Title: Parallel GLM
Description: Provides a parallel estimation method for generalized linear
models without compiling with a multithreaded LAPACK or BLAS.
Author: Benjamin Christoffersen [aut] ,
Anthony Williams [cph],
Boost developers [cph],
Tom Palmer [aut, cre]
Maintainer: Tom Palmer <remlapmot@hotmail.com>
This is a re-admission after prior archival of version 0.1.7 dated 2021-10-14
Diff between parglm versions 0.1.7 dated 2021-10-14 and 0.1.8 dated 2026-04-21
.aspell |only DESCRIPTION | 51 ++++++++++++++++++++++++-------------------------- MD5 | 22 +++++++++++---------- NEWS.md | 9 +++++++- R/parglm.R | 21 +++++--------------- README.md | 15 ++++++-------- build/vignette.rds |binary inst/WORDLIST |only man/parglm.Rd | 48 ++++++++++++++++++++++++++++++++--------------- man/parglm.control.Rd | 20 ++++++++++--------- src/LAPACK_wrappers.h | 2 - src/Makevars | 1 src/Makevars.win |only src/thread_pool.h | 4 +-- 14 files changed, 106 insertions(+), 87 deletions(-)
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in Migueles and colleagues (JMPB 2019), and van Hees and colleagues (JApplPhysiol 2014; PLoSONE 2015). The package has been developed and tested for binary data from 'GENEActiv' <https://activinsights.com/>, binary (.gt3x) and .csv-export data from 'Actigraph' <https://ametris.com/> devices, and binary (.cwa) and .csv-export data from 'Axivity' <https://axivity.com>. These devices are currently widely used in research on human daily physical activity. Further, the package can handle accelerometer data file from any other sensor brand providing that the data is stored in csv format. Also the package allows for external function embedding.
Author: Vincent T van Hees [aut, cre],
Jairo H Migueles [aut] ,
Severine Sabia [ctb],
Matthew R Patterson [ctb],
Zhou Fang [ctb],
Joe Heywood [ctb],
Joan Capdevila Pujol [ctb],
Lena Kushleyeva [ctb],
Mathilde Chen [ctb],
Manasa Yerramalla [ctb],
Patrick Bos [...truncated...]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>
Diff between GGIR versions 3.3-4 dated 2026-01-27 and 3.3-6 dated 2026-04-21
GGIR-3.3-4/GGIR/tests/testthat/test_chainof5parts.R |only GGIR-3.3-6/GGIR/DESCRIPTION | 12 GGIR-3.3-6/GGIR/MD5 | 68 +-- GGIR-3.3-6/GGIR/NEWS.md | 24 + GGIR-3.3-6/GGIR/R/check_params.R | 5 GGIR-3.3-6/GGIR/R/detectEventBouts.R | 103 ++-- GGIR-3.3-6/GGIR/R/g.analyse.avday.R | 2 GGIR-3.3-6/GGIR/R/g.impute.R | 354 ++++++++-------- GGIR-3.3-6/GGIR/R/g.part6.R | 4 GGIR-3.3-6/GGIR/R/g.report.part4.R | 12 GGIR-3.3-6/GGIR/R/g.report.part5.R | 7 GGIR-3.3-6/GGIR/R/g.report.part5_dictionary.R | 9 GGIR-3.3-6/GGIR/R/load_params.R | 2 GGIR-3.3-6/GGIR/build/vignette.rds |binary GGIR-3.3-6/GGIR/inst/doc/ExternalFunction.Rmd | 2 GGIR-3.3-6/GGIR/inst/doc/ExternalFunction.html | 2 GGIR-3.3-6/GGIR/inst/doc/GGIRParameters.Rmd | 3 GGIR-3.3-6/GGIR/inst/doc/GGIRParameters.html | 201 ++++----- GGIR-3.3-6/GGIR/inst/doc/GGIRoutput.Rmd | 6 GGIR-3.3-6/GGIR/inst/doc/GGIRoutput.html | 15 GGIR-3.3-6/GGIR/inst/doc/StepCadenceAnalysis.Rmd | 6 GGIR-3.3-6/GGIR/inst/doc/StepCadenceAnalysis.html | 11 GGIR-3.3-6/GGIR/inst/doc/readmyacccsv.Rmd | 2 GGIR-3.3-6/GGIR/inst/doc/readmyacccsv.html | 8 GGIR-3.3-6/GGIR/man/GGIR-package.Rd | 4 GGIR-3.3-6/GGIR/man/GGIR.Rd | 15 GGIR-3.3-6/GGIR/tests/testthat/test_StudyDatesFile.R | 65 ++ GGIR-3.3-6/GGIR/tests/testthat/test_detectEventBouts.R | 19 GGIR-3.3-6/GGIR/tests/testthat/test_integration.R |only GGIR-3.3-6/GGIR/tests/testthat/test_load_check_params.R | 2 GGIR-3.3-6/GGIR/tests/testthat/test_part6.R | 2 GGIR-3.3-6/GGIR/vignettes/ExternalFunction.Rmd | 2 GGIR-3.3-6/GGIR/vignettes/GGIRParameters.Rmd | 3 GGIR-3.3-6/GGIR/vignettes/GGIRoutput.Rmd | 6 GGIR-3.3-6/GGIR/vignettes/StepCadenceAnalysis.Rmd | 6 GGIR-3.3-6/GGIR/vignettes/readmyacccsv.Rmd | 2 36 files changed, 557 insertions(+), 427 deletions(-)
Title: Statistical Tools for the Analysis of Multi Environment
Agronomic Trials
Description: Provides tools for the analysis of multi-environment agronomic
trials, with a specific focus on plant breeding experiments.
Implements the Additive Main effects and Multiplicative Interaction
(AMMI) model (Gauch, 1992, ISBN:9780444892409) and the Site Regression
(SREG) model (Cornelius, 1996, <doi:10.1201/9780367802226>). To ensure
reliable results even with outliers or missing data, it includes robust
versions of AMMI (Rodrigues et al., 2016,
<doi:10.1093/bioinformatics/btv533>) and SREG (Angelini et al., 2022,
<doi:10.1080/15427528.2022.2051217>). Furthermore, the package offers
advanced imputation techniques for multi-environment data, covering
classical methodologies (Arciniegas-Alarcón et al., 2014,
<doi:10.2478/bile-2014-0006>) and recently published imputation methods
for MET data (Angelini et al., 2024, <doi:10.1007/s10681-024-03344-z>).
Author: Julia Angelini [aut, cre] ,
Marcos Prunello [aut] ,
Gerardo Cervigni [aut]
Maintainer: Julia Angelini <jangelini_93@hotmail.com>
Diff between geneticae versions 1.0.0 dated 2026-04-16 and 1.0.1 dated 2026-04-21
DESCRIPTION | 30 +++++------ MD5 | 52 +++++++++---------- NEWS.md | 10 ++- R/EM_AMMI.R | 2 R/EM_GGE.R | 10 --- R/Eigenvector.R | 47 +++++------------ R/W_GabrielEigen.R | 65 +++++++---------------- R/impute.R | 15 +++-- R/rAMMIModel.R | 74 +++++++++++++++++++++++---- R/rAMMIPlot.R | 61 ++++++++++++++++------ R/rSREGModel.R | 3 - R/rSREGPlot.R | 6 +- README.md | 55 ++++++++++++-------- inst/WORDLIST | 84 ++----------------------------- inst/doc/a-tutorial.Rmd | 69 +++++++++++-------------- inst/doc/a-tutorial.html | 48 ++++++++--------- inst/doc/b-shiny.html | 4 - man/EM.AMMI.Rd | 2 man/WGabriel.Rd | 4 - man/figures/README-unnamed-chunk-4-1.png |binary man/imputation.Rd | 15 +++-- man/rAMMIModel.Rd | 73 +++++++++++++++++++++++--- man/rAMMIPlot.Rd | 62 ++++++++++++++++------ man/rSREGModel.Rd | 2 man/rSREGPlot.Rd | 6 +- tests/spelling.R | 2 vignettes/a-tutorial.Rmd | 69 +++++++++++-------------- 27 files changed, 463 insertions(+), 407 deletions(-)
Title: Data and Code for Empirical Research in Accounting
Description: Handy functions and data to support the course book 'Empirical Research in Accounting: Tools and Methods' (1st ed.). Chapman and Hall/CRC. <doi:10.1201/9781003456230> and <https://iangow.github.io/far_book/>.
Author: Ian Gow [aut, cre]
Maintainer: Ian Gow <iandgow@gmail.com>
This is a re-admission after prior archival of version 1.0.0 dated 2025-11-17
Diff between farr versions 1.0.0 dated 2025-11-17 and 1.0.1 dated 2026-04-21
DESCRIPTION | 6 ++--- MD5 | 26 ++++++++++++----------- NAMESPACE | 1 NEWS.md | 4 ++- R/duckdb_to_parquet.R |only R/get_ff_ind.R | 4 +-- R/get_me_breakpoints.R | 2 + R/get_size_rets_monthly.R | 8 +++---- build/partial.rdb |binary inst/WORDLIST | 35 +++++++++++++++++++++++++++---- man/duckdb_to_parquet.Rd |only man/get_ff_ind.Rd | 4 +-- man/get_me_breakpoints.Rd | 2 + tests/testthat/test-get_ff_ind.R | 2 + tests/testthat/test-get_me_breakpoints.R | 6 +++-- 15 files changed, 70 insertions(+), 30 deletions(-)
More information about rjd3production at CRAN
Permanent link
Title: Prompt Large Language Models and Enhance Their Functionality
Description: Easily construct prompts and associated logic for interacting with
large language models (LLMs).
'tidyprompt' introduces the concept of prompt wraps, which are building
blocks that you can use to quickly turn a simple prompt into a complex
one. Prompt wraps do not just modify the prompt text, but also add
extraction and validation functions that will be applied to the response
of the LLM. This ensures that the user gets the desired output.
'tidyprompt' can add various features to prompts and their evaluation
by LLMs, such as structured output, automatic feedback, retries, reasoning
modes, autonomous R function calling, and R code generation and evaluation.
It is designed to be compatible with any LLM provider that offers
chat completion.
Author: Luka Koning [aut, cre, cph],
Tjark Van de Merwe [aut, cph],
Kennispunt Twente [fnd]
Maintainer: Luka Koning <koningluka@gmail.com>
Diff between tidyprompt versions 0.3.0 dated 2025-11-30 and 0.4.0 dated 2026-04-21
DESCRIPTION | 18 MD5 | 151 ++- NAMESPACE | 2 NEWS.md | 248 +++-- R/answer_as_dataframe.R |only R/answer_as_json.R | 14 R/answer_as_numeric.R |only R/answer_using_r.R | 19 R/answer_using_sql.R | 5 R/answer_using_tools.R | 247 ++++- R/chat_history.R | 10 R/helper_ellmer_json_compatibility.R | 193 +++- R/helper_ellmer_tool_compatibility.R | 254 ++++-- R/internal_extraction.R | 2 R/internal_request_llm_provider.R | 58 + R/internal_test_helpers.R | 2 R/llm_break.R | 2 R/llm_provider.R | 68 + R/llm_providers.R | 761 ++++++++++++++++-- R/misc_add_image.R | 76 - R/misc_llm_verify.R | 2 R/misc_quit_if.R | 2 R/persistent_chat.R | 6 R/send_prompt.R | 128 ++- R/tidyprompt.R | 12 README.md | 21 inst/doc/getting_started.Rmd | 799 +++++++++---------- inst/doc/getting_started.html | 16 inst/examples/answer_as_dataframe.R |only inst/examples/answer_as_numeric.R |only inst/examples/send_prompt.R | 4 inst/examples/skim_with_labels_and_levels.R | 16 man/add_image.Rd | 9 man/add_text.Rd | 2 man/answer_as_boolean.Rd | 4 man/answer_as_category.Rd | 4 man/answer_as_dataframe.Rd |only man/answer_as_integer.Rd | 4 man/answer_as_json.Rd | 4 man/answer_as_list.Rd | 4 man/answer_as_multi_category.Rd | 4 man/answer_as_named_list.Rd | 4 man/answer_as_numeric.Rd |only man/answer_as_regex_match.Rd | 4 man/answer_as_text.Rd | 4 man/answer_by_chain_of_thought.Rd | 2 man/answer_by_react.Rd | 2 man/answer_using_r.Rd | 2 man/answer_using_sql.Rd | 2 man/answer_using_tools.Rd | 16 man/chat_history.Rd | 2 man/llm_provider_ellmer.Rd | 11 man/prompt_wrap.Rd | 2 man/quit_if.Rd | 2 man/send_prompt.Rd | 28 man/set_system_prompt.Rd | 2 man/skim_with_labels_and_levels.Rd | 16 man/tidyprompt-package.Rd | 2 man/tools_add_docs.Rd | 4 man/tools_get_docs.Rd | 422 +++++----- tests/testthat/helper-ellmer.R | 69 + tests/testthat/test-answer-as-json.R | 66 + tests/testthat/test-answer_as_dataframe.R |only tests/testthat/test-answer_as_numeric.R |only tests/testthat/test-answer_using_tools.R | 385 +++++++++ tests/testthat/test-chat_history.R | 13 tests/testthat/test-ellmer_add_image.R | 112 ++ tests/testthat/test-ellmer_builtin_tool.R |only tests/testthat/test-ellmer_clone_semantics.R |only tests/testthat/test-ellmer_json_compatibility.R | 46 + tests/testthat/test-ellmer_param_warning.R |only tests/testthat/test-ellmer_streaming.R | 1 tests/testthat/test-ellmer_streaming_harden.R |only tests/testthat/test-ellmer_structured_native.R |only tests/testthat/test-ellmer_tool_compatibility.R | 151 +++ tests/testthat/test-ellmer_tool_optional_args.R |only tests/testthat/test-ellmer_tool_scope.R |only tests/testthat/test-ellmer_turn_construction.R |only tests/testthat/test-ellmer_type_from_schema.R |only tests/testthat/test-general.R | 3 tests/testthat/test-llm_provider.R | 140 +++ tests/testthat/test-llm_provider_ellmer_multimodal.R | 103 ++ tests/testthat/test-persistent_chat_ellmer.R |only tests/testthat/test-request_llm_provider.R |only tests/testthat/test-send_prompt.R | 545 ++++++++++++ vignettes/getting_started.Rmd | 799 +++++++++---------- 86 files changed, 4512 insertions(+), 1619 deletions(-)
Title: Hierarchical and Variation Partitioning for Canonical Analysis
Description: This function conducts variation partitioning and hierarchical partitioning to calculate the unique, shared (referred as to "common") and individual contributions of each predictor (or matrix) towards explained variation (R-square and adjusted R-square) on canonical analysis (RDA,CCA and db-RDA), applying the algorithm of Lai J.,Zou Y., Zhang J.,Peres-Neto P.(2022) Generalizing hierarchical and variation partitioning in multiple regression and canonical analyses using the rdacca.hp R package.Methods in Ecology and Evolution,13: 782-788 <DOI:10.1111/2041-210X.13800>.
Author: Jiangshan Lai [aut, cre] ,
Kim Nimon [aut],
Yao Liu [aut],
Pedro Peres-Neto [aut]
Maintainer: Jiangshan Lai <lai@njfu.edu.cn>
Diff between rdacca.hp versions 1.1-2 dated 2026-04-05 and 1.1-3 dated 2026-04-21
DESCRIPTION | 9 +++++---- MD5 | 6 +++--- R/rdacca.hp.r | 21 +++++++++++++++++---- man/rdacca.hp.Rd | 3 +++ 4 files changed, 28 insertions(+), 11 deletions(-)
More information about nordstatExtras at CRAN
Permanent link
Title: Theory-Driven Item Response Theory (IRT) Models
Description: IRT-M is a semi-supervised approach based on Bayesian Item Response Theory
that produces theoretically identified underlying dimensions from input data
and a constraints matrix. The methodology is fully described in 'Morucci et al. (2024),
"Measurement That Matches Theory: Theory-Driven Identification in Item Response Theory Models"'.
Details are available at <https://www.cambridge.org/core/journals/american-political-science-review/article/measurement-that-matches-theory-theorydriven-identification-in-item-response-theory-models/395DA1DFE3DCD7B866DC053D7554A30B>.
Author: Marco Morucci [aut],
Margaret Foster [aut] ,
David Siegel [aut, cre]
Maintainer: David Siegel <david.siegel@duke.edu>
Diff between IRTM versions 0.0.1.1 dated 2025-04-19 and 0.0.1.2 dated 2026-04-21
DESCRIPTION | 17 - MD5 | 20 - NEWS.md |only R/constrained_IRT.R | 51 ++- R/pair_gen_anchors.R | 16 - inst/doc/introduction_synth.R | 32 +- inst/doc/introduction_synth.Rmd | 45 +-- inst/doc/introduction_synth.html | 549 +++++++++++++++++++-------------------- tests/testthat.R | 80 ----- tests/testthat/test-irm.R | 27 + vignettes/Basic_continuous_use.R |only vignettes/introduction_synth.Rmd | 45 +-- 12 files changed, 417 insertions(+), 465 deletions(-)
Title: A S3 Class for Vectors of 64bit Integers
Description: Package 'bit64' provides serializable S3 atomic 64bit (signed) integers.
These are useful for handling database keys and exact counting in +-2^63.
WARNING: do not use them as replacement for 32bit integers, integer64 are not
supported for subscripting by R-core and they have different semantics when
combined with double, e.g. integer64 + double => integer64.
Class integer64 can be used in vectors, matrices, arrays and data.frames.
Methods are available for coercion from and to logicals, integers, doubles,
characters and factors as well as many elementwise and summary functions.
Many fast algorithmic operations such as 'match' and 'order' support inter-
active data exploration and manipulation and optionally leverage caching.
Author: Michael Chirico [aut, cre],
Jens Oehlschlaegel [aut],
Leonardo Silvestri [ctb],
Ofek Shilon [ctb],
Christian Ullerich [ctb]
Maintainer: Michael Chirico <michaelchirico4@gmail.com>
Diff between bit64 versions 4.6.0-1 dated 2025-01-16 and 4.8.0 dated 2026-04-21
bit64-4.6.0-1/bit64/NEWS |only bit64-4.6.0-1/bit64/inst |only bit64-4.6.0-1/bit64/man/table.integer64.Rd |only bit64-4.6.0-1/bit64/man/xor.integer64.Rd |only bit64-4.8.0/bit64/DESCRIPTION | 31 bit64-4.8.0/bit64/MD5 | 128 bit64-4.8.0/bit64/NAMESPACE | 173 bit64-4.8.0/bit64/NEWS.md |only bit64-4.8.0/bit64/R/bit64-package.R | 135 bit64-4.8.0/bit64/R/cache.R | 379 - bit64-4.8.0/bit64/R/data.R | 4 bit64-4.8.0/bit64/R/hash64.R | 214 bit64-4.8.0/bit64/R/highlevel64.R | 3963 +++++++++--------- bit64-4.8.0/bit64/R/integer64.R | 2152 ++++----- bit64-4.8.0/bit64/R/matrix64.R | 144 bit64-4.8.0/bit64/R/ops64.R |only bit64-4.8.0/bit64/R/patch64.R | 73 bit64-4.8.0/bit64/R/setops64.R |only bit64-4.8.0/bit64/R/sort64.R | 536 +- bit64-4.8.0/bit64/R/sortuse64.R | 569 +- bit64-4.8.0/bit64/R/zzz.R | 158 bit64-4.8.0/bit64/man/as.character.integer64.Rd | 35 bit64-4.8.0/bit64/man/as.data.frame.integer64.Rd | 6 bit64-4.8.0/bit64/man/as.integer64.character.Rd | 26 bit64-4.8.0/bit64/man/benchmark64.Rd | 27 bit64-4.8.0/bit64/man/bit64-package.Rd | 76 bit64-4.8.0/bit64/man/bit64S3.Rd | 18 bit64-4.8.0/bit64/man/c.integer64.Rd | 14 bit64-4.8.0/bit64/man/cache.Rd | 18 bit64-4.8.0/bit64/man/cumsum.integer64.Rd | 4 bit64-4.8.0/bit64/man/extract.replace.integer64.Rd | 13 bit64-4.8.0/bit64/man/factor.Rd |only bit64-4.8.0/bit64/man/format.integer64.Rd | 5 bit64-4.8.0/bit64/man/hashcache.Rd | 10 bit64-4.8.0/bit64/man/hashmap.Rd | 41 bit64-4.8.0/bit64/man/is.sorted.integer64.Rd | 12 bit64-4.8.0/bit64/man/keypos.Rd | 1 bit64-4.8.0/bit64/man/match.integer64.Rd | 31 bit64-4.8.0/bit64/man/matrix64.Rd | 41 bit64-4.8.0/bit64/man/ops64.Rd |only bit64-4.8.0/bit64/man/optimizer64.data.Rd | 4 bit64-4.8.0/bit64/man/plusclass.Rd | 4 bit64-4.8.0/bit64/man/qtile.Rd | 4 bit64-4.8.0/bit64/man/ramsort.integer64.Rd | 10 bit64-4.8.0/bit64/man/rep.integer64.Rd | 2 bit64-4.8.0/bit64/man/seq.integer64.Rd | 38 bit64-4.8.0/bit64/man/sets.Rd |only bit64-4.8.0/bit64/man/sort.integer64.Rd | 10 bit64-4.8.0/bit64/man/sortnut.Rd | 6 bit64-4.8.0/bit64/man/sum.integer64.Rd | 7 bit64-4.8.0/bit64/man/table.Rd |only bit64-4.8.0/bit64/man/unipos.Rd | 6 bit64-4.8.0/bit64/man/unique.integer64.Rd | 2 bit64-4.8.0/bit64/src/hash64.c | 9 bit64-4.8.0/bit64/src/init.c | 10 bit64-4.8.0/bit64/src/integer64.c | 325 - bit64-4.8.0/bit64/src/integer64.h | 10 bit64-4.8.0/bit64/src/sort64.c | 195 bit64-4.8.0/bit64/src/sortuse64.c | 105 bit64-4.8.0/bit64/tests/testthat.R | 1 bit64-4.8.0/bit64/tests/testthat/helper.R | 34 bit64-4.8.0/bit64/tests/testthat/test-bit64-package.R | 246 - bit64-4.8.0/bit64/tests/testthat/test-cache.R |only bit64-4.8.0/bit64/tests/testthat/test-hash64.R | 107 bit64-4.8.0/bit64/tests/testthat/test-highlevel64.R | 480 ++ bit64-4.8.0/bit64/tests/testthat/test-integer64.R | 1578 ++++++- bit64-4.8.0/bit64/tests/testthat/test-matrix64.R | 213 bit64-4.8.0/bit64/tests/testthat/test-ops64.R |only bit64-4.8.0/bit64/tests/testthat/test-setops64.R |only bit64-4.8.0/bit64/tests/testthat/test-sort64.R | 427 + bit64-4.8.0/bit64/tests/testthat/test-sortuse64.R |only bit64-4.8.0/bit64/tests/testthat/test-zzz.R |only 72 files changed, 7673 insertions(+), 5197 deletions(-)
Title: Fit Varying Coefficient Models with Bayesian Additive Regression
Trees
Description: Fits linear varying coefficient (VC) models, which assert a linear relationship between an outcome and several covariates but allow that relationship (i.e., the coefficients or slopes in the linear regression) to change as functions of additional variables known as effect modifiers, by approximating the coefficient functions with Bayesian Additive Regression Trees. Implements a Metropolis-within-Gibbs sampler to simulate draws from the posterior over coefficient function evaluations. VC models with independent observations or repeated observations can be fit. For more details see Deshpande et al. (2026) <doi:10.1214/24-BA1470>.
Author: Sameer K. Deshpande [aut, cre] ,
Ray Bai [aut] ,
Cecilia Balocchi [aut] ,
Jennifer Starling [aut],
Jordan Weiss [aut]
Maintainer: Sameer K. Deshpande <sameer.deshpande@wisc.edu>
Diff between VCBART versions 1.2.4 dated 2025-12-09 and 1.2.5 dated 2026-04-21
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- inst/CITATION | 6 +++--- man/VCBART_ind.Rd | 4 ++-- src/Makevars | 5 ++++- src/Makevars.win | 4 +++- 6 files changed, 22 insertions(+), 17 deletions(-)
Title: Embedded JavaScript and WebAssembly Engine for R
Description: An R interface to V8 <https://v8.dev>: Google's open source JavaScript
and WebAssembly engine. This package can be compiled either with V8 or NodeJS
when built as a shared library.
Author: Jeroen Ooms [aut, cre] ,
George Stagg [ctb] ,
Jan Marvin Garbuszus [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between V8 versions 8.1.0 dated 2026-04-12 and 8.2.0 dated 2026-04-21
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS | 3 +++ build/partial.rdb |binary inst/doc/npm.html | 4 ++-- inst/doc/v8_intro.html | 6 +++--- tools/winlibs.R | 6 +++--- 7 files changed, 20 insertions(+), 17 deletions(-)
Title: A Simple Package for Testing R Packages
Description: Provides two convenience functions assert() and test_pkg() to
facilitate testing R packages.
Author: Yihui Xie [aut, cre] ,
Tomas Kalibera [ctb],
Steven Mortimer [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between testit versions 0.17 dated 2026-03-06 and 0.18 dated 2026-04-21
testit-0.17/testit/tests/testit/test-assert.R |only testit-0.18/testit/DESCRIPTION | 6 +- testit-0.18/testit/MD5 | 13 +++-- testit-0.18/testit/R/utils.R | 12 ++--- testit-0.18/testit/tests/testit/test-snapshots-advanced.md | 12 +++-- testit-0.18/testit/tests/testit/test-snapshots-basic.md | 13 ++++- testit-0.18/testit/tests/testit/test-testit.R |only testit-0.18/testit/tests/testit/test-utils.R | 29 +++++++++++++ testit-0.18/testit/tests/testit/test-utils.md |only 9 files changed, 62 insertions(+), 23 deletions(-)
Title: Exact Sequential Analysis for Poisson and Binomial Data
Description: Functions to calculate exact critical values, statistical power, expected time to signal, and required sample sizes for performing exact sequential analysis. All these calculations can be done for either Poisson or binomial data, for continuous or group sequential analyses, and for different types of rejection boundaries. In case of group sequential analyses, the group sizes do not have to be specified in advance and the alpha spending can be arbitrarily settled. For regression versions of the methods, Monte Carlo and asymptotic methods are used.
Author: Ivair Ramos Silva [aut, cre],
Martin Kulldorff [aut]
Maintainer: Ivair Ramos Silva <ivair@ufop.edu.br>
Diff between Sequential versions 4.5.2 dated 2025-12-01 and 4.6.0 dated 2026-04-21
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/Analyze.Multinomial.R | 12 +++++++----- R/AnalyzeSetUp.Multinomial.R | 8 +++----- man/AnalyzeSetUp.Multinomial.Rd | 4 +--- man/Sequential-package.Rd | 7 +++++-- 6 files changed, 25 insertions(+), 24 deletions(-)
Title: Query 'SWI'-'Prolog' from R
Description: This R package connects to SWI-Prolog, <https://www.swi-prolog.org/>, so that R can send deterministic and non-deterministic queries to prolog (consult, query/submit, once, findall).
Author: Matthias Gondan [aut, com, cre] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
Diff between rolog versions 0.9.25 dated 2026-02-24 and 0.9.26 dated 2026-04-21
DESCRIPTION | 12 ++--- MD5 | 8 +-- NEWS.md | 4 + inst/doc/rolog.html | 10 ++-- src/rolog.cpp | 106 +++++++++++++++++++++++++++++++++++++++------------- 5 files changed, 99 insertions(+), 41 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library aiming towards
a good balance between speed and ease of use. It provides high-level syntax and
functionality deliberately similar to Matlab. It is useful for algorithm development
directly in C++, or quick conversion of research code into production environments.
It provides efficient classes for vectors, matrices and cubes where dense and sparse
matrices are supported. Integer, floating point and complex numbers are supported.
A sophisticated expression evaluator (based on template meta-programming) automatically
combines several operations to increase speed and efficiency. Dynamic evaluation
automatically chooses optimal code paths based on detected matrix structures.
Matrix decompositions are provided through integration with LAPACK, or one of its
high performance drop-in replacements (such as 'MKL' or 'OpenBLAS'). It can
automatically use 'OpenMP' multi-threading (parallelisation) to speed up
computationally expensive operations [...truncated...]
Author: Dirk Eddelbuettel [aut, cre] ,
Romain Francois [aut] ,
Doug Bates [aut] ,
Binxiang Ni [aut],
Conrad Sanderson [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 15.2.4-1 dated 2026-03-17 and 15.2.6-1 dated 2026-04-21
RcppArmadillo-15.2.4-1/RcppArmadillo/inst/doc/RcppArmadillo-intro.Rnw |only RcppArmadillo-15.2.4-1/RcppArmadillo/inst/doc/RcppArmadillo-sparseMatrix.Rnw |only RcppArmadillo-15.2.4-1/RcppArmadillo/inst/include/current |only RcppArmadillo-15.2.4-1/RcppArmadillo/inst/include/legacy |only RcppArmadillo-15.2.4-1/RcppArmadillo/vignettes/RcppArmadillo-intro.Rnw |only RcppArmadillo-15.2.4-1/RcppArmadillo/vignettes/RcppArmadillo-sparseMatrix.Rnw |only RcppArmadillo-15.2.4-1/RcppArmadillo/vignettes/pdf |only RcppArmadillo-15.2.6-1/RcppArmadillo/ChangeLog | 67 RcppArmadillo-15.2.6-1/RcppArmadillo/DESCRIPTION | 18 RcppArmadillo-15.2.6-1/RcppArmadillo/MD5 | 1976 +++------- RcppArmadillo-15.2.6-1/RcppArmadillo/README.md | 11 RcppArmadillo-15.2.6-1/RcppArmadillo/build/partial.rdb |binary RcppArmadillo-15.2.6-1/RcppArmadillo/build/vignette.rds |binary RcppArmadillo-15.2.6-1/RcppArmadillo/cleanup | 1 RcppArmadillo-15.2.6-1/RcppArmadillo/configure | 18 RcppArmadillo-15.2.6-1/RcppArmadillo/configure.ac | 2 RcppArmadillo-15.2.6-1/RcppArmadillo/inst/NEWS.Rd | 27 RcppArmadillo-15.2.6-1/RcppArmadillo/inst/doc/RcppArmadillo-intro.pdf |binary RcppArmadillo-15.2.6-1/RcppArmadillo/inst/doc/RcppArmadillo-intro.pdf.asis |only RcppArmadillo-15.2.6-1/RcppArmadillo/inst/doc/RcppArmadillo-sparseMatrix.pdf |binary RcppArmadillo-15.2.6-1/RcppArmadillo/inst/doc/RcppArmadillo-sparseMatrix.pdf.asis |only RcppArmadillo-15.2.6-1/RcppArmadillo/inst/include/RcppArmadillo.h | 5 RcppArmadillo-15.2.6-1/RcppArmadillo/inst/include/RcppArmadillo/interface/RcppArmadilloForward.h | 39 RcppArmadillo-15.2.6-1/RcppArmadillo/inst/include/RcppArmadillo/version/arma.h | 62 RcppArmadillo-15.2.6-1/RcppArmadillo/inst/include/RcppArmadilloExtensions/rmultinom.h | 79 RcppArmadillo-15.2.6-1/RcppArmadillo/inst/include/armadillo | 944 ++++ RcppArmadillo-15.2.6-1/RcppArmadillo/inst/include/armadillo_bits |only RcppArmadillo-15.2.6-1/RcppArmadillo/inst/tinytest/test_rmultinom.R | 27 RcppArmadillo-15.2.6-1/RcppArmadillo/vignettes/RcppArmadillo-intro.pdf.asis |only RcppArmadillo-15.2.6-1/RcppArmadillo/vignettes/RcppArmadillo-sparseMatrix.pdf.asis |only 30 files changed, 1748 insertions(+), 1528 deletions(-)
Title: Named Capture to Data Tables
Description: User-friendly functions for extracting a data
table (row for each match, column for each group)
from non-tabular text data using regular expressions,
and for melting columns that match a regular expression.
Patterns are defined using a readable syntax
that makes it easy to build complex patterns
in terms of simpler, re-usable sub-patterns.
Named R arguments are translated to column names
in the output; capture groups without names are used
internally in order to provide a standard interface
to three regular expression 'C' libraries
('PCRE', 'RE2', 'ICU').
Output can also include numeric columns via
user-specified type conversion functions.
Author: Toby Hocking [aut, cre]
Maintainer: Toby Hocking <toby.hocking@r-project.org>
Diff between nc versions 2026.2.20 dated 2026-02-26 and 2026.4.20 dated 2026-04-21
nc-2026.2.20/nc/inst/extdata/invalid.R |only nc-2026.2.20/nc/inst/extdata/valid.R |only nc-2026.4.20/nc/DESCRIPTION | 6 - nc-2026.4.20/nc/MD5 | 31 +++---- nc-2026.4.20/nc/NEWS | 6 + nc-2026.4.20/nc/R/before_match.R | 18 ++-- nc-2026.4.20/nc/build/vignette.rds |binary nc-2026.4.20/nc/inst/doc/v0-overview.html | 4 nc-2026.4.20/nc/inst/doc/v1-capture-first.html | 18 ++-- nc-2026.4.20/nc/inst/doc/v2-capture-all.html | 4 nc-2026.4.20/nc/inst/doc/v3-capture-melt.html | 4 nc-2026.4.20/nc/inst/doc/v4-comparisons.html | 4 nc-2026.4.20/nc/inst/doc/v5-helpers.html | 4 nc-2026.4.20/nc/inst/doc/v6-engines.html | 12 +- nc-2026.4.20/nc/inst/doc/v7-capture-glob.html | 84 +++++++++---------- nc-2026.4.20/nc/inst/extdata/data.table.Archive.html |only nc-2026.4.20/nc/man/before_match.Rd | 7 + nc-2026.4.20/nc/tests/testthat/test-CRAN-all.R | 55 +++++++++++- 18 files changed, 158 insertions(+), 99 deletions(-)
Title: Iota Inter Coder Reliability for Content Analysis
Description: Routines and tools for assessing the quality of content
analysis on the basis of the Iota Reliability Concept. The concept is
inspired by item response theory and can be applied to any kind of
content analysis which uses a standardized coding scheme and discrete
categories. It is also applicable for content analysis conducted by
artificial intelligence. The package provides reliability measures
for a complete scale as well as for every single category. Analysis of
subgroup-invariance and error corrections are implemented. This
information can support the development process of a coding scheme and
allows a detailed inspection of the quality of the generated data.
Equations and formulas working in this package are part of Berding et
al. (2022)<doi:10.3389/feduc.2022.818365> and Berding and Pargmann
(2022) <doi:10.30819/5581>.
Author: Berding Florian [aut, cre] ,
Pargmann Julia [ctb]
Maintainer: Berding Florian <florian.berding@uni-hamburg.de>
Diff between iotarelr versions 0.1.7 dated 2026-01-12 and 0.1.8 dated 2026-04-21
DESCRIPTION | 6 MD5 | 29 NEWS.md | 8 R/additional_functions.R | 9 R/plots.R | 4 README.md | 8 inst/doc/Old_01_How_to_use_Iota1.html | 4 inst/doc/V_02_Estimating_Consequences_for_Subsequent_Analyses.html | 4 inst/doc/V_03_Different_Guidance_Functioning.html | 42 - inst/doc/V_04_Error_Correction.html | 18 inst/doc/V_05_Test_New_Raters.html | 4 inst/doc/iotarelr.html | 10 man/figures/logo.png |only tests/testthat/test_basic_funct.R | 333 ---------- tests/testthat/test_consequences.R |only tests/testthat/test_fast_and_slow_computation.R |only tests/testthat/test_input.R |only tests/testthat/test_plots.R |only 18 files changed, 85 insertions(+), 394 deletions(-)
Title: Area-Proportional Euler and Venn Diagrams with Ellipses
Description: Generate area-proportional Euler diagrams
using numerical optimization. An Euler diagram is a generalization of a Venn
diagram, relaxing the criterion that all interactions need to be
represented. Diagrams may be fit with ellipses and circles via
a wide range of inputs and can be visualized in numerous ways.
Author: Johan Larsson [aut, cre] ,
A. Jonathan R. Godfrey [ctb],
Peter Gustafsson [ctb],
David H. Eberly [ctb] ,
Emanuel Huber [ctb] ,
Florian Prive [ctb]
Maintainer: Johan Larsson <johanlarsson@outlook.com>
Diff between eulerr versions 7.0.4 dated 2025-09-24 and 7.1.0 dated 2026-04-21
eulerr-7.0.4/eulerr/man/print.venn.Rd |only eulerr-7.1.0/eulerr/DESCRIPTION | 8 eulerr-7.1.0/eulerr/MD5 | 70 - eulerr-7.1.0/eulerr/NAMESPACE | 2 eulerr-7.1.0/eulerr/NEWS.md | 18 eulerr-7.1.0/eulerr/R/data.R | 2 eulerr-7.1.0/eulerr/R/eulerr_options.R | 19 eulerr-7.1.0/eulerr/R/fit_diagram.R | 2 eulerr-7.1.0/eulerr/R/plot.euler.R | 565 ++++++++++++++- eulerr-7.1.0/eulerr/R/print.euler.R | 14 eulerr-7.1.0/eulerr/R/setup_geometry.R | 91 +- eulerr-7.1.0/eulerr/R/setup_grobs.R | 314 +++++++- eulerr-7.1.0/eulerr/R/tag-grobs.R | 6 eulerr-7.1.0/eulerr/R/venn.R | 6 eulerr-7.1.0/eulerr/README.md | 31 eulerr-7.1.0/eulerr/build/partial.rdb |binary eulerr-7.1.0/eulerr/build/vignette.rds |binary eulerr-7.1.0/eulerr/inst/doc/gallery.R | 248 ++++-- eulerr-7.1.0/eulerr/inst/doc/gallery.Rmd | 240 ++++-- eulerr-7.1.0/eulerr/inst/doc/gallery.html | 252 ++++-- eulerr-7.1.0/eulerr/inst/doc/introduction.html | 11 eulerr-7.1.0/eulerr/inst/doc/loss-functions.html | 3 eulerr-7.1.0/eulerr/inst/doc/under-the-hood.html | 39 - eulerr-7.1.0/eulerr/inst/doc/venn-diagrams.html | 6 eulerr-7.1.0/eulerr/inst/doc/visualization.html | 24 eulerr-7.1.0/eulerr/man/eulerr_options.Rd | 3 eulerr-7.1.0/eulerr/man/figures/README-plot_method-1.png |binary eulerr-7.1.0/eulerr/man/plants.Rd | 2 eulerr-7.1.0/eulerr/man/plot.euler.Rd | 37 eulerr-7.1.0/eulerr/man/print.eulerr_venn.Rd |only eulerr-7.1.0/eulerr/man/setup_grobs.Rd | 4 eulerr-7.1.0/eulerr/man/venn.Rd | 4 eulerr-7.1.0/eulerr/tests/testthat/test-inputs.R | 1 eulerr-7.1.0/eulerr/tests/testthat/test-plotting.R | 274 +++++++ eulerr-7.1.0/eulerr/tests/testthat/test-printing.R | 1 eulerr-7.1.0/eulerr/vignettes/eulerr.bib | 352 ++++----- eulerr-7.1.0/eulerr/vignettes/gallery.Rmd | 240 ++++-- 37 files changed, 2231 insertions(+), 658 deletions(-)
Title: Mutational Signatures from COSMIC (Catalogue of Somatic
Mutations in Cancer)
Description: A data package with 2 main package variables: 'signature' and 'etiology'.
The 'signature' variable contains the latest mutational signature profiles
released on COSMIC <https://cancer.sanger.ac.uk/signatures/> for 3 mutation
types:
* Single base substitutions in the context of preceding and following bases,
* Doublet base substitutions, and
* Small insertions and deletions.
'cosmicsig' stands for COSMIC signatures. Please run ?'cosmicsig' for more
information.
Author: Steven Rozen [aut, cre] ,
Nanhai Jiang [aut]
Maintainer: Steven Rozen <steverozen@pm.me>
Diff between cosmicsig versions 1.1.1 dated 2023-08-30 and 1.3.1 dated 2026-04-21
DESCRIPTION | 16 +- MD5 | 72 +++++++------ NAMESPACE | 12 +- NEWS.md | 150 +++++++++++++++------------- R/COSMIC_v3.0.R | 34 +++--- R/COSMIC_v3.1.R | 32 ++--- R/COSMIC_v3.2.R | 56 +++++----- R/COSMIC_v3.4.R |only R/COSMIC_v3.5.R |only R/cosmicsig.R | 7 - R/etiology.R | 11 +- R/get_etiology.R | 6 - R/possible_artifacts.R | 35 +++--- R/rare_signatures.R | 22 ++-- R/signature.R | 6 - README.md | 85 +++++++-------- build/partial.rdb |binary data/COSMIC_v3.4.rda |only data/COSMIC_v3.5.rda |only data/etiology.rda |binary data/signature.rda |binary inst/CITATION | 18 +-- inst/WORDLIST | 58 +++++----- inst/scripts |only man/COSMIC_v3.0.Rd | 66 ++++++------ man/COSMIC_v3.1.Rd | 64 +++++------ man/COSMIC_v3.2.Rd | 88 ++++++++-------- man/COSMIC_v3.3.Rd | 4 man/COSMIC_v3.4.Rd |only man/COSMIC_v3.5.Rd |only man/SBS96_ID_to_SBS192_ID.Rd | 50 ++++----- man/cosmicsig.Rd | 131 ++++++++++++------------ man/etiology.Rd | 81 ++++++++------- man/get_etiology.Rd | 78 +++++++------- man/possible_artifacts.Rd | 36 +++--- man/rare_signatures.Rd | 34 +++--- man/signature.Rd | 98 +++++++++--------- tests/testthat.R | 8 - tests/testthat/test_SBS96_ID_to_SBS192_ID.R | 10 - tests/testthat/test_get_etiology.R | 22 ++-- 40 files changed, 723 insertions(+), 667 deletions(-)
Title: Cohort Data Analyses
Description: Functions to make lifetables and to calculate hazard function estimate using Poisson regression model with splines. Includes function to draw simple flowchart of cohort study. Function boxesLx() makes boxes of transition rates between states. It utilizes 'Epi' package 'Lexis' data.
Author: Jari Haukka [aut, cre]
Maintainer: Jari Haukka <jari.haukka@helsinki.fi>
Diff between cohorttools versions 0.1.7 dated 2025-10-18 and 0.1.8 dated 2026-04-21
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++-- R/cohorttools.R | 12 ++++++++---- 4 files changed, 17 insertions(+), 13 deletions(-)