/tna/inst/doc/complete_tutorial.Rmd | 8 tna-1.2.2/tna/inst/doc/complete_tutorial.html | 409 - tna-1.2.2/tna/inst/doc/grouped_sequences.R | 107 tna-1.2.2/tna/inst/doc/grouped_sequences.Rmd | 175 tna-1.2.2/tna/inst/doc/grouped_sequences.html | 1294 +++-- tna-1.2.2/tna/inst/doc/prepare_data.html | 115 tna-1.2.2/tna/inst/doc/tna.R | 5 tna-1.2.2/tna/inst/doc/tna.Rmd | 5 tna-1.2.2/tna/inst/doc/tna.html | 280 - tna-1.2.2/tna/man/betweenness_network.Rd | 7 tna-1.2.2/tna/man/cluster_data.Rd | 3 tna-1.2.2/tna/man/compare_sequences.Rd | 8 tna-1.2.2/tna/man/estimate_centrality_stability.Rd | 21 tna-1.2.2/tna/man/figures/README-centralitiesplot-1.svg | 3861 ++++++++-------- tna-1.2.2/tna/man/figures/README-tnaplot-1.svg | 1968 +++----- tna-1.2.2/tna/man/figures/README-tnaplot-2.svg | 1444 ++--- tna-1.2.2/tna/man/figures/README-unnamed-chunk-12-1.svg | 1968 +++----- tna-1.2.2/tna/man/figures/README-unnamed-chunk-14-1.svg | 411 - tna-1.2.2/tna/man/figures/README-unnamed-chunk-16-1.svg | 2772 ++++------- tna-1.2.2/tna/man/import_onehot.Rd | 5 tna-1.2.2/tna/man/plot.group_tna.Rd | 35 tna-1.2.2/tna/man/plot.group_tna_cliques.Rd | 4 tna-1.2.2/tna/man/plot.group_tna_communities.Rd | 4 tna-1.2.2/tna/man/plot.group_tna_permutation.Rd | 4 tna-1.2.2/tna/man/plot.tna.Rd | 73 tna-1.2.2/tna/man/plot.tna_cliques.Rd | 49 tna-1.2.2/tna/man/plot.tna_communities.Rd | 5 tna-1.2.2/tna/man/plot.tna_permutation.Rd | 15 tna-1.2.2/tna/man/plot.tna_sequence_comparison.Rd | 2 tna-1.2.2/tna/man/plot_associations.Rd | 6 tna-1.2.2/tna/man/plot_compare.Rd | 24 tna-1.2.2/tna/man/plot_compare.group_tna.Rd | 14 tna-1.2.2/tna/man/plot_model.Rd | 45 tna-1.2.2/tna/man/print.tna_sequence_comparison.Rd | 2 tna-1.2.2/tna/man/tna-package.Rd | 4 tna-1.2.2/tna/tests/testthat/test-check.R | 84 tna-1.2.2/tna/tests/testthat/test-clusters.R | 179 tna-1.2.2/tna/tests/testthat/test-data.R | 58 tna-1.2.2/tna/tests/testthat/test-groups.R | 7 tna-1.2.2/tna/tests/testthat/test-mmm.R | 20 tna-1.2.2/tna/tests/testthat/test-plot.R | 64 tna-1.2.2/tna/tests/testthat/test-print.R | 14 tna-1.2.2/tna/tests/testthat/test-simulate.R | 6 tna-1.2.2/tna/vignettes/articles/atna.Rmd | 10 tna-1.2.2/tna/vignettes/articles/ftna.Rmd | 14 tna-1.2.2/tna/vignettes/articles/new-docs.Rmd | 72 tna-1.2.2/tna/vignettes/complete_tutorial.Rmd | 8 tna-1.2.2/tna/vignettes/grouped_sequences.Rmd | 175 tna-1.2.2/tna/vignettes/tna.Rmd | 5 75 files changed, 8099 insertions(+), 9527 deletions(-)
More information about tidyOhdsiSolutions at CRAN
Permanent link
Title: R Bindings to the Calendaring Functionality of 'QuantLib'
Description: 'QuantLib' bindings are provided for R using 'Rcpp' via an evolved version
of the initial header-only 'Quantuccia' project offering an subset of 'QuantLib' (now
maintained separately just for the calendaring subset). See the included file 'AUTHORS'
for a full list of contributors to 'QuantLib' (and hence also 'Quantuccia').
Author: Dirk Eddelbuettel [aut, cre] ,
QuantLib Authors [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between qlcal versions 0.1.0 dated 2026-02-18 and 0.1.1 dated 2026-04-15
ChangeLog | 12 +++++++++++ DESCRIPTION | 8 +++---- MD5 | 16 +++++++------- build/partial.rdb |binary inst/NEWS.Rd | 7 ++++++ src/ql/time/calendars/china.cpp | 16 +++++++++++++- src/ql/time/calendars/singapore.cpp | 16 ++++++++++++++ src/ql/time/calendars/singapore.hpp | 2 - src/ql/time/calendars/taiwan.cpp | 39 ++++++++++++++++++++++++++++++++++++ 9 files changed, 102 insertions(+), 14 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-18 0.1.7
2023-05-28 0.1.6
2021-06-12 0.1.5
2021-02-17 0.1.4
Title: Simplicially Constrained Regression Models for Proportions
Description: Simplicially constrained regression models for proportions in both sides. The constraint is always that the betas are non-negative and sum to 1. References: Iverson S.J.., Field C., Bowen W.D. and Blanchard W. (2004) "Quantitative Fatty Acid Signature Analysis: A New Method of Estimating Predator Diets". Ecological Monographs, 74(2): 211-235. <doi:10.1890/02-4105>.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between scpropreg versions 1.1 dated 2026-03-24 and 1.2 dated 2026-04-15
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 2 +- R/mpcls.R | 33 ++++++++++++++++++++------------- man/mkld.Rd | 4 +++- man/pcls.Rd | 8 ++++++-- man/scpropreg-package.Rd | 4 ++-- 7 files changed, 42 insertions(+), 29 deletions(-)
Title: Cite 'R' Packages on the Fly in 'R Markdown' and 'Quarto'
Description: References and cites 'R' and 'R' packages on the fly in 'R
Markdown' and 'Quarto'. 'pakret' provides a minimalist API that
generates preformatted citations for 'R' and 'R' packages, and adds
their references to a '.bib' file directly from within your document.
Author: Arnaud Gallou [aut, cre, cph]
Maintainer: Arnaud Gallou <arangacas@gmail.com>
Diff between pakret versions 0.3.0 dated 2025-12-13 and 0.3.1 dated 2026-04-15
DESCRIPTION | 8 +++--- MD5 | 44 ++++++++++++++++++------------------- NAMESPACE | 2 + NEWS.md | 12 ++++++++-- R/aaa.R | 15 +++++++++--- R/checkers.R | 9 ------- R/pakret-package.R | 5 ++++ R/pakret.R | 7 ----- R/pkrt-list.R | 29 +++++++++++++++++++----- R/pkrt-set.R | 38 +++++++++++++++++-------------- R/pkrt.R | 14 +++++------ R/utils-local.R | 2 - R/zzz.R | 20 ---------------- README.md | 12 +++++++++- man/pkrt.Rd | 12 +++++----- man/pkrt_list.Rd | 12 +++++----- man/pkrt_set.Rd | 14 ++++++++--- tests/testthat/_snaps/pkrt-list.md | 14 +++++++++++ tests/testthat/_snaps/pkrt.md | 2 - tests/testthat/helper.R | 2 - tests/testthat/test-pkrt-list.R | 18 +++++++++++++++ tests/testthat/test-pkrt-set.R | 15 ++++++++++-- tests/testthat/test-pkrt.R | 5 ++++ 23 files changed, 192 insertions(+), 119 deletions(-)
Title: Unmixing Model Framework
Description: Quantifies the provenance of sediments by applying a mixing model algorithm to end sediment mixtures based on a comprehensive characterization of the sediment sources. The 'fingerPro' model builds upon the foundational concept of using mass balance linear equations for sediment source quantification by incorporating several distinct technical advancements. It employs an optimization approach to normalize discrepancies in tracer ranges and minimize the objective function. Latin hypercube sampling is used to explore all possible combinations of source contributions (0-100%), mitigating the risk of local minima. Uncertainty in source estimates is quantified through a Monte Carlo routine, and the model includes additional metrics, such as the normalized error of the virtual mixture, to detect mathematical inconsistencies, non-physical solutions, and biases. A new linear variability propagation (LVP) method is also included to address and quantify potential bias in model outcomes, particula [...truncated...]
Author: Borja Latorre [aut, cre] ,
Leticia Gaspar [aut] ,
Ivan Lizaga [aut] ,
Leticia Palazon [aut] ,
Vince Q Vu [ctb],
Ana Navas [aut, fnd, ths]
Maintainer: Borja Latorre (Core Team) <borja.latorre@csic.es>
Diff between fingerPro versions 2.0 dated 2025-08-27 and 2.1 dated 2026-04-15
fingerPro-2.0/fingerPro/R/CTS_error.R |only fingerPro-2.0/fingerPro/R/CTS_error_2s.R |only fingerPro-2.0/fingerPro/R/CTS_error_3s.R |only fingerPro-2.0/fingerPro/R/CTS_error_4s.R |only fingerPro-2.0/fingerPro/R/CTS_error_5s.R |only fingerPro-2.0/fingerPro/R/CTS_seeds.R |only fingerPro-2.0/fingerPro/R/CTS_seeds_pairs.R |only fingerPro-2.0/fingerPro/R/CTS_seeds_quartets.R |only fingerPro-2.0/fingerPro/R/CTS_seeds_singles.R |only fingerPro-2.0/fingerPro/R/CTS_seeds_triplets.R |only fingerPro-2.0/fingerPro/R/least_squares.R |only fingerPro-2.0/fingerPro/inst/extdata/example_geo_3s_mean.csv |only fingerPro-2.0/fingerPro/inst/extdata/example_geo_3s_raw.csv |only fingerPro-2.0/fingerPro/man/CTS_error.Rd |only fingerPro-2.0/fingerPro/man/CTS_seeds.Rd |only fingerPro-2.1/fingerPro/DESCRIPTION | 50 - fingerPro-2.1/fingerPro/MD5 | 171 +++-- fingerPro-2.1/fingerPro/NAMESPACE | 9 fingerPro-2.1/fingerPro/NEWS.md |only fingerPro-2.1/fingerPro/R/CB_method.R | 6 fingerPro-2.1/fingerPro/R/CI.R | 13 fingerPro-2.1/fingerPro/R/CR.R | 23 fingerPro-2.1/fingerPro/R/CTS_explore.R |only fingerPro-2.1/fingerPro/R/CTS_explore_pairs.R |only fingerPro-2.1/fingerPro/R/CTS_explore_quartets.R |only fingerPro-2.1/fingerPro/R/CTS_explore_singles.R |only fingerPro-2.1/fingerPro/R/CTS_explore_triplets.R |only fingerPro-2.1/fingerPro/R/CTS_select.R |only fingerPro-2.1/fingerPro/R/CTS_select_2s.R |only fingerPro-2.1/fingerPro/R/CTS_select_3s.R |only fingerPro-2.1/fingerPro/R/CTS_select_4s.R |only fingerPro-2.1/fingerPro/R/CTS_select_5s.R |only fingerPro-2.1/fingerPro/R/DFA_test.R | 4 fingerPro-2.1/fingerPro/R/KW_test.R | 2 fingerPro-2.1/fingerPro/R/LDA_plot.R | 9 fingerPro-2.1/fingerPro/R/PCA_plot.R | 2 fingerPro-2.1/fingerPro/R/RcppExports.R | 35 - fingerPro-2.1/fingerPro/R/box_plot.R | 212 +++--- fingerPro-2.1/fingerPro/R/correlation_plot.R | 4 fingerPro-2.1/fingerPro/R/fingerPro-package.R | 103 --- fingerPro-2.1/fingerPro/R/functions.R | 312 ++++++---- fingerPro-2.1/fingerPro/R/ggbiplot.r | 2 fingerPro-2.1/fingerPro/R/individual_tracer_analysis.R | 34 - fingerPro-2.1/fingerPro/R/inputMixture.R | 2 fingerPro-2.1/fingerPro/R/inputSource.R | 2 fingerPro-2.1/fingerPro/R/plot_results.R | 2 fingerPro-2.1/fingerPro/R/range_test.R | 2 fingerPro-2.1/fingerPro/R/ternary_diagram.R | 42 + fingerPro-2.1/fingerPro/R/unmix.R | 38 - fingerPro-2.1/fingerPro/R/unmix_unconstrained.R | 15 fingerPro-2.1/fingerPro/R/unmix_unconstrained_lvp.R | 14 fingerPro-2.1/fingerPro/R/validate_results.R |only fingerPro-2.1/fingerPro/R/virtual_mixture.R |only fingerPro-2.1/fingerPro/R/write_results.R | 4 fingerPro-2.1/fingerPro/README.md |only fingerPro-2.1/fingerPro/build |only fingerPro-2.1/fingerPro/inst/CITATION |only fingerPro-2.1/fingerPro/inst/doc |only fingerPro-2.1/fingerPro/inst/extdata/example_geochemical_3s_mean.csv |only fingerPro-2.1/fingerPro/inst/extdata/example_geochemical_3s_raw.csv |only fingerPro-2.1/fingerPro/man/CB_method.Rd | 6 fingerPro-2.1/fingerPro/man/CI.Rd | 14 fingerPro-2.1/fingerPro/man/CR.Rd | 8 fingerPro-2.1/fingerPro/man/CTS_error_2s.Rd |only fingerPro-2.1/fingerPro/man/CTS_error_3s.Rd |only fingerPro-2.1/fingerPro/man/CTS_error_4s.Rd |only fingerPro-2.1/fingerPro/man/CTS_error_5s.Rd |only fingerPro-2.1/fingerPro/man/CTS_explore.Rd |only fingerPro-2.1/fingerPro/man/CTS_seeds_pairs.Rd |only fingerPro-2.1/fingerPro/man/CTS_seeds_quartets.Rd |only fingerPro-2.1/fingerPro/man/CTS_seeds_singles.Rd |only fingerPro-2.1/fingerPro/man/CTS_seeds_triplets.Rd |only fingerPro-2.1/fingerPro/man/CTS_select.Rd |only fingerPro-2.1/fingerPro/man/DFA_test.Rd | 3 fingerPro-2.1/fingerPro/man/KW_test.Rd | 1 fingerPro-2.1/fingerPro/man/LDA_plot.Rd | 8 fingerPro-2.1/fingerPro/man/PCA_plot.Rd | 2 fingerPro-2.1/fingerPro/man/averaged_dataset.Rd |only fingerPro-2.1/fingerPro/man/box_plot.Rd | 24 fingerPro-2.1/fingerPro/man/check_database.Rd | 57 - fingerPro-2.1/fingerPro/man/correlation_plot.Rd | 4 fingerPro-2.1/fingerPro/man/fingerPro.Rd | 103 --- fingerPro-2.1/fingerPro/man/ggbiplot.Rd | 1 fingerPro-2.1/fingerPro/man/individual_tracer_analysis.Rd | 8 fingerPro-2.1/fingerPro/man/inputMixture.Rd | 1 fingerPro-2.1/fingerPro/man/inputSource.Rd | 1 fingerPro-2.1/fingerPro/man/is_averaged.Rd |only fingerPro-2.1/fingerPro/man/is_isotopic.Rd |only fingerPro-2.1/fingerPro/man/least_squares_c.Rd |only fingerPro-2.1/fingerPro/man/plot_results.Rd | 2 fingerPro-2.1/fingerPro/man/range_test.Rd | 2 fingerPro-2.1/fingerPro/man/read_database.Rd |only fingerPro-2.1/fingerPro/man/select_tracers.Rd | 7 fingerPro-2.1/fingerPro/man/ternary_diagram.Rd | 31 fingerPro-2.1/fingerPro/man/triangles_random_c.Rd |only fingerPro-2.1/fingerPro/man/triangles_virtual_c.Rd |only fingerPro-2.1/fingerPro/man/unmix.Rd | 8 fingerPro-2.1/fingerPro/man/unmix_c.Rd |only fingerPro-2.1/fingerPro/man/unmix_c_lvp.Rd |only fingerPro-2.1/fingerPro/man/unmix_unconstrained.Rd |only fingerPro-2.1/fingerPro/man/unmix_unconstrained_lvp.Rd |only fingerPro-2.1/fingerPro/man/validate_results.Rd |only fingerPro-2.1/fingerPro/man/virtual_mixture.Rd | 8 fingerPro-2.1/fingerPro/man/write_results.Rd | 3 fingerPro-2.1/fingerPro/src/RcppExports.cpp | 41 - fingerPro-2.1/fingerPro/src/fingerprinting.cpp | 88 +- fingerPro-2.1/fingerPro/vignettes |only 107 files changed, 765 insertions(+), 778 deletions(-)
Title: Methods Based on the e-Closure Principle
Description: Implements several methods for False Discovery Rate control based on the e-Closure Principle,
in particular the Closed e-Benjamini-Hochberg and Closed Benjamini-Yekutieli procedures.
Author: Jelle Goeman [aut, cre]
Maintainer: Jelle Goeman <j.j.goeman@lumc.nl>
Diff between eClosure versions 0.9.3 dated 2026-03-17 and 0.9.4 dated 2026-04-15
ChangeLog | 5 ++- DESCRIPTION | 6 ++-- MD5 | 14 ++++++--- NAMESPACE | 1 R/RcppExports.R | 20 +++++++++++++ R/cSu_wrapper.R |only man/closedSu.Rd |only src/RcppExports.cpp | 69 +++++++++++++++++++++++++++++++++++++++++++++++ src/cSu.cpp |only tests/testthat/test_Su.R |only 10 files changed, 106 insertions(+), 9 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-28 0.3.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-26 0.3-0.1
2014-04-25 0.3-0
2013-10-02 0.2-2
2012-04-17 0.2-1
2012-03-24 0.2-0
2011-09-27 0.1-6
2011-09-24 0.1-5
2011-08-11 0.1-4
2011-07-04 0.1-3
2011-04-11 0.1-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-10-18 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-10 1.3.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-15 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-06-21 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-09 2.2-3
2018-10-23 2.2-2
2015-10-20 2.2
2015-04-29 2.1-1
2015-01-20 2.1
2014-05-25 2.0-8
2013-04-14 2.0-7
2012-11-24 2.0-6
2012-09-06 2.0-5
2012-01-22 2.0-4
2012-01-17 2.0-3
2011-09-06 2.0-1
2011-08-08 2.0
2011-06-17 1.9
2011-06-04 1.8-9
2010-12-01 1.8-6
2010-11-18 1.8-5
2010-11-04 1.8-4
2010-10-26 1.8-3
2010-01-24 1.8-1
2010-01-08 1.8
2009-11-11 1.7
2009-06-18 1.5
2009-01-20 1.4
2008-11-06 1.3-5
2008-10-24 1.3-4
2008-09-05 1.3-3
2008-06-23 1.3-2
2008-06-16 1.3-1
2008-03-25 1.3
2008-02-21 1.2-1
2007-10-17 1.1-3
2007-08-14 1.1-1
2007-05-30 1.0-6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-04-15 0.1
Title: High-Performance 'WebGl' Rendering for Package 'leaflet'
Description: Provides bindings to the 'Leaflet.glify' JavaScript library which extends the 'leaflet' JavaScript library to render large data in the browser using 'WebGl'.
Author: Tim Appelhans [cre, aut, cph] ,
Colin Fay [ctb] ,
Robert Plummer [ctb] ,
Kent Johnson [ctb],
Sebastian Gatscha [ctb],
Olivier Roy [ctb]
Maintainer: Tim Appelhans <tappelhans@tutamail.com>
Diff between leafgl versions 0.2.2 dated 2024-11-13 and 0.2.4 dated 2026-04-15
leafgl-0.2.2/leafgl/man/clearGlLayers.Rd |only leafgl-0.2.2/leafgl/man/removeGlPoints.Rd |only leafgl-0.2.2/leafgl/man/removeGlPolygons.Rd |only leafgl-0.2.2/leafgl/man/removeGlPolylines.Rd |only leafgl-0.2.4/leafgl/DESCRIPTION | 24 leafgl-0.2.4/leafgl/MD5 | 61 + leafgl-0.2.4/leafgl/NAMESPACE | 2 leafgl-0.2.4/leafgl/NEWS | 33 - leafgl-0.2.4/leafgl/NEWS.md | 33 - leafgl-0.2.4/leafgl/R/glify-helpers.R | 191 ++---- leafgl-0.2.4/leafgl/R/glify-lines.R | 235 ++++--- leafgl-0.2.4/leafgl/R/glify-points.R | 306 +++++----- leafgl-0.2.4/leafgl/R/glify-polygons.R | 214 +++--- leafgl-0.2.4/leafgl/R/glify-remove-clear.R | 33 - leafgl-0.2.4/leafgl/R/glify-shiny.R | 4 leafgl-0.2.4/leafgl/R/leafgl_package.R |only leafgl-0.2.4/leafgl/R/utils-color.R | 5 leafgl-0.2.4/leafgl/R/utils-popup.R | 2 leafgl-0.2.4/leafgl/inst/examples |only leafgl-0.2.4/leafgl/inst/htmlwidgets/Leaflet.glify/GlifyUtils.js |only leafgl-0.2.4/leafgl/inst/htmlwidgets/Leaflet.glify/addGlifyPoints.js | 86 -- leafgl-0.2.4/leafgl/inst/htmlwidgets/Leaflet.glify/addGlifyPointsSrc.js | 91 +- leafgl-0.2.4/leafgl/inst/htmlwidgets/Leaflet.glify/addGlifyPolygons.js | 104 +-- leafgl-0.2.4/leafgl/inst/htmlwidgets/Leaflet.glify/addGlifyPolygonsSrc.js | 78 +- leafgl-0.2.4/leafgl/inst/htmlwidgets/Leaflet.glify/addGlifyPolylines.js | 105 +-- leafgl-0.2.4/leafgl/inst/htmlwidgets/Leaflet.glify/addGlifyPolylinesSrc.js | 79 +- leafgl-0.2.4/leafgl/inst/htmlwidgets/Leaflet.glify/glify-browser.js | 11 leafgl-0.2.4/leafgl/man/addGlPoints.Rd | 126 ++-- leafgl-0.2.4/leafgl/man/leafgl-package.Rd |only leafgl-0.2.4/leafgl/man/makeColorMatrix.Rd | 3 leafgl-0.2.4/leafgl/man/remove.Rd |only leafgl-0.2.4/leafgl/tests/testthat/test-leafgl-addGlPoints.R | 12 leafgl-0.2.4/leafgl/tests/testthat/test-leafgl-addGlPolygons.R | 18 leafgl-0.2.4/leafgl/tests/testthat/test-leafgl-colors.R | 122 +-- leafgl-0.2.4/leafgl/tests/testthat/test-leafgl-popup.R | 194 +++--- leafgl-0.2.4/leafgl/tests/testthat/test-remove_clear.R | 1 36 files changed, 1161 insertions(+), 1012 deletions(-)
Title: Analysis and Visualization of Complex Networks
Description: Provides tools for the analysis, visualization, and manipulation
of dynamical, social (Saqr et al. (2024) <doi:10.1007/978-3-031-54464-4_10>) and
complex networks (Saqr et al. (2025) <doi:10.1145/3706468.3706513>). The package
supports multiple network formats and offers flexible tools for heterogeneous,
multi-layer, and hierarchical network analysis with simple syntax and
extensive toolset.
Author: Mohammed Saqr [aut, cph],
Sonsoles Lopez-Pernas [aut, cre, cph]
Maintainer: Sonsoles Lopez-Pernas <sonsoles.lopez@uef.fi>
Diff between cograph versions 2.0.0 dated 2026-03-31 and 2.1.1 dated 2026-04-15
cograph-2.0.0/cograph/inst/doc/input-formats.R |only cograph-2.0.0/cograph/inst/doc/input-formats.Rmd |only cograph-2.0.0/cograph/inst/doc/input-formats.html |only cograph-2.0.0/cograph/man/membership.cograph_communities.Rd |only cograph-2.0.0/cograph/man/modularity.cograph_communities.Rd |only cograph-2.0.0/cograph/man/splot.boot_glasso.Rd |only cograph-2.0.0/cograph/man/splot.net_bootstrap.Rd |only cograph-2.0.0/cograph/man/splot.net_permutation.Rd |only cograph-2.0.0/cograph/man/splot.netobject.Rd |only cograph-2.0.0/cograph/man/splot.wtna_mixed.Rd |only cograph-2.0.0/cograph/vignettes/articles/comparison-plots-demo.Rmd |only cograph-2.0.0/cograph/vignettes/articles/function-reference.Rmd |only cograph-2.0.0/cograph/vignettes/articles/network-structure-and-groups.Rmd |only cograph-2.0.0/cograph/vignettes/articles/plotting-tna-models.Rmd |only cograph-2.0.0/cograph/vignettes/articles/why-cograph.Rmd |only cograph-2.0.0/cograph/vignettes/input-formats.Rmd |only cograph-2.1.1/cograph/DESCRIPTION | 25 cograph-2.1.1/cograph/LICENSE | 4 cograph-2.1.1/cograph/MD5 | 491 +- cograph-2.1.1/cograph/NAMESPACE | 99 cograph-2.1.1/cograph/NEWS.md | 111 cograph-2.1.1/cograph/R/aaa-globals.R | 12 cograph-2.1.1/cograph/R/assortativity.R |only cograph-2.1.1/cograph/R/bipartite.R |only cograph-2.1.1/cograph/R/blob-helpers.R | 75 cograph-2.1.1/cograph/R/centrality-extended.R |only cograph-2.1.1/cograph/R/centrality.R | 1750 +++++++++- cograph-2.1.1/cograph/R/class-network.R | 3 cograph-2.1.1/cograph/R/cluster-metrics.R | 56 cograph-2.1.1/cograph/R/cograph.R | 2 cograph-2.1.1/cograph/R/communities.R | 248 - cograph-2.1.1/cograph/R/core-periphery.R |only cograph-2.1.1/cograph/R/edge-metrics.R |only cograph-2.1.1/cograph/R/fit-distribution.R |only cograph-2.1.1/cograph/R/from-qgraph.R | 43 cograph-2.1.1/cograph/R/input-parse.R | 17 cograph-2.1.1/cograph/R/motifs-api.R | 70 cograph-2.1.1/cograph/R/motifs-extract.R | 98 cograph-2.1.1/cograph/R/motifs.R | 134 cograph-2.1.1/cograph/R/network-summary.R | 732 +++- cograph-2.1.1/cograph/R/network-utils.R | 17 cograph-2.1.1/cograph/R/paths.R |only cograph-2.1.1/cograph/R/plot-bootstrap.R | 14 cograph-2.1.1/cograph/R/plot-chord.R | 5 cograph-2.1.1/cograph/R/plot-communities.R | 48 cograph-2.1.1/cograph/R/plot-compare.R | 7 cograph-2.1.1/cograph/R/plot-distributions.R |only cograph-2.1.1/cograph/R/plot-forest.R | 11 cograph-2.1.1/cograph/R/plot-htna-multi.R | 61 cograph-2.1.1/cograph/R/plot-htna.R | 1 cograph-2.1.1/cograph/R/plot-mcml.R | 52 cograph-2.1.1/cograph/R/plot-mlvar.R |only cograph-2.1.1/cograph/R/plot-nestimate.R | 187 - cograph-2.1.1/cograph/R/plot-permutation.R | 37 cograph-2.1.1/cograph/R/plot-simplicial.R | 60 cograph-2.1.1/cograph/R/plot-temporal.R |only cograph-2.1.1/cograph/R/rich-club.R |only cograph-2.1.1/cograph/R/simplify.R | 4 cograph-2.1.1/cograph/R/splot-nodes.R | 16 cograph-2.1.1/cograph/R/splot-params.R | 4 cograph-2.1.1/cograph/R/splot-polygons.R | 42 cograph-2.1.1/cograph/R/splot.R | 109 cograph-2.1.1/cograph/R/vulnerability.R |only cograph-2.1.1/cograph/R/zzz.R | 10 cograph-2.1.1/cograph/README.md | 24 cograph-2.1.1/cograph/build/vignette.rds |binary cograph-2.1.1/cograph/inst/WORDLIST |only cograph-2.1.1/cograph/inst/doc/introduction.R | 259 - cograph-2.1.1/cograph/inst/doc/introduction.Rmd | 527 +-- cograph-2.1.1/cograph/inst/doc/introduction.html | 1511 ++++++-- cograph-2.1.1/cograph/man/aggregate_duplicate_edges.Rd | 2 cograph-2.1.1/cograph/man/as_tna.Rd | 17 cograph-2.1.1/cograph/man/assortativity.Rd |only cograph-2.1.1/cograph/man/assortativity_attribute.Rd |only cograph-2.1.1/cograph/man/centrality.Rd | 121 cograph-2.1.1/cograph/man/centrality_average_distance.Rd |only cograph-2.1.1/cograph/man/centrality_barycenter.Rd |only cograph-2.1.1/cograph/man/centrality_bottleneck.Rd |only cograph-2.1.1/cograph/man/centrality_bridging.Rd |only cograph-2.1.1/cograph/man/centrality_brokerage_coordinator.Rd |only cograph-2.1.1/cograph/man/centrality_brokerage_gatekeeper.Rd |only cograph-2.1.1/cograph/man/centrality_brokerage_itinerant.Rd |only cograph-2.1.1/cograph/man/centrality_brokerage_liaison.Rd |only cograph-2.1.1/cograph/man/centrality_brokerage_representative.Rd |only cograph-2.1.1/cograph/man/centrality_centroid.Rd |only cograph-2.1.1/cograph/man/centrality_closeness_vitality.Rd |only cograph-2.1.1/cograph/man/centrality_clusterrank.Rd |only cograph-2.1.1/cograph/man/centrality_communicability.Rd |only cograph-2.1.1/cograph/man/centrality_communicability_betweenness.Rd |only cograph-2.1.1/cograph/man/centrality_cross_clique.Rd |only cograph-2.1.1/cograph/man/centrality_dangalchev.Rd |only cograph-2.1.1/cograph/man/centrality_decay.Rd |only cograph-2.1.1/cograph/man/centrality_diversity.Rd |only cograph-2.1.1/cograph/man/centrality_dmnc.Rd |only cograph-2.1.1/cograph/man/centrality_effective_size.Rd |only cograph-2.1.1/cograph/man/centrality_entropy.Rd |only cograph-2.1.1/cograph/man/centrality_expected.Rd |only cograph-2.1.1/cograph/man/centrality_flow_betweenness.Rd |only cograph-2.1.1/cograph/man/centrality_gateway.Rd |only cograph-2.1.1/cograph/man/centrality_generalized_closeness.Rd |only cograph-2.1.1/cograph/man/centrality_gilschmidt.Rd |only cograph-2.1.1/cograph/man/centrality_harary.Rd |only cograph-2.1.1/cograph/man/centrality_hubbell.Rd |only cograph-2.1.1/cograph/man/centrality_information.Rd |only cograph-2.1.1/cograph/man/centrality_integration.Rd |only cograph-2.1.1/cograph/man/centrality_katz.Rd |only cograph-2.1.1/cograph/man/centrality_lac.Rd |only cograph-2.1.1/cograph/man/centrality_leaderrank.Rd |only cograph-2.1.1/cograph/man/centrality_lin.Rd |only cograph-2.1.1/cograph/man/centrality_lobby.Rd |only cograph-2.1.1/cograph/man/centrality_local_bridging.Rd |only cograph-2.1.1/cograph/man/centrality_markov.Rd |only cograph-2.1.1/cograph/man/centrality_mnc.Rd |only cograph-2.1.1/cograph/man/centrality_pairwisedis.Rd |only cograph-2.1.1/cograph/man/centrality_participation.Rd |only cograph-2.1.1/cograph/man/centrality_prestige_domain.Rd |only cograph-2.1.1/cograph/man/centrality_prestige_domain_proximity.Rd |only cograph-2.1.1/cograph/man/centrality_radiality.Rd |only cograph-2.1.1/cograph/man/centrality_random_walk.Rd |only cograph-2.1.1/cograph/man/centrality_reaching_local.Rd |only cograph-2.1.1/cograph/man/centrality_residual_closeness.Rd |only cograph-2.1.1/cograph/man/centrality_salsa.Rd |only cograph-2.1.1/cograph/man/centrality_semilocal.Rd |only cograph-2.1.1/cograph/man/centrality_stress.Rd |only cograph-2.1.1/cograph/man/centrality_topological_coefficient.Rd |only cograph-2.1.1/cograph/man/centrality_wiener.Rd |only cograph-2.1.1/cograph/man/centrality_within_module_z.Rd |only cograph-2.1.1/cograph/man/centralization.Rd |only cograph-2.1.1/cograph/man/cograph-package.Rd | 1 cograph-2.1.1/cograph/man/communities.Rd | 17 cograph-2.1.1/cograph/man/community_edge_betweenness.Rd | 2 cograph-2.1.1/cograph/man/community_fast_greedy.Rd | 2 cograph-2.1.1/cograph/man/community_leading_eigenvector.Rd | 2 cograph-2.1.1/cograph/man/community_louvain.Rd | 4 cograph-2.1.1/cograph/man/community_optimal.Rd | 2 cograph-2.1.1/cograph/man/community_spinglass.Rd | 2 cograph-2.1.1/cograph/man/core_periphery.Rd |only cograph-2.1.1/cograph/man/degree_distribution.Rd | 78 cograph-2.1.1/cograph/man/detect_duplicate_edges.Rd | 2 cograph-2.1.1/cograph/man/dispersion.Rd |only cograph-2.1.1/cograph/man/dot-edge_keys.Rd |only cograph-2.1.1/cograph/man/dot-psych_style_defaults.Rd |only cograph-2.1.1/cograph/man/dot-resolve_weights.Rd | 2 cograph-2.1.1/cograph/man/dot-wrap_communities.Rd | 2 cograph-2.1.1/cograph/man/draw_donut_node_base.Rd | 2 cograph-2.1.1/cograph/man/draw_polygon_donut_node_base.Rd | 2 cograph-2.1.1/cograph/man/edge_centrality.Rd | 25 cograph-2.1.1/cograph/man/edge_reciprocity.Rd |only cograph-2.1.1/cograph/man/estrada_index.Rd |only cograph-2.1.1/cograph/man/extract_motifs.Rd | 44 cograph-2.1.1/cograph/man/figures/README-donuts-1.jpeg |binary cograph-2.1.1/cograph/man/figures/README-tna-plot-1.jpeg |binary cograph-2.1.1/cograph/man/fit_degree_distribution.Rd |only cograph-2.1.1/cograph/man/from_tna.Rd | 2 cograph-2.1.1/cograph/man/get_donut_base_vertices.Rd | 1 cograph-2.1.1/cograph/man/group_centrality.Rd |only cograph-2.1.1/cograph/man/is_bipartite.Rd |only cograph-2.1.1/cograph/man/k_shortest_paths.Rd |only cograph-2.1.1/cograph/man/membership.Rd |only cograph-2.1.1/cograph/man/motif_census.Rd | 3 cograph-2.1.1/cograph/man/motifs.Rd | 60 cograph-2.1.1/cograph/man/neighborhood_overlap.Rd |only cograph-2.1.1/cograph/man/network_summary.Rd | 2 cograph-2.1.1/cograph/man/plot-mlvar.Rd |only cograph-2.1.1/cograph/man/plot.cograph_core_periphery.Rd |only cograph-2.1.1/cograph/man/plot.cograph_degree_fit.Rd |only cograph-2.1.1/cograph/man/plot.cograph_motif_analysis.Rd | 58 cograph-2.1.1/cograph/man/plot.cograph_motifs.Rd | 16 cograph-2.1.1/cograph/man/plot.cograph_rich_club.Rd |only cograph-2.1.1/cograph/man/plot.cograph_vulnerability.Rd |only cograph-2.1.1/cograph/man/plot_bootstrap_forest.Rd | 12 cograph-2.1.1/cograph/man/plot_centrality_distribution.Rd |only cograph-2.1.1/cograph/man/plot_degree_correlation.Rd |only cograph-2.1.1/cograph/man/plot_edge_weights.Rd |only cograph-2.1.1/cograph/man/plot_net_bootstrap_group.Rd |only cograph-2.1.1/cograph/man/plot_net_stability.Rd |only cograph-2.1.1/cograph/man/plot_network_evolution.Rd |only cograph-2.1.1/cograph/man/plot_simplicial.Rd | 9 cograph-2.1.1/cograph/man/plot_temporal.Rd |only cograph-2.1.1/cograph/man/print.cograph_degree_fit.Rd |only cograph-2.1.1/cograph/man/project_bipartite.Rd |only cograph-2.1.1/cograph/man/reaching_global.Rd |only cograph-2.1.1/cograph/man/render_nodes_splot.Rd | 2 cograph-2.1.1/cograph/man/rich_club.Rd |only cograph-2.1.1/cograph/man/rich_club_local.Rd |only cograph-2.1.1/cograph/man/shortest_paths.Rd |only cograph-2.1.1/cograph/man/simmelian_strength.Rd |only cograph-2.1.1/cograph/man/splot.Rd | 163 cograph-2.1.1/cograph/man/splot.tna_bootstrap.Rd | 9 cograph-2.1.1/cograph/man/subdivide_polygon.Rd |only cograph-2.1.1/cograph/man/subgraphs.Rd | 7 cograph-2.1.1/cograph/man/trophic_incoherence.Rd |only cograph-2.1.1/cograph/man/vulnerability.Rd |only cograph-2.1.1/cograph/tests/testthat/helper-test-utils.R | 18 cograph-2.1.1/cograph/tests/testthat/test-assortativity.R |only cograph-2.1.1/cograph/tests/testthat/test-audit-fixes.R |only cograph-2.1.1/cograph/tests/testthat/test-centrality-batch3.R |only cograph-2.1.1/cograph/tests/testthat/test-centrality-equivalence-report.R |only cograph-2.1.1/cograph/tests/testthat/test-centrality-extended.R |only cograph-2.1.1/cograph/tests/testthat/test-centrality-zoo.R |only cograph-2.1.1/cograph/tests/testthat/test-coverage-100pct-final.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-100pct-v2.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-100pct.R | 27 cograph-2.1.1/cograph/tests/testthat/test-coverage-aes-edges-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-aes-nodes-42.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-centrality-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-class-layout-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-class-network-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-class-network-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-cluster-metrics-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-cluster-metrics-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-cograph-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-cograph-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-communities-40.R | 101 cograph-2.1.1/cograph/tests/testthat/test-coverage-communities-41.R | 78 cograph-2.1.1/cograph/tests/testthat/test-coverage-from-qgraph-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-input-igraph-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-input-igraph-42.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-input-parse-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-input-qgraph-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-input-statnet-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-input-tna-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-layout-circle-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-layout-gephi-fr-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-layout-groups-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-layout-groups-42.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-layout-oval-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-layout-registry-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-layout-registry-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-layout-spring-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-methods-plot-42.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-methods-print-40.R | 20 cograph-2.1.1/cograph/tests/testthat/test-coverage-methods-print-42.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-mlna-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-mlna-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-motifs-40.R | 30 cograph-2.1.1/cograph/tests/testthat/test-coverage-motifs-41.R | 6 cograph-2.1.1/cograph/tests/testthat/test-coverage-motifs-43.R | 38 cograph-2.1.1/cograph/tests/testthat/test-coverage-motifs-44.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-network-summary-40.R | 28 cograph-2.1.1/cograph/tests/testthat/test-coverage-network-utils-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-network-utils-42.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-output-save-41.R | 20 cograph-2.1.1/cograph/tests/testthat/test-coverage-output-save-43.R | 4 cograph-2.1.1/cograph/tests/testthat/test-coverage-palettes-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-bootstrap-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-compare-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-heatmap-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-hon-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-htna-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-htna-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-htna-multi-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-htna-multi-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-mcml-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-mcml-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-mcml-42.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-ml-heatmap-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-ml-heatmap-41.R | 4 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-nestimate-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-permutation-40.R | 4 cograph-2.1.1/cograph/tests/testthat/test-coverage-plot-transitions-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-render-edges-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-render-grid-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-render-grid-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-render-grid-42.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-render-nodes-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-render-nodes-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-round5.R | 8 cograph-2.1.1/cograph/tests/testthat/test-coverage-round6.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-round7.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-scale-constants-43.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-shapes-registry-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-shapes-registry-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-shapes-svg-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-sonplot-qgraph-geometry-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-splot-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-splot-42.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-splot-arrows-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-splot-edges-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-splot-geometry-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-splot-labels-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-splot-nodes-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-splot-params-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-splot-polygons-41.R | 20 cograph-2.1.1/cograph/tests/testthat/test-coverage-themes-registry-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-themes-registry-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-tplot-40.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-utils-colors-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-utils-deprecation-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-utils-geometry-43.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-utils-validation-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-coverage-zzz-41.R | 2 cograph-2.1.1/cograph/tests/testthat/test-equiv-assortativity.R |only cograph-2.1.1/cograph/tests/testthat/test-equiv-cluster-quality.R |only cograph-2.1.1/cograph/tests/testthat/test-equiv-communities.R |only cograph-2.1.1/cograph/tests/testthat/test-equiv-disparity.R |only cograph-2.1.1/cograph/tests/testthat/test-equiv-edge-centrality.R |only cograph-2.1.1/cograph/tests/testthat/test-equiv-network-summary.R |only cograph-2.1.1/cograph/tests/testthat/test-equiv-robustness.R |only cograph-2.1.1/cograph/tests/testthat/test-equiv-standalone-measures.R |only cograph-2.1.1/cograph/tests/testthat/test-integer-weight-labels.R |only cograph-2.1.1/cograph/tests/testthat/test-motifs-equivalence.R | 36 cograph-2.1.1/cograph/tests/testthat/test-network-summary.R | 111 cograph-2.1.1/cograph/tests/testthat/test-plot-chord.R | 5 cograph-2.1.1/cograph/tests/testthat/test-plot-mlvar.R |only cograph-2.1.1/cograph/tests/testthat/test-rich-club-equivalence.R |only cograph-2.1.1/cograph/tests/testthat/test-tier2-cross-package.R |only cograph-2.1.1/cograph/tests/testthat/test-tier2-equivalence.R |only cograph-2.1.1/cograph/tests/testthat/test-tier2-features.R |only cograph-2.1.1/cograph/tests/testthat/test-tna-temporal.R | 2 cograph-2.1.1/cograph/vignettes/articles/1_cograph-tutorial-plotting.qmd |only cograph-2.1.1/cograph/vignettes/articles/2_why-cograph.Rmd |only cograph-2.1.1/cograph/vignettes/articles/3_plotting-tna-models.Rmd |only cograph-2.1.1/cograph/vignettes/articles/bootstrap-forest.Rmd |only cograph-2.1.1/cograph/vignettes/articles/cograph-tutorial-communities.qmd |only cograph-2.1.1/cograph/vignettes/articles/cograph-tutorial-nestimate.qmd |only cograph-2.1.1/cograph/vignettes/articles/mcml-examples.Rmd | 2 cograph-2.1.1/cograph/vignettes/articles/qgraph-to-splot.Rmd |only cograph-2.1.1/cograph/vignettes/introduction.Rmd | 527 +-- 319 files changed, 6774 insertions(+), 2120 deletions(-)
Title: Extracts Risk Neutral Densities of Prices, Money Market Rates
and Government Bond Yields from Fixed Income Options Prices
Description: Provides with parametric risk neutral densities and cumulative densities for futures prices on fixed-income products. It relies on options on Short Term Interest Rate futures contracts or options on government bond futures contracts. It models the price of the underlying asset as a mixture of either two or three lognormal densities. It also offers new functions which provide with risk neutral densities and cumulative densities of the money market rate or the government bond yield inferred from the futures contract's price, using the density of the futures price. The package leverages on the works of Melick, W. R. and Thomas, C. P. (1997) <doi:10.2307/2331318> and B. Bahra (1998) <doi:10.2139/ssrn.77429>.
Author: William Arrata [aut, cre]
Maintainer: William Arrata <william.arrata@gmail.com>
Diff between yrnd versions 0.1.1 dated 2026-03-15 and 0.1.2 dated 2026-04-15
DESCRIPTION | 10 MD5 | 36 NAMESPACE | 2 R/bond_future_charac_bbg.R | 2 R/bond_future_price.R | 16 R/ctd_bond_yield.R | 22 R/globals.R | 3 R/option_prices_bbg.R |only R/stir_future_price.R | 15 R/stir_rate.R | 54 inst/doc/yrnd_functions.R | 117 inst/doc/yrnd_functions.Rmd | 132 inst/doc/yrnd_functions.html |54878 +++++++++++++++++++++++++++++++++++++++++- man/bond_future_charac_bbg.Rd | 2 man/bond_future_price.Rd | 4 man/ctd_bond_yield.Rd | 4 man/option_prices_bbg.Rd |only man/stir_future_price.Rd | 4 man/stir_rate.Rd | 8 vignettes/yrnd_functions.Rmd | 132 20 files changed, 55311 insertions(+), 130 deletions(-)
Title: Rendering Font into 'data.frame'
Description: Extract glyph information from font data, and translate the
outline curves to flattened paths or tessellated polygons. The converted
data is returned as a 'data.frame' in easy-to-plot format.
Author: Hiroaki Yutani [aut, cre] ,
The authors of the dependency Rust crates [ctb]
Maintainer: Hiroaki Yutani <yutani.ini@gmail.com>
Diff between string2path versions 0.3.0 dated 2026-04-13 and 0.3.1 dated 2026-04-15
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ configure | 8 ++++++++ src/Makevars.in | 7 ++++++- 5 files changed, 27 insertions(+), 8 deletions(-)
Title: Get XKCD Comic from R
Description: Visualize your favorite XKCD comic strip directly from R.
Includes full-text search with BM25 ranking and semantic similarity search
via local 'GloVe' embeddings, powered by a local 'DuckDB' cache.
Author: Paolo Sonego [aut, cph, cre],
Mikko Korpela [aut]
Maintainer: Paolo Sonego <paolo.sonego@gmail.com>
Diff between RXKCD versions 1.9.2 dated 2020-02-24 and 2.0.1 dated 2026-04-15
RXKCD-1.9.2/RXKCD/inst |only RXKCD-1.9.2/RXKCD/man/saveConfig.Rd |only RXKCD-2.0.1/RXKCD/DESCRIPTION | 40 + RXKCD-2.0.1/RXKCD/MD5 | 17 RXKCD-2.0.1/RXKCD/NAMESPACE | 14 RXKCD-2.0.1/RXKCD/R/getXKCD.R | 699 +++++++++++++++++++--------------- RXKCD-2.0.1/RXKCD/README.md | 48 +- RXKCD-2.0.1/RXKCD/man/getXKCD.Rd | 58 -- RXKCD-2.0.1/RXKCD/man/searchXKCD.Rd | 30 - RXKCD-2.0.1/RXKCD/man/similarXKCD.Rd |only RXKCD-2.0.1/RXKCD/man/updateConfig.Rd | 17 11 files changed, 518 insertions(+), 405 deletions(-)
Title: Phylogenetic Tree Models and the Power of Tree Shape Statistics
Description: The first goal of this package is to provide a multitude of tree models,
i.e., functions that generate rooted binary trees with a given number of leaves.
Second, the package allows for an easy evaluation and comparison of tree shape
statistics by estimating their power to differentiate between different tree models.
Please note that this R package was developed alongside the manuscript
'Tree balance in phylogenetic models' by
S. J. Kersting, K. Wicke, and M. Fischer (2025) <doi:10.1098/rstb.2023.0303>,
which provides further background and the respective mathematical definitions.
This project was supported by the project ArtIGROW, which is a part of the
WIR!-Alliance ArtIFARM – Artificial Intelligence in Farming funded by the
German Federal Ministry of Education and Research (No. 03WIR4805).
Author: Sophie Kersting [aut, cre] ,
Kristina Wicke [aut] ,
Mareike Fischer [aut]
Maintainer: Sophie Kersting <sophie.kersting@uni-greifswald.de>
Diff between poweRbal versions 0.0.1.1 dated 2024-08-16 and 0.1.0 dated 2026-04-15
DESCRIPTION | 27 - MD5 | 96 ++-- NAMESPACE | 76 +-- R/poweRbal_data-methods.R | 91 +--- R/powerCompare.R | 191 +++++---- R/powerCompute.R | 21 - R/powerData.R | 279 ++++++------- R/powerRegAcc.R | 771 ++++++++++++++++++++++++-------------- R/powerShow.R | 36 - R/reenumNodes.R | 366 +++++++++--------- R/tmAldousBeta.R | 19 R/tmAll.R | 244 ++++-------- R/tmAltBirthDeath.R | 118 +++-- R/tmBISSE.R | 90 +++- R/tmComb.R | 9 R/tmDensity.R | 148 ++++--- R/tmETM.R | 2 R/tmFordsAlpha.R | 19 R/tmGFB.R | 2 R/tmGrowNoExtDT.R | 465 ++++++++++++---------- R/tmMB.R | 2 R/tmPDA.R | 2 R/tmYule.R | 2 R/tssGetInfo.R | 341 ++++++++-------- R/tssInfo.R | 448 +++++++++++----------- inst/CITATION | 22 - man/generateTrees.Rd | 296 +++++++------- man/poweRbal_data-plot.Rd | 210 +++++----- man/poweRbal_data-printsummary.Rd | 126 +++--- man/powerCompare.Rd | 360 +++++++++-------- man/powerCompute.Rd | 100 ++-- man/powerData.Rd | 154 +++---- man/powerRegAcc.Rd | 452 +++++++++++----------- man/powerShow.Rd | 66 +-- man/reenumNodes.Rd | 94 ++-- man/tmAldous.Rd | 102 ++--- man/tmAltBirthDeath.Rd | 114 +++-- man/tmBiSSE.Rd | 151 +++---- man/tmComb.Rd | 64 +-- man/tmDensity.Rd | 112 +++-- man/tmETM.Rd | 74 +-- man/tmFord.Rd | 108 ++--- man/tmGFB.Rd | 66 +-- man/tmGrowNoExtDT.Rd | 410 ++++++++++---------- man/tmMB.Rd | 66 +-- man/tmPDA.Rd | 78 +-- man/tmYule.Rd | 82 ++-- man/tssGetInfo.Rd | 186 ++++----- man/tssInfo.Rd | 100 ++-- 49 files changed, 3903 insertions(+), 3555 deletions(-)
Title: Statistical Analysis in Epidemiology
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data. In
particular representation, manipulation, rate estimation and
simulation for multistate data - the Lexis suite of functions, which
includes interfaces to 'mstate', 'etm' and 'cmprsk' packages.
Contains functions for Age-Period-Cohort and Lee-Carter modeling and
a function for interval censored data. Has functions for extracting
and manipulating parameter estimates and predicted values (ci.lin
and its cousins), as well as a number of epidemiological data sets.
Author: Bendix Carstensen [aut, cre],
Martyn Plummer [aut],
Esa Laara [ctb],
Michael Hills [ctb]
Maintainer: Bendix Carstensen <b@bxc.dk>
Diff between Epi versions 2.64 dated 2026-03-26 and 2.65 dated 2026-04-15
Epi-2.64/Epi/R/summary.Lexis.r |only Epi-2.64/Epi/inst/doc/index.html |only Epi-2.64/Epi/vignettes/01flup-Ieff.pdf |only Epi-2.64/Epi/vignettes/01flup-IeffR.pdf |only Epi-2.64/Epi/vignettes/01flup-box1.pdf |only Epi-2.64/Epi/vignettes/01flup-box4.pdf |only Epi-2.64/Epi/vignettes/01flup-dmL1.pdf |only Epi-2.64/Epi/vignettes/01flup-dmL2.pdf |only Epi-2.64/Epi/vignettes/01flup-dur-int-RR.pdf |only Epi-2.64/Epi/vignettes/01flup-dur-int.pdf |only Epi-2.64/Epi/vignettes/01flup-ins-time.pdf |only Epi-2.64/Epi/vignettes/01flup-mbox.pdf |only Epi-2.64/Epi/vignettes/01flup-mboxr.pdf |only Epi-2.64/Epi/vignettes/01flup-pr-a.pdf |only Epi-2.64/Epi/vignettes/01flup-sep-HR.pdf |only Epi-2.64/Epi/vignettes/01flup-sep-mort.pdf |only Epi-2.64/Epi/vignettes/01flup.R |only Epi-2.64/Epi/vignettes/01flup.pdf |only Epi-2.64/Epi/vignettes/02addLexis.R |only Epi-2.64/Epi/vignettes/02addLexis.pdf |only Epi-2.64/Epi/vignettes/03crisk-Sr1.pdf |only Epi-2.64/Epi/vignettes/03crisk-Sr2.pdf |only Epi-2.64/Epi/vignettes/03crisk-boxes.pdf |only Epi-2.64/Epi/vignettes/03crisk-boxes4.pdf |only Epi-2.64/Epi/vignettes/03crisk-boxes5.pdf |only Epi-2.64/Epi/vignettes/03crisk-cR.pdf |only Epi-2.64/Epi/vignettes/03crisk-crates.pdf |only Epi-2.64/Epi/vignettes/03crisk-difrat.pdf |only Epi-2.64/Epi/vignettes/03crisk-difratx.pdf |only Epi-2.64/Epi/vignettes/03crisk-rates-ci.pdf |only Epi-2.64/Epi/vignettes/03crisk-rates-l.pdf |only Epi-2.64/Epi/vignettes/03crisk-rates.pdf |only Epi-2.64/Epi/vignettes/03crisk-stack-ci.pdf |only Epi-2.64/Epi/vignettes/03crisk-stack.pdf |only Epi-2.64/Epi/vignettes/03crisk.R |only Epi-2.64/Epi/vignettes/03crisk.pdf |only Epi-2.64/Epi/vignettes/04simLexis-boxes.pdf |only Epi-2.64/Epi/vignettes/04simLexis-comp-0.pdf |only Epi-2.64/Epi/vignettes/04simLexis-mort-int.pdf |only Epi-2.64/Epi/vignettes/04simLexis-pstate0.pdf |only Epi-2.64/Epi/vignettes/04simLexis-pstatex.pdf |only Epi-2.64/Epi/vignettes/04simLexis-pstatey.pdf |only Epi-2.64/Epi/vignettes/04simLexis.R |only Epi-2.64/Epi/vignettes/04simLexis.pdf |only Epi-2.64/Epi/vignettes/05yll-imm.pdf |only Epi-2.64/Epi/vignettes/05yll-states.pdf |only Epi-2.64/Epi/vignettes/05yll-sus.pdf |only Epi-2.64/Epi/vignettes/05yll-tot.pdf |only Epi-2.64/Epi/vignettes/05yll.R |only Epi-2.64/Epi/vignettes/05yll.pdf |only Epi-2.65/Epi/CHANGES | 30 +---- Epi-2.65/Epi/DESCRIPTION | 8 - Epi-2.65/Epi/MD5 | 94 ++++------------ Epi-2.65/Epi/NAMESPACE | 1 Epi-2.65/Epi/R/adtte2Lexis.R |only Epi-2.65/Epi/R/overlap.Lexis.R | 1 Epi-2.65/Epi/R/stack.Lexis.R | 13 +- Epi-2.65/Epi/R/summary.Lexis.R |only Epi-2.65/Epi/inst/doc/00Index.html |only Epi-2.65/Epi/inst/doc/01flup.pdf |binary Epi-2.65/Epi/inst/doc/02addLexis.pdf |binary Epi-2.65/Epi/inst/doc/03crisk.R | 74 ++++++------- Epi-2.65/Epi/inst/doc/03crisk.pdf |binary Epi-2.65/Epi/inst/doc/04simLexis.R | 4 Epi-2.65/Epi/inst/doc/04simLexis.pdf |binary Epi-2.65/Epi/inst/doc/05yll.pdf |binary Epi-2.65/Epi/man/adtte2Lexis.Rd |only Epi-2.65/Epi/man/summary.Lexis.Rd | 38 ++++-- Epi-2.65/Epi/vignettes/01flup.tex | 10 - Epi-2.65/Epi/vignettes/02addLexis.tex | 16 +- Epi-2.65/Epi/vignettes/03crisk.rnw | 17 +-- Epi-2.65/Epi/vignettes/03crisk.tex | 140 ++++++++++++------------- Epi-2.65/Epi/vignettes/04simLexis.rnw | 20 +-- Epi-2.65/Epi/vignettes/04simLexis.tex | 56 +++++----- Epi-2.65/Epi/vignettes/05yll.tex | 10 - 75 files changed, 251 insertions(+), 281 deletions(-)
Title: Bayesian Spectral Inference for Time Series
Description: Implementations of Bayesian parametric, nonparametric and semiparametric procedures for univariate and multivariate time series. The package is based on the methods presented in C. Kirch et al (2018) <doi:10.1214/18-BA1126>, A. Meier (2018) <https://opendata.uni-halle.de//handle/1981185920/13470> and Y. Tang et al (2025) <doi:10.1080/01621459.2025.2594191>. It was supported by DFG grants KI 1443/3-1 and KI 1443/3-2.
Author: Alexander Meier [aut],
Claudia Kirch [aut],
Matthew C. Edwards [aut],
Renate Meyer [aut, cre],
Yifu Tang [aut]
Maintainer: Renate Meyer <renate.meyer@auckland.ac.nz>
Diff between beyondWhittle versions 1.3.0 dated 2024-11-25 and 1.3.1 dated 2026-04-15
DESCRIPTION | 12 ++-- MD5 | 22 ++++---- R/dynamicWhittle_MCMC_zigzag.R | 6 +- R/dynamicWhittle_miscellanea_zigzag.R | 6 +- R/dynamicWhittle_prior_and_mcmc_params.R | 81 +++++++++++++------------------ man/bdp_dw_bayes_factor_k1.Rd | 8 +-- man/bdp_dw_mcmc.Rd | 6 +- man/beyondWhittle-package.Rd | 8 +-- man/gibbs_bdp_dw.Rd | 8 +-- man/local_moving_FT_zigzag.Rd | 6 +- man/psd_tvarma12.Rd | 35 ++++++------- man/sim_tvarma12.Rd | 30 +++-------- 12 files changed, 101 insertions(+), 127 deletions(-)
Title: Classification and Scoring of U.S. County and ZIP Code Rurality
Description: Provides USDA Rural-Urban Continuum Codes (RUCC 2023),
Rural-Urban Commuting Area codes (RUCA 2020), and a composite rurality
score for all U.S. counties. Functions enable lookup by FIPS code,
ZIP code, or county name, and easy merging with existing datasets.
Data sources include the USDA Economic Research Service, U.S. Census
Bureau American Community Survey, and Census TIGER/Line shapefiles.
Author: Cameron Wimpy [aut, cre]
Maintainer: Cameron Wimpy <cwimpy@astate.edu>
Diff between rurality versions 0.1.0 dated 2026-04-10 and 0.1.1 dated 2026-04-15
DESCRIPTION | 6 ++--- MD5 | 11 ++++++---- NEWS.md |only README.md | 17 +++++++++++++++- data/county_rurality.rda |binary inst/doc/rurality.html | 48 +++++++++++++++++++++++------------------------ man/figures |only 7 files changed, 50 insertions(+), 32 deletions(-)
Title: Gathering Metadata About Publications, Grants, Clinical Trials
from 'PubMed' Database
Description: A set of tools to extract bibliographic content from 'PubMed' database
using 'NCBI' REST API <https://www.ncbi.nlm.nih.gov/home/develop/api/>.
It includes functions to search, download, and convert 'PubMed' bibliographic
records into data frames compatible with the 'bibliometrix' package.
Features include programmatic query building, batch downloading by PMID,
citation enrichment via 'NCBI' E-Link, and robust error handling with
automatic retry logic.
Author: Massimo Aria [aut, cre]
Maintainer: Massimo Aria <massimo.aria@gmail.com>
Diff between pubmedR versions 0.0.3 dated 2020-07-09 and 1.0.0 dated 2026-04-15
DESCRIPTION | 23 + MD5 | 42 ++- NAMESPACE | 6 NEWS | 93 +++++++ R/pmApi2df.R | 333 +++++++++++++++------------- R/pmApiRequest.R | 205 +++++++++-------- R/pmCitedBy.R |only R/pmCollect.R |only R/pmFetchById.R |only R/pmQueryBuild.R |only R/pmQueryTotalCount.R | 119 +++++----- R/utils.R |only build/vignette.rds |binary inst/doc/A_Brief_Example.Rmd | 459 ++++++++++++++++---------------------- inst/doc/A_Brief_Example.html | 497 ++++++++++++++++++++---------------------- man/pmApi2df.Rd | 4 man/pmApiRequest.Rd | 23 + man/pmCitedBy.Rd |only man/pmCollect.Rd |only man/pmEnrichCitations.Rd |only man/pmFetchById.Rd |only man/pmQueryBuild.Rd |only man/pmQueryTotalCount.Rd | 13 - man/pmReferences.Rd |only tests |only vignettes/A_Brief_Example.Rmd | 459 ++++++++++++++++---------------------- 26 files changed, 1149 insertions(+), 1127 deletions(-)
Title: Multivariate Normal and t Distributions
Description: Computes multivariate normal and t probabilities, quantiles, random deviates,
and densities. Log-likelihoods for multivariate Gaussian models and Gaussian copulae
parameterised by Cholesky factors of covariance or precision matrices are implemented
for interval-censored and exact data, or a mix thereof. Score functions for these
log-likelihoods are available. A class representing multiple lower triangular matrices
and corresponding methods are part of this package.
Author: Alan Genz [aut],
Frank Bretz [aut],
Tetsuhisa Miwa [aut],
Xuefei Mi [aut],
Friedrich Leisch [ctb],
Fabian Scheipl [ctb],
Bjoern Bornkamp [ctb] ,
Martin Maechler [ctb] ,
Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mvtnorm versions 1.3-6 dated 2026-03-15 and 1.3-7 dated 2026-04-15
DESCRIPTION | 8 MD5 | 52 NAMESPACE | 5 R/interface.R | 324 +++-- R/lpmvnorm.R | 151 +- R/ltMatrices.R | 157 +- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 20 inst/doc/MVT_Rnews.R | 2 inst/doc/MVT_Rnews.pdf |binary inst/doc/lmvnorm_src.R | 101 - inst/doc/lmvnorm_src.Rnw | 2571 +++++++++++++++++++++++----------------- inst/doc/lmvnorm_src.pdf |binary man/lpmvnorm.Rd | 18 src/lpmvnorm.c | 44 tests/bugfix-tests.Rout.save | 4 tests/dmvnorm-Ex.R | 102 + tests/dpmvnorm-Ex.R |only tests/plmvnorm-Ex.Rout.save | 4 tests/pmvnorm-Ex.R |only tests/regtest-TVPACK.Rout.save | 4 tests/regtest-scores.Rout.save | 4 tests/regtest_coef.R |only tests/regtest_coef.Rout.save |only tests/slpmvnorm.R | 16 tests/test-noisy-root.Rout.save | 4 vignettes/lmvnorm_src.Rnw | 2571 +++++++++++++++++++++++----------------- vignettes/lmvnorm_src.Rout.save | 137 +- 29 files changed, 3800 insertions(+), 2499 deletions(-)
Title: Marginal Modeling for Exposure Data with Values Below the LOD
Description: Functions of marginal mean and quantile regression models are used to analyze environmental exposure and biomonitoring data with repeated measurements and non-detects (i.e., values below the limit of detection (LOD)), as well as longitudinal exposure data that include non-detects and time-dependent covariates. For more details see Chen IC, Bertke SJ, Curwin BD (2021) <doi:10.1038/s41370-021-00345-1>, Chen IC, Bertke SJ, Estill CF (2024) <doi:10.1038/s41370-024-00640-7>, Chen IC, Bertke SJ, Dahm MM (2024) <doi:10.1093/annweh/wxae068>, and Chen IC (2025) <doi:10.1038/s41370-025-00752-8>.
Author: I-Chen Chen [cre, aut] ,
Philip Westgate [ctb],
Liya Fu [ctb]
Maintainer: I-Chen Chen <flecsh@gmail.com>
Diff between marlod versions 0.2.2 dated 2025-10-18 and 0.2.3 dated 2026-04-15
DESCRIPTION | 10 ++--- MD5 | 6 +-- NEWS.md | 69 ++++++++++++++++++++------------------- inst/doc/marlod.html | 90 +++++++++++++++++++++++++-------------------------- 4 files changed, 90 insertions(+), 85 deletions(-)
Title: Diagnostics for OMOP Common Data Model Drug Records
Description: Ingredient specific diagnostics for drug exposure records in the Observational Medical Outcomes Partnership (OMOP) common data model.
Author: Ger Inberg [aut, cre] ,
Edward Burn [aut] ,
Theresa Burkard [aut] ,
Yuchen Guo [ctb] ,
Marti Catala [ctb] ,
Mike Du [ctb] ,
Xintong Li [ctb] ,
Ross Williams [ctb] ,
Erasmus MC [cph]
Maintainer: Ger Inberg <g.inberg@erasmusmc.nl>
Diff between DrugExposureDiagnostics versions 1.1.6 dated 2026-02-16 and 1.1.7 dated 2026-04-15
DESCRIPTION | 6 - MD5 | 24 +++---- NEWS.md | 4 + R/dataPlotPanel.R | 62 ++++++++++++-------- R/executeChecks.R | 2 R/obscureCounts.R | 5 + R/shinyApp.R | 2 R/summariseChecks.R | 22 +++++-- inst/doc/DrugSig.html | 2 inst/doc/IntroductionToDrugExposureDiagnostics.html | 6 - man/summariseChecks.Rd | 5 + tests/testthat/test-SummariseChecks.R | 21 +++++- tests/testthat/test-SyntheaSqlServer.R | 2 13 files changed, 106 insertions(+), 57 deletions(-)
More information about DrugExposureDiagnostics at CRAN
Permanent link
Title: Header-Only 'C++' and 'R' Interface
Description: Provides a header only, 'C++' interface to 'R' with enhancements over 'cpp11'. Enforces copy-on-write
semantics consistent with 'R' behavior. Offers native support for ALTREP objects, 'UTF-8' string handling, modern
'C++11' features and idioms, and reduced memory requirements. Allows for vendoring, making it useful for restricted
environments. Compared to 'cpp11', it adds support for converting 'C++' maps to 'R' lists, 'Roxygen' documentation
directly in 'C++' code, proper handling of matrix attributes, support for nullable external pointers, bidirectional
copy of complex number types, flexibility in type conversions, use of nullable pointers, and various performance
optimizations.
Author: Mauricio Vargas Sepulveda [aut, cre] ,
Posit Software, PBC [aut]
Maintainer: Mauricio Vargas Sepulveda <m.vargas.sepulveda@gmail.com>
Diff between cpp4r versions 0.5.0 dated 2026-04-13 and 0.5.1 dated 2026-04-15
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ inst/include/cpp4r/function.hpp | 4 ++-- 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Bayesian Hierarchical Models for Basket Trials
Description: Provides functions for the evaluation of basket
trial designs with binary endpoints. Operating characteristics of a
basket trial design are assessed by simulating trial data according to
scenarios, analyzing the data with Bayesian hierarchical models (BHMs), and
assessing decision probabilities on stratum and trial-level based on Go / No-go decision making.
The package is build for high flexibility regarding decision rules,
number of interim analyses, number of strata, and recruitment.
The BHMs proposed by
Berry et al. (2013) <doi:10.1177/1740774513497539>
and Neuenschwander et al. (2016) <doi:10.1002/pst.1730>,
as well as a model that combines both approaches are implemented.
Functions are provided to implement Bayesian decision rules as for example
proposed by Fisch et al. (2015) <doi:10.1177/2168479014533970>.
In addition, posterior point estimates (mean/median) and credible intervals
for response rates and some model parameters can be calculated.
For simulated tri [...truncated...]
Author: Stephan Wojciekowski [aut, cre],
Tathagata Chattopadhyay [aut]
Maintainer: Stephan Wojciekowski <stephan.wojciekowski@boehringer-ingelheim.com>
Diff between bhmbasket versions 1.0.0 dated 2026-02-21 and 1.1.0 dated 2026-04-15
DESCRIPTION | 9 MD5 | 51 - NAMESPACE | 1 NEWS.md | 8 R/AnalysisFunctions.R | 1040 ++++++++++++++++++-------------- R/DataFunctions.R | 348 +++++----- R/OCFunctions.R | 514 ++++++++------- R/PriorFunctions.R | 1022 +++++++++++++++++++++---------- README.md | 22 inst/WORDLIST | 38 - inst/doc/Running_bhmbasket_on_HPC.html | 4 inst/doc/reproduceExNex.html | 4 inst/jags_models/exnex_adj_mix.txt |only inst/jags_models/exnex_mix.txt |only man/getAverageNSubjects.Rd | 4 man/getEstimates.Rd | 7 man/getGoDecisions.Rd | 15 man/getPriorParameters.Rd | 28 man/performAnalyses.Rd | 13 man/saveScenarios.Rd | 4 man/setPriorParametersExNex.Rd | 60 + man/setPriorParametersExNexAdj.Rd | 75 ++ man/setPriorParametersStratifiedMix.Rd |only tests/testthat/test-AnalysisFunctions.R | 622 ++++++++++++------- tests/testthat/test-DataFunctions.R | 126 +-- tests/testthat/test-Misc.R | 222 +++--- tests/testthat/test-OCFunctions.R | 192 ++--- tests/testthat/test-PriorFunctions.R | 94 +- 28 files changed, 2731 insertions(+), 1792 deletions(-)
Title: Functions and Data for the Book 'Applied Hierarchical Modeling
in Ecology' Vols 1 and 2
Description: Provides functions to simulate data sets from hierarchical ecological models, including all the simulations described in the two volume publication 'Applied Hierarchical Modeling in Ecology: Analysis of distribution, abundance and species richness in R and BUGS' by Marc Kéry and Andy Royle: volume 1 (2016, ISBN: 978-0-12-801378-6) and volume 2 (2021, ISBN: 978-0-12-809585-0), <https://www.mbr-pwrc.usgs.gov/pubanalysis/keryroylebook/>. It also has all the utility functions and data sets needed to replicate the analyses shown in the books.
Author: Marc Kery [aut],
Andy Royle [aut],
Mike Meredith [aut],
Ken Kellner [ctb, cre] ,
Urs Breitenmoser [dtc] ,
Richard Chandler [ctb],
Bob Dorazio [ctb],
Evan Grant [dtc] ,
John-Andren Henden [dtc] ,
Roland Kays [dtc] ,
David King [dtc] ,
Xavier Lambin [d [...truncated...]
Maintainer: Ken Kellner <contact@kenkellner.com>
Diff between AHMbook versions 0.2.10 dated 2024-09-11 and 0.2.12 dated 2026-04-15
DESCRIPTION | 15 ++++++++------- MD5 | 2 +- 2 files changed, 9 insertions(+), 8 deletions(-)
Title: Additional Operators for Image Models
Description: Implements additional operators for computer vision models, including
operators necessary for image segmentation and object detection deep learning
models.
Author: Daniel Falbel [aut],
Tomasz Kalinowski [ctb, cre],
RStudio [cph]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>
Diff between torchvisionlib versions 0.6.0 dated 2025-04-14 and 0.8.0 dated 2026-04-15
torchvisionlib-0.6.0/torchvisionlib/inst/include/torchvisionlib/torchvisionlib_types.h |only torchvisionlib-0.8.0/torchvisionlib/DESCRIPTION | 18 +++++----- torchvisionlib-0.8.0/torchvisionlib/MD5 | 5 +- torchvisionlib-0.8.0/torchvisionlib/NEWS.md | 5 ++ 4 files changed, 17 insertions(+), 11 deletions(-)
More information about torchvisionlib at CRAN
Permanent link
Title: Model Menu for Radiant: Business Analytics using R and Shiny
Description: The Radiant Model menu includes interfaces for linear and logistic
regression, naive Bayes, neural networks, classification and regression trees,
model evaluation, collaborative filtering, decision analysis, and simulation.
The application extends the functionality in 'radiant.data'.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between radiant.model versions 1.6.9 dated 2026-01-09 and 1.6.11 dated 2026-04-15
DESCRIPTION | 12 MD5 | 124 +++++++--- NAMESPACE | 9 R/crtree.R | 14 - R/gbt.R | 48 +++ R/logistic.R | 16 + R/nn.R | 22 + R/pdp_vip_compat.R |only R/regress.R | 55 +++- R/rforest.R | 14 - README.md | 37 -- inst/app/tools/analysis/crtree_ui.R | 5 inst/app/tools/analysis/gbt_ui.R | 5 inst/app/tools/analysis/logistic_ui.R | 5 inst/app/tools/analysis/nn_ui.R | 5 inst/app/tools/analysis/regress_ui.R | 5 inst/app/tools/analysis/rforest_ui.R | 7 inst/app/tools/help/crs.md | 2 inst/app/tools/help/dtree.Rmd | 8 inst/app/tools/help/dtree.md | 8 inst/app/tools/help/evalbin.md | 8 inst/app/tools/help/evalreg.md | 6 inst/app/tools/help/figures/cf_summary.png |only inst/app/tools/help/figures/dtree_model.png |only inst/app/tools/help/figures/dtree_plot_final.png |only inst/app/tools/help/figures/dtree_plot_initial.png |only inst/app/tools/help/figures/dtree_sensitivity.png |only inst/app/tools/help/figures/evalbin_confusion.png |only inst/app/tools/help/figures/evalbin_lift_gains.png |only inst/app/tools/help/figures/evalbin_logistic.png |only inst/app/tools/help/figures/evalreg_nn.png |only inst/app/tools/help/figures/evalreg_summary_plot.png |only inst/app/tools/help/figures/logistic_dvd-full.png |only inst/app/tools/help/figures/logistic_dvd.png |only inst/app/tools/help/figures/logistic_plot.png |only inst/app/tools/help/figures/logistic_predict.png |only inst/app/tools/help/figures/logistic_predict_data.png |only inst/app/tools/help/figures/logistic_summary.png |only inst/app/tools/help/figures/mnl_choice_shares.png |only inst/app/tools/help/figures/mnl_plot.png |only inst/app/tools/help/figures/mnl_predict.png |only inst/app/tools/help/figures/mnl_summary.png |only inst/app/tools/help/figures/regress_catalog_F_critical.png |only inst/app/tools/help/figures/regress_catalog_F_test.png |only inst/app/tools/help/figures/regress_catalog_prob_calc.png |only inst/app/tools/help/figures/regress_catalog_summary.png |only inst/app/tools/help/figures/regress_diamonds_corr.png |only inst/app/tools/help/figures/regress_diamonds_dashboard.png |only inst/app/tools/help/figures/regress_diamonds_hist.png |only inst/app/tools/help/figures/regress_diamonds_res_vs_pred.png |only inst/app/tools/help/figures/regress_diamonds_scatter.png |only inst/app/tools/help/figures/regress_ideal_corr.png |only inst/app/tools/help/figures/regress_ideal_dashboard.png |only inst/app/tools/help/figures/regress_ideal_hist.png |only inst/app/tools/help/figures/regress_ideal_res_vs_pred.png |only inst/app/tools/help/figures/regress_ideal_scatter.png |only inst/app/tools/help/figures/regress_ideal_summary.png |only inst/app/tools/help/figures/regress_log_diamonds_corr.png |only inst/app/tools/help/figures/regress_log_diamonds_dashboard.png |only inst/app/tools/help/figures/regress_log_diamonds_hist.png |only inst/app/tools/help/figures/regress_log_diamonds_res_vs_pred.png |only inst/app/tools/help/figures/regress_log_diamonds_scatter.png |only inst/app/tools/help/figures/regress_log_diamonds_summary.png |only inst/app/tools/help/figures/regress_log_diamonds_viz_scatter.png |only inst/app/tools/help/figures/simulater_repeat.png |only inst/app/tools/help/figures/simulater_repeat_plot.png |only inst/app/tools/help/figures/simulater_sim.png |only inst/app/tools/help/figures/simulater_sim_plot.png |only inst/app/tools/help/figures/simulater_view.png |only inst/app/tools/help/logistic.Rmd | 10 inst/app/tools/help/logistic.md | 10 inst/app/tools/help/mnl.Rmd | 8 inst/app/tools/help/mnl.md | 8 inst/app/tools/help/regress.Rmd | 44 +-- inst/app/tools/help/regress.md | 44 +-- inst/app/tools/help/simulater.Rmd | 10 inst/app/tools/help/simulater.md | 10 man/autoplot.partial.Rd |only man/pdp_partial.Rd |only man/pdp_plot.Rd | 16 - man/plot.crtree.Rd | 12 man/plot.gbt.Rd | 12 man/plot.logistic.Rd | 12 man/plot.nn.Rd | 12 man/plot.regress.Rd | 12 man/plot.rforest.Rd | 12 man/pred_plot.Rd | 16 - man/vi_radiant.Rd |only tests/testthat/test_pdp_vip.R |only 89 files changed, 437 insertions(+), 226 deletions(-)
Title: Toolkit for Encryption, Signatures and Certificates Based on
OpenSSL
Description: Bindings to OpenSSL libssl and libcrypto, plus custom SSH key parsers.
Supports RSA, DSA and EC curves P-256, P-384, P-521, and curve25519. Cryptographic
signatures can either be created and verified manually or via x509 certificates.
AES can be used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric
(public key) encryption or EC for Diffie Hellman. High-level envelope functions
combine RSA and AES for encrypting arbitrary sized data. Other utilities include key
generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure random
number generator, and 'bignum' math methods for manually performing crypto
calculations on large multibyte integers.
Author: Jeroen Ooms [aut, cre] ,
Oliver Keyes [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between openssl versions 2.3.5 dated 2026-02-26 and 2.4.0 dated 2026-04-15
DESCRIPTION | 6 ++--- MD5 | 28 ++++++++++++------------- NEWS | 3 ++ R/bcrypt.R | 2 - build/vignette.rds |binary configure | 7 +++--- inst/doc/bignum.html | 32 ++++++++++++++-------------- inst/doc/crypto_hashing.html | 8 +++---- inst/doc/keys.html | 48 +++++++++++++++++++++---------------------- inst/doc/secure_rng.html | 18 ++++++++-------- man/openssl.Rd | 4 +-- man/pbkdf.Rd | 2 - man/reexports.Rd | 2 - src/cert.c | 6 ++--- src/compatibility.h | 3 +- 15 files changed, 87 insertions(+), 82 deletions(-)
Title: Modelling of Extreme Values
Description: Various tools for the analysis of univariate, multivariate and functional extremes. Exact simulation from max-stable processes (Dombry, Engelke and Oesting, 2016, <doi:10.1093/biomet/asw008>, R-Pareto processes for various parametric models, including Brown-Resnick (Wadsworth and Tawn, 2014, <doi:10.1093/biomet/ast042>) and Extremal Student (Thibaud and Opitz, 2015, <doi:10.1093/biomet/asv045>). Threshold selection methods, including Wadsworth (2016) <doi:10.1080/00401706.2014.998345>, and Northrop and Coleman (2014) <doi:10.1007/s10687-014-0183-z>. Multivariate extreme diagnostics. Estimation and likelihoods for univariate extremes, e.g., Coles (2001) <doi:10.1007/978-1-4471-3675-0>.
Author: Leo Belzile [aut, cre] ,
Jennifer L. Wadsworth [aut],
Paul J. Northrop [aut] ,
Raphael Huser [aut] ,
Scott D. Grimshaw [aut] ,
Jin Zhang [ctb],
Michael A. Stephens [ctb],
Art B. Owen [ctb]
Maintainer: Leo Belzile <belzilel@gmail.com>
Diff between mev versions 2.1 dated 2025-11-11 and 2.2 dated 2026-04-15
mev-2.1/mev/R/pickands.R |only mev-2.1/mev/man/plot.mev_shape_rbm.Rd |only mev-2.1/mev/man/plot.mev_thselect_vmetric.Rd |only mev-2.1/mev/man/plot.mev_thselect_wadsworth.Rd |only mev-2.2/mev/DESCRIPTION | 8 mev-2.2/mev/MD5 | 134 - mev-2.2/mev/NAMESPACE | 23 mev-2.2/mev/NEWS.md | 26 mev-2.2/mev/R/Wdiag.R | 2 mev-2.2/mev/R/bias.R | 2089 ++++++++++++++++++------- mev-2.2/mev/R/blocktest.R |only mev-2.2/mev/R/datasets.R | 34 mev-2.2/mev/R/erm.R | 2 mev-2.2/mev/R/extcoef.R | 417 ++++ mev-2.2/mev/R/extremogram.R | 133 + mev-2.2/mev/R/genquantselect.R | 32 mev-2.2/mev/R/gp.R | 116 + mev-2.2/mev/R/infomattest.R | 71 mev-2.2/mev/R/lthill.R | 2 mev-2.2/mev/R/mgplikelihoods.R | 117 + mev-2.2/mev/R/mle.R | 31 mev-2.2/mev/R/mrl.R | 67 mev-2.2/mev/R/penultimate.R | 4 mev-2.2/mev/R/pwm.R |only mev-2.2/mev/R/rmar.R |only mev-2.2/mev/R/taildep.R | 3 mev-2.2/mev/R/tailindex.R | 166 + mev-2.2/mev/R/thselect.R | 366 ++++ mev-2.2/mev/R/vartymetric.R | 287 +++ mev-2.2/mev/build/partial.rdb |binary mev-2.2/mev/build/vignette.rds |binary mev-2.2/mev/data/cheeseborowind.rda |only mev-2.2/mev/data/thames.rda |only mev-2.2/mev/inst/doc/mev-vignette.html | 58 mev-2.2/mev/inst/tinytest/tests_rmar1.R |only mev-2.2/mev/man/abisko.Rd | 2 mev-2.2/mev/man/build.blocks.Rd |only mev-2.2/mev/man/cheeseborowind.Rd |only mev-2.2/mev/man/dot-fit.gpd.rob.Rd | 4 mev-2.2/mev/man/durbin.unif.Rd |only mev-2.2/mev/man/extcoef.Rd | 13 mev-2.2/mev/man/extremo.Rd | 4 mev-2.2/mev/man/fit.gevblock.Rd |only mev-2.2/mev/man/fit.gevblock.marginal.Rd |only mev-2.2/mev/man/fit.gpd.Rd | 10 mev-2.2/mev/man/fit.rlarg.Rd | 2 mev-2.2/mev/man/generate.exponential.Rd |only mev-2.2/mev/man/gev.boot.Rd |only mev-2.2/mev/man/gev2exp.Rd |only mev-2.2/mev/man/gevblock.ll.Rd |only mev-2.2/mev/man/gp.fit.Rd | 10 mev-2.2/mev/man/gpd.boot.Rd | 13 mev-2.2/mev/man/gpd.lmom.Rd | 2 mev-2.2/mev/man/kjtail.Rd | 1 mev-2.2/mev/man/likmgp.Rd | 1 mev-2.2/mev/man/mgp.cll.Rd |only mev-2.2/mev/man/mgp.ll.Rd |only mev-2.2/mev/man/ordexp2gev.Rd |only mev-2.2/mev/man/qqplot.blocksize.Rd |only mev-2.2/mev/man/qqplot.unif.Rd |only mev-2.2/mev/man/qweissman.Rd | 21 mev-2.2/mev/man/rmar1.Rd |only mev-2.2/mev/man/shape.erm.Rd | 2 mev-2.2/mev/man/shape.lthill.Rd | 2 mev-2.2/mev/man/shape.osz.Rd | 2 mev-2.2/mev/man/shape.rbm.Rd | 13 mev-2.2/mev/man/taildep.Rd | 2 mev-2.2/mev/man/test.blocksize.Rd |only mev-2.2/mev/man/test.unif.Rd |only mev-2.2/mev/man/thames.Rd |only mev-2.2/mev/man/thselect.alrs.Rd | 2 mev-2.2/mev/man/thselect.cbm.Rd | 2 mev-2.2/mev/man/thselect.expgqt.Rd | 13 mev-2.2/mev/man/thselect.goks.Rd |only mev-2.2/mev/man/thselect.ksmd.Rd | 2 mev-2.2/mev/man/thselect.mrl.Rd | 7 mev-2.2/mev/man/thselect.pickands.Rd | 5 mev-2.2/mev/man/thselect.samsee.Rd | 2 mev-2.2/mev/man/thselect.vmetric.Rd | 72 mev-2.2/mev/man/thselect.wcvm.Rd |only mev-2.2/mev/man/thselect.wseq.Rd | 15 mev-2.2/mev/man/xacf.Rd |only mev-2.2/mev/man/xdep.xcoef.Rd |only mev-2.2/mev/man/xdep.xindex.Rd | 2 84 files changed, 3583 insertions(+), 831 deletions(-)
Title: 'GGML' Tensor Operations for Machine Learning
Description: Provides 'R' bindings to the 'GGML' tensor library for machine
learning, optimized for 'Vulkan' GPU acceleration with a transparent CPU
fallback. The package features a 'Keras'-like sequential API and a
'PyTorch'-style 'autograd' engine for building, training, and deploying
neural networks. Key capabilities include high-performance 5D tensor
operations, 'f16' precision, and efficient quantization. It supports
native 'ONNX' model import (50+ operators) and 'GGUF' weight loading
from the 'llama.cpp' and 'Hugging Face' ecosystems. Designed for
zero-overhead inference via dedicated weight buffering, it integrates
seamlessly as a 'parsnip' engine for 'tidymodels' and provides
first-class learners for the 'mlr3' framework.
See <https://github.com/ggml-org/ggml> for more information about the
underlying library.
Author: Yuri Baramykov [aut, cre],
Georgi Gerganov [ctb, cph] ,
Jeffrey Quesnelle [ctb, cph] ,
Bowen Peng [ctb, cph] ,
Mozilla Foundation [ctb, cph]
Maintainer: Yuri Baramykov <lbsbmsu@mail.ru>
Diff between ggmlR versions 0.7.0 dated 2026-04-06 and 0.7.2 dated 2026-04-15
ggmlR-0.7.0/ggmlR/inst/doc/autograd-engine.html.asis |only ggmlR-0.7.0/ggmlR/inst/doc/data-parallel-training.html.asis |only ggmlR-0.7.0/ggmlR/inst/doc/embedding-ggmlR.html.asis |only ggmlR-0.7.0/ggmlR/inst/doc/gpu-vulkan.html.asis |only ggmlR-0.7.0/ggmlR/inst/doc/keras-like-api.html.asis |only ggmlR-0.7.0/ggmlR/inst/doc/onnx-import.html.asis |only ggmlR-0.7.0/ggmlR/inst/doc/quantization.html.asis |only ggmlR-0.7.0/ggmlR/tests/testthat/Rplots.pdf |only ggmlR-0.7.0/ggmlR/tests/testthat/setup.R |only ggmlR-0.7.0/ggmlR/tests/testthat/teardown.R |only ggmlR-0.7.0/ggmlR/vignettes/autograd-engine.html.asis |only ggmlR-0.7.0/ggmlR/vignettes/data-parallel-training.html.asis |only ggmlR-0.7.0/ggmlR/vignettes/embedding-ggmlR.html.asis |only ggmlR-0.7.0/ggmlR/vignettes/gpu-vulkan.html.asis |only ggmlR-0.7.0/ggmlR/vignettes/keras-like-api.html.asis |only ggmlR-0.7.0/ggmlR/vignettes/onnx-import.html.asis |only ggmlR-0.7.0/ggmlR/vignettes/quantization.html.asis |only ggmlR-0.7.2/ggmlR/DESCRIPTION | 56 ggmlR-0.7.2/ggmlR/MD5 | 136 ggmlR-0.7.2/ggmlR/NAMESPACE | 11 ggmlR-0.7.2/ggmlR/NEWS.md | 51 ggmlR-0.7.2/ggmlR/R/LearnerClassifGGML.R |only ggmlR-0.7.2/ggmlR/R/LearnerRegrGGML.R |only ggmlR-0.7.2/ggmlR/R/default_mlp.R |only ggmlR-0.7.2/ggmlR/R/keras_api.R | 43 ggmlR-0.7.2/ggmlR/R/mlr3_marshal.R |only ggmlR-0.7.2/ggmlR/R/parsnip_mlp.R |only ggmlR-0.7.2/ggmlR/R/vulkan.R | 11 ggmlR-0.7.2/ggmlR/R/zzz.R | 82 ggmlR-0.7.2/ggmlR/README.md | 94 ggmlR-0.7.2/ggmlR/build/vignette.rds |binary ggmlR-0.7.2/ggmlR/cleanup | 1 ggmlR-0.7.2/ggmlR/cleanup.win | 1 ggmlR-0.7.2/ggmlR/configure | 52 ggmlR-0.7.2/ggmlR/inst/doc/autograd-engine.R |only ggmlR-0.7.2/ggmlR/inst/doc/autograd-engine.Rmd |only ggmlR-0.7.2/ggmlR/inst/doc/autograd-engine.html | 276 - ggmlR-0.7.2/ggmlR/inst/doc/data-parallel-training.R |only ggmlR-0.7.2/ggmlR/inst/doc/data-parallel-training.Rmd |only ggmlR-0.7.2/ggmlR/inst/doc/data-parallel-training.html | 2306 +++++++++- ggmlR-0.7.2/ggmlR/inst/doc/embedding-ggmlR.R |only ggmlR-0.7.2/ggmlR/inst/doc/embedding-ggmlR.Rmd |only ggmlR-0.7.2/ggmlR/inst/doc/embedding-ggmlR.html | 3 ggmlR-0.7.2/ggmlR/inst/doc/gpu-vulkan.R |only ggmlR-0.7.2/ggmlR/inst/doc/gpu-vulkan.Rmd |only ggmlR-0.7.2/ggmlR/inst/doc/gpu-vulkan.html | 156 ggmlR-0.7.2/ggmlR/inst/doc/keras-like-api.R |only ggmlR-0.7.2/ggmlR/inst/doc/keras-like-api.Rmd |only ggmlR-0.7.2/ggmlR/inst/doc/keras-like-api.html | 537 +- ggmlR-0.7.2/ggmlR/inst/doc/mlr3-integration.R |only ggmlR-0.7.2/ggmlR/inst/doc/mlr3-integration.Rmd |only ggmlR-0.7.2/ggmlR/inst/doc/mlr3-integration.html |only ggmlR-0.7.2/ggmlR/inst/doc/onnx-import.R |only ggmlR-0.7.2/ggmlR/inst/doc/onnx-import.Rmd |only ggmlR-0.7.2/ggmlR/inst/doc/onnx-import.html | 88 ggmlR-0.7.2/ggmlR/inst/doc/quantization.R |only ggmlR-0.7.2/ggmlR/inst/doc/quantization.Rmd |only ggmlR-0.7.2/ggmlR/inst/doc/quantization.html | 117 ggmlR-0.7.2/ggmlR/inst/doc/tidymodels-integration.R |only ggmlR-0.7.2/ggmlR/inst/doc/tidymodels-integration.Rmd |only ggmlR-0.7.2/ggmlR/inst/doc/tidymodels-integration.html |only ggmlR-0.7.2/ggmlR/inst/examples/bench_conv2d_cm1.R |only ggmlR-0.7.2/ggmlR/inst/examples/mlr3_integration.R |only ggmlR-0.7.2/ggmlR/inst/examples/tidymodels_integration.R |only ggmlR-0.7.2/ggmlR/inst/examples/vulkan_caps.R |only ggmlR-0.7.2/ggmlR/inst/include/ggml-vulkan.h | 1 ggmlR-0.7.2/ggmlR/inst/include/ggml.h | 2 ggmlR-0.7.2/ggmlR/man/LearnerClassifGGML.Rd |only ggmlR-0.7.2/ggmlR/man/LearnerRegrGGML.Rd |only ggmlR-0.7.2/ggmlR/man/compile.Rd | 9 ggmlR-0.7.2/ggmlR/man/evaluate.Rd | 19 ggmlR-0.7.2/ggmlR/man/fit.Rd | 9 ggmlR-0.7.2/ggmlR/man/ggmlR-package.Rd | 2 ggmlR-0.7.2/ggmlR/man/ggml_default_mlp.Rd |only ggmlR-0.7.2/ggmlR/man/ggml_marshal_model.Rd |only ggmlR-0.7.2/ggmlR/man/ggml_unmarshal_model.Rd |only ggmlR-0.7.2/ggmlR/man/ggml_vulkan_device_caps.Rd |only ggmlR-0.7.2/ggmlR/man/ggmlr_parsnip_fit_classif.Rd |only ggmlR-0.7.2/ggmlR/man/ggmlr_parsnip_fit_regr.Rd |only ggmlR-0.7.2/ggmlR/man/reexports.Rd |only ggmlR-0.7.2/ggmlR/src/ggml-vulkan.h | 1 ggmlR-0.7.2/ggmlR/src/ggml-vulkan/ggml-vulkan.cpp | 165 ggmlR-0.7.2/ggmlR/src/ggml-vulkan/vulkan-shaders/conv2d_mm.comp | 132 ggmlR-0.7.2/ggmlR/src/ggml-vulkan/vulkan-shaders/flash_attn_base.glsl | 76 ggmlR-0.7.2/ggmlR/src/ggml-vulkan/vulkan-shaders/vulkan-shaders-gen.cpp | 14 ggmlR-0.7.2/ggmlR/src/ggml.h | 2 ggmlR-0.7.2/ggmlR/src/r_interface.c | 2 ggmlR-0.7.2/ggmlR/src/r_interface_graph.c | 4 ggmlR-0.7.2/ggmlR/src/r_interface_vulkan.c | 44 ggmlR-0.7.2/ggmlR/tests/testthat.R | 3 ggmlR-0.7.2/ggmlR/tests/testthat/test-flash-attn-q4k.R |only ggmlR-0.7.2/ggmlR/tests/testthat/test-mlr3-learner.R |only ggmlR-0.7.2/ggmlR/tests/testthat/test-parsnip.R |only ggmlR-0.7.2/ggmlR/tests/testthat/test-vulkan-caps.R |only ggmlR-0.7.2/ggmlR/vignettes/autograd-engine.Rmd |only ggmlR-0.7.2/ggmlR/vignettes/data-parallel-training.Rmd |only ggmlR-0.7.2/ggmlR/vignettes/embedding-ggmlR.Rmd |only ggmlR-0.7.2/ggmlR/vignettes/gpu-vulkan.Rmd |only ggmlR-0.7.2/ggmlR/vignettes/keras-like-api.Rmd |only ggmlR-0.7.2/ggmlR/vignettes/mlr3-integration.Rmd |only ggmlR-0.7.2/ggmlR/vignettes/onnx-import.Rmd |only ggmlR-0.7.2/ggmlR/vignettes/quantization.Rmd |only ggmlR-0.7.2/ggmlR/vignettes/tidymodels-integration.Rmd |only 103 files changed, 3738 insertions(+), 768 deletions(-)
Title: Forecast Reconciliation
Description: Classical (bottom-up and top-down), optimal combination and heuristic
point (Di Fonzo and Girolimetto, 2023 <doi:10.1016/j.ijforecast.2021.08.004>) and
probabilistic (Girolimetto et al. 2024 <doi:10.1016/j.ijforecast.2023.10.003>)
forecast reconciliation procedures for linearly constrained time series
(e.g., hierarchical or grouped time series) in cross-sectional, temporal,
or cross-temporal frameworks.
Author: Daniele Girolimetto [aut, cre] ,
Tommaso Di Fonzo [aut] ,
Yangzhuoran Fin Yang [ctb]
Maintainer: Daniele Girolimetto <daniele.girolimetto@unipd.it>
Diff between FoReco versions 1.2.0 dated 2026-03-12 and 1.2.1 dated 2026-04-15
DESCRIPTION | 6 - MD5 | 16 +-- NEWS.md | 4 R/boot.R | 271 ++++++++++++++++++++++++++++++++++++++++++++++------------ README.md | 2 inst/CITATION | 4 man/csboot.Rd | 35 ++++--- man/ctboot.Rd | 38 +++++--- man/teboot.Rd | 29 ++++-- 9 files changed, 297 insertions(+), 108 deletions(-)
Title: CRAN Task Views
Description: Infrastructure for task views to CRAN-style repositories: Querying task views and installing the associated
packages (client-side tools), generating HTML pages and storing task view information in the repository
(server-side tools).
Author: Achim Zeileis [aut, cre] ,
Kurt Hornik [aut]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between ctv versions 0.9-7 dated 2025-07-27 and 0.9-8 dated 2026-04-15
DESCRIPTION | 8 ++-- MD5 | 16 ++++---- NEWS.md | 11 +++++ R/ctv-server.R | 90 ++++++++++++++++++++++++------------------------ build/vignette.rds |binary inst/CITATION | 17 ++++----- inst/doc/ctv-howto.Rmd | 3 + inst/doc/ctv-howto.html | 11 ++--- vignettes/ctv-howto.Rmd | 3 + 9 files changed, 86 insertions(+), 73 deletions(-)
Title: Interactive Command-Line Menus
Description: Provides interactive command-line menu functionality with
single and multiple selection menus, keyboard navigation (arrow keys or
vi-style j/k), preselection, and graceful fallback for non-interactive
environments. Inspired by tools such as 'inquirer.js'
<https://github.com/SBoudrias/Inquirer.js>, 'pick'
<https://github.com/aisk/pick>, and 'survey'
<https://github.com/AlecAivazis/survey>. Designed to be lightweight and
easy to integrate into 'R' packages and scripts.
Author: Petr Čala [aut, cre]
Maintainer: Petr Čala <61505008@fsv.cuni.cz>
Diff between climenu versions 0.1.5 dated 2026-02-18 and 0.1.7 dated 2026-04-15
climenu-0.1.5/climenu/R/zzz.R |only climenu-0.1.7/climenu/DESCRIPTION | 12 climenu-0.1.7/climenu/MD5 | 22 - climenu-0.1.7/climenu/NAMESPACE | 1 climenu-0.1.7/climenu/R/checkbox.R | 91 +++++ climenu-0.1.7/climenu/R/select.R | 55 +++ climenu-0.1.7/climenu/R/utils.R | 113 +++---- climenu-0.1.7/climenu/build/vignette.rds |binary climenu-0.1.7/climenu/inst/doc/climenu.R | 9 climenu-0.1.7/climenu/inst/doc/climenu.Rmd | 38 -- climenu-0.1.7/climenu/inst/doc/climenu.html | 302 ++++++++----------- climenu-0.1.7/climenu/tests/testthat/test-fallback.R |only climenu-0.1.7/climenu/vignettes/climenu.Rmd | 38 -- 13 files changed, 362 insertions(+), 319 deletions(-)
Title: Hierarchical Probit Estimation for Dichotomized Data
Description: Provides likelihood-based and hierarchical estimation methods
for thresholded (binomial-probit) data. Supports fixed-mean and random-mean
models with maximum likelihood estimation (MLE), generalized linear mixed model
(GLMM), and Bayesian Markov chain Monte Carlo (MCMC) implementations.
For methodological background, see Albert and Chib (1993)
<doi:10.1080/01621459.1993.10476321> and McCulloch (1994)
<doi:10.2307/2297959>.
Author: Zhaoze Liu [aut],
Longwen Shang [aut],
Mary Lesperance [aut],
Shuqing Zhou [aut],
Xuekui Zhang [aut, cre, fnd]
Maintainer: Xuekui Zhang <xuekui@uvic.ca>
Diff between bin2norm versions 0.1.0 dated 2025-11-17 and 0.1.1 dated 2026-04-15
DESCRIPTION | 22 ++++++++++++++++------ MD5 | 2 +- 2 files changed, 17 insertions(+), 7 deletions(-)
Title: Mapping Hidden Geometry into Future Sequences
Description: A variational mapping approach that reveals and expands future temporal dynamics from folded high-dimensional geometric distance spaces, unfold turns a set of time series into a 4D block of pairwise distances between reframed windows, learns a variational mapper that maps those distances to the next reframed window, and produces horizon-wise predictive functions for each input series. In short: it unfolds the future path of each series from a folded geometric distance representation.
Author: Giancarlo Vercellino [aut, cre, cph]
Maintainer: Giancarlo Vercellino <giancarlo.vercellino@gmail.com>
Diff between unfold versions 1.0.0 dated 2025-08-26 and 1.0.1 dated 2026-04-15
DESCRIPTION | 8 +++---- MD5 | 10 ++++----- NEWS.md | 5 +++- R/main.R | 46 +++++++++++++++++-------------------------- man/unfold.Rd | 48 ++++++++++++++++++--------------------------- tests/testthat/test-main.R | 31 +++++++++++++++++------------ 6 files changed, 71 insertions(+), 77 deletions(-)
Title: Test Theory Analysis and Biclustering
Description: Implements comprehensive test data engineering methods as described in
Shojima (2022, ISBN:978-9811699856). Provides statistical techniques for
engineering and processing test data: Classical Test Theory (CTT) with
reliability coefficients for continuous ability assessment; Item Response
Theory (IRT) including Rasch, 2PL, and 3PL models with item/test information
functions; Latent Class Analysis (LCA) for nominal clustering; Latent Rank
Analysis (LRA) for ordinal clustering with automatic determination of cluster
numbers; Biclustering methods including infinite relational models for
simultaneous clustering of examinees and items without predefined cluster
numbers; and Bayesian Network Models (BNM) for visualizing inter-item
dependencies. Features local dependence analysis through LRA and biclustering,
parameter estimation, dimensionality assessment, and network structure
visualization for educational, psychological, and social science research.
Author: Koji Kosugi [aut, cre]
Maintainer: Koji Kosugi <kosugitti@gmail.com>
Diff between exametrika versions 1.10.1 dated 2026-03-19 and 1.11.0 dated 2026-04-15
DESCRIPTION | 6 - MD5 | 80 ++++++++-------- NAMESPACE | 8 + NEWS.md | 47 +++++++++ R/00_BiclucterUtils.R | 22 ++++ R/00_dataset_explain.R | 13 ++ R/00_exametrikaPlot.R | 8 + R/00_exametrikaPrint.R | 84 ++++++++++++++++ R/00_plot_biclustering.R | 7 + R/00_plot_lca_lra.R | 5 - R/01_dataFormat.R | 6 + R/07_Biclustering.R | 3 R/07_IRM.R | 53 +++++----- R/15_Biclustering_nominal.R | 66 +++++-------- R/16_Biclustering_ordinal.R | 3 R/17_Biclustering_nominal_IRM.R | 60 ++++-------- R/18_Biclustering_ordinal_IRM.R | 1 R/19_Biclustering_rated.R |only R/20_Biclustering_rated_IRM.R |only R/21_DistractorAnalysis.R |only README.md | 2 data/J21S300.rda |only inst/doc/biclustering.R | 30 ++++++ inst/doc/biclustering.Rmd | 50 ++++++++++ inst/doc/biclustering.html | 127 +++++++++++++++++-------- inst/doc/getting-started.Rmd | 2 inst/doc/getting-started.html | 2 inst/doc/guide-ja.Rmd | 2 inst/doc/guide-ja.html | 2 inst/doc/irt.html | 36 +++---- inst/doc/latent-class-rank.html | 16 +-- inst/doc/network-models.html | 6 - man/Biclustering.Rd | 22 ++++ man/Biclustering_IRM.Rd | 56 ++++++++++- man/DistractorAnalysis.Rd |only man/J15S3810.Rd | 4 man/J21S300.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/test-distractor.R |only tests/testthat/test-irm-nominal.R | 11 +- tests/testthat/test-irm-rated.R |only tests/testthat/test-polytomous-biclustering.R | 130 +++++++++++++++++++++++++- vignettes/biclustering.Rmd | 50 ++++++++++ vignettes/getting-started.Rmd | 2 vignettes/guide-ja.Rmd | 2 45 files changed, 778 insertions(+), 246 deletions(-)
Title: 1970s BASIC Interpreter
Description: Executes BASIC programs from the 1970s, for historical and
educational purposes. This enables famous examples of early machine
learning, artificial intelligence, natural language processing, cellular
automata, and so on, to be run in their original form.
Author: Mike Lee [aut, cre]
Maintainer: Mike Lee <random.deviate@gmail.com>
Diff between brassica versions 1.0.2 dated 2022-10-24 and 1.0.3 dated 2026-04-15
DESCRIPTION | 12 +++++++----- MD5 | 14 +++++++------- NEWS | 7 ++++++- build/vignette.rds |binary inst/BASIC/notone.bas | 4 ++-- inst/doc/BASIC.Rnw | 6 +++--- inst/doc/BASIC.pdf |binary vignettes/BASIC.Rnw | 6 +++--- 8 files changed, 28 insertions(+), 21 deletions(-)
Title: Beta Autoregressive Moving Average Models
Description: Fits Beta Autoregressive Moving Average (BARMA) models for time series data distributed in the standard unit interval (0, 1). The estimation is performed via the conditional maximum likelihood method using the Broyden-Fletcher-Goldfarb-Shanno (BFGS) quasi-Newton algorithm. The package includes tools for model fitting, diagnostic checking, and forecasting. Based on the work of Rocha and Cribari-Neto (2009) <doi:10.1007/s11749-008-0112-z> and the associated erratum Rocha and Cribari-Neto (2017) <doi:10.1007/s11749-017-0528-4>. The original code was developed by Fabio M. Bayer.
Author: Everton da Costa [aut, cre] ,
Francisco Cribari-Neto [ctb, ths] ,
Vinicius Scher [ctb]
Maintainer: Everton da Costa <everto.cost@gmail.com>
Diff between betaARMA versions 1.0.1 dated 2026-03-29 and 1.1.0 dated 2026-04-15
betaARMA-1.0.1/betaARMA/man/dot-_get_phi_start.Rd |only betaARMA-1.1.0/betaARMA/DESCRIPTION | 7 betaARMA-1.1.0/betaARMA/MD5 | 34 - betaARMA-1.1.0/betaARMA/NAMESPACE | 1 betaARMA-1.1.0/betaARMA/NEWS.md | 35 + betaARMA-1.1.0/betaARMA/R/barma.R | 168 +++++--- betaARMA-1.1.0/betaARMA/R/fim_barma.R | 254 ++++++------- betaARMA-1.1.0/betaARMA/R/loglik_barma.R | 162 ++++---- betaARMA-1.1.0/betaARMA/R/make_link_structure.R | 106 ++--- betaARMA-1.1.0/betaARMA/R/score_vector_barma.R | 264 +++++++------ betaARMA-1.1.0/betaARMA/R/start_values.R | 398 ++++++++------------- betaARMA-1.1.0/betaARMA/README.md | 93 +++- betaARMA-1.1.0/betaARMA/man/barma.Rd | 108 +++-- betaARMA-1.1.0/betaARMA/man/dot-get_phi_start.Rd |only betaARMA-1.1.0/betaARMA/man/fim_barma.Rd | 131 ++++-- betaARMA-1.1.0/betaARMA/man/loglik_barma.Rd | 97 +++-- betaARMA-1.1.0/betaARMA/man/make_link_structure.Rd | 53 +- betaARMA-1.1.0/betaARMA/man/score_vector_barma.Rd | 101 ++++- betaARMA-1.1.0/betaARMA/man/start_values.Rd | 46 -- 19 files changed, 1122 insertions(+), 936 deletions(-)
Title: Korean National Assembly Data for Political Science Education
Description: Provides ready-to-use datasets from the Korean National Assembly
(assemblies 20 through 22, 2016-2026) for teaching quantitative methods in
political science. Includes legislator metadata, bill proposals, roll call
votes, asset declarations, and policy seminar records. Designed as a Korean
politics counterpart to packages like 'palmerpenguins', enabling students to
practice regression, panel data analysis, text analysis, and network analysis
with real legislative data. Roll call vote data and spatial voting models are
described in Poole and Rosenthal (1985) <doi:10.2307/2111172>. Legislative
data is sourced from the Korean National Assembly Open API.
Author: Kyusik Yang [aut, cre]
Maintainer: Kyusik Yang <kyusik.yang@nyu.edu>
Diff between assemblykor versions 0.1.1 dated 2026-04-07 and 0.1.2 dated 2026-04-15
DESCRIPTION | 6 - MD5 | 58 +++++----- NEWS.md | 11 + R/data.R | 10 - R/download.R | 37 ++++-- R/zzz.R | 6 - README.md | 16 +- inst/CITATION | 2 inst/cheatsheet/assemblykor-cheatsheet.Rmd | 10 - inst/doc/codebook.Rmd | 6 - inst/doc/codebook.html | 6 - inst/doc/introduction.Rmd | 4 inst/doc/introduction.html | 4 inst/doc/quickstart.Rmd | 3 inst/doc/quickstart.html | 3 inst/rmd-tutorials/07-roll-call-analysis.Rmd | 4 inst/shinyapps/07-roll-call-analysis/07-roll-call-analysis.Rmd | 4 inst/shinyapps/assemblykor-tutorials/assemblykor-tutorials.Rmd | 4 inst/tutorials/07-roll-call-analysis/07-roll-call-analysis.Rmd | 4 man/assemblykor-package.Rd | 4 man/figures |only man/get_bill_texts.Rd | 10 + man/get_proposers.Rd | 21 ++- man/roll_calls.Rd | 4 man/votes.Rd | 2 vignettes/codebook.Rmd | 6 - vignettes/introduction.Rmd | 4 vignettes/quickstart.Rmd | 3 28 files changed, 147 insertions(+), 105 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-03-31 0.3.7
2024-12-17 0.3.6
2024-06-02 0.3.5
2024-03-12 0.3.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-10 1.0.1
2026-03-31 1.0