Title: POSIX System Utilities
Description: Bindings to system utilities found in most Unix systems such as
POSIX functions which are not part of the Standard C Library.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between unix versions 1.5.9 dated 2024-10-04 and 1.6.0 dated 2026-04-23
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 3 +++ tests/testthat/test-forking.R | 2 +- 4 files changed, 11 insertions(+), 8 deletions(-)
Title: Canonical Correlations and Tests of Independence
Description: A simple interface for multivariate correlation analysis that unifies various classical
statistical procedures including t-tests, tests in univariate and multivariate linear models,
parametric and nonparametric tests for correlation, Kruskal-Wallis tests, common approximate
versions of Wilcoxon rank-sum and signed rank tests, chi-squared tests of independence, score
tests of particular hypotheses in generalized linear models, canonical correlation analysis and
linear discriminant analysis.
Author: Robert Schlicht [aut, cre]
Maintainer: Robert Schlicht <robert.schlicht@tu-dresden.de>
Diff between cctest versions 2.3.2 dated 2026-03-26 and 2.3.3 dated 2026-04-23
DESCRIPTION | 6 - MD5 | 8 - NAMESPACE | 2 R/cctest.R | 263 +++++++++++++++++++++++++++++----------------------------- man/cctest.Rd | 123 +++++++++++++-------------- 5 files changed, 203 insertions(+), 199 deletions(-)
Title: Standardized Git Repository Data
Description: Obtain standardized data from multiple 'Git' services, including 'GitHub' and 'GitLab'.
Designed to be 'Git' service-agnostic, this package assists teams with activities spread across various
'Git' platforms by providing a unified way to access repository data.
Author: Maciej Banas [aut, cre],
Kamil Koziej [aut],
Karolina Marcinkowska [aut],
Matt Secrest [aut]
Maintainer: Maciej Banas <banasmaciek@gmail.com>
Diff between GitStats versions 2.5.0 dated 2026-04-02 and 2.5.1 dated 2026-04-23
DESCRIPTION | 6 MD5 | 83 ++-- NAMESPACE | 1 NEWS.md | 41 +- R/EngineGraphQL.R | 140 +++++-- R/EngineGraphQLGitLab.R | 84 ++++ R/GitHost.R | 22 - R/GitHostGitHub.R | 7 R/GitHostGitLab.R | 10 R/GitStats.R | 109 ++++- R/set_host.R | 6 README.md | 37 +- inst/WORDLIST | 2 inst/doc/store_data.R | 5 inst/doc/store_data.Rmd | 8 inst/doc/store_data.html | 368 ++++++++++---------- man/is_parallel.Rd |only man/set_github_host.Rd | 6 man/set_gitlab_host.Rd | 6 man/set_parallel.Rd | 12 tests/testthat/_snaps/01-get_repos-GitLab.md | 9 tests/testthat/_snaps/helpers.md | 1 tests/testthat/helper-error-fixtures.R | 20 + tests/testthat/helper-expect-responses.R | 17 tests/testthat/setup.R | 2 tests/testthat/test-00-api-requests.R | 2 tests/testthat/test-00-get_orgs-GitLab.R | 2 tests/testthat/test-00-graphql_errors.R | 11 tests/testthat/test-01-get_repos-GitHub.R | 10 tests/testthat/test-01-get_repos-GitLab.R | 112 +++++- tests/testthat/test-02-get_commits-GitLab.R | 2 tests/testthat/test-03-get_files_structure-GitHub.R | 15 tests/testthat/test-03-get_files_structure-GitLab.R | 4 tests/testthat/test-get_files_tree-REST.R | 8 tests/testthat/test-get_issues_stats.R | 2 tests/testthat/test-get_pull_requests-04-stats.R | 2 tests/testthat/test-get_storage.R | 2 tests/testthat/test-incremental-cache.R | 18 tests/testthat/test-parallel.R | 142 +++++-- tests/testthat/test-set_host.R | 20 + tests/testthat/test-set_storage.R | 78 ++-- tests/testthat/test-utils.R | 4 vignettes/store_data.Rmd | 8 43 files changed, 940 insertions(+), 504 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-12-03 2.1
2015-05-22 2.0
2015-01-08 1.1
2014-07-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-08-27 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-11-28 1.0
Title: Variable Importance Plots
Description: A general framework for constructing variable importance plots from
various types of machine learning models in R. Aside from some standard model-
specific variable importance measures, this package also provides model-
agnostic approaches that can be applied to any supervised learning algorithm.
These include 1) an efficient permutation-based variable importance measure,
2) variable importance based on Shapley values (Strumbelj and Kononenko,
2014) <doi:10.1007/s10115-013-0679-x>, and 3) the variance-based
approach described in Greenwell et al. (2018) <doi:10.48550/arXiv.1805.04755>. A
variance-based method for quantifying the relative strength of interaction
effects is also included (see the previous reference for details).
Author: Brandon M. Greenwell [aut, cre] ,
Brad Boehmke [aut]
Maintainer: Brandon M. Greenwell <greenwell.brandon@gmail.com>
Diff between vip versions 0.4.5 dated 2025-12-12 and 0.4.6 dated 2026-04-23
vip-0.4.5/vip/inst/tinytest/test_get_feature_names.R |only vip-0.4.6/vip/DESCRIPTION | 9 +- vip-0.4.6/vip/MD5 | 63 +++++++++---------- vip-0.4.6/vip/NEWS.md | 19 +++++ vip-0.4.6/vip/R/get_feature_names.R | 5 - vip-0.4.6/vip/R/vi_permute.R | 2 vip-0.4.6/vip/inst/tinytest/test_pkg_C50.R | 4 - vip-0.4.6/vip/inst/tinytest/test_pkg_Cubist.R | 4 - vip-0.4.6/vip/inst/tinytest/test_pkg_RSNNS.R | 2 vip-0.4.6/vip/inst/tinytest/test_pkg_caret.R | 4 - vip-0.4.6/vip/inst/tinytest/test_pkg_earth.R | 4 - vip-0.4.6/vip/inst/tinytest/test_pkg_gbm.R | 4 - vip-0.4.6/vip/inst/tinytest/test_pkg_glmnet.R | 4 - vip-0.4.6/vip/inst/tinytest/test_pkg_h2o.R | 4 - vip-0.4.6/vip/inst/tinytest/test_pkg_lightgbm.R | 2 vip-0.4.6/vip/inst/tinytest/test_pkg_mixOmics.R | 2 vip-0.4.6/vip/inst/tinytest/test_pkg_mlr.R | 2 vip-0.4.6/vip/inst/tinytest/test_pkg_mlr3.R | 2 vip-0.4.6/vip/inst/tinytest/test_pkg_neuralnet.R | 4 - vip-0.4.6/vip/inst/tinytest/test_pkg_nnet.R | 4 - vip-0.4.6/vip/inst/tinytest/test_pkg_party.R | 4 - vip-0.4.6/vip/inst/tinytest/test_pkg_partykit.R | 4 - vip-0.4.6/vip/inst/tinytest/test_pkg_pls.R | 4 - vip-0.4.6/vip/inst/tinytest/test_pkg_randomForest.R | 4 - vip-0.4.6/vip/inst/tinytest/test_pkg_ranger.R | 4 - vip-0.4.6/vip/inst/tinytest/test_pkg_rpart.R | 4 - vip-0.4.6/vip/inst/tinytest/test_pkg_stats.R | 4 - vip-0.4.6/vip/inst/tinytest/test_pkg_tidymodels.R | 2 vip-0.4.6/vip/inst/tinytest/test_pkg_xgboost.R | 12 +-- vip-0.4.6/vip/inst/tinytest/test_vi_firm.R | 18 ++--- vip-0.4.6/vip/inst/tinytest/test_vi_permute.R | 22 +++--- vip-0.4.6/vip/man/vi_model.Rd | 4 - vip-0.4.6/vip/man/vi_permute.Rd | 2 33 files changed, 113 insertions(+), 119 deletions(-)
Title: Lean Analytics and Robust Exploration Sidekick
Description: Auxiliary package for better/faster analytics, visualization, data mining, and machine
learning tasks. With a wide variety of family functions, like Machine Learning, Data Wrangling,
Marketing Mix Modeling (Robyn), Exploratory, API, and Scrapper, it helps the analyst or
data scientist to get quick and robust results, without the need of repetitive coding or
advanced R programming skills.
Author: Bernardo Lares [aut, cre]
Maintainer: Bernardo Lares <laresbernardo@gmail.com>
Diff between lares versions 5.3.2 dated 2025-08-18 and 5.4.0 dated 2026-04-23
lares-5.3.2/lares/man/get_mp3.Rd |only lares-5.3.2/lares/man/trim_mp3.Rd |only lares-5.4.0/lares/DESCRIPTION | 18 lares-5.4.0/lares/LICENSE |only lares-5.4.0/lares/MD5 | 239 +++--- lares-5.4.0/lares/NAMESPACE | 7 lares-5.4.0/lares/R/audio.R | 260 ++++++- lares-5.4.0/lares/R/cache.R | 2 lares-5.4.0/lares/R/calendar.R |only lares-5.4.0/lares/R/clusters.R | 2 lares-5.4.0/lares/R/correlations.R | 30 lares-5.4.0/lares/R/credentials.R | 63 + lares-5.4.0/lares/R/crossbrand.R | 2 lares-5.4.0/lares/R/dont_sleep.R | 45 - lares-5.4.0/lares/R/dropbox.R | 2 lares-5.4.0/lares/R/encryption.R | 2 lares-5.4.0/lares/R/facebook.R | 16 lares-5.4.0/lares/R/frequencies.R | 35 lares-5.4.0/lares/R/lares.R | 3 lares-5.4.0/lares/R/lasso.R | 2 lares-5.4.0/lares/R/mails.R | 2 lares-5.4.0/lares/R/maze.R | 1 lares-5.4.0/lares/R/missings.R | 2 lares-5.4.0/lares/R/model_functions.R | 29 lares-5.4.0/lares/R/model_plots.R | 104 +- lares-5.4.0/lares/R/onehotencoding.R | 187 ++--- lares-5.4.0/lares/R/other_functions.R | 1127 ------------------------------- lares-5.4.0/lares/R/querieSQL.R | 7 lares-5.4.0/lares/R/shapley.R | 2 lares-5.4.0/lares/R/text_mining.R | 2 lares-5.4.0/lares/R/tictoc.R | 2 lares-5.4.0/lares/R/update.R | 11 lares-5.4.0/lares/R/utils_data.R |only lares-5.4.0/lares/R/utils_system.R |only lares-5.4.0/lares/R/utils_text.R |only lares-5.4.0/lares/R/wrangling.R | 4 lares-5.4.0/lares/README.md | 14 lares-5.4.0/lares/build |only lares-5.4.0/lares/inst/doc |only lares-5.4.0/lares/man/autoline.Rd | 3 lares-5.4.0/lares/man/bind_files.Rd | 3 lares-5.4.0/lares/man/bring_api.Rd | 1 lares-5.4.0/lares/man/cal_split.Rd |only lares-5.4.0/lares/man/chr2num.Rd | 3 lares-5.4.0/lares/man/corr.Rd | 1 lares-5.4.0/lares/man/corr_cross.Rd | 34 lares-5.4.0/lares/man/corr_var.Rd | 1 lares-5.4.0/lares/man/crosstab.Rd | 1 lares-5.4.0/lares/man/db_download.Rd | 1 lares-5.4.0/lares/man/db_upload.Rd | 1 lares-5.4.0/lares/man/df_str.Rd | 1 lares-5.4.0/lares/man/dist2d.Rd | 1 lares-5.4.0/lares/man/distr.Rd | 1 lares-5.4.0/lares/man/dont_sleep.Rd | 5 lares-5.4.0/lares/man/export_plot.Rd | 1 lares-5.4.0/lares/man/export_results.Rd | 1 lares-5.4.0/lares/man/fb_accounts.Rd | 2 lares-5.4.0/lares/man/fb_ads.Rd | 2 lares-5.4.0/lares/man/fb_creatives.Rd | 2 lares-5.4.0/lares/man/fb_insights.Rd | 4 lares-5.4.0/lares/man/fb_report_check.Rd | 2 lares-5.4.0/lares/man/fb_rf.Rd | 2 lares-5.4.0/lares/man/fb_token.Rd | 2 lares-5.4.0/lares/man/filesGD.Rd | 2 lares-5.4.0/lares/man/files_functions.Rd | 3 lares-5.4.0/lares/man/font_exists.Rd | 3 lares-5.4.0/lares/man/formatColoured.Rd | 3 lares-5.4.0/lares/man/format_string.Rd | 3 lares-5.4.0/lares/man/freqs.Rd | 1 lares-5.4.0/lares/man/freqs_df.Rd | 1 lares-5.4.0/lares/man/freqs_list.Rd | 1 lares-5.4.0/lares/man/freqs_plot.Rd | 1 lares-5.4.0/lares/man/get_credentials.Rd | 6 lares-5.4.0/lares/man/glued.Rd | 7 lares-5.4.0/lares/man/google_sheets.Rd | 2 lares-5.4.0/lares/man/google_trends.Rd | 2 lares-5.4.0/lares/man/grepm.Rd | 3 lares-5.4.0/lares/man/h2o_automl.Rd | 18 lares-5.4.0/lares/man/h2o_results.Rd | 5 lares-5.4.0/lares/man/h2o_selectmodel.Rd | 1 lares-5.4.0/lares/man/haveInternet.Rd | 3 lares-5.4.0/lares/man/holidays.Rd | 11 lares-5.4.0/lares/man/image_metadata.Rd | 3 lares-5.4.0/lares/man/importxlsx.Rd | 3 lares-5.4.0/lares/man/ip_data.Rd | 5 lares-5.4.0/lares/man/json2vector.Rd | 3 lares-5.4.0/lares/man/lasso_vars.Rd | 1 lares-5.4.0/lares/man/list_cats.Rd | 3 lares-5.4.0/lares/man/listfiles.Rd | 3 lares-5.4.0/lares/man/mail_send.Rd | 1 lares-5.4.0/lares/man/markdown2df.Rd | 3 lares-5.4.0/lares/man/maze_solve.Rd | 2 lares-5.4.0/lares/man/missingness.Rd | 1 lares-5.4.0/lares/man/model_metrics.Rd | 1 lares-5.4.0/lares/man/move_files.Rd | 3 lares-5.4.0/lares/man/mp3_get.Rd |only lares-5.4.0/lares/man/mp3_trim.Rd |only lares-5.4.0/lares/man/mp3_update_tags.Rd |only lares-5.4.0/lares/man/msplit.Rd | 1 lares-5.4.0/lares/man/myip.Rd | 3 lares-5.4.0/lares/man/plot_cats.Rd | 1 lares-5.4.0/lares/man/plot_df.Rd | 1 lares-5.4.0/lares/man/plot_nums.Rd | 1 lares-5.4.0/lares/man/quants.Rd | 1 lares-5.4.0/lares/man/queryDB.Rd | 8 lares-5.4.0/lares/man/quiet.Rd | 3 lares-5.4.0/lares/man/read.file.Rd | 3 lares-5.4.0/lares/man/spread_list.Rd | 2 lares-5.4.0/lares/man/statusbar.Rd | 1 lares-5.4.0/lares/man/stocks_hist.Rd | 2 lares-5.4.0/lares/man/stocks_plots.Rd | 2 lares-5.4.0/lares/man/tic.Rd | 1 lares-5.4.0/lares/man/toon_reduction.Rd |only lares-5.4.0/lares/man/tree_var.Rd | 1 lares-5.4.0/lares/man/try_require.Rd | 3 lares-5.4.0/lares/man/updateLares.Rd | 13 lares-5.4.0/lares/man/warnifnot.Rd | 3 lares-5.4.0/lares/man/what_size.Rd | 3 lares-5.4.0/lares/vignettes |only 119 files changed, 881 insertions(+), 1577 deletions(-)
Title: Bayesian Rasch Analysis Using 'brms'
Description: Reproduces classic Rasch psychometric analysis features
using Bayesian item response theory models fitted with 'brms' following
Bürkner (2021) <doi:10.18637/jss.v100.i05> and Bürkner (2020) <doi:10.3390/jintelligence8010005>.
Supports both dichotomous and polytomous Rasch models.
Features include posterior predictive item fit, conditional infit, item-restscore
associations, person fit, differential item functioning, local dependence
assessment via Q3 residual correlations, dimensionality assessment with
residual principal components analysis, person-item targeting plots,
item category probability curves, and reliability using relative
measurement uncertainty following Bignardi et al. (2025) <doi:10.31234/osf.io/h54k8_v1>.
Author: Magnus Johansson [aut, cre] ,
Giacomo Bignardi [ctb]
Maintainer: Magnus Johansson <pgmj@pm.me>
Diff between easyRaschBayes versions 0.2.0 dated 2026-03-28 and 0.2.0.1 dated 2026-04-23
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/cicc_plot.R | 4 ++-- 4 files changed, 12 insertions(+), 8 deletions(-)
More information about easyRaschBayes at CRAN
Permanent link
Title: R Interface for Apache Sedona
Description: R interface for 'Apache Sedona' based on 'sparklyr'
(<https://sedona.apache.org>).
Author: Apache Sedona [aut, cre],
Jia Yu [ctb, cph],
Yitao Li [aut, cph] ,
The Apache Software Foundation [cph],
RStudio [cph]
Maintainer: Apache Sedona <private@sedona.apache.org>
Diff between apache.sedona versions 1.8.1 dated 2026-01-09 and 1.9.0 dated 2026-04-23
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/dependencies.R | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-15 0.1.6-1
2025-05-07 0.1.6
2025-05-05 0.1.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-15 0.1.0-1
2023-03-28 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-15 0.1.1-1
2023-02-11 0.1.1
Title: Easily Install and Load the 'Tidymodels' Packages
Description: The tidy modeling "verse" is a collection of packages for
modeling and statistical analysis that share the underlying design
philosophy, grammar, and data structures of the tidyverse.
Author: Max Kuhn [aut, cre] ,
Hadley Wickham [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between tidymodels versions 1.4.1 dated 2025-09-08 and 1.5.0 dated 2026-04-23
DESCRIPTION | 20 ++++++++++---------- MD5 | 8 ++++---- NEWS.md | 6 ++++++ README.md | 20 ++++++++++---------- build/vignette.rds |binary 5 files changed, 30 insertions(+), 24 deletions(-)
Title: A Library for using 'Pathling'
Description: R API for 'Pathling', a tool for querying and transforming electronic health record data that is represented using the 'Fast Healthcare Interoperability Resources' (FHIR) standard - see <https://pathling.csiro.au/docs>.
Author: Australian e-Health Research Centre, CSIRO [cph, cre],
Piotr Szul [aut],
John Grimes [aut]
Maintainer: "Australian e-Health Research Centre, CSIRO" <pathling@csiro.au>
Diff between pathling versions 9.5.0 dated 2026-03-17 and 9.6.0 dated 2026-04-23
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/view.R | 8 ++++---- man/ds_view.Rd | 4 ++-- 4 files changed, 13 insertions(+), 13 deletions(-)
Title: Bayesian Longitudinal Regularized Quantile Mixed Model
Description: With high-dimensional omics features, repeated measure ANOVA leads to longitudinal gene-environment interaction studies that have intra-cluster correlations, outlying observations and structured sparsity arising from the ANOVA design. In this package, we have developed robust sparse Bayesian mixed effect models tailored for the above studies (Fan et al. (2025) <doi:10.1093/jrsssc/qlaf027>). An efficient Gibbs sampler has been developed to facilitate fast computation. The Markov chain Monte Carlo algorithms of the proposed and alternative methods are efficiently implemented in 'C++'. The development of this software package and the associated statistical methods have been partially supported by an Innovative Research Award from Johnson Cancer Research Center, Kansas State University.
Author: Kun Fan [aut, cre],
Shejuty Devnath [aut],
Cen Wu [aut]
Maintainer: Kun Fan <fzt0428@gmail.com>
Diff between mixedBayes versions 0.2.4 dated 2026-04-13 and 0.2.5 dated 2026-04-23
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 9 +++++++-- R/data.R | 8 +++++--- R/mixedBayes.R | 19 +++++++++---------- R/predict_mixedBayes.R | 5 +++++ README.md | 8 ++++---- man/data.Rd | 8 +++++--- man/mixedBayes.Rd | 19 +++++++++---------- man/predict_mixedBayes.Rd | 5 ++++- 10 files changed, 61 insertions(+), 46 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-22 0.1.3
2026-04-08 0.1.2
2026-04-03 0.1.1
2026-03-29 0.1.0
2026-02-12 0.0.9
2026-02-02 0.0.8
2026-01-14 0.0.7
2025-12-19 0.0.6
2025-11-20 0.0.5
2025-06-23 0.0.4
2025-06-16 0.0.3
2025-06-04 0.0.2
2025-06-02 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-12-21 0.1.13
2025-03-14 0.1.12
2025-02-25 0.1.11
2024-10-16 0.1.10
2024-08-19 0.1.9
2024-04-21 0.1.8
2023-08-27 0.1.7
2023-04-19 0.1.6
2023-04-05 0.1.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-03-23 0.1.24
2026-01-15 0.1.15
2025-04-27 0.1.12
2025-04-19 0.1.11
Title: Information Theoretic Analysis of Gene Expression Data
Description: Implements Surprisal analysis for gene expression data such as RNA-seq or microarray experiments. Surprisal analysis is an information-theoretic method that decomposes gene expression data into a baseline state and constraint-associated deviations, capturing coordinated gene expression patterns under different biological conditions. References: Kravchenko-Balasha N. et al. (2014) <doi:10.1371/journal.pone.0108549>. Zadran S. et al. (2014) <doi:10.1073/pnas.1414714111>. Su Y. et al. (2019) <doi:10.1371/journal.pcbi.1007034>. Bogaert K. A. et al. (2018) <doi:10.1371/journal.pone.0195142>.
Author: Annice Najafi [aut, cre]
Maintainer: Annice Najafi <annicenajafi27@gmail.com>
Diff between SurprisalAnalysis versions 3.0.0 dated 2026-01-07 and 3.0.1 dated 2026-04-23
SurprisalAnalysis-3.0.0/SurprisalAnalysis/inst/extdata/GSE60450_Lactation-GenewiseCounts.txt |only SurprisalAnalysis-3.0.0/SurprisalAnalysis/inst/extdata/helper_T_cell_0_test.csv |only SurprisalAnalysis-3.0.0/SurprisalAnalysis/inst/shiny/data |only SurprisalAnalysis-3.0.0/SurprisalAnalysis/inst/shiny/rsconnect |only SurprisalAnalysis-3.0.1/SurprisalAnalysis/DESCRIPTION | 14 SurprisalAnalysis-3.0.1/SurprisalAnalysis/MD5 | 45 SurprisalAnalysis-3.0.1/SurprisalAnalysis/NAMESPACE | 131 - SurprisalAnalysis-3.0.1/SurprisalAnalysis/R/runApp.R | 12 SurprisalAnalysis-3.0.1/SurprisalAnalysis/R/surprisal_analysis.R | 2 SurprisalAnalysis-3.0.1/SurprisalAnalysis/inst/doc/NormalizationsZeroHandlingComparisons.R | 2 SurprisalAnalysis-3.0.1/SurprisalAnalysis/inst/doc/NormalizationsZeroHandlingComparisons.Rmd | 6 SurprisalAnalysis-3.0.1/SurprisalAnalysis/inst/doc/NormalizationsZeroHandlingComparisons.html | 848 +++----- SurprisalAnalysis-3.0.1/SurprisalAnalysis/inst/doc/RunTimeRecording.Rmd | 4 SurprisalAnalysis-3.0.1/SurprisalAnalysis/inst/doc/RunTimeRecording.html | 836 ++------ SurprisalAnalysis-3.0.1/SurprisalAnalysis/inst/doc/SurprisalAnalysisGuideline.R | 2 SurprisalAnalysis-3.0.1/SurprisalAnalysis/inst/doc/SurprisalAnalysisGuideline.Rmd | 6 SurprisalAnalysis-3.0.1/SurprisalAnalysis/inst/doc/SurprisalAnalysisGuideline.html | 978 +++------- SurprisalAnalysis-3.0.1/SurprisalAnalysis/inst/extdata/GSE60450_Lactation-GenewiseCounts.txt.gz |only SurprisalAnalysis-3.0.1/SurprisalAnalysis/inst/extdata/helper_T_cell_0_test.csv.gz |only SurprisalAnalysis-3.0.1/SurprisalAnalysis/inst/shiny/app.R | 67 SurprisalAnalysis-3.0.1/SurprisalAnalysis/man/GO_analysis_surprisal_analysis.Rd | 156 - SurprisalAnalysis-3.0.1/SurprisalAnalysis/man/runSurprisalApp.Rd | 73 SurprisalAnalysis-3.0.1/SurprisalAnalysis/man/surprisal_analysis.Rd | 64 SurprisalAnalysis-3.0.1/SurprisalAnalysis/vignettes/NormalizationsZeroHandlingComparisons.Rmd | 6 SurprisalAnalysis-3.0.1/SurprisalAnalysis/vignettes/RunTimeRecording.Rmd | 4 SurprisalAnalysis-3.0.1/SurprisalAnalysis/vignettes/SurprisalAnalysisGuideline.Rmd | 6 26 files changed, 1228 insertions(+), 2034 deletions(-)
More information about SurprisalAnalysis at CRAN
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Title: Utilities for using the 'COM(P)ADRE' Matrix Model Database
Description: Utility functions for interacting with the 'COMPADRE' and
'COMADRE' databases of matrix population models. Described in Jones et
al. (2021) <doi:10.1101/2021.04.26.441330>.
Author: Patrick Barks [aut] ,
Danny Buss [aut],
Roberto Salguero-Gomez [aut] ,
Iain Stott [aut] ,
William K. Petry [aut] ,
Tamora James [aut] ,
Owen Jones [aut, cre] ,
Julia Jones [aut] ,
Gesa Roemer [aut] ,
Sam Levin [aut]
Maintainer: Owen Jones <jones@biology.sdu.dk>
Diff between Rcompadre versions 1.4.0 dated 2024-10-16 and 1.5.0 dated 2026-04-23
DESCRIPTION | 41 ++++---- MD5 | 141 ++++++++++++++-------------- NAMESPACE | 7 + NEWS.md | 5 R/ClassUnionMethods.R | 12 -- R/CompadreDB-Methods.R | 105 ++++++++++++++++++++ R/CompadreDB-Subsetting.R | 61 ++---------- R/CompadreDB-Tidyverse.R | 89 ++++++----------- R/CompadreDB.R | 22 ---- R/cdb_collapse.R | 2 R/cdb_export_matlab.R |only R/cdb_fetch.R | 6 - R/cdb_flag.R | 1 R/cdb_mean_matF.R | 1 R/cdb_rbind.R | 85 +++++++++++++--- R/cdb_unflatten.R | 1 R/data.R | 4 R/mpm_elementwise_apply.R | 66 ++++++------- R/mpm_mean.R | 24 ++-- R/mpm_median.R | 30 ++--- R/mpm_sd.R | 32 +++--- R/string_representation.R | 6 - build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/a01_GettingStarted.R | 26 +++-- inst/doc/a01_GettingStarted.Rmd | 20 +++ inst/doc/a01_GettingStarted.html | 15 +- inst/doc/a02_RcompadreTidy.R | 36 +++++-- inst/doc/a02_RcompadreTidy.Rmd | 37 +++++-- inst/doc/a02_RcompadreTidy.html | 20 ++- inst/doc/a03_VectorisingRcompadre.R | 26 ++++- inst/doc/a03_VectorisingRcompadre.Rmd | 22 +++- inst/doc/a03_VectorisingRcompadre.html | 14 +- inst/doc/a04_ObtainingReferences.R | 28 ++++- inst/doc/a04_ObtainingReferences.Rmd | 30 ++++- inst/doc/a04_ObtainingReferences.html | 16 ++- inst/doc/a05_UsingYourOwnData.R | 2 inst/doc/a05_UsingYourOwnData.html | 17 +-- man/CompadreDB-Methods.Rd | 27 ++++- man/CompadreDB-Subsetting.Rd | 9 - man/Rcompadre-package.Rd | 2 man/cdb_export_matlab.Rd |only man/cdb_fetch.Rd | 4 man/cdb_flatten.Rd | 3 man/cdb_id.Rd | 1 man/cdb_id_stages.Rd | 3 man/cdb_id_studies.Rd | 3 man/cdb_mean_matF.Rd | 3 man/cdb_rbind.Rd | 23 +++- man/cdb_unflatten.Rd | 3 man/cdb_unnest.Rd | 3 man/mpm_elementwise_apply.Rd | 21 ++-- man/mpm_mean.Rd | 7 - man/mpm_median.Rd | 3 man/mpm_sd.Rd | 3 man/string_representation.Rd | 3 tests/testthat/test-CompadreDB-Methods.R | 37 ++++++- tests/testthat/test-CompadreDB-Subsetting.R | 15 +- tests/testthat/test-CompadreDB.R | 8 - tests/testthat/test-CompadreMat.R | 8 - tests/testthat/test-cdb_build_cdb.R | 2 tests/testthat/test-cdb_export_matlab.R |only tests/testthat/test-cdb_fetch.R | 12 +- tests/testthat/test-cdb_flatten.R | 5 tests/testthat/test-cdb_rbind.R | 37 +++++++ tests/testthat/test-mpm_median.R | 3 tests/testthat/test-mpm_sd.R | 1 tests/testthat/test-string_representation.R | 8 + vignettes/a01_GettingStarted.Rmd | 20 +++ vignettes/a02_RcompadreTidy.Rmd | 37 +++++-- vignettes/a03_VectorisingRcompadre.Rmd | 22 +++- vignettes/a04_ObtainingReferences.Rmd | 30 ++++- 73 files changed, 914 insertions(+), 504 deletions(-)
Title: Quality Report Generation for MaxQuant and mzTab Results
Description: Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015)
<doi:10.1021/acs.jproteome.5b00780>.
Author: Chris Bielow [aut, cre],
Juliane Schmachtenberg [ctb],
Swenja Wagner [ctb],
Patricia Scheil [ctb],
Tom Waschischek [ctb],
Guido Mastrobuoni [dtc, rev]
Maintainer: Chris Bielow <chris.bielow@bsc.fu-berlin.de>
Diff between PTXQC versions 1.1.4 dated 2026-02-18 and 1.1.5 dated 2026-04-23
DESCRIPTION | 8 MD5 | 30 NEWS | 2 R/FilenameMapper.R | 730 ++++++++++---------- R/MQDataReader.R | 1015 ++++++++++++++-------------- README.md | 11 inst/doc/PTXQC-Basic_Guide_for_R_users.html | 4 inst/doc/PTXQC-CustomizeReport.html | 4 inst/doc/PTXQC-DragNDrop.html | 4 inst/doc/PTXQC-FAQ.html | 4 inst/doc/PTXQC-Input_And_Output_Data.Rmd | 3 inst/doc/PTXQC-Input_And_Output_Data.html | 7 inst/doc/PTXQC-ListOfMetrics.html | 4 man/FilenameMapper-class.Rd | 2 man/MQDataReader-class.Rd | 18 vignettes/PTXQC-Input_And_Output_Data.Rmd | 3 16 files changed, 932 insertions(+), 917 deletions(-)
Title: Some Utilities for Developing Data Science Software
Description: A collection of general-purpose helper functions that I (and maybe
others) find useful when developing data science software. Includes tools
for simulation, data transformation, input validation, and more.
Author: Lennart Oelschlaeger [aut, cre]
Maintainer: Lennart Oelschlaeger <oelschlaeger.lennart@gmail.com>
Diff between oeli versions 0.7.5 dated 2025-08-18 and 0.7.6 dated 2026-04-23
DESCRIPTION | 11 MD5 | 364 ++-- NAMESPACE | 379 ++-- NEWS.md | 412 ++-- R/RcppExports.R | 182 +- R/catch-routine-registration.R | 12 R/check_correlation_matrix.R | 164 - R/check_covariance_matrix.R | 164 - R/check_list_of_lists.R | 104 - R/check_missing.R | 130 - R/check_numeric_vector.R | 136 - R/check_one_hot_matrix.R |only R/check_probability_vector.R | 124 - R/check_transition_probability_matrix.R | 144 - R/cholesky_root.R | 208 +- R/chunk_vector.R | 130 - R/correlated_regressors.R | 714 +++---- R/covariance_differencing.R | 306 +-- R/delete_columns_data.frame.R | 72 R/dictionary.R | 616 +++--- R/dirichlet.R | 136 - R/do.call_timed.R | 75 R/equidistant_vectors.R | 144 - R/find_namespace_calls.R | 224 +- R/function_arguments.R | 90 - R/function_body.R | 74 R/function_defaults.R | 78 R/gaussian_tv.R | 290 +-- R/group_data.frame.R | 73 R/hermannslauf.R |only R/identical_structure.R | 122 - R/input_check_response.R | 218 +- R/insert_matrix_column.R | 150 - R/insert_vector_entry.R | 102 - R/map_indices.R | 90 - R/match_arg.R | 128 - R/match_numerics.R | 92 - R/matrix_diagonal_indices.R | 110 - R/matrix_indices.R | 80 R/merge_lists.R | 66 R/mixnorm.R | 382 ++-- R/mvnorm.R | 426 ++-- R/occurrence_info.R | 124 - R/oeli-package.R | 182 +- R/package_logo.R | 230 +- R/permutations.R | 80 R/print_data.frame.R | 248 +- R/print_matrix.R | 318 +-- R/quiet.R | 122 - R/round_data.frame.R | 92 - R/sample_correlation_matrix.R | 84 R/sample_covariance_matrix.R | 64 R/sample_transition_probability_matrix.R | 56 R/simulate_markov_chain.R | 102 - R/simulator.R | 804 ++++---- R/split_vector_at.R | 94 - R/stationary_distribution.R | 90 - R/storage.R | 1170 ++++++------- R/subsets.R | 84 R/system_information.R | 122 - R/timed.R | 126 - R/tnorm.R | 200 +- R/try_silent.R | 66 R/unexpected_error.R | 76 R/user_confirm.R | 92 - R/variable_name.R | 72 R/vector_occurrence.R | 74 R/wishart.R | 154 - README.md | 455 ++--- data |only man/Dictionary.Rd | 456 ++--- man/Simulator.Rd | 432 ++-- man/Storage.Rd | 692 +++---- man/check_correlation_matrix.Rd | 137 - man/check_covariance_matrix.Rd | 137 - man/check_list_of_lists.Rd | 108 - man/check_numeric_vector.Rd | 294 +-- man/check_one_hot_matrix.Rd |only man/check_probability_vector.Rd | 134 - man/check_transition_probability_matrix.Rd | 151 - man/chunk_vector.Rd | 114 - man/correlated_regressors.Rd | 190 +- man/cov_to_chol.Rd | 1 man/ddirichlet.Rd | 136 - man/diff_cov.Rd | 221 +- man/dmixnorm.Rd | 200 +- man/dmvnorm.Rd | 218 +- man/do.call_timed.Rd | 90 - man/dtnorm.Rd | 180 +- man/dwishart.Rd | 168 - man/equidistant_vectors.Rd | 112 - man/function_arguments.Rd | 84 man/function_body.Rd | 84 man/function_defaults.Rd | 80 man/gaussian_tv.Rd | 178 - man/hermann.Rd |only man/identical_structure.Rd | 98 - man/input_check_response.Rd | 202 +- man/insert_matrix_column.Rd | 133 - man/insert_vector_entry.Rd | 118 - man/map_indices.Rd | 102 - man/match_arg.Rd | 102 - man/match_numerics.Rd | 80 man/matrix_diagonal_indices.Rd | 117 - man/matrix_indices.Rd | 93 - man/merge_lists.Rd | 56 man/oeli-package.Rd | 52 man/package_logo.Rd | 126 - man/permutations.Rd | 80 man/print_data.frame.Rd | 134 - man/print_matrix.Rd | 148 - man/sample_correlation_matrix.Rd | 95 - man/sample_covariance_matrix.Rd | 99 - man/sample_transition_probability_matrix.Rd | 83 man/simulate_markov_chain.Rd | 88 man/split_vector_at.Rd | 90 - man/stationary_distribution.Rd | 89 man/subsets.Rd | 84 man/system_information.Rd | 82 man/timed.Rd | 102 - man/try_silent.Rd | 82 man/unexpected_error.Rd | 84 man/user_confirm.Rd | 76 man/variable_name.Rd | 80 man/vector_occurrence.Rd | 92 - src/RcppExports.cpp | 28 tests/testthat.R | 24 tests/testthat/test-check_correlation_matrix.R | 142 - tests/testthat/test-check_covariance_matrix.R | 108 - tests/testthat/test-check_list_of_lists.R | 40 tests/testthat/test-check_missing.R | 40 tests/testthat/test-check_numeric_vector.R | 68 tests/testthat/test-check_one_hot_matrix.R |only tests/testthat/test-check_probability_vector.R | 66 tests/testthat/test-check_transition_probability_matrix.R | 132 - tests/testthat/test-cholesky_root.R | 28 tests/testthat/test-chunk_vector.R | 34 tests/testthat/test-correlated_regressors.R | 64 tests/testthat/test-covariance_differencing.R | 84 tests/testthat/test-cpp.R | 2 tests/testthat/test-delete_columns_data.frame.R | 36 tests/testthat/test-dictionary.R | 186 +- tests/testthat/test-dirichlet.R | 68 tests/testthat/test-do.call_timed.R | 26 tests/testthat/test-equidistant_vectors.R | 60 tests/testthat/test-function_arguments.R | 100 - tests/testthat/test-function_body.R | 40 tests/testthat/test-function_defaults.R | 22 tests/testthat/test-gaussian_tv.R | 84 tests/testthat/test-group_data.frame.R | 64 tests/testthat/test-identical_structure.R | 26 tests/testthat/test-input_check_response.R | 88 tests/testthat/test-insert_matrix_column.R | 96 - tests/testthat/test-insert_vector_entry.R | 56 tests/testthat/test-map_indices.R | 36 tests/testthat/test-match_arg.R | 68 tests/testthat/test-match_numerics.R | 12 tests/testthat/test-matrix_diagonal_indices.R | 10 tests/testthat/test-matrix_indices.R | 30 tests/testthat/test-merge_lists.R | 52 tests/testthat/test-mixnorm.R | 314 +-- tests/testthat/test-mvnorm.R | 258 +- tests/testthat/test-occurrence_info.R | 48 tests/testthat/test-package_logo.R | 26 tests/testthat/test-permutations.R | 26 tests/testthat/test-print_data.frame.R | 50 tests/testthat/test-print_matrix.R | 220 +- tests/testthat/test-quiet.R | 60 tests/testthat/test-round_data.frame.R | 36 tests/testthat/test-sample_correlation_matrix.R | 10 tests/testthat/test-sample_covariance_matrix.R | 16 tests/testthat/test-sample_transition_probability_matrix.R | 14 tests/testthat/test-simulate_markov_chain.R | 12 tests/testthat/test-simulator.R | 192 +- tests/testthat/test-split_vector_at.R | 60 tests/testthat/test-stationary_distribution.R | 48 tests/testthat/test-storage.R | 92 - tests/testthat/test-subsets.R | 46 tests/testthat/test-system_information.R | 14 tests/testthat/test-timed.R | 50 tests/testthat/test-tnorm.R | 162 - tests/testthat/test-try_silent.R | 8 tests/testthat/test-unexpected_error.R | 26 tests/testthat/test-variable_name.R | 34 tests/testthat/test-vector_occurrence.R | 10 tests/testthat/test-wishart.R | 70 186 files changed, 12174 insertions(+), 12115 deletions(-)
Title: Download Time Series Data from the U.S. Bureau of Labor
Statistics
Description: These functions provide a convenient interface for downloading data from the U.S. Bureau of Labor Statistics <https://www.bls.gov>. The functions in this package utilize flat files produced by the Bureau of Labor Statistics, which contain full series history. These files include employment, unemployment, wages, prices, industry and occupational data at a national, state, and sub-state level, depending on the series. Individual functions are included for those programs which have data available at the state level. The core functions provide direct access to the Current Employment Statistics (CES) <https://www.bls.gov/ces/>, Local Area Unemployment Statistics (LAUS) <https://www.bls.gov/lau/>, Occupational Employment and Wage Statistics (OEWS) <https://www.bls.gov/oes/> and Alternative Measures of Labor Underutilization (SALT) <https://www.bls.gov/lau/stalt.htm> data produced by the Bureau of Labor Statistics.
Author: Nevada Department of Employment, Training, and Rehabilitation [cph],
David Schmidt [aut, cre],
Mark Rembert [aut]
Maintainer: David Schmidt <deschmidt@detr.nv.gov>
Diff between BLSloadR versions 0.4 dated 2026-02-13 and 0.4.5 dated 2026-04-23
BLSloadR-0.4.5/BLSloadR/MD5 | 87 +++++++++++----------- BLSloadR-0.4.5/BLSloadR/R/bls_overview.R | 20 ----- BLSloadR-0.4.5/BLSloadR/R/download_helpers.R | 103 ++++++++++++++++++++++----- BLSloadR-0.4.5/BLSloadR/R/fread_BLS.R |only BLSloadR-0.4.5/BLSloadR/R/get_ces.R | 7 + BLSloadR-0.4.5/BLSloadR/R/get_jolts.R | 7 + BLSloadR-0.4.5/BLSloadR/R/get_laus.R | 7 + BLSloadR-0.4.5/BLSloadR/R/get_national_ces.R | 7 + BLSloadR-0.4.5/BLSloadR/R/get_oews.R | 27 ++----- BLSloadR-0.4.5/BLSloadR/R/get_salt.R | 49 +++--------- BLSloadR-0.4.5/BLSloadR/R/globals.R | 4 - BLSloadR-0.4.5/BLSloadR/R/load_bls_dataset.R | 25 +----- BLSloadR-0.4.5/BLSloadR/data/ind_lookup.rda |binary BLSloadR-0.4/BLSloadR/DESCRIPTION |only BLSloadR-0.4/BLSloadR/LICENSE |only BLSloadR-0.4/BLSloadR/NAMESPACE |only BLSloadR-0.4/BLSloadR/NEWS.md |only BLSloadR-0.4/BLSloadR/R/fread_bls.R |only BLSloadR-0.4/BLSloadR/README.md |only BLSloadR-0.4/BLSloadR/build |only BLSloadR-0.4/BLSloadR/data/area_lookup.rda |only BLSloadR-0.4/BLSloadR/inst |only BLSloadR-0.4/BLSloadR/man |only 23 files changed, 189 insertions(+), 154 deletions(-)
Title: A Collection of Statistical Tools for Biologists
Description: Contains functions from: Aho, K. (2014) Foundational and Applied Statistics for Biologists using R. CRC/Taylor and Francis, Boca Raton, FL, ISBN: 978-1-4398-7338-0.
Author: Ken Aho [aut, cre]
Maintainer: Ken Aho <kenaho1@gmail.com>
Diff between asbio versions 1.13 dated 2026-04-07 and 1.13-1 dated 2026-04-23
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ R/anm.LV.r | 6 ++++-- R/pairw.anova.R | 19 ++++++++++--------- inst/doc/ranefCov.pdf |binary inst/doc/simpson.pdf |binary inst/doc/typeISS_key.pdf |binary 7 files changed, 25 insertions(+), 22 deletions(-)
Title: Estimating Penalized AFT Models via Coordinate Descent
Description: Provides penalized accelerated failure time (AFT) model estimation
for right-censored and partly interval-censored survival data using induced
smoothing and coordinate descent algorithms. Supported penalties include
broken adaptive ridge (BAR), LASSO, adaptive LASSO, and SCAD. Core
estimation routines are implemented in 'C++' via 'Rcpp' and 'RcppArmadillo' for
computational efficiency. The methodology is related to Zeng and Lin (2008)
<doi:10.1093/biostatistics/kxm034>, Xu et al. (2010)
<doi:10.1002/sim.2576>, Dai et al. (2018)
<doi:10.1016/j.jmva.2018.08.007>, and Choi et al. (2025)
<doi:10.48550/arXiv.2503.11268>.
Author: Suyeon Seon [aut, cre],
Taehwa Choi [aut],
Dipankar Bandyopadhyay [aut],
Dongha Kim [aut],
Seongoh Park [aut]
Maintainer: Suyeon Seon <seonsy429@gmail.com>
Diff between aftPenCDA versions 0.1.0 dated 2026-04-07 and 0.1.1 dated 2026-04-23
DESCRIPTION | 10 ++- MD5 | 17 ++++-- R/data_simdat.R |only README.md | 30 ++++------- data |only inst/doc/aftPenCDA.R | 113 +++++-------------------------------------- inst/doc/aftPenCDA.Rmd | 118 ++++++--------------------------------------- inst/doc/aftPenCDA.html | 125 +++++++----------------------------------------- man/simdat_pic.Rd |only man/simdat_rc.Rd |only vignettes/aftPenCDA.Rmd | 118 ++++++--------------------------------------- 11 files changed, 101 insertions(+), 430 deletions(-)
Title: Hierarchical Partitioning of R2 for Spatial Simultaneous
Autoregressive Model
Description: Conducts hierarchical partitioning to calculate individual contributions of spatial and predictors (groups) towards total R2 for spatial simultaneous autoregressive model.
Author: Jiangshan Lai [aut, cre]
Maintainer: Jiangshan Lai <lai@njfu.edu.cn>
Diff between spatialreg.hp versions 0.0-1 dated 2025-08-27 and 0.0-2 dated 2026-04-23
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/zzz.R | 2 +- inst/CITATION | 18 +++++++++--------- 4 files changed, 17 insertions(+), 17 deletions(-)