Title: Vector in Partition
Description: Non-parametric clustering of joint pattern multi-genetic/epigenetic factors. This package contains functions designed to cluster subjects based on gene features including single nucleotide polymorphisms (SNPs), DNA methylation (CPG), gene expression (GE), and covariate data. The novel concept follows the general K-means (Hartigan and Wong (1979) <doi:10.2307/2346830> framework but uses weighted Euclidean distances across the gene features to cluster subjects. This approach is unique in that it attempts to capture all pairwise interactions in an effort to cluster based on their complex biological interactions.
Author: Joseph Handwerker [aut, ctb, cre],
Allison Plaxco [aut, ctb],
Luke Pirrotta [ctb],
Lauren Sobral [ctb],
Meredith Ray [aut, ctb]
Maintainer: Joseph Handwerker <jkhndwrk@memphis.edu>
Diff between RHclust versions 2.0.0 dated 2023-08-15 and 3.0.0 dated 2026-04-17
DESCRIPTION | 17 MD5 | 39 - NAMESPACE | 4 R/BinaryClass.R | 303 ++++------- R/IndexGrouped.R |only R/SimData.R | 538 ++++++++++---------- R/SimulatedGrouped.R |only R/VIP.R | 233 +++++++- R/VIPcov.R | 1270 ++++++++++++++++++++++++++++-------------------- R/VIPlong.R |only R/VIPnoCPG.R | 210 ++++++- R/VIPnoSNP.R | 205 ++++++- R/gower.R |only R/vipx.R |only R/zzz.R |only man/BinaryClass.Rd | 20 man/IndexGrouped.Rd |only man/SimData.Rd | 6 man/SimulatedGrouped.Rd |only man/VIP.Rd | 18 man/VIPcov.Rd | 38 - man/VIPlong.Rd |only man/VIPnoCPG.Rd | 12 man/VIPnoSNP.Rd | 12 man/gower.Rd |only man/vipx.Rd |only 26 files changed, 1819 insertions(+), 1106 deletions(-)
Title: Faster Raster and Spatial Vector Processing Using 'GRASS'
Description: Processing of large-in-memory/large-on disk rasters and spatial
vectors using 'GRASS' <https://grass.osgeo.org/>. Most functions in the
'terra' package are recreated. Processing of medium-sized and smaller
spatial objects will nearly always be faster using 'terra' or 'sf', but
for large-in-memory/large-on-disk objects, 'fasterRaster' may be faster.
To use most of the functions, you must have the stand-alone version (not
the 'OSGeoW4' installer version) of 'GRASS' 8.0 or higher.
Author: Adam B. Smith [cre, aut]
Maintainer: Adam B. Smith <adam.smith@mobot.org>
Diff between fasterRaster versions 8.4.1.1 dated 2025-11-18 and 8.4.1.2 dated 2026-04-17
fasterRaster-8.4.1.1/fasterRaster/R/rNormRast.r |only fasterRaster-8.4.1.1/fasterRaster/R/rUnifRast.r |only fasterRaster-8.4.1.1/fasterRaster/man/dot-makeGRaster.Rd |only fasterRaster-8.4.1.1/fasterRaster/man/dot-makeGVector.Rd |only fasterRaster-8.4.1.2/fasterRaster/DESCRIPTION | 8 fasterRaster-8.4.1.2/fasterRaster/MD5 | 276 +-- fasterRaster-8.4.1.2/fasterRaster/NAMESPACE | 2 fasterRaster-8.4.1.2/fasterRaster/NEWS.md | 14 fasterRaster-8.4.1.2/fasterRaster/R/00d_GRaster_class.r | 16 fasterRaster-8.4.1.2/fasterRaster/R/00e_GVector_class.r | 14 fasterRaster-8.4.1.2/fasterRaster/R/04_arithmetic.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/05_GRaster_functions_by_layer.r | 16 fasterRaster-8.4.1.2/fasterRaster/R/06_GRaster_functions_across_layers.r | 12 fasterRaster-8.4.1.2/fasterRaster/R/07_comparison.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/aggregate.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/app.r | 72 fasterRaster-8.4.1.2/fasterRaster/R/as.contour.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/as.int.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/as.lines.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/as.points.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/as.polygons.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/bioclims_GRaster.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/bioclims_SpatRaster.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/buffer.r | 6 fasterRaster-8.4.1.2/fasterRaster/R/cellSize.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/centroids.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/classify.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/cleanGeom.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/clump.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/compositeRGB.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/concats.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/connectors.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/convHull.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/copyGSpatial.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/crds.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/crop.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/delaunay.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/denoise_noise.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/disagg.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/distance.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/erase.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/extend.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/extract.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/fast.r | 8 fasterRaster-8.4.1.2/fasterRaster/R/fasterRaster.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/fillHoles.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/fillNAs.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/flow.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/flowPath.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/focal.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/fractalRast.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/fragmentation.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/geomorphons.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/grid.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/hexagons.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/hillshade.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/horizonHeight.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/init.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/interpIDW.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/interpSplines.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/intersect.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/kernel.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/longlat.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/mask.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/maskNA.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/match.r | 6 fasterRaster-8.4.1.2/fasterRaster/R/merge.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/multivarEnvSim.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/plot.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/predict.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/princomp.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/project.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/rSpatialDepRast.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/rWalkRast.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/rasterize.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/rbind.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/reorient.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/replace_single_square_bracket.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/resample.r | 14 fasterRaster-8.4.1.2/fasterRaster/R/rnormRast.r |only fasterRaster-8.4.1.2/fasterRaster/R/ruggedness.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/runifRast.r |only fasterRaster-8.4.1.2/fasterRaster/R/sampleRast.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/scale.r | 8 fasterRaster-8.4.1.2/fasterRaster/R/segregate.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/selectRange.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/simplifyGeom.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/sineRast.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/smoothGeom.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/spatSample.r | 8 fasterRaster-8.4.1.2/fasterRaster/R/streams.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/stretch.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/subset_single_bracket.r | 10 fasterRaster-8.4.1.2/fasterRaster/R/subst.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/sun.r | 10 fasterRaster-8.4.1.2/fasterRaster/R/terrain.r | 18 fasterRaster-8.4.1.2/fasterRaster/R/thinLines.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/thinPoints.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/tiles.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/trim.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/union.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/update.r | 4 fasterRaster-8.4.1.2/fasterRaster/R/vegIndex.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/voronoi.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/wetness.r | 2 fasterRaster-8.4.1.2/fasterRaster/R/xor.r | 2 fasterRaster-8.4.1.2/fasterRaster/README.md | 7 fasterRaster-8.4.1.2/fasterRaster/build/partial.rdb |binary fasterRaster-8.4.1.2/fasterRaster/build/vignette.rds |binary fasterRaster-8.4.1.2/fasterRaster/inst/CITATION | 21 fasterRaster-8.4.1.2/fasterRaster/inst/doc/GRasters.html | 4 fasterRaster-8.4.1.2/fasterRaster/inst/doc/fasterRaster.html | 76 fasterRaster-8.4.1.2/fasterRaster/inst/doc/faster_fasterRaster.html | 4 fasterRaster-8.4.1.2/fasterRaster/inst/doc/hidden_functions.Rmd | 3 fasterRaster-8.4.1.2/fasterRaster/inst/doc/hidden_functions.html | 10 fasterRaster-8.4.1.2/fasterRaster/inst/doc/projects_mapsets.html | 4 fasterRaster-8.4.1.2/fasterRaster/inst/doc/regions.html | 4 fasterRaster-8.4.1.2/fasterRaster/inst/doc/three_d_objects.html | 4 fasterRaster-8.4.1.2/fasterRaster/inst/pkgdown.yml | 2 fasterRaster-8.4.1.2/fasterRaster/man/GLocation.Rd | 158 - fasterRaster-8.4.1.2/fasterRaster/man/app.Rd | 261 +-- fasterRaster-8.4.1.2/fasterRaster/man/copyGSpatial.Rd | 78 fasterRaster-8.4.1.2/fasterRaster/man/dot-g.proj.Rd | 30 fasterRaster-8.4.1.2/fasterRaster/man/dot-g.region.Rd | 30 fasterRaster-8.4.1.2/fasterRaster/man/dot-rename.Rd | 40 fasterRaster-8.4.1.2/fasterRaster/man/exists.Rd | 50 fasterRaster-8.4.1.2/fasterRaster/man/fasterRaster.Rd | 824 +++++----- fasterRaster-8.4.1.2/fasterRaster/man/location.Rd | 84 - fasterRaster-8.4.1.2/fasterRaster/man/locationCreate.Rd | 78 fasterRaster-8.4.1.2/fasterRaster/man/locationFind.Rd | 96 - fasterRaster-8.4.1.2/fasterRaster/man/locationRestore.Rd | 70 fasterRaster-8.4.1.2/fasterRaster/man/locations.Rd | 40 fasterRaster-8.4.1.2/fasterRaster/man/ls.Rd | 42 fasterRaster-8.4.1.2/fasterRaster/man/makeGRaster.Rd |only fasterRaster-8.4.1.2/fasterRaster/man/makeGVector.Rd |only fasterRaster-8.4.1.2/fasterRaster/man/mapset.Rd | 58 fasterRaster-8.4.1.2/fasterRaster/man/mow.Rd | 126 - fasterRaster-8.4.1.2/fasterRaster/man/rNormRast.Rd | 2 fasterRaster-8.4.1.2/fasterRaster/man/rUnifRast.Rd | 2 fasterRaster-8.4.1.2/fasterRaster/man/region.Rd | 200 +- fasterRaster-8.4.1.2/fasterRaster/man/rm.Rd | 72 fasterRaster-8.4.1.2/fasterRaster/man/trim.Rd | 126 - fasterRaster-8.4.1.2/fasterRaster/vignettes/hidden_functions.Rmd | 3 143 files changed, 1683 insertions(+), 1640 deletions(-)
Title: 'HTML' Element Construction
Description: Provides a deterministic, framework-agnostic Domain-Specific Language for building
'HTML' nodes and rendering them to a string.
Author: Kennedy Mwavu [aut, cre] ,
Sigflux [cph, fnd]
Maintainer: Kennedy Mwavu <mwavukennedy@gmail.com>
Diff between hypertext versions 1.1.0 dated 2026-03-07 and 1.2.0 dated 2026-04-17
hypertext-1.1.0/hypertext/man/dot-escape_html.Rd |only hypertext-1.1.0/hypertext/man/dot-flatten_children.Rd |only hypertext-1.1.0/hypertext/man/dot-make_tag.Rd |only hypertext-1.1.0/hypertext/man/dot-make_void_tag.Rd |only hypertext-1.1.0/hypertext/man/dot-render_attrs.Rd |only hypertext-1.2.0/hypertext/DESCRIPTION | 6 hypertext-1.2.0/hypertext/MD5 | 19 - hypertext-1.2.0/hypertext/R/tags.R | 175 +++++++--- hypertext-1.2.0/hypertext/tests/testthat/test-flatten_children.R | 15 hypertext-1.2.0/hypertext/tests/testthat/test-list2.R |only hypertext-1.2.0/hypertext/tests/testthat/test-tag.R | 17 hypertext-1.2.0/hypertext/tests/testthat/test-tag_factories.R | 26 - hypertext-1.2.0/hypertext/tests/testthat/test-tag_list.R | 14 hypertext-1.2.0/hypertext/tests/testthat/test-trailing_commas.R |only 14 files changed, 192 insertions(+), 80 deletions(-)
Title: Inferential Methods for Multimodal and Other Networks
Description: A set of tools for testing networks.
It includes functions for univariate and multivariate
conditional uniform graph and quadratic assignment procedure testing,
and network regression.
The package is a complement to
'Multimodal Political Networks' (2021, ISBN:9781108985000),
and includes various datasets used in the book.
Built on the 'manynet' package, all functions operate with matrices,
edge lists, and 'igraph', 'network', and 'tidygraph' objects,
and on one-mode and two-mode (bipartite) networks.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Jael Tan [ctb] ,
Bernhard Bieri [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between migraph versions 1.6.0 dated 2026-04-04 and 1.6.2 dated 2026-04-17
migraph-1.6.0/migraph/R/tutorial_test.R |only migraph-1.6.0/migraph/man/test_tutorials.Rd |only migraph-1.6.2/migraph/DESCRIPTION | 8 migraph-1.6.2/migraph/MD5 | 47 + migraph-1.6.2/migraph/NAMESPACE | 1 migraph-1.6.2/migraph/NEWS.md | 38 + migraph-1.6.2/migraph/R/model_distrib.R | 10 migraph-1.6.2/migraph/R/tutorial_run.R | 19 migraph-1.6.2/migraph/inst/migraph.png |only migraph-1.6.2/migraph/inst/tutorials/tutorial0/tutorial0.Rmd | 4 migraph-1.6.2/migraph/inst/tutorials/tutorial0/tutorial0.html | 68 +- migraph-1.6.2/migraph/inst/tutorials/tutorial7/diffusion.Rmd | 68 +- migraph-1.6.2/migraph/inst/tutorials/tutorial7/diffusion.html | 216 ++++---- migraph-1.6.2/migraph/inst/tutorials/tutorial8/diversity.Rmd | 61 +- migraph-1.6.2/migraph/inst/tutorials/tutorial8/diversity.html | 248 +++++----- migraph-1.6.2/migraph/inst/tutorials/tutorial9/ergm.Rmd | 2 migraph-1.6.2/migraph/inst/tutorials/tutorial9/ergm.html | 207 ++++---- migraph-1.6.2/migraph/inst/tutorials/tutorial9/ergm_files/figure-html/visflo2-1.png |binary migraph-1.6.2/migraph/man/figures/logo.png |binary migraph-1.6.2/migraph/tests/testthat/Rplots.pdf |only migraph-1.6.2/migraph/tests/testthat/helper-functions.R | 104 ++++ migraph-1.6.2/migraph/tests/testthat/test-model_distrib.R | 7 migraph-1.6.2/migraph/tests/testthat/test-model_predict.R |only migraph-1.6.2/migraph/tests/testthat/test-tutorials_autograph.R | 17 migraph-1.6.2/migraph/tests/testthat/test-tutorials_manynet.R | 16 migraph-1.6.2/migraph/tests/testthat/test-tutorials_migraph.R | 20 migraph-1.6.2/migraph/tests/testthat/test-tutorials_netrics.R |only migraph-1.6.2/migraph/tests/testthat/test-tutorials_run.R |only 28 files changed, 674 insertions(+), 487 deletions(-)
Title: Acceder Con R a Los Datos Del Portal De Hacienda
Description: Obtener listado de datos, acceder y extender series del Portal de
Datos de Hacienda.Las proyecciones se realizan con 'forecast',
Hyndman RJ, Khandakar Y (2008) <doi:10.18637/jss.v027.i03>.
Search, download and forecast time-series from the Ministry of Economy
of Argentina. Forecasts are built with the 'forecast' package,
Hyndman RJ, Khandakar Y (2008) <doi:10.18637/jss.v027.i03>.
Author: Fernando Garcia Diaz [aut, cre]
Maintainer: Fernando Garcia Diaz <fmgarciadiaz78@gmail.com>
Diff between PortalHacienda versions 0.1.7 dated 2023-05-31 and 0.1.8 dated 2026-04-17
PortalHacienda-0.1.7/PortalHacienda/man/PortalHacienda.Rd |only PortalHacienda-0.1.8/PortalHacienda/DESCRIPTION | 9 - PortalHacienda-0.1.8/PortalHacienda/MD5 | 12 - PortalHacienda-0.1.8/PortalHacienda/R/FuncionesAcceso.R | 9 - PortalHacienda-0.1.8/PortalHacienda/build/vignette.rds |binary PortalHacienda-0.1.8/PortalHacienda/inst/doc/Tutorial.R | 2 PortalHacienda-0.1.8/PortalHacienda/inst/doc/Tutorial.html | 76 ++++------ PortalHacienda-0.1.8/PortalHacienda/man/PortalHacienda-package.Rd |only 8 files changed, 52 insertions(+), 56 deletions(-)
More information about PortalHacienda at CRAN
Permanent link
Title: Heterogeneous Methods for Shape and Other Multidimensional Data
Description: Tools for geometric morphometric analyses and multidimensional
data. Implements methods for morphological disparity analysis using
bootstrap and rarefaction,
as reviewed in Foote (1997) <doi:10.1146/annurev.ecolsys.28.1.129>.
Includes integration and modularity testing,
following Fruciano et al. (2013) <doi:10.1371/journal.pone.0069376>,
using Escoufier's RV coefficient as test statistic as well as
two-block partial least squares -
PLS, Rohlf and Corti (2000) <doi:10.1080/106351500750049806>.
Also includes vector angle comparisons,
orthogonal projection for data correction
(Burnaby (1966) <doi:10.2307/2528217>; Fruciano (2016) <doi:10.1007/s00427-016-0537-4>),
and parallel analysis for dimensionality reduction (Buja and Eyuboglu (1992)
<doi:10.1207/s15327906mbr2704_2>).
Author: Carmelo Fruciano [aut, cre]
Maintainer: Carmelo Fruciano <carmelo.fruciano@unict.it>
Diff between GeometricMorphometricsMix versions 0.6.0.1 dated 2026-01-27 and 0.6.1.1 dated 2026-04-17
GeometricMorphometricsMix-0.6.0.1/GeometricMorphometricsMix/tests/testthat/test-kmultparallel.R |only GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/DESCRIPTION | 10 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/MD5 | 32 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/NAMESPACE | 2 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/NEWS.md | 11 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/R/Kmultparallel.R | 842 +--------- GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/R/PLS_fit.R | 46 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/R/deprecated_defunct.R | 23 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/README.md | 8 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/inst/doc/disparity_analysis.html | 4 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/inst/doc/pls_analysis_use_case.html | 56 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/man/GeometricMorphometricsMix-defunct.Rd | 14 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/man/GeometricMorphometricsMix-deprecated.Rd |only GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/man/Kmultparallel.Rd | 219 -- GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/man/plot.parallel_Kmult.Rd | 41 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/man/pls.Rd | 4 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/man/print.parallel_Kmult.Rd | 29 GeometricMorphometricsMix-0.6.1.1/GeometricMorphometricsMix/man/summary.parallel_Kmult.Rd | 28 18 files changed, 258 insertions(+), 1111 deletions(-)
More information about GeometricMorphometricsMix at CRAN
Permanent link
Title: R Interface to Get French Heritage Data
Description: Get spatial vector data from the Atlas du Patrimoine
(<http://atlas.patrimoines.culture.fr/atlas/trunk/>),
the official national platform of the French Ministry of Culture,
and facilitate its use within R geospatial workflows.
The package provides functions to list available heritage datasets,
query and retrieve heritage data using spatial queries based
on user-provided sf objects, perform spatial filtering operations,
and return results as sf objects suitable for spatial analysis, mapping,
and integration into heritage management and landscape studies.
Author: Matthieu Chevereau [aut, cre]
Maintainer: Matthieu Chevereau <matthieu.chevereau@hotmail.fr>
Diff between frheritage versions 0.1.0 dated 2026-01-24 and 0.1.1 dated 2026-04-17
frheritage-0.1.0/frheritage/man/geo_dep.Rd |only frheritage-0.1.0/frheritage/man/geo_shapefiles_read.Rd |only frheritage-0.1.0/frheritage/man/geo_spatial_check.Rd |only frheritage-0.1.0/frheritage/man/geo_spatial_filter.Rd |only frheritage-0.1.0/frheritage/man/geo_too_large.Rd |only frheritage-0.1.0/frheritage/tests/testthat/test-geo_dep.R |only frheritage-0.1.0/frheritage/tests/testthat/test-geo_shapefiles_read.R |only frheritage-0.1.0/frheritage/tests/testthat/test-geo_spatial_check.R |only frheritage-0.1.0/frheritage/tests/testthat/test-geo_spatial_filter.R |only frheritage-0.1.0/frheritage/tests/testthat/test-geo_too_large.R |only frheritage-0.1.1/frheritage/DESCRIPTION | 6 frheritage-0.1.1/frheritage/MD5 | 48 - frheritage-0.1.1/frheritage/NAMESPACE | 10 frheritage-0.1.1/frheritage/NEWS.md |only frheritage-0.1.1/frheritage/R/data.R | 3 frheritage-0.1.1/frheritage/R/geo.R | 295 ++------ frheritage-0.1.1/frheritage/R/get_deps.R |only frheritage-0.1.1/frheritage/R/get_heritage.R | 347 +++++++--- frheritage-0.1.1/frheritage/R/get_heritage_ids.R | 232 +++++- frheritage-0.1.1/frheritage/R/ids.R | 50 + frheritage-0.1.1/frheritage/R/utils.R | 47 + frheritage-0.1.1/frheritage/man/atlas_ok.Rd |only frheritage-0.1.1/frheritage/man/geo_extent.Rd | 14 frheritage-0.1.1/frheritage/man/geo_shapefile_read.Rd |only frheritage-0.1.1/frheritage/man/get_deps.Rd |only frheritage-0.1.1/frheritage/man/get_heritage.Rd | 60 - frheritage-0.1.1/frheritage/man/get_heritage_ids.Rd | 10 frheritage-0.1.1/frheritage/tests/testthat/test-atlas_ok.R |only frheritage-0.1.1/frheritage/tests/testthat/test-data_filter.R | 9 frheritage-0.1.1/frheritage/tests/testthat/test-geo_extent.R | 33 frheritage-0.1.1/frheritage/tests/testthat/test-geo_shapefile_read.R |only frheritage-0.1.1/frheritage/tests/testthat/test-get_deps.R |only frheritage-0.1.1/frheritage/tests/testthat/test-get_heritage.R | 174 +++-- frheritage-0.1.1/frheritage/tests/testthat/test-get_heritage_ids.R | 83 +- 34 files changed, 871 insertions(+), 550 deletions(-)
Title: Tidy Tuning Tools
Description: The ability to tune models is important. 'tune' contains
functions and classes to be used in conjunction with other
'tidymodels' packages for finding reasonable values of
hyper-parameters in models, preprocessing methods, and post-processing
steps.
Author: Max Kuhn [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between tune versions 2.0.1 dated 2025-10-17 and 2.1.0 dated 2026-04-17
tune-2.0.1/tune/tests/testthat/_snaps/bayes.md |only tune-2.0.1/tune/tests/testthat/test-GP.R |only tune-2.0.1/tune/tests/testthat/test-bayes.R |only tune-2.1.0/tune/DESCRIPTION | 26 tune-2.1.0/tune/MD5 | 211 ++-- tune-2.1.0/tune/NAMESPACE | 37 tune-2.1.0/tune/NEWS.md | 50 + tune-2.1.0/tune/R/0_imports.R | 12 tune-2.1.0/tune/R/augment.R | 24 tune-2.1.0/tune/R/checks.R | 105 +- tune-2.1.0/tune/R/collect.R | 167 +++ tune-2.1.0/tune/R/control.R | 69 + tune-2.1.0/tune/R/finalize.R | 10 tune-2.1.0/tune/R/gp_helpers.R |only tune-2.1.0/tune/R/grid_helpers.R | 76 - tune-2.1.0/tune/R/grid_performance.R | 52 + tune-2.1.0/tune/R/last_fit.R | 5 tune-2.1.0/tune/R/logging.R | 6 tune-2.1.0/tune/R/loop_over_all_stages-helpers.R | 236 +++-- tune-2.1.0/tune/R/loop_over_all_stages.R | 366 +++++-- tune-2.1.0/tune/R/merge.R | 24 tune-2.1.0/tune/R/metric-selection.R | 9 tune-2.1.0/tune/R/min_grid.R | 4 tune-2.1.0/tune/R/outcome-names.R | 4 tune-2.1.0/tune/R/parallel.R | 26 tune-2.1.0/tune/R/resample.R | 5 tune-2.1.0/tune/R/schedule.R | 72 + tune-2.1.0/tune/R/symbol.R | 55 - tune-2.1.0/tune/R/tune-package.R |only tune-2.1.0/tune/R/tune_bayes.R | 232 +--- tune-2.1.0/tune/R/tune_grid.R | 41 tune-2.1.0/tune/R/tune_grid_loop.R | 14 tune-2.1.0/tune/R/utils.R | 238 +++++ tune-2.1.0/tune/inst/WORDLIST | 10 tune-2.1.0/tune/inst/loop.qmd |only tune-2.1.0/tune/inst/regression_tests/simple_tune_example.R | 6 tune-2.1.0/tune/inst/test_objects.R | 16 tune-2.1.0/tune/man/add_resample_weights.Rd |only tune-2.1.0/tune/man/autoplot.tune_results.Rd | 2 tune-2.1.0/tune/man/calculate_resample_weights.Rd |only tune-2.1.0/tune/man/check_resample_weights.Rd |only tune-2.1.0/tune/man/collect_predictions.Rd | 2 tune-2.1.0/tune/man/compute_metrics.Rd | 2 tune-2.1.0/tune/man/conf_mat_resampled.Rd | 2 tune-2.1.0/tune/man/control_bayes.Rd | 7 tune-2.1.0/tune/man/control_grid.Rd | 10 tune-2.1.0/tune/man/coord_obs_pred.Rd | 2 tune-2.1.0/tune/man/empty_ellipses.Rd | 102 +- tune-2.1.0/tune/man/expo_decay.Rd | 2 tune-2.1.0/tune/man/extract-tune.Rd | 2 tune-2.1.0/tune/man/extract_resample_weights.Rd |only tune-2.1.0/tune/man/figures/lifecycle-deprecated.svg |only tune-2.1.0/tune/man/figures/lifecycle-experimental.svg |only tune-2.1.0/tune/man/figures/lifecycle-stable.svg |only tune-2.1.0/tune/man/figures/lifecycle-superseded.svg |only tune-2.1.0/tune/man/finalize_model.Rd | 2 tune-2.1.0/tune/man/fit_best.Rd | 2 tune-2.1.0/tune/man/fit_resamples.Rd | 6 tune-2.1.0/tune/man/int_pctl.tune_results.Rd | 2 tune-2.1.0/tune/man/internal-parallel.Rd | 4 tune-2.1.0/tune/man/last_fit.Rd | 2 tune-2.1.0/tune/man/merge.recipe.Rd | 2 tune-2.1.0/tune/man/min_grid.Rd | 2 tune-2.1.0/tune/man/resample_weights_utils.Rd |only tune-2.1.0/tune/man/show_best.Rd | 2 tune-2.1.0/tune/man/tune-internal-functions.Rd | 4 tune-2.1.0/tune/man/tune-package.Rd |only tune-2.1.0/tune/man/tune_bayes.Rd | 8 tune-2.1.0/tune/man/tune_grid.Rd | 6 tune-2.1.0/tune/tests/testthat/Rplots.pdf |binary tune-2.1.0/tune/tests/testthat/_snaps/augment.md | 40 tune-2.1.0/tune/tests/testthat/_snaps/checks.md | 63 + tune-2.1.0/tune/tests/testthat/_snaps/compute_metrics.md | 16 tune-2.1.0/tune/tests/testthat/_snaps/control.md |only tune-2.1.0/tune/tests/testthat/_snaps/engine-parameters.md | 4 tune-2.1.0/tune/tests/testthat/_snaps/gp_helpers.md |only tune-2.1.0/tune/tests/testthat/_snaps/grid.md | 8 tune-2.1.0/tune/tests/testthat/_snaps/int_pctl.md | 8 tune-2.1.0/tune/tests/testthat/_snaps/loop-over-all-stages-helpers-config-key.md | 20 tune-2.1.0/tune/tests/testthat/_snaps/loop-over-all-stages-helpers-make-static.md | 16 tune-2.1.0/tune/tests/testthat/_snaps/loop-over-all-stages-helpers-predict-all-types.md | 39 tune-2.1.0/tune/tests/testthat/_snaps/parallel.md | 45 tune-2.1.0/tune/tests/testthat/_snaps/resample.md | 18 tune-2.1.0/tune/tests/testthat/_snaps/tune_bayes.md |only tune-2.1.0/tune/tests/testthat/_snaps/weights.md |only tune-2.1.0/tune/tests/testthat/data/knn_gp.rds |binary tune-2.1.0/tune/tests/testthat/data/lm_bayes.rds |binary tune-2.1.0/tune/tests/testthat/data/rcv_results.rds |binary tune-2.1.0/tune/tests/testthat/data/test_objects.RData |binary tune-2.1.0/tune/tests/testthat/test-augment.R | 69 - tune-2.1.0/tune/tests/testthat/test-checks.R | 196 +++- tune-2.1.0/tune/tests/testthat/test-compute_metrics.R | 50 - tune-2.1.0/tune/tests/testthat/test-control.R |only tune-2.1.0/tune/tests/testthat/test-engine-parameters.R | 20 tune-2.1.0/tune/tests/testthat/test-gp_helpers.R |only tune-2.1.0/tune/tests/testthat/test-grid.R | 23 tune-2.1.0/tune/tests/testthat/test-int_pctl.R | 28 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-helpers-config-key.R | 20 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-helpers-data-subsets.R | 6 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-helpers-make-static.R | 14 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-helpers-predict-all-types.R | 472 ++++------ tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-helpers-train-post.R | 12 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-helpers-update-fit.R | 20 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-logging.R | 1 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-post-estimation-and-tuning-extract.R | 24 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-post-estimation-and-tuning.R | 24 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-post-estimation-no-tuning.R | 99 +- tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-post-no-estimation-or-tuning.R | 24 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-post-no-estimation-with-tuning-extract.R | 24 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-post-no-estimation-with-tuning.R | 24 tune-2.1.0/tune/tests/testthat/test-loop-over-all-stages-prediction-only.R | 24 tune-2.1.0/tune/tests/testthat/test-merge.R | 176 +-- tune-2.1.0/tune/tests/testthat/test-min-grid.R | 2 tune-2.1.0/tune/tests/testthat/test-quantile-regression.R |only tune-2.1.0/tune/tests/testthat/test-resample.R | 9 tune-2.1.0/tune/tests/testthat/test-select_best.R | 30 tune-2.1.0/tune/tests/testthat/test-symbol.R | 12 tune-2.1.0/tune/tests/testthat/test-tune_bayes.R |only tune-2.1.0/tune/tests/testthat/test-weights.R |only 119 files changed, 2602 insertions(+), 1461 deletions(-)
Title: Client for 'TGStat API'
Description: Allow function for using 'TGStat Stat API' and
'TGStat Search API', for more details see <https://api.tgstat.ru/docs/ru/start/intro.html>.
'TGStat' provide telegram channel analytics data.
Author: Alexey Seleznev [aut, cre]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rtgstat versions 0.3.4 dated 2024-10-25 and 0.3.6 dated 2026-04-17
DESCRIPTION | 15 +++++++++------ MD5 | 23 ++++++++++++++++------- NAMESPACE | 1 + NEWS.md | 9 +++++++++ R/rtgstat_package.R | 2 +- R/tg_api_usage.R | 10 +++++----- R/utils.R | 5 ++++- R/zzz.R | 2 -- tests |only 9 files changed, 45 insertions(+), 22 deletions(-)
Title: Group Iterative Multiple Model Estimation
Description: Data-driven approach for arriving at person-specific time series models. The method first identifies which relations replicate across the majority of individuals to detect signal from noise. These group-level relations are then used as a foundation for starting the search for person-specific (or individual-level) relations. See Gates & Molenaar (2012) <doi:10.1016/j.neuroimage.2012.06.026>.
Author: Stephanie Lane [aut, trl],
Kathleen M Gates [aut, cre, ccp],
Zachary Fisher [aut],
Cara Arizmendi [aut],
Peter Molenaar [aut, ccp],
Edgar Merkle [ctb],
Michael Hallquist [ctb],
Hallie Pike [ctb],
Teague Henry [ctb],
Kelly Duffy [ctb],
Lan Luo [ctb],
[...truncated...]
Maintainer: Kathleen M Gates <gateskm@email.unc.edu>
Diff between gimme versions 0.9.4 dated 2026-03-25 and 10.0 dated 2026-04-17
DESCRIPTION | 8 +- MD5 | 52 +++++++------- R/aggSEM.R | 52 +++++++++----- R/final.org.R | 27 +++++-- R/gimme.R | 115 ++++++++++++++++++++----------- R/highest.mi.R | 50 +++++++++---- R/indSEM.R | 48 ++++++++----- R/indiv.search.R | 16 ++-- R/search.paths.R | 34 +++++---- R/search.paths.ind.R | 158 +++++++++++++++++++++++++------------------ R/search.paths.ms.R | 28 ++++--- R/subgroupStage.R | 74 +++++++++++--------- README.md | 4 - inst/doc/gimme_vignette.R | 2 inst/doc/gimme_vignette.Rmd | 4 - inst/doc/gimme_vignette.html | 21 ++--- man/aggSEM.Rd | 14 ++- man/final.org.Rd | 4 - man/gimmeSEM.Rd | 30 +++++--- man/highest.mi.Rd | 12 ++- man/indSEM.Rd | 14 ++- man/indiv.search.Rd | 6 + man/search.paths.Rd | 6 + man/search.paths.ind.Rd | 6 + man/search.paths.ms.Rd | 4 - man/subgroupStage.Rd | 3 vignettes/gimme_vignette.Rmd | 4 - 27 files changed, 498 insertions(+), 298 deletions(-)
Title: Performance Measures for 'mlr3'
Description: Implements multiple performance measures for supervised
learning. Includes over 40 measures for regression and
classification. Additionally, meta information about the performance
measures can be queried, e.g. what the best and worst possible
performances scores are.
Author: Michel Lang [aut] ,
Martin Binder [ctb],
Marc Becker [cre, aut] ,
Lona Koers [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3measures versions 1.2.0 dated 2025-11-25 and 1.3.0 dated 2026-04-17
DESCRIPTION | 6 +- MD5 | 118 +++++++++++++++++++++--------------------- NAMESPACE | 2 NEWS.md | 8 ++ R/binary_auc.R | 100 ++++++++++++++++++++++++++++++++--- R/binary_dor.R | 4 - R/binary_fbeta.R | 4 - R/binary_fdr.R | 4 - R/binary_fn.R | 4 - R/binary_fnr.R | 4 - R/binary_fomr.R | 4 - R/binary_fp.R | 4 - R/binary_fpr.R | 4 - R/binary_gmean.R | 4 - R/binary_gpr.R | 6 +- R/binary_npv.R | 4 - R/binary_ppv.R | 4 - R/binary_tn.R | 4 - R/binary_tnr.R | 4 - R/binary_tp.R | 4 - R/binary_tpr.R | 4 - R/classif_auc.R | 37 +++++++------ R/classif_logloss.R | 5 + R/classif_mbrier.R | 4 - R/classif_mcc.R | 19 ++++-- R/confusion_matrix.R | 11 ++- R/helper.R | 19 ++++-- R/measures.R | 45 ++++++++++------ R/regr_ktau.R | 3 - R/regr_rmse.R | 11 +++ R/regr_rrse.R | 1 R/regr_rse.R | 1 R/regr_smape.R | 6 +- R/zzz.R | 5 + build/partial.rdb |binary man/auc.Rd | 27 +++++++++ man/dor.Rd | 8 ++ man/fbeta.Rd | 16 +++++ man/fdr.Rd | 8 ++ man/fn.Rd | 8 ++ man/fnr.Rd | 8 ++ man/fomr.Rd | 8 ++ man/fp.Rd | 8 ++ man/fpr.Rd | 8 ++ man/gmean.Rd | 8 ++ man/gpr.Rd | 8 ++ man/ktau.Rd | 3 - man/logloss.Rd | 5 + man/mbrier.Rd | 8 ++ man/mcc.Rd | 23 ++++++-- man/measures.Rd | 2 man/npv.Rd | 8 ++ man/ppv.Rd | 17 +++++- man/smape.Rd | 10 ++- man/tn.Rd | 8 ++ man/tnr.Rd | 17 +++++- man/tp.Rd | 8 ++ man/tpr.Rd | 19 +++++- tests/testthat/test_binary.R | 87 ++++++++++++++++++++++++++++++ tests/testthat/test_classif.R | 16 +++-- 60 files changed, 607 insertions(+), 206 deletions(-)
Title: Interface for the 'Finnish Biodiversity Information Facility'
API
Description: A programmatic interface to the 'Finnish Biodiversity Information
Facility' ('FinBIF') API (<https://api.laji.fi>). 'FinBIF' aggregates
Finnish biodiversity data from multiple sources in a single open access
portal for researchers, citizen scientists, industry and government.
'FinBIF' allows users of biodiversity information to find, access, combine
and visualise data on Finnish plants, animals and microorganisms. The
'finbif' package makes the publicly available data in 'FinBIF' easily
accessible to programmers. Biodiversity information is available on taxonomy
and taxon occurrence. Occurrence data can be filtered by taxon, time,
location and other variables. The data accessed are conveniently
preformatted for subsequent analyses.
Author: Finnish Museum of Natural History - Luomus [cph] ,
Finnish Biodiversity Information Facility [cph] ,
William K. Morris [aut, cre]
Maintainer: William K. Morris <willi@mmorris.email>
Diff between finbif versions 0.9.13 dated 2026-03-04 and 0.9.14 dated 2026-04-17
DESCRIPTION | 8 MD5 | 100 NAMESPACE | 1 NEWS.md | 12 R/api_get.R | 4 R/finbif-package.R | 59 R/finbif_collections.R | 166 R/finbif_occurrence.R | 52 R/finbif_occurrence_load.R | 2 R/finbif_records.R | 34 R/finbif_request_token.R | 22 R/finbif_taxa.R | 7 R/sysdata.R | 16 R/sysdata.rda |binary R/utils.R | 9 R/variables.R | 2 R/zzz.R | 4 README.md | 2 build/vignette.rds |binary man/finbif-package.Rd | 35 man/finbif_occurrence.Rd | 2 man/finbif_occurrence_load.Rd | 2 man/finbif_request_token.Rd | 7 man/finbif_taxa.Rd | 3 man/variables.Rd | 2 tests/fixtures/finbif_cache_db_timeout.yml | 20 tests/fixtures/finbif_cache_file_timeout.yml | 20 tests/fixtures/finbif_cache_timeout.yml | 20 tests/fixtures/finbif_check_taxa.yml | 8 tests/fixtures/finbif_collections.yml |12342 ++++- tests/fixtures/finbif_informal_groups.yml | 4 tests/fixtures/finbif_last_mod1.yml | 6 tests/fixtures/finbif_last_mod2.yml | 6 tests/fixtures/finbif_last_mod3.yml | 6 tests/fixtures/finbif_metadata.yml | 235 tests/fixtures/finbif_occurrence.yml |13614 ++++-- tests/fixtures/finbif_occurrence_aggregate.yml |21131 +++++++++- tests/fixtures/finbif_occurrence_api_error.yml | 4 tests/fixtures/finbif_occurrence_compute_var_from_id_zero_rows.yml |12366 ++++- tests/fixtures/finbif_occurrence_dates.yml |21108 +++++++++ tests/fixtures/finbif_occurrence_load.yml | 110 tests/fixtures/finbif_occurrence_print.yml | 18 tests/fixtures/finbif_occurrence_select_local_area.yml | 6 tests/fixtures/finbif_taxa.yml | 24 tests/testthat/_snaps/caching.md | 6 tests/testthat/_snaps/finbif_collections.md | 544 tests/testthat/_snaps/finbif_metadata.md | 1 tests/testthat/_snaps/finbif_occurrence.md | 51 tests/testthat/_snaps/finbif_occurrence_load.md | 61 tests/testthat/test-finbif_occurrence_load.R | 30 tests/testthat/test-finbif_request_token.R | 16 51 files changed, 71318 insertions(+), 10990 deletions(-)
Title: Load Data from Facebook API Marketing
Description: Load data by campaigns, ads, ad sets and insights, ad account and business manager
from Facebook Marketing API into R. For more details see official documents by Facebook
Marketing API <https://developers.facebook.com/docs/marketing-api>.
Author: Alexey Seleznev [aut, cre]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rfacebookstat versions 2.13.1 dated 2025-08-20 and 2.14.0 dated 2026-04-17
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 5 +++++ R/fbGetAdSets.R | 2 +- R/fbGetMarketingStat.R | 5 ++++- R/fbParsers.R | 3 ++- R/zzz.R | 2 +- build/partial.rdb |binary inst/doc/rfacebookstat-authorization.html | 5 +++-- inst/doc/rfacebookstat-cost-data.html | 5 +++-- inst/doc/rfacebookstat-get-statistics.html | 5 +++-- 11 files changed, 35 insertions(+), 23 deletions(-)
Title: Data Class and Tools for Handling Spatial-Temporal Data
Description: Data class for increased interoperability working with
spatial-temporal data together with corresponding functions and
methods (conversions, basic calculations and basic data manipulation).
The class distinguishes between spatial, temporal and other dimensions
to facilitate the development and interoperability of tools build for
it. Additional features are name-based addressing of data and internal
consistency checks (e.g. checking for the right data order in
calculations).
Author: Jan Philipp Dietrich [aut, cre] ,
Benjamin Leon Bodirsky [aut] ,
Markus Bonsch [aut],
Florian Humpenoeder [aut] ,
Stephen Bi [aut],
Kristine Karstens [aut] ,
Debbora Leip [aut] ,
Pascal Sauer [aut] ,
Lavinia Baumstark [ctb] ,
Christoph Bertram [ctb], [...truncated...]
Maintainer: Jan Philipp Dietrich <dietrich@pik-potsdam.de>
Diff between magclass versions 6.13.2 dated 2024-01-18 and 7.4.3 dated 2026-04-17
magclass-6.13.2/magclass/R/add_dimension.R |only magclass-6.13.2/magclass/tests/testthat/test-add_dimension.R |only magclass-7.4.3/magclass/DESCRIPTION | 99 magclass-7.4.3/magclass/MD5 | 438 ++- magclass-7.4.3/magclass/NAMESPACE | 13 magclass-7.4.3/magclass/R/addDim.R |only magclass-7.4.3/magclass/R/add_columns.R | 7 magclass-7.4.3/magclass/R/as.RasterBrick.R | 16 magclass-7.4.3/magclass/R/as.SpatRaster.R | 16 magclass-7.4.3/magclass/R/as.SpatRasterDataset.R | 1 magclass-7.4.3/magclass/R/as.SpatVector.R | 3 magclass-7.4.3/magclass/R/as.array.R | 22 magclass-7.4.3/magclass/R/as.data.frame.R | 9 magclass-7.4.3/magclass/R/as.magpie.R | 24 magclass-7.4.3/magclass/R/as_tibble.R | 6 magclass-7.4.3/magclass/R/cbind.magpie.R |only magclass-7.4.3/magclass/R/clean_magpie.R | 11 magclass-7.4.3/magclass/R/colMeans-method.R | 2 magclass-7.4.3/magclass/R/colSums-method.R | 3 magclass-7.4.3/magclass/R/collapseDim.R | 1 magclass-7.4.3/magclass/R/collapseNames.R | 3 magclass-7.4.3/magclass/R/commonYears.R |only magclass-7.4.3/magclass/R/complete_magpie.R | 16 magclass-7.4.3/magclass/R/convergence.R | 30 magclass-7.4.3/magclass/R/copy.attributes.R | 33 magclass-7.4.3/magclass/R/copy.magpie.R | 5 magclass-7.4.3/magclass/R/dimCode.R | 5 magclass-7.4.3/magclass/R/dimExists.R | 55 magclass-7.4.3/magclass/R/dimOrder.R | 3 magclass-7.4.3/magclass/R/dimReduce.R | 8 magclass-7.4.3/magclass/R/dimSums.R | 3 magclass-7.4.3/magclass/R/duplicates_check.R | 10 magclass-7.4.3/magclass/R/escapeRegex.R | 11 magclass-7.4.3/magclass/R/extend.R |only magclass-7.4.3/magclass/R/fulldim.R | 10 magclass-7.4.3/magclass/R/getCPR.R | 29 magclass-7.4.3/magclass/R/getCells.R | 3 magclass-7.4.3/magclass/R/getComment.R | 25 magclass-7.4.3/magclass/R/getCoords.R | 3 magclass-7.4.3/magclass/R/getDim.R | 51 magclass-7.4.3/magclass/R/getItems.R | 7 magclass-7.4.3/magclass/R/getNames.R | 5 magclass-7.4.3/magclass/R/getRegionList.R | 7 magclass-7.4.3/magclass/R/getRegions.R | 5 magclass-7.4.3/magclass/R/getSets.R | 73 magclass-7.4.3/magclass/R/getYears.R | 48 magclass-7.4.3/magclass/R/guessResolution.R |only magclass-7.4.3/magclass/R/hasCoords.R | 16 magclass-7.4.3/magclass/R/hasSets.R | 12 magclass-7.4.3/magclass/R/head.magpie.R | 29 magclass-7.4.3/magclass/R/ifelse.R | 22 magclass-7.4.3/magclass/R/is-methods.R | 32 magclass-7.4.3/magclass/R/is.magpie.R | 7 magclass-7.4.3/magclass/R/is.spatial.R | 8 magclass-7.4.3/magclass/R/is.temporal.R | 17 magclass-7.4.3/magclass/R/isYear.R | 3 magclass-7.4.3/magclass/R/log-method.R | 22 magclass-7.4.3/magclass/R/lowpass.R | 9 magclass-7.4.3/magclass/R/magpie-class.R | 178 + magclass-7.4.3/magclass/R/magpie_expand.R | 16 magclass-7.4.3/magclass/R/magpie_expand_dim.R | 19 magclass-7.4.3/magclass/R/magpiesort.R | 28 magclass-7.4.3/magclass/R/magpply.R | 66 magclass-7.4.3/magclass/R/matchDim.R |only magclass-7.4.3/magclass/R/maxample.R | 1 magclass-7.4.3/magclass/R/mbind.R | 98 magclass-7.4.3/magclass/R/mcalc.R | 3 magclass-7.4.3/magclass/R/mplot.R |only magclass-7.4.3/magclass/R/mselect.R | 5 magclass-7.4.3/magclass/R/ncells.R | 1 magclass-7.4.3/magclass/R/ndim.R | 1 magclass-7.4.3/magclass/R/new.magpie.R | 18 magclass-7.4.3/magclass/R/pmax-method.R |only magclass-7.4.3/magclass/R/pmin-method.R | 50 magclass-7.4.3/magclass/R/population_magpie.R | 6 magclass-7.4.3/magclass/R/print.magpie.R | 9 magclass-7.4.3/magclass/R/read.magpie.R | 7 magclass-7.4.3/magclass/R/read.report.R | 44 magclass-7.4.3/magclass/R/readComment.R | 4 magclass-7.4.3/magclass/R/readMagpieMZ.R | 26 magclass-7.4.3/magclass/R/readMagpieOther.R | 7 magclass-7.4.3/magclass/R/replace_non_finite.R | 32 magclass-7.4.3/magclass/R/round-method.R | 25 magclass-7.4.3/magclass/R/rowMeans-method.R | 2 magclass-7.4.3/magclass/R/rowSums-method.R | 3 magclass-7.4.3/magclass/R/sameDims.R |only magclass-7.4.3/magclass/R/setCells.R | 4 magclass-7.4.3/magclass/R/setComment.R | 4 magclass-7.4.3/magclass/R/setItems.R | 1 magclass-7.4.3/magclass/R/setNames_method.R | 24 magclass-7.4.3/magclass/R/setYears.R | 4 magclass-7.4.3/magclass/R/show.R | 1 magclass-7.4.3/magclass/R/sizeCheck.R | 4 magclass-7.4.3/magclass/R/spatRasterToDataset.R | 1 magclass-7.4.3/magclass/R/str.magpie.R | 1 magclass-7.4.3/magclass/R/suppressSpecificWarnings.R | 1 magclass-7.4.3/magclass/R/sysdata.R | 6 magclass-7.4.3/magclass/R/tail.magpie.R | 12 magclass-7.4.3/magclass/R/tidy2magpie.R | 4 magclass-7.4.3/magclass/R/time_interpolate.R | 35 magclass-7.4.3/magclass/R/unitjoin.R |only magclass-7.4.3/magclass/R/unitsplit.R | 3 magclass-7.4.3/magclass/R/unwrap.R | 7 magclass-7.4.3/magclass/R/where.R | 1 magclass-7.4.3/magclass/R/withAlignedDims.R |only magclass-7.4.3/magclass/R/wrap.R | 143 - magclass-7.4.3/magclass/R/write.magpie.R | 58 magclass-7.4.3/magclass/R/write.report.R | 6 magclass-7.4.3/magclass/R/write.report2.R | 3 magclass-7.4.3/magclass/R/writeNC.R |only magclass-7.4.3/magclass/README.md | 13 magclass-7.4.3/magclass/build/partial.rdb |binary magclass-7.4.3/magclass/build/vignette.rds |binary magclass-7.4.3/magclass/inst/doc/magclass-concept.R | 24 magclass-7.4.3/magclass/inst/doc/magclass-concept.Rmd | 10 magclass-7.4.3/magclass/inst/doc/magclass-concept.html | 295 +- magclass-7.4.3/magclass/inst/doc/magclass-expansion.R | 18 magclass-7.4.3/magclass/inst/doc/magclass-expansion.html | 193 - magclass-7.4.3/magclass/inst/doc/magclass.R | 85 magclass-7.4.3/magclass/inst/doc/magclass.Rmd | 13 magclass-7.4.3/magclass/inst/doc/magclass.html | 1128 +++++----- magclass-7.4.3/magclass/inst/doc/magclass6.R | 32 magclass-7.4.3/magclass/inst/doc/magclass6.Rmd | 6 magclass-7.4.3/magclass/inst/doc/magclass6.html | 366 +-- magclass-7.4.3/magclass/man/addDim.Rd |only magclass-7.4.3/magclass/man/add_columns.Rd | 11 magclass-7.4.3/magclass/man/add_dimension.Rd | 31 magclass-7.4.3/magclass/man/as.RasterBrick.Rd | 11 magclass-7.4.3/magclass/man/as.SpatRaster.Rd | 13 magclass-7.4.3/magclass/man/as.SpatRasterDataset.Rd | 12 magclass-7.4.3/magclass/man/as.SpatVector.Rd | 13 magclass-7.4.3/magclass/man/as.array-methods.Rd | 12 magclass-7.4.3/magclass/man/as.data.frame-methods.Rd | 12 magclass-7.4.3/magclass/man/as_tibble.magpie.Rd | 24 magclass-7.4.3/magclass/man/cbind.magpie.Rd |only magclass-7.4.3/magclass/man/clean_magpie.Rd | 6 magclass-7.4.3/magclass/man/colSums-methods.Rd | 6 magclass-7.4.3/magclass/man/collapseDim.Rd | 9 magclass-7.4.3/magclass/man/collapseNames.Rd | 9 magclass-7.4.3/magclass/man/commonYears.Rd |only magclass-7.4.3/magclass/man/complete_magpie.Rd | 8 magclass-7.4.3/magclass/man/convergence.Rd | 26 magclass-7.4.3/magclass/man/copy.attributes.Rd | 11 magclass-7.4.3/magclass/man/copy.magpie.Rd | 8 magclass-7.4.3/magclass/man/dimCode.Rd | 9 magclass-7.4.3/magclass/man/dimExists.Rd | 22 magclass-7.4.3/magclass/man/dimOrder.Rd | 10 magclass-7.4.3/magclass/man/dimReduce.Rd | 13 magclass-7.4.3/magclass/man/dimSums.Rd | 5 magclass-7.4.3/magclass/man/extend.Rd |only magclass-7.4.3/magclass/man/fulldim.Rd | 14 magclass-7.4.3/magclass/man/getCPR.Rd | 15 magclass-7.4.3/magclass/man/getCells.Rd | 15 magclass-7.4.3/magclass/man/getComment.Rd | 23 magclass-7.4.3/magclass/man/getCoords.Rd | 15 magclass-7.4.3/magclass/man/getDim.Rd | 25 magclass-7.4.3/magclass/man/getItems.Rd | 15 magclass-7.4.3/magclass/man/getNames.Rd | 15 magclass-7.4.3/magclass/man/getRegionList.Rd | 15 magclass-7.4.3/magclass/man/getRegions.Rd | 15 magclass-7.4.3/magclass/man/getSets.Rd | 15 magclass-7.4.3/magclass/man/getYears.Rd | 21 magclass-7.4.3/magclass/man/guessResolution.Rd |only magclass-7.4.3/magclass/man/hasCoords.Rd | 12 magclass-7.4.3/magclass/man/hasSets.Rd | 12 magclass-7.4.3/magclass/man/head.magpie.Rd | 14 magclass-7.4.3/magclass/man/is.temporal.Rd | 14 magclass-7.4.3/magclass/man/isYear.Rd | 12 magclass-7.4.3/magclass/man/lowpass.Rd | 11 magclass-7.4.3/magclass/man/magclass-package.Rd | 1 magclass-7.4.3/magclass/man/magpie-pmin-pmax.Rd |only magclass-7.4.3/magclass/man/magpie_expand.Rd | 11 magclass-7.4.3/magclass/man/magpiesort.Rd | 9 magclass-7.4.3/magclass/man/magpply.Rd | 8 magclass-7.4.3/magclass/man/matchDim.Rd |only magclass-7.4.3/magclass/man/maxample.Rd | 9 magclass-7.4.3/magclass/man/mbind.Rd | 8 magclass-7.4.3/magclass/man/mcalc.Rd | 6 magclass-7.4.3/magclass/man/mplot.Rd |only magclass-7.4.3/magclass/man/mselect.Rd | 6 magclass-7.4.3/magclass/man/ncells.Rd | 12 magclass-7.4.3/magclass/man/ndim.Rd | 12 magclass-7.4.3/magclass/man/new.magpie.Rd | 6 magclass-7.4.3/magclass/man/print.magpie.Rd | 8 magclass-7.4.3/magclass/man/read.magpie.Rd | 8 magclass-7.4.3/magclass/man/read.report.Rd | 8 magclass-7.4.3/magclass/man/replace_non_finite.Rd | 14 magclass-7.4.3/magclass/man/rowSums-methods.Rd | 6 magclass-7.4.3/magclass/man/sameDims.Rd |only magclass-7.4.3/magclass/man/setItems.Rd | 15 magclass-7.4.3/magclass/man/setNames-methods.Rd | 15 magclass-7.4.3/magclass/man/show-methods.Rd | 9 magclass-7.4.3/magclass/man/spatRasterToDataset.Rd | 5 magclass-7.4.3/magclass/man/str.magpie.Rd | 8 magclass-7.4.3/magclass/man/time_interpolate.Rd | 6 magclass-7.4.3/magclass/man/unitjoin.Rd |only magclass-7.4.3/magclass/man/unitsplit.Rd | 6 magclass-7.4.3/magclass/man/unwrap.Rd | 11 magclass-7.4.3/magclass/man/where.Rd | 6 magclass-7.4.3/magclass/man/withAlignedDims.Rd |only magclass-7.4.3/magclass/man/wrap.Rd | 11 magclass-7.4.3/magclass/man/write.magpie.Rd | 19 magclass-7.4.3/magclass/man/write.report.Rd | 8 magclass-7.4.3/magclass/man/write.report2.Rd | 8 magclass-7.4.3/magclass/man/writeNC.Rd |only magclass-7.4.3/magclass/tests/testthat/test-addDim.R |only magclass-7.4.3/magclass/tests/testthat/test-collapseDim.R | 2 magclass-7.4.3/magclass/tests/testthat/test-commonYears.R |only magclass-7.4.3/magclass/tests/testthat/test-convergence.R | 64 magclass-7.4.3/magclass/tests/testthat/test-dimExists.R | 28 magclass-7.4.3/magclass/tests/testthat/test-dimSums.R | 6 magclass-7.4.3/magclass/tests/testthat/test-extend.R |only magclass-7.4.3/magclass/tests/testthat/test-fulldim.R | 12 magclass-7.4.3/magclass/tests/testthat/test-getDim.R | 13 magclass-7.4.3/magclass/tests/testthat/test-getItems.R | 14 magclass-7.4.3/magclass/tests/testthat/test-getReduce.R | 12 magclass-7.4.3/magclass/tests/testthat/test-ifelse.R | 16 magclass-7.4.3/magclass/tests/testthat/test-magpie.R | 12 magclass-7.4.3/magclass/tests/testthat/test-magpie_expand.R | 8 magclass-7.4.3/magclass/tests/testthat/test-magpply.R | 4 magclass-7.4.3/magclass/tests/testthat/test-matchDim.R |only magclass-7.4.3/magclass/tests/testthat/test-mbind.R | 13 magclass-7.4.3/magclass/tests/testthat/test-mcalc.R | 26 magclass-7.4.3/magclass/tests/testthat/test-mplot.R |only magclass-7.4.3/magclass/tests/testthat/test-pmin-pmax.R |only magclass-7.4.3/magclass/tests/testthat/test-printmagpie.R | 2 magclass-7.4.3/magclass/tests/testthat/test-raster.R | 2 magclass-7.4.3/magclass/tests/testthat/test-readwritemagpie.R | 47 magclass-7.4.3/magclass/tests/testthat/test-readwritereport.R | 6 magclass-7.4.3/magclass/tests/testthat/test-replace_non_finite.R | 12 magclass-7.4.3/magclass/tests/testthat/test-time_interpolate.R | 7 magclass-7.4.3/magclass/tests/testthat/test-unitsplit.R | 8 magclass-7.4.3/magclass/tests/testthat/test-various.R | 27 magclass-7.4.3/magclass/vignettes/magclass-concept.Rmd | 10 magclass-7.4.3/magclass/vignettes/magclass.Rmd | 13 magclass-7.4.3/magclass/vignettes/magclass6.Rmd | 6 236 files changed, 3370 insertions(+), 2269 deletions(-)
Title: Fetch and Explore the Cornell Lab of Ornithology Open Tree of
Life Avian Phylogeny
Description: Fetches the Cornell Lab of Ornithology Open Tree of Life (clootl) tree in a specified taxonomy. Optionally prune it to a given set of study taxa. Provide a recommended citation list for the studies that informed the extracted tree. Tree generated as described in McTavish et al. (2024) <doi:10.1101/2024.05.20.595017>.
Author: Eliot Miller [aut, cre],
Emily Jane McTavish [aut],
Luna L. Sanchez Reyes [ctb, aut]
Maintainer: Eliot Miller <clootlmaintainers@gmail.com>
Diff between clootl versions 0.1.2 dated 2025-10-29 and 0.1.3 dated 2026-04-17
DESCRIPTION | 8 - MD5 | 39 +++---- NAMESPACE | 1 NEWS.md | 4 R/data.R | 56 ++++++---- R/extractTree.R | 228 +++++++++++++++++++++++------------------- R/getCitations.R | 41 +++---- R/sampleTrees.R | 30 ++--- R/utils.R | 93 ++++++++++++----- R/zzz.R | 2 README.md | 42 +++++-- data/clootl_data.rda |binary man/clootl_data.Rd | 56 ++++++---- man/extractTree.Rd | 34 ++---- man/getCitations.Rd | 12 -- man/get_avesdata_repo_path.Rd |only man/sampleTrees.Rd | 20 +-- man/set_avesdata_repo_path.Rd | 8 + man/taxonomyGet.Rd | 5 man/treeGet.Rd | 4 tests/testthat/test_basics.R | 185 ++++++++++++++++++++++++++++++---- 21 files changed, 565 insertions(+), 303 deletions(-)
Title: Seawater Carbonate Chemistry
Description: Calculates parameters of the seawater carbonate system and assists in design of ocean acidification perturbation experiments.
Author: Jean-Pierre Gattuso [aut],
James Orr [aut, cre, cph],
Jean-Marie Epitalon [aut],
Heloise Lavigne [aut],
Bernard Gentili [ctb],
Mathilde Hagens [ctb],
Andreas Hofmann [ctb],
Jens-Daniel Mueller [ctb],
Aurelien Proye [ctb],
James Rae [ctb],
Karline Soe [...truncated...]
Maintainer: James Orr <james.orr@lsce.ipsl.fr>
Diff between seacarb versions 3.3.3 dated 2024-02-15 and 3.3.4 dated 2026-04-17
ChangeLog | 5 ++++- DESCRIPTION | 21 +++++++++++---------- MD5 | 4 ++-- 3 files changed, 17 insertions(+), 13 deletions(-)
Title: Interface for the 'QuickJS-NG' Lightweight 'JavaScript' Engine
Description: An 'R' interface to the 'QuickJS' portable 'JavaScript'
engine. The engine and all 'R' to 'JavaScript' interoperability is bundled
within the package, requiring no dependencies beyond a 'C' compiler.
Author: Andrew R. Johnson [aut, cre] ,
QuickJS Authors [cph] ,
QuickJS-NG Authors [cph]
Maintainer: Andrew R. Johnson <andrew.johnson@arjohnsonau.com>
Diff between QuickJSR versions 1.9.1-2 dated 2026-04-15 and 1.9.2 dated 2026-04-17
DESCRIPTION | 6 LICENSE | 4 MD5 |only NAMESPACE | 16 NEWS.md | 192 +++--- R/JSContext.R | 340 +++++----- R/qjs.R | 158 ++-- R/quickjsr-package.R | 20 R/zzz.R | 8 README.md | 260 ++++---- build/vignette.rds |binary inst/doc/working_with_js_types.R | 80 +- inst/doc/working_with_js_types.Rmd | 224 +++---- inst/doc/working_with_js_types.html | 1043 ++++++++++++++++----------------- inst/tinytest/test_JSContext.R | 88 +- inst/tinytest/test_data_conversion.R | 144 ++-- inst/tinytest/test_qjs_eval.R | 16 inst/tinytest/test_to_json_asis.R | 20 inst/tinytest/test_to_json_dataframe.R | 32 - inst/tinytest/test_to_json_date.R | 28 inst/tinytest/test_to_json_factor.R | 12 inst/tinytest/test_to_json_matrix.R | 22 man/JSContext-method-assign.Rd | 64 +- man/JSContext-method-call.Rd | 66 +- man/JSContext-method-get.Rd | 60 - man/JSContext-method-source.Rd | 70 +- man/JSContext-method-validate.Rd | 58 - man/JSContext.Rd | 42 - man/QuickJSR-package.Rd | 58 - man/from_json.Rd | 34 - man/qjs_eval.Rd | 56 - man/quickjs_version.Rd | 28 man/to_json.Rd | 38 - src/include/cpp11.hpp | 4 src/include/cpp11/R.hpp | 14 src/include/cpp11/altrep.hpp | 4 src/include/cpp11/as.hpp | 4 src/include/cpp11/attribute_proxy.hpp | 4 src/include/cpp11/data_frame.hpp | 62 - src/include/cpp11/declarations.hpp | 4 src/include/cpp11/doubles.hpp | 4 src/include/cpp11/external_pointer.hpp | 4 src/include/cpp11/function.hpp | 18 src/include/cpp11/integers.hpp | 4 src/include/cpp11/list.hpp | 11 src/include/cpp11/list_of.hpp | 4 src/include/cpp11/logicals.hpp | 4 src/include/cpp11/matrix.hpp | 4 src/include/cpp11/named_arg.hpp | 6 src/include/cpp11/protect.hpp | 12 src/include/cpp11/r_bool.hpp | 4 src/include/cpp11/r_string.hpp | 4 src/include/cpp11/r_vector.hpp | 14 src/include/cpp11/raws.hpp | 4 src/include/cpp11/sexp.hpp | 9 src/include/cpp11/strings.hpp | 4 src/init.cpp | 1 tests/tinytest.R | 10 vignettes/working_with_js_types.Rmd | 224 +++---- 59 files changed, 1866 insertions(+), 1862 deletions(-)
Title: Persistence Homology Utilities
Description: A low-level package for hosting persistence data. It is part of the
'TDAverse' suite of packages, which is designed to provide a collection of
packages for enabling machine learning and data science tasks using
persistent homology. Implements a class for hosting persistence data, a
number of coercers from and to already existing and used data structures
from other packages and functions to compute distances between persistence
diagrams. A formal definition and study of bottleneck and Wasserstein
distances can be found in Bubenik, Scott and Stanley (2023)
<doi:10.1007/s41468-022-00103-8>. Their implementation in 'phutil' relies on
the 'C++' Hera library developed by Kerber, Morozov and Nigmetov (2017)
<doi:10.1145/3064175>.
Author: Aymeric Stamm [aut, cre] ,
Jason Cory Brunson [aut] ,
Michael Kerber [ctb] ,
Dmitriy Morozov [ctb] ,
Arnur Nigmetov [ctb]
Maintainer: Aymeric Stamm <aymeric.stamm@cnrs.fr>
Diff between phutil versions 0.0.1-2 dated 2026-04-15 and 0.0.2 dated 2026-04-17
phutil-0.0.1-2/phutil/inst/include |only phutil-0.0.2/phutil/DESCRIPTION | 14 phutil-0.0.2/phutil/MD5 |only phutil-0.0.2/phutil/NAMESPACE | 3 phutil-0.0.2/phutil/NEWS.md | 31 + phutil-0.0.2/phutil/R/persistence-class.R | 52 ++ phutil-0.0.2/phutil/build/partial.rdb |binary phutil-0.0.2/phutil/build/vignette.rds |binary phutil-0.0.2/phutil/inst/doc/persistence-class.html | 3 phutil-0.0.2/phutil/inst/doc/validation-benchmark.R | 48 +- phutil-0.0.2/phutil/inst/doc/validation-benchmark.html | 271 ++++++------- phutil-0.0.2/phutil/inst/doc/validation-benchmark.qmd | 55 +- phutil-0.0.2/phutil/inst/tinytest/test-persistence-class.R | 32 + phutil-0.0.2/phutil/inst/tinytest/test-persistence.R |only phutil-0.0.2/phutil/man/persistence.Rd | 19 phutil-0.0.2/phutil/src/Makevars | 2 phutil-0.0.2/phutil/vignettes/validation-benchmark.qmd | 55 +- 17 files changed, 384 insertions(+), 201 deletions(-)
Title: Sweave Drivers with Extra Tricks Up their Sleeves
Description: *The package is deprecated. It uses the standard drivers
on R >= 4.6.0 since they incorporate all the functionalities below.*
Weave and tangle drivers for Sweave extending the standard drivers.
RweaveExtraLatex and RtangleExtra provide options to completely
ignore code chunks on weaving, tangling, or both. Chunks ignored on
weaving are not parsed, yet are written out verbatim on tangling.
Chunks ignored on tangling may be evaluated as usual on weaving, but
are completely left out of the tangled scripts. The driver
RtangleExtra also provides options to control the separation between
code chunks in the tangled script, and to specify the extension of
the file name (or remove it entirely) when splitting is selected.
Author: Vincent Goulet [cre, aut] ,
R Core Team [aut]
Maintainer: Vincent Goulet <vincent.goulet@act.ulaval.ca>
Diff between RweaveExtra versions 1.3-0 dated 2025-10-29 and 1.3-1 dated 2026-04-17
DESCRIPTION | 33 +++++++++++++++++---------------- MD5 | 19 +++++++++++-------- NAMESPACE | 10 ++++++---- R/RweaveExtra.R | 38 +++++++++++++++++++++----------------- build/partial.rdb |binary inst/NEWS.Rd | 12 ++++++++++++ man/RtangleExtra.Rd | 17 ++++++++++------- man/RweaveExtra-package.Rd | 5 ++++- man/RweaveExtraLatex.Rd | 14 ++++++++------ tests |only 10 files changed, 89 insertions(+), 59 deletions(-)
Title: Command Line Option Parser
Description: A command line parser inspired by Python's 'optparse' library to
be used with Rscript to write "#!" shebang scripts that accept short and
long flag/options.
Author: Trevor L. Davis [aut, cre] ,
Allen Day [aut] ,
Python Software Foundation [ctb] ,
Steve Lianoglou [ctb],
Jim Nikelski [ctb],
Kirill Mueller [ctb],
Peter Humburg [ctb],
Rich FitzJohn [ctb],
Gyu Jin Choi [ctb]
Maintainer: Trevor L. Davis <trevor.l.davis@gmail.com>
Diff between optparse versions 1.7.5 dated 2024-04-16 and 1.8.2 dated 2026-04-17
optparse-1.7.5/optparse/inst/doc/optparse.Rrst |only optparse-1.7.5/optparse/vignettes/optparse.Rrst |only optparse-1.8.2/optparse/DESCRIPTION | 27 optparse-1.8.2/optparse/MD5 | 42 optparse-1.8.2/optparse/NAMESPACE | 2 optparse-1.8.2/optparse/NEWS.md | 51 optparse-1.8.2/optparse/R/getopt.R |only optparse-1.8.2/optparse/R/optparse.R | 1325 +++++++++------- optparse-1.8.2/optparse/README.md | 127 - optparse-1.8.2/optparse/build/vignette.rds |binary optparse-1.8.2/optparse/exec/display_file.R | 53 optparse-1.8.2/optparse/exec/example.R | 103 - optparse-1.8.2/optparse/inst/doc/optparse.R | 12 optparse-1.8.2/optparse/inst/doc/optparse.Rmd |only optparse-1.8.2/optparse/inst/doc/optparse.html | 530 +++++- optparse-1.8.2/optparse/man/OptionParser-class.Rd | 19 optparse-1.8.2/optparse/man/OptionParser.Rd | 24 optparse-1.8.2/optparse/man/OptionParserOption-class.Rd | 72 optparse-1.8.2/optparse/man/add_make_option.Rd | 114 - optparse-1.8.2/optparse/man/parse_args.Rd | 39 optparse-1.8.2/optparse/man/print_help.Rd | 11 optparse-1.8.2/optparse/tests/testthat/_snaps |only optparse-1.8.2/optparse/tests/testthat/test-getopt.R |only optparse-1.8.2/optparse/tests/testthat/test-optparse.R | 879 +++++++--- optparse-1.8.2/optparse/vignettes/optparse.Rmd |only 25 files changed, 2208 insertions(+), 1222 deletions(-)
Title: "Risk Model Regression and Analysis with Complex Non-Linear
Models"
Description: Performs survival analysis using general non-linear models. Risk models can be the sum or product of terms. Each term is the product of exponential/linear functions of covariates. Additionally sub-terms can be defined as a sum of exponential, linear threshold, and step functions. Cox Proportional hazards <https://en.wikipedia.org/wiki/Proportional_hazards_model>, Poisson <https://en.wikipedia.org/wiki/Poisson_regression>, and Fine-Gray competing risks <https://www.publichealth.columbia.edu/research/population-health-methods/competing-risk-analysis> regression are supported. This work was sponsored by NASA Grants 80NSSC19M0161 and 80NSSC23M0129 through a subcontract from the National Council on Radiation Protection and Measurements (NCRP). The computing for this project was performed on the Beocat Research Cluster at Kansas State University, which is funded in part by NSF grants CNS-1006860, EPS-1006860, EPS-0919443, ACI-1440548, CHE-1726332, and NIH P20GM113109.
Author: Eric King-Giunta [aut, cre] ,
Amir Bahadori [ctb] ,
Dan Andresen [ctb] ,
Linda Walsh [ctb] ,
Benjamin French [ctb] ,
Lawrence Dauer [ctb] ,
John Boice Jr [ctb] ,
Kansas State University [cph],
NASA [fnd],
NCRP [fnd],
NRC [fnd]
Maintainer: Eric King-Giunta <egiunta@ksu.edu>
Diff between Colossus versions 1.4.10 dated 2026-02-20 and 1.5 dated 2026-04-17
Colossus-1.4.10/Colossus/cleanup |only Colossus-1.4.10/Colossus/cleanup.win |only Colossus-1.4.10/Colossus/src/Makevars.in |only Colossus-1.4.10/Colossus/src/Step_Calc.cpp |only Colossus-1.4.10/Colossus/src/Step_Calc.h |only Colossus-1.4.10/Colossus/tests/testthat/test-Cox_Plot.R |only Colossus-1.4.10/Colossus/tests/testthat/test-Cox_Regression.R |only Colossus-1.4.10/Colossus/tests/testthat/test-Poisson_Regression.R |only Colossus-1.4.10/Colossus/tests/testthat/test-Poisson_Residual.R |only Colossus-1.4.10/Colossus/tools |only Colossus-1.5/Colossus/DESCRIPTION | 13 Colossus-1.5/Colossus/MD5 | 320 +-- Colossus-1.5/Colossus/NEWS.md | 16 Colossus-1.5/Colossus/R/BasicRun.R | 757 ++++++--- Colossus-1.5/Colossus/R/CaseControl_Regression.R | 30 Colossus-1.5/Colossus/R/Cox_Regression.R | 99 - Colossus-1.5/Colossus/R/LogitRegression.R | 9 Colossus-1.5/Colossus/R/ObjValidate.R | 207 +- Colossus-1.5/Colossus/R/PlotTypes.R | 99 - Colossus-1.5/Colossus/R/Poisson_Regression.R | 56 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Colossus-1.5/Colossus/inst/doc/count_time_tables.Rmd | 36 Colossus-1.5/Colossus/inst/doc/count_time_tables.html | 604 ++++--- Colossus-1.5/Colossus/man/CaseControlRun.Rd | 26 Colossus-1.5/Colossus/man/CoxRun.Rd | 26 Colossus-1.5/Colossus/man/CoxRunMulti.Rd | 24 Colossus-1.5/Colossus/man/Date_Shift.Rd | 2 Colossus-1.5/Colossus/man/EventAssignment.poisres.Rd | 2 Colossus-1.5/Colossus/man/EventAssignment.poisresbound.Rd | 2 Colossus-1.5/Colossus/man/Event_Count_Gen.Rd | 14 Colossus-1.5/Colossus/man/Event_Time_Gen.Rd | 10 Colossus-1.5/Colossus/man/Joint_Multiple_Events.Rd | 14 Colossus-1.5/Colossus/man/LikelihoodBound.Rd | 4 Colossus-1.5/Colossus/man/LikelihoodBound.coxres.Rd | 4 Colossus-1.5/Colossus/man/LikelihoodBound.default.Rd | 4 Colossus-1.5/Colossus/man/LikelihoodBound.poisres.Rd | 4 Colossus-1.5/Colossus/man/Likelihood_Ratio_Test.Rd | 4 Colossus-1.5/Colossus/man/Linked_Dose_Formula.Rd | 4 Colossus-1.5/Colossus/man/LogisticRun.Rd | 26 Colossus-1.5/Colossus/man/PoisRun.Rd | 26 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Colossus-1.5/Colossus/vignettes/count_time_tables.Rmd | 36 169 files changed, 6866 insertions(+), 5091 deletions(-)
Title: Functional Utilities for Data Processing
Description: Covers several areas of data processing: batch-splitting, reading and writing of large
data files, data tiling, one-hot encoding and decoding of data tiles, stratified proportional
(random or probabilistic) data sampling, data normalization and thresholding, substring location
and commonalities inside strings and location and tabulation of amino acids, modifications or
associated monoisotopic masses inside modified peptides. The extractor utility implements code from
'Matrix.utils', Varrichio C (2020), <https://cran.r-project.org/package=Matrix.utils>.
Author: Dragos Bandur [aut, cre]
Maintainer: Dragos Bandur <dbandur@sympatico.ca>
Diff between akin versions 0.2.0 dated 2026-04-11 and 0.2.1 dated 2026-04-17
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 1 - NEWS.md | 5 +++++ R/tileD.R | 15 ++++++++------- R/utils.R | 3 +-- R/zzz.R | 6 ------ man/tileData.Rd | 13 +++++++------ 8 files changed, 32 insertions(+), 33 deletions(-)
Title: Infers Novel Immunoglobulin Alleles from Sequencing Data
Description: Infers the V genotype of an individual from immunoglobulin (Ig)
repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes detection of
any novel alleles. This information is then used to correct existing V
allele calls from among the sample sequences.
Citations:
Gadala-Maria, et al (2015) <doi:10.1073/pnas.1417683112>,
Gadala-Maria, et al (2019) <doi:10.3389/fimmu.2019.00129>.
Author: Daniel Gadala-Maria [aut],
Susanna Marquez [aut, cre],
Moriah Cohen [aut],
Ayelet Peres [aut],
Jason Vander Heiden [aut],
Gur Yaari [aut],
Steven Kleinstein [aut, cph]
Maintainer: Susanna Marquez <susanna.marquez@yale.edu>
Diff between tigger versions 1.1.2 dated 2026-01-10 and 1.1.3 dated 2026-04-17
DESCRIPTION | 15 +++++++++------ MD5 | 26 +++++++++++++------------- NEWS.md | 18 +++++++++++++++++- R/bayesian.R | 4 ++-- R/functions.R | 40 ++++++++++++++++++++++++++-------------- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 ++-- inst/doc/Tigger-Vignette.R | 4 ++-- inst/doc/Tigger-Vignette.Rmd | 7 +++---- inst/doc/Tigger-Vignette.pdf |binary man/reassignAlleles.Rd | 2 +- man/subsampleDb.Rd | 1 + vignettes/Tigger-Vignette.Rmd | 7 +++---- 14 files changed, 79 insertions(+), 49 deletions(-)
Title: Enhancing the 'parallel' Package
Description: Utility functions that enhance the 'parallel' package and support the built-in parallel backends of the 'future' package. For example, availableCores() gives the number of CPU cores available to your R process as given by the operating system, 'cgroups' and Linux containers, R options, and environment variables, including those set by job schedulers on high-performance compute clusters. If none is set, it will fall back to parallel::detectCores(). Another example is makeClusterPSOCK(), which is backward compatible with parallel::makePSOCKcluster() while doing a better job in setting up remote cluster workers without the need for configuring the firewall to do port-forwarding to your local computer.
Author: Henrik Bengtsson [aut, cre, cph] ,
Mike Cheng [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between parallelly versions 1.46.1 dated 2026-01-08 and 1.47.0 dated 2026-04-17
DESCRIPTION | 6 - MD5 | 112 ++++++++++++------------- NEWS.md | 63 +++++++++++--- R/010.cli.R | 2 R/RichSOCKcluster.R | 3 R/availableCores.R | 114 +++++++++++++++++++++----- R/availableWorkers.R | 29 ++++-- R/cgroups.R | 94 ++++++++++++++++++++- R/isForkedChild.R | 5 - R/isNodeAlive.R | 4 R/killNode.R | 14 +-- R/makeClusterMPI.R | 2 R/makeClusterPSOCK.R | 22 ++--- R/supportsMulticore.R | 16 +++ R/utils,cluster.R | 2 R/utils,pid.R | 2 R/utils.R | 2 build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/parallelly-01-intro.html | 10 +- inst/doc/parallelly-01-intro.md | 10 +- inst/doc/parallelly-10-local-workers.html | 4 inst/doc/parallelly-10-local-workers.md | 4 inst/doc/parallelly-12-remote-workers.html | 14 +-- inst/doc/parallelly-12-remote-workers.md | 14 +-- inst/doc/parallelly-15-cloud-workers.html | 2 inst/doc/parallelly-15-cloud-workers.md | 2 inst/doc/parallelly-17-hpc-workers.html | 4 inst/doc/parallelly-17-hpc-workers.md | 4 inst/doc/parallelly-20-limit-workers.html | 16 +-- inst/doc/parallelly-20-limit-workers.md | 16 +-- inst/doc/parallelly-21-container-workers.html | 2 inst/doc/parallelly-21-container-workers.md | 2 inst/doc/parallelly-22-wine-workers.html | 68 +++++++++++++-- inst/doc/parallelly-22-wine-workers.md | 101 +++++++++++++++++++++-- inst/test-data/mixed-cgroups/piavpn.R | 4 inst/testme/test-availableCores.R | 46 ++++++++++ inst/testme/test-availableWorkers.R | 30 +++++- inst/testme/test-cgroups.R | 33 +++++++ inst/testme/test-cli.R | 18 ++-- inst/testme/test-freeCores.R | 46 ++++++++++ inst/testme/test-isConnectionValid.R | 2 inst/testme/test-utils,cluster.R | 50 +++++++++++ inst/testme/test-utils.R | 76 +++++++++++++++++ man/availableCores.Rd | 89 ++++++++++++++++---- man/availableWorkers.Rd | 6 - man/killNode.Rd | 8 - man/makeClusterPSOCK.Rd | 6 - man/supportsMulticore.Rd | 16 +++ vignettes/parallelly-01-intro.md | 10 +- vignettes/parallelly-10-local-workers.md | 4 vignettes/parallelly-12-remote-workers.md | 14 +-- vignettes/parallelly-15-cloud-workers.md | 2 vignettes/parallelly-17-hpc-workers.md | 4 vignettes/parallelly-20-limit-workers.md | 16 +-- vignettes/parallelly-21-container-workers.md | 2 vignettes/parallelly-22-wine-workers.md | 101 +++++++++++++++++++++-- 57 files changed, 1073 insertions(+), 276 deletions(-)
Title: Another Approach to Package Installation
Description: The goal of 'pak' is to make package installation faster and
more reliable. In particular, it performs all HTTP operations in
parallel, so metadata resolution and package downloads are fast.
Metadata and package files are cached on the local disk as well. 'pak'
has a dependency solver, so it finds version conflicts before
performing the installation. This version of 'pak' supports CRAN,
'Bioconductor' and 'GitHub' packages as well.
Author: Gabor Csardi [aut, cre],
Jim Hester [aut],
Posit Software, PBC [cph, fnd] ,
Winston Chang [ctb] ,
Ascent Digital Services [cph, fnd] ,
Hadley Wickham [ctb, cph] ,
Jeroen Ooms [ctb] ,
Maelle Salmon [ctb] ,
Duncan Temple Lang [ctb] ,
Lloyd Hilaiel [cph [...truncated...]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pak versions 0.9.3-1 dated 2026-04-15 and 0.9.4 dated 2026-04-17
DESCRIPTION | 6 MD5 |only NEWS.md | 6 R/repo.R | 2 R/subprocess.R | 2 man/repo_add.Rd | 2 src/library/cli/DESCRIPTION | 16 src/library/cli/LICENSE | 2 src/library/cli/NEWS.md | 11 src/library/cli/R/aaa-utils.R | 6 src/library/cli/R/aab-rstudio-detect.R | 63 src/library/cli/R/ansi-hyperlink.R | 99 src/library/cli/R/ansi-palette.R | 12 src/library/cli/R/ansi-utils.R | 7 src/library/cli/R/ansi.R | 103 - src/library/cli/R/ansiex.R | 180 + src/library/cli/R/app.R | 16 src/library/cli/R/assertions.R | 8 src/library/cli/R/box-styles.R | 14 src/library/cli/R/boxes.R | 41 src/library/cli/R/bullets.R | 9 src/library/cli/R/cat.R | 11 src/library/cli/R/cli-errors.R | 18 src/library/cli/R/cli.R | 251 +- src/library/cli/R/cliapp-docs.R | 5 src/library/cli/R/cliapp.R | 139 - src/library/cli/R/containers.R | 44 src/library/cli/R/debug.R | 20 src/library/cli/R/defer.R | 345 +-- src/library/cli/R/diff.R | 23 src/library/cli/R/docs.R | 1 src/library/cli/R/enc-utils.R | 1 src/library/cli/R/errors.R | 316 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src/library/ps/R/memoize.R | 7 src/library/ps/R/memory.R | 76 src/library/ps/R/os.R | 17 src/library/ps/R/package.R | 7 src/library/ps/R/posix.R | 6 src/library/ps/R/ps.R | 193 + src/library/ps/R/rematch2.R | 14 src/library/ps/R/string.R |only src/library/ps/R/system.R | 63 src/library/ps/R/testthat-reporter.R | 149 + src/library/ps/R/utils.R | 126 - src/library/ps/inst/tools/error-codes.R | 23 src/library/ps/inst/tools/winver.R | 21 src/library/ps/src/cleancall.c | 6 src/library/ps/src/install.libs.R | 9 225 files changed, 5443 insertions(+), 3419 deletions(-)
Title: Optimized Automated Gaussian Mixture Assessment
Description: Necessary functions for optimized automated evaluation of the number and parameters of Gaussian mixtures in one-dimensional data. Various methods are available for parameter estimation and for determining the number of modes in the mixture. A detailed description of the methods ca ben found in Lotsch, J., Malkusch, S. and A. Ultsch. (2022) <doi:10.1016/j.imu.2022.101113>.
Author: Jorn Lotsch [aut, cre] ,
Sebastian Malkusch [aut]
Maintainer: Jorn Lotsch <j.lotsch@em.uni-frankfurt.de>
Diff between opGMMassessment versions 0.4 dated 2024-04-14 and 0.4.1 dated 2026-04-17
opGMMassessment-0.4.1/opGMMassessment/DESCRIPTION | 28 ++++++---- opGMMassessment-0.4.1/opGMMassessment/MD5 | 9 +-- opGMMassessment-0.4.1/opGMMassessment/R/opGMMassessment.R | 29 ++++++++--- opGMMassessment-0.4.1/opGMMassessment/inst/CITATION | 7 +- opGMMassessment-0.4.1/opGMMassessment/man/opGMMassessment.Rd | 8 +-- opGMMassessment-0.4/opGMMassessment/README.md |only 6 files changed, 51 insertions(+), 30 deletions(-)
More information about opGMMassessment at CRAN
Permanent link
Title: Read, Write and Edit 'xlsx' Files
Description: Simplifies the creation of 'xlsx' files by
providing a high level interface to writing, styling and editing
worksheets.
Author: Jordan Mark Barbone [aut] ,
Jan Marvin Garbuszus [aut, cre],
Olivier Roy [ctb],
openxlsx authors [cph] ,
Arseny Kapoulkine [ctb, cph]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>
Diff between openxlsx2 versions 1.25 dated 2026-03-07 and 1.26 dated 2026-04-17
DESCRIPTION | 6 MD5 | 70 +-- NAMESPACE | 3 NEWS.md | 15 R/baseXML.R | 584 ++------------------------ R/class-workbook-wrappers.R | 31 + R/class-workbook.R | 230 ++++++++-- R/illegal-characters.R | 10 R/openxlsx2-package.R | 5 R/pivot_table.R | 11 R/pugixml.R | 18 R/utils.R | 321 ++++++++++++++ R/wb_load.R | 16 R/wb_styles.R | 33 + R/write.R | 27 - R/write_xlsx.R | 17 build/vignette.rds |binary inst/doc/conditional-formatting.html | 104 +--- inst/doc/openxlsx2_charts_manual.html | 10 inst/doc/openxlsx2_formulas_manual.html | 4 inst/doc/openxlsx2_style_manual.html | 8 man/as.character.pugi_xml.Rd |only man/wbWorkbook.Rd | 39 + man/wb_add_chart_xml.Rd | 6 man/wb_add_data_table.Rd | 3 man/wb_add_encharter.Rd |only tests/testthat/helper.R | 6 tests/testthat/test-class-hyperlink.R | 14 tests/testthat/test-class-workbook-wrappers.R | 17 tests/testthat/test-class-workbook.R | 78 +++ tests/testthat/test-formulas.R | 26 - tests/testthat/test-loading_workbook_tables.R | 2 tests/testthat/test-pugixml.R | 3 tests/testthat/test-save.R | 12 tests/testthat/test-tables.R | 33 + tests/testthat/test-wb_styles.R | 24 - tests/testthat/test-write.R | 228 +++++++++- 37 files changed, 1272 insertions(+), 742 deletions(-)
Title: 'Opal' Data Repository Client and 'DataSHIELD' Utils
Description: Data integration Web application for biobanks by 'OBiBa'. 'Opal' is
the core database application for biobanks. Participant data, once
collected from any data source, must be integrated and stored in a central
data repository under a uniform model. 'Opal' is such a central repository.
It can import, process, validate, query, analyze, report, and export data.
'Opal' is typically used in a research center to analyze the data acquired at
assessment centres. Its ultimate purpose is to achieve seamless
data-sharing among biobanks. This 'Opal' client allows to interact with 'Opal'
web services and to perform operations on the R server side. 'DataSHIELD'
administration tools are also provided.
Author: Yannick Marcon [aut, cre] ,
Amadou Gaye [ctb] ,
OBiBa group [cph]
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>
Diff between opalr versions 3.5.2 dated 2025-12-09 and 3.6.0 dated 2026-04-17
DESCRIPTION | 6 ++-- MD5 | 52 +++++++++++++++++++++-------------------- NAMESPACE | 2 + R/opal.file.R | 52 +++++++++++++++++++++++++++++++++++++---- R/opal.task.R | 28 +++++++++++++++++++--- build/vignette.rds |binary inst/doc/datashield-admin.html | 4 +-- inst/doc/opal-files.html | 4 +-- inst/doc/opal-projects.html | 4 +-- inst/doc/opal-rsession.html | 4 +-- man/opal.file.Rd | 1 man/opal.file_cp.Rd | 1 man/opal.file_download.Rd | 8 ++++-- man/opal.file_info.Rd |only man/opal.file_ls.Rd | 1 man/opal.file_mkdir.Rd | 1 man/opal.file_mkdir_tmp.Rd | 1 man/opal.file_mv.Rd | 1 man/opal.file_read.Rd | 1 man/opal.file_rm.Rd | 1 man/opal.file_unzip.Rd | 1 man/opal.file_upload.Rd | 1 man/opal.file_write.Rd | 1 man/opal.task.Rd | 1 man/opal.task_cancel.Rd | 1 man/opal.task_delete.Rd |only man/opal.task_wait.Rd | 6 +++- man/opal.tasks.Rd | 1 28 files changed, 136 insertions(+), 48 deletions(-)
Title: Interpreted String Literals
Description: An implementation of interpreted string literals, inspired by
Python's Literal String Interpolation
<https://www.python.org/dev/peps/pep-0498/> and Docstrings
<https://www.python.org/dev/peps/pep-0257/> and Julia's Triple-Quoted
String Literals
<https://docs.julialang.org/en/v1.3/manual/strings/#Triple-Quoted-String-Literals-1>.
Author: Jim Hester [aut] ,
Jennifer Bryan [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Jennifer Bryan <jenny@posit.co>
Diff between glue versions 1.8.0 dated 2024-09-30 and 1.8.1 dated 2026-04-17
glue-1.8.0/glue/tests/testthat/test-collapse.R |only glue-1.8.0/glue/tests/testthat/test-trim.R |only glue-1.8.1/glue/DESCRIPTION | 27 - glue-1.8.1/glue/LICENSE | 2 glue-1.8.1/glue/MD5 | 84 +-- glue-1.8.1/glue/NAMESPACE | 8 glue-1.8.1/glue/NEWS.md | 6 glue-1.8.1/glue/R/color.R | 36 + glue-1.8.1/glue/R/glue-package.R | 3 glue-1.8.1/glue/R/glue.R | 63 ++ glue-1.8.1/glue/R/import-standalone-s3-register.R |only glue-1.8.1/glue/R/knitr.R | 18 glue-1.8.1/glue/R/sql.R | 60 +- glue-1.8.1/glue/R/utils.R | 69 +-- glue-1.8.1/glue/R/vctrs.R | 8 glue-1.8.1/glue/R/zzz.R | 27 + glue-1.8.1/glue/README.md | 14 glue-1.8.1/glue/build/vignette.rds |binary glue-1.8.1/glue/inst/doc/engines.Rmd | 4 glue-1.8.1/glue/inst/doc/engines.html | 9 glue-1.8.1/glue/inst/doc/glue.R | 6 glue-1.8.1/glue/inst/doc/glue.Rmd | 4 glue-1.8.1/glue/inst/doc/glue.html | 13 glue-1.8.1/glue/inst/doc/transformers.R | 28 - glue-1.8.1/glue/inst/doc/transformers.html | 5 glue-1.8.1/glue/inst/doc/wrappers.R | 4 glue-1.8.1/glue/inst/doc/wrappers.html | 5 glue-1.8.1/glue/man/figures/logo.png |binary glue-1.8.1/glue/man/glue-package.Rd | 2 glue-1.8.1/glue/man/glue.Rd | 12 glue-1.8.1/glue/man/glue_col.Rd | 2 glue-1.8.1/glue/man/glue_sql.Rd | 2 glue-1.8.1/glue/man/trim.Rd | 2 glue-1.8.1/glue/tests/testthat/_snaps/glue.md | 67 +++ glue-1.8.1/glue/tests/testthat/_snaps/r4.5 |only glue-1.8.1/glue/tests/testthat/_snaps/safe.md |only glue-1.8.1/glue/tests/testthat/_snaps/sql.md | 20 glue-1.8.1/glue/tests/testthat/test-color.R | 32 - glue-1.8.1/glue/tests/testthat/test-glue.R | 490 +++++++++++++++++++--- glue-1.8.1/glue/tests/testthat/test-knitr.R |only glue-1.8.1/glue/tests/testthat/test-quoting.R | 24 - glue-1.8.1/glue/tests/testthat/test-safe.R | 4 glue-1.8.1/glue/tests/testthat/test-sql.R | 107 +++- glue-1.8.1/glue/tests/testthat/test-vctrs.R | 1 glue-1.8.1/glue/vignettes/engines.Rmd | 4 glue-1.8.1/glue/vignettes/glue.Rmd | 4 46 files changed, 952 insertions(+), 324 deletions(-)
Title: Scientific Journal and Sci-Fi Themed Color Palettes for
'ggplot2'
Description: A collection of 'ggplot2' color palettes inspired by
plots in scientific journals, data visualization libraries,
science fiction movies, and TV shows.
Author: Nan Xiao [aut, cre, cph] ,
Joshua Cook [ctb],
Clara Jegousse [ctb],
Hui Chen [ctb],
Miaozhu Li [ctb],
iTerm2-Color-Schemes contributors [ctb, cph] ,
Winston Chang [ctb, cph]
Maintainer: Nan Xiao <me@nanx.me>
Diff between ggsci versions 4.3.0 dated 2026-04-09 and 5.0.0 dated 2026-04-17
DESCRIPTION | 6 +-- MD5 | 29 +++++++++------ NAMESPACE | 5 ++ NEWS.md | 13 +++++++ R/discrete-bmj.R | 4 +- R/discrete-gephi.R |only R/palettes.R | 21 +++++++++++ README.md | 60 +++++++++++++++++--------------- inst/doc/ggsci.R | 6 +++ inst/doc/ggsci.Rmd | 23 +++++++++++- inst/doc/ggsci.html | 65 ++++++++++++++++++++++++----------- man/figures/README-ggsci-gephi-1.png |only man/gephi_palettes.Rd |only man/pal_bmj.Rd | 2 - man/pal_gephi.Rd |only man/scale_bmj.Rd | 2 - man/scale_gephi.Rd |only vignettes/ggsci.Rmd | 23 +++++++++++- 18 files changed, 190 insertions(+), 69 deletions(-)
Title: Visualization of 'exametrika' Output Using 'ggplot2'
Description: Provides 'ggplot2'-based visualization functions for output objects
from the 'exametrika' package, which implements test data engineering methods
described in Shojima (2022, ISBN:978-981-16-9547-1). Supports a wide range of
psychometric models including Item Response Theory, Latent Class Analysis,
Latent Rank Analysis, Biclustering (binary, ordinal, and nominal),
Bayesian Network Models, and related network models. All plot functions
return 'ggplot2' objects that can be further customized by the user.
Author: Koji Kosugi [aut, cre] ,
Daichi Kamimura [aut]
Maintainer: Koji Kosugi <kosugitti@gmail.com>
Diff between ggExametrika versions 1.0.0 dated 2026-03-29 and 1.1.0 dated 2026-04-17
DESCRIPTION | 6 - MD5 | 44 +++++++------ NAMESPACE | 2 NEWS.md | 34 ++++++++++ R/Biclustering.R | 8 +- R/IRPtoCMPRMP.R | 29 ++++---- R/LRAordinal.R | 2 R/PolyBiclustering.R | 13 ++- R/ScoreField.R | 9 +- R/arraytoLDPSR.R | 5 - R/plotDistractor_gg.R |only R/zzz.R | 4 - inst |only man/plotArray_gg.Rd | 1 man/plotDistractor_gg.Rd |only man/plotFCRP_gg.Rd | 9 +- man/plotFRP_gg.Rd | 4 - man/plotScoreField_gg.Rd | 5 - man/plotScoreFreq_gg.Rd | 2 man/plotTRP_gg.Rd | 3 tests/testthat/Rplots.pdf |binary tests/testthat/helper-setup.R | 37 +++++++++++ tests/testthat/test-PolyBiclustering-plots.R | 88 ++++++++++++++++++++++++++- tests/testthat/test-distractor-plots.R |only tools/build_pkg.R | 2 25 files changed, 241 insertions(+), 66 deletions(-)