Title: Utility Functions for Plotting
Description: Provides utility functions for plotting. Includes functions for color manipulation, plot customization, panel size control, data optimization for plots, and layout adjustments.
Author: Meng Xu [aut, cre]
Maintainer: Meng Xu <mengxu98@qq.com>
Diff between thisplot versions 0.3.7 dated 2026-04-02 and 0.3.8 dated 2026-04-24
DESCRIPTION | 13 MD5 | 39 - NAMESPACE | 4 NEWS.md | 22 R/StatPlot.R | 23 R/chinese_colors.R | 5 R/data.R | 3 R/palettes.R | 18 R/plot.R | 222 +++++++ R/reexports.R | 5 R/utils.R | 23 R/visual_colors.R | 184 +++++- README.md | 1104 +++++++++++++++++++-------------------- data/chinese_colors.rda |binary man/ChineseColors.Rd | 2 man/StatPlot.Rd | 13 man/annotate_quadrants.Rd |only man/chinese_colors.Rd | 3 man/clip_symmetric_range.Rd |only man/jitter_highlighted_points.Rd |only man/normalize_to_sum.Rd |only man/to_percent.Rd |only man/visual_colors.Rd | 12 23 files changed, 1076 insertions(+), 619 deletions(-)
Title: A Blazing Fast Implementation of Random Forest
Description: Yet another implementation of the Random Forest method by Breiman (2001) <doi:10.1023/A:1010933404324>, written in Rust and tailored towards stability, correctness, efficiency and scalability on modern multi-core machines.
Handles both classification and regression, as well as provides permutation feature importance via a novel, highly optimised algorithm.
Author: Miron Bartosz Kursa [aut, cre] ,
Krzysztof Piotr Piwonski [aut]
Maintainer: Miron Bartosz Kursa <m@mbq.me>
Diff between fru versions 0.0.5 dated 2026-04-03 and 0.0.6 dated 2026-04-24
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ inst/NEWS | 4 ++++ src/fru/Cargo.lock | 4 ++-- src/fru/vendor.tar.xz |only src/xrf/Cargo.lock | 2 +- src/xrf/Cargo.toml | 2 +- src/xrf/src/forest.rs | 8 ++++---- 8 files changed, 22 insertions(+), 17 deletions(-)
Title: Automatic Univariate Time Series Modelling of many Kinds
Description: Comprehensive analysis and forecasting
of univariate time series using automatic
time series models of many kinds.
Harvey AC (1989) <doi:10.1017/CBO9781107049994>.
Pedregal DJ and Young PC (2002) <doi:10.1002/9780470996430>.
Durbin J and Koopman SJ (2012) <doi:10.1093/acprof:oso/9780199641178.001.0001>.
Hyndman RJ, Koehler AB, Ord JK, and Snyder RD (2008) <doi:10.1007/978-3-540-71918-2>.
Gómez V, Maravall A (2000) <doi:10.1002/9781118032978>.
Pedregal DJ, Trapero JR and Holgado E (2024) <doi:10.1016/j.ijforecast.2023.09.004>.
Author: Diego J. Pedregal [aut, cre]
Maintainer: Diego J. Pedregal <diego.pedregal@uclm.es>
Diff between UComp versions 5.1.9 dated 2026-04-08 and 5.2 dated 2026-04-24
ChangeLog | 2 +- DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- src/BSMmodel.h | 7 +------ src/stats.h | 3 ++- 5 files changed, 12 insertions(+), 16 deletions(-)
Title: Pan-European Phenological Data Analysis
Description: Provides a framework for quality-aware analysis of ground-based
phenological data from the PEP725 Pan-European Phenology Database
(Templ et al. (2018) <doi:10.1007/s00484-018-1512-8>;
Templ et al. (2026) <doi:10.1111/nph.70869>) and similar observation
networks. Implements station-level data quality grading, outlier
detection, phenological normals (climate baselines), anomaly detection,
elevation and latitude gradient estimation with robust regression,
spatial synchrony quantification, partial least squares (PLS) regression
for identifying temperature-sensitive periods, and sequential
Mann-Kendall trend analysis. Supports data import from PEP725 files,
conversion of user-supplied data, and downloadable synthetic datasets
for teaching without barriers of registration.
All analysis outputs provide 'print', 'summary', and
'plot' methods. Interactive spatial visualization is available via
'leaflet'.
Author: Matthias Templ [aut, cre] ,
Barbara Templ [aut]
Maintainer: Matthias Templ <matthias.templ@gmail.com>
Diff between pep725 versions 1.0.2 dated 2026-03-31 and 1.1.0 dated 2026-04-24
DESCRIPTION | 11 MD5 | 88 +- NAMESPACE | 2 NEWS.md | 99 ++ R/calc_daylength.R | 61 + R/calc_thermal_units.R | 34 R/data_documentation.R | 2 R/pep_flag_outliers.R | 217 ++++ R/pep_outliers_leaflet.R |only R/pep_plot_outliers.R | 281 ++++++ R/pheno_combine.R | 7 R/pheno_map.R | 6 R/pheno_normals.R | 160 ++- R/pheno_timeseries.R | 4 R/pheno_trend_turning.R | 217 +++- README.md | 4 inst/doc/data-quality.R | 41 inst/doc/data-quality.Rmd | 160 +++ inst/doc/data-quality.html | 874 ++++++++++++-------- inst/doc/getting-started.Rmd | 6 inst/doc/getting-started.html | 12 inst/doc/phenological-analysis.R | 12 inst/doc/phenological-analysis.Rmd | 14 inst/doc/phenological-analysis.html | 79 - inst/doc/spatial-patterns.html | 34 man/calc_daylength.Rd | 40 man/calc_thermal_units.Rd | 19 man/kendall_tau.Rd | 27 man/mann_kendall_z.Rd |only man/pep_flag_outliers.Rd | 46 + man/pep_outliers_leaflet.Rd |only man/pep_plot_outliers.Rd | 20 man/pep_seed.Rd | 2 man/pheno_map.Rd | 2 man/pheno_normals.Rd | 8 man/sequential_mk.Rd | 40 tests/testthat/test-calc_daylength_method.R |only tests/testthat/test-calc_thermal_units.R | 66 + tests/testthat/test-kendall_tau.R | 68 + tests/testthat/test-pep_flag_outliers_gam.R |only tests/testthat/test-pep_flag_outliers_mahalanobis.R |only tests/testthat/test-pep_outliers_leaflet.R |only tests/testthat/test-pheno_normals.R | 47 + tests/testthat/test-pheno_plot_timeseries.R |only tests/testthat/test-sequential_mk.R |only vignettes/data-quality.Rmd | 160 +++ vignettes/figures |only vignettes/getting-started.Rmd | 6 vignettes/phenological-analysis.Rmd | 14 49 files changed, 2316 insertions(+), 674 deletions(-)
Title: Compute SHAP Values for Your Tree-Based Models Using the
'TreeSHAP' Algorithm
Description: An efficient implementation of the 'TreeSHAP' algorithm
introduced by Lundberg et al., (2020) <doi:10.1038/s42256-019-0138-9>.
It is capable of calculating SHAP (SHapley Additive exPlanations) values
for tree-based models in polynomial time. Currently supported models include
'gbm', 'randomForest', 'ranger', 'xgboost', 'lightgbm'.
Author: Michael Mayer [aut, cre],
Konrad Komisarczyk [aut],
Pawel Kozminski [aut],
Szymon Maksymiuk [aut] ,
Lorenz A. Kapsner [ctb] ,
Mikolaj Spytek [ctb] ,
Mateusz Krzyzinski [ctb] ,
Przemyslaw Biecek [aut, cph]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
This is a re-admission after prior archival of version 0.3.1 dated 2024-01-22
Diff between treeshap versions 0.3.1 dated 2024-01-22 and 0.4.0 dated 2026-04-24
treeshap-0.3.1/treeshap/R/globals.R |only treeshap-0.4.0/treeshap/DESCRIPTION | 35 - treeshap-0.4.0/treeshap/MD5 | 109 +-- treeshap-0.4.0/treeshap/NAMESPACE | 88 +- treeshap-0.4.0/treeshap/NEWS.md |only treeshap-0.4.0/treeshap/R/RcppExports.R | 38 - treeshap-0.4.0/treeshap/R/fifa20.R | 46 - treeshap-0.4.0/treeshap/R/model_unified.R | 242 +++---- treeshap-0.4.0/treeshap/R/plot_contribution.R | 40 - treeshap-0.4.0/treeshap/R/plot_feature_dependence.R | 37 - treeshap-0.4.0/treeshap/R/plot_feature_importance.R | 36 - treeshap-0.4.0/treeshap/R/plot_interaction.R | 32 treeshap-0.4.0/treeshap/R/predict.R | 146 ++-- treeshap-0.4.0/treeshap/R/set_reference_dataset.R | 195 ++--- treeshap-0.4.0/treeshap/R/theme_drwhy.R | 174 +++-- treeshap-0.4.0/treeshap/R/treeshap.R | 71 +- treeshap-0.4.0/treeshap/R/unify.R | 184 +++-- treeshap-0.4.0/treeshap/R/unify_gbm.R | 187 ++--- treeshap-0.4.0/treeshap/R/unify_gpboost.R |only treeshap-0.4.0/treeshap/R/unify_lightgbm.R | 107 ++- treeshap-0.4.0/treeshap/R/unify_randomForest.R | 234 ++++-- treeshap-0.4.0/treeshap/R/unify_ranger.R | 177 ++--- treeshap-0.4.0/treeshap/R/unify_ranger_surv.R | 337 ++++------ treeshap-0.4.0/treeshap/R/unify_xgboost.R | 105 ++- treeshap-0.4.0/treeshap/R/zzz.R |only treeshap-0.4.0/treeshap/man/colors_drwhy.Rd | 40 - treeshap-0.4.0/treeshap/man/fifa20.Rd | 64 - treeshap-0.4.0/treeshap/man/gbm.unify.Rd | 95 +- treeshap-0.4.0/treeshap/man/gpboost.unify.Rd |only treeshap-0.4.0/treeshap/man/is.model_unified.Rd | 34 - treeshap-0.4.0/treeshap/man/is.treeshap.Rd | 34 - treeshap-0.4.0/treeshap/man/lightgbm.unify.Rd | 102 +-- treeshap-0.4.0/treeshap/man/model_unified.object.Rd | 66 - treeshap-0.4.0/treeshap/man/model_unified_multioutput.object.Rd | 28 treeshap-0.4.0/treeshap/man/plot_contribution.Rd | 130 ++- treeshap-0.4.0/treeshap/man/plot_feature_dependence.Rd | 101 +- treeshap-0.4.0/treeshap/man/plot_feature_importance.Rd | 105 +-- treeshap-0.4.0/treeshap/man/plot_interaction.Rd | 104 +-- treeshap-0.4.0/treeshap/man/predict.model_unified.Rd | 76 +- treeshap-0.4.0/treeshap/man/print.model_unified.Rd | 38 - treeshap-0.4.0/treeshap/man/print.model_unified_multioutput.Rd | 38 - treeshap-0.4.0/treeshap/man/print.treeshap.Rd | 38 - treeshap-0.4.0/treeshap/man/print.treeshap_multioutput.Rd | 38 - treeshap-0.4.0/treeshap/man/randomForest.unify.Rd | 110 +-- treeshap-0.4.0/treeshap/man/ranger.unify.Rd | 87 +- treeshap-0.4.0/treeshap/man/ranger_surv.unify.Rd | 183 ++--- treeshap-0.4.0/treeshap/man/set_reference_dataset.Rd | 101 +- treeshap-0.4.0/treeshap/man/theme_drwhy.Rd | 34 - treeshap-0.4.0/treeshap/man/treeshap.Rd | 134 ++- treeshap-0.4.0/treeshap/man/treeshap.object.Rd | 44 - treeshap-0.4.0/treeshap/man/treeshap_multioutput.object.Rd | 32 treeshap-0.4.0/treeshap/man/unify.Rd | 124 ++- treeshap-0.4.0/treeshap/man/xgboost.unify.Rd | 96 +- treeshap-0.4.0/treeshap/tests |only 54 files changed, 2541 insertions(+), 2155 deletions(-)
Title: Cubature over Polygonal Domains
Description: Numerical integration of continuously differentiable
functions f(x,y) over simple closed polygonal domains.
The following cubature methods are implemented:
product Gauss cubature (Sommariva and Vianello, 2007,
<doi:10.1007/s10543-007-0131-2>),
the simple two-dimensional midpoint rule
(wrapping 'spatstat.geom' functions), and
adaptive cubature for radially symmetric functions via line
integrate() along the polygon boundary (Meyer and Held, 2014,
<doi:10.1214/14-AOAS743>, Supplement B).
For simple integration along the axes, the 'cubature' package
is more appropriate.
Author: Sebastian Meyer [aut, cre, trl] ,
Leonhard Held [ths],
Michael Hoehle [ths]
Maintainer: Sebastian Meyer <seb.meyer@fau.de>
Diff between polyCub versions 0.9.3 dated 2026-04-11 and 0.9.4 dated 2026-04-24
polyCub-0.9.3/polyCub/man/gpclibPermit.Rd |only polyCub-0.9.4/polyCub/DESCRIPTION | 8 +-- polyCub-0.9.4/polyCub/MD5 | 61 +++++++++++------------ polyCub-0.9.4/polyCub/NAMESPACE | 2 polyCub-0.9.4/polyCub/NEWS.md | 20 ++++--- polyCub-0.9.4/polyCub/R/circleCub.R | 11 ++-- polyCub-0.9.4/polyCub/R/coerce-sp-methods.R | 20 +++---- polyCub-0.9.4/polyCub/R/plotpolyf.R | 4 - polyCub-0.9.4/polyCub/R/polyCub.R | 2 polyCub-0.9.4/polyCub/R/polyCub.SV.R | 2 polyCub-0.9.4/polyCub/R/polyCub.exact.Gauss.R | 20 +++---- polyCub-0.9.4/polyCub/R/polyCub.iso.R | 41 +++++++++------ polyCub-0.9.4/polyCub/R/polyCub.midpoint.R | 2 polyCub-0.9.4/polyCub/R/xylist.R | 6 +- polyCub-0.9.4/polyCub/R/zzz.R | 41 +++------------ polyCub-0.9.4/polyCub/build/partial.rdb |binary polyCub-0.9.4/polyCub/inst/CITATION | 5 - polyCub-0.9.4/polyCub/inst/REFERENCES.R | 29 +++++----- polyCub-0.9.4/polyCub/inst/doc/polyCub.Rmd | 3 - polyCub-0.9.4/polyCub/inst/doc/polyCub.html | 14 ++--- polyCub-0.9.4/polyCub/man/checkintrfr.Rd | 29 +++++++--- polyCub-0.9.4/polyCub/man/circleCub.Gauss.Rd | 9 ++- polyCub-0.9.4/polyCub/man/coerce-sp-methods.Rd | 27 +++++----- polyCub-0.9.4/polyCub/man/plotpolyf.Rd | 4 - polyCub-0.9.4/polyCub/man/polyCub-package.Rd | 16 +++--- polyCub-0.9.4/polyCub/man/polyCub.Rd | 5 - polyCub-0.9.4/polyCub/man/polyCub.SV.Rd | 5 - polyCub-0.9.4/polyCub/man/polyCub.exact.Gauss.Rd | 26 --------- polyCub-0.9.4/polyCub/man/polyCub.iso.Rd | 13 ++-- polyCub-0.9.4/polyCub/man/polyCub.midpoint.Rd | 5 - polyCub-0.9.4/polyCub/man/xylist.Rd | 11 ++++ polyCub-0.9.4/polyCub/vignettes/polyCub.Rmd | 3 - 32 files changed, 220 insertions(+), 224 deletions(-)
Title: Manipulation of Microsoft Word and PowerPoint Documents
Description: Access and manipulate 'Microsoft Word', 'RTF' and 'Microsoft
PowerPoint' documents from R. The package focuses on tabular and
graphical reporting from R; it also provides two functions that let
users get document content into data objects. A set of functions lets
add and remove images, tables and paragraphs of text in new or
existing documents. The package does not require any installation of
Microsoft products to be able to write Microsoft files.
Author: David Gohel [aut, cre],
Stefan Moog [aut],
Mark Heckmann [aut] ,
ArData [cph],
Frank Hangler [ctb] ,
Liz Sander [ctb] ,
Anton Victorson [ctb] ,
Jon Calder [ctb] ,
John Harrold [ctb] ,
John Muschelli [ctb] ,
Bill Denney [ctb] ,
Nikolai Beck [ctb] ,
Gr [...truncated...]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between officer versions 0.7.3 dated 2026-01-16 and 0.7.4 dated 2026-04-24
officer-0.7.3/officer/inst/examples |only officer-0.7.4/officer/DESCRIPTION | 18 officer-0.7.4/officer/MD5 | 175 - officer-0.7.4/officer/NAMESPACE | 22 officer-0.7.4/officer/NEWS.md | 47 officer-0.7.4/officer/R/core_properties.R | 2 officer-0.7.4/officer/R/defunct.R | 2 officer-0.7.4/officer/R/dev-utils.R | 4 officer-0.7.4/officer/R/docx_add.R | 65 officer-0.7.4/officer/R/docx_append_context.R | 8 officer-0.7.4/officer/R/docx_comments.R | 2 officer-0.7.4/officer/R/docx_embed_font.R |only officer-0.7.4/officer/R/docx_section.R | 17 officer-0.7.4/officer/R/docx_settings.R | 120 - officer-0.7.4/officer/R/docx_styles.R | 6 officer-0.7.4/officer/R/docx_write.R | 84 officer-0.7.4/officer/R/formatting_properties.R | 40 officer-0.7.4/officer/R/fortify_pptx.R | 40 officer-0.7.4/officer/R/ooxml.R | 46 officer-0.7.4/officer/R/ooxml_block_objects.R | 191 + officer-0.7.4/officer/R/ooxml_run_objects.R | 12 officer-0.7.4/officer/R/pack_folder.R | 4 officer-0.7.4/officer/R/ph_location.R | 5 officer-0.7.4/officer/R/post-proc.R | 137 + officer-0.7.4/officer/R/ppt_notes.R | 2 officer-0.7.4/officer/R/ppt_ph_dedupe_layout.R | 9 officer-0.7.4/officer/R/ppt_ph_with_methods.R | 37 officer-0.7.4/officer/R/pptx_informations.R | 20 officer-0.7.4/officer/R/pptx_layout_helper.R | 7 officer-0.7.4/officer/R/read_xlsx.R | 1473 +++++++++++++- officer-0.7.4/officer/R/relationship.R | 2 officer-0.7.4/officer/R/rtf.R | 14 officer-0.7.4/officer/R/utils.R | 54 officer-0.7.4/officer/man/add_sheet.Rd | 7 officer-0.7.4/officer/man/block_caption.Rd | 2 officer-0.7.4/officer/man/block_gg.Rd | 2 officer-0.7.4/officer/man/block_list.Rd | 2 officer-0.7.4/officer/man/block_list_items.Rd |only officer-0.7.4/officer/man/block_pour_docx.Rd | 2 officer-0.7.4/officer/man/block_section.Rd | 2 officer-0.7.4/officer/man/block_table.Rd | 2 officer-0.7.4/officer/man/block_toc.Rd | 2 officer-0.7.4/officer/man/body_add.Rd | 5 officer-0.7.4/officer/man/body_add_blocks.Rd | 1 officer-0.7.4/officer/man/body_add_break.Rd | 1 officer-0.7.4/officer/man/body_add_caption.Rd | 1 officer-0.7.4/officer/man/body_add_docx.Rd | 1 officer-0.7.4/officer/man/body_add_fpar.Rd | 1 officer-0.7.4/officer/man/body_add_gg.Rd | 1 officer-0.7.4/officer/man/body_add_img.Rd | 1 officer-0.7.4/officer/man/body_add_list.Rd |only officer-0.7.4/officer/man/body_add_par.Rd | 1 officer-0.7.4/officer/man/body_add_plot.Rd | 1 officer-0.7.4/officer/man/body_add_table.Rd | 1 officer-0.7.4/officer/man/body_add_toc.Rd | 1 officer-0.7.4/officer/man/body_append_context.Rd | 1 officer-0.7.4/officer/man/body_import_docx.Rd | 1 officer-0.7.4/officer/man/docx_embed_font.Rd |only officer-0.7.4/officer/man/fp_par.Rd | 16 officer-0.7.4/officer/man/fpar.Rd | 2 officer-0.7.4/officer/man/list_item.Rd |only officer-0.7.4/officer/man/ph_with.Rd | 6 officer-0.7.4/officer/man/plot_instr.Rd | 2 officer-0.7.4/officer/man/plot_layout_properties.Rd | 2 officer-0.7.4/officer/man/sheet_add_drawing.Rd |only officer-0.7.4/officer/man/sheet_names.Rd |only officer-0.7.4/officer/man/sheet_remove.Rd |only officer-0.7.4/officer/man/sheet_write_data.Rd |only officer-0.7.4/officer/man/unordered_list.Rd | 6 officer-0.7.4/officer/man/xlsx_drawing.Rd |only officer-0.7.4/officer/man/xlsx_styles.Rd |only officer-0.7.4/officer/tests/testthat/test-block_list.R | 198 + officer-0.7.4/officer/tests/testthat/test-docx_settings.R | 137 + officer-0.7.4/officer/tests/testthat/test-fp_par.R | 76 officer-0.7.4/officer/tests/testthat/test-xlsx.R | 782 +++++++ 75 files changed, 3617 insertions(+), 314 deletions(-)
Title: Historical and Ahistorical Population Projection Matrix Analysis
Description: Complete analytical environment for the construction and analysis
of matrix population models and integral projection models.
Includes the ability to construct historical matrices, which are
2d matrices comprising 3 consecutive times of demographic
information. Estimates both raw and function-based forms of
historical and standard ahistorical matrices. It also estimates
function-based age-by-stage matrices and raw and function-based
Leslie matrices.
Author: Richard P. Shefferson [aut, cre] ,
Johan Ehrlen [aut]
Maintainer: Richard P. Shefferson <cdorm@g.ecc.u-tokyo.ac.jp>
Diff between lefko3 versions 6.7.2 dated 2026-02-11 and 6.7.3 dated 2026-04-24
DESCRIPTION | 8 MD5 | 36 ++-- NEWS.md | 23 ++ R/RcppExports.R | 12 + R/popchar.R | 11 - build/vignette.rds |binary inst/doc/Chapter1.html | 284 ++++++++++++++++------------------ inst/doc/Chapter2.html | 28 +-- inst/doc/Chapter5.html | 25 +- inst/doc/Chapter6.html | 3 inst/doc/Chapter8.html | 20 +- inst/doc/Chapter9.html | 17 -- inst/include/basic_funcs/main_utils.h | 152 ++++++++++-------- man/bootstrap3.Rd | 3 man/lambda3.Rd | 8 src/DataManagement.cpp | 180 ++++++++++++++++++++- src/MatsNProj.cpp | 24 ++ src/PopDyn2.cpp | 71 ++++++++ src/RcppExports.cpp | 9 - 19 files changed, 609 insertions(+), 305 deletions(-)
Title: Simulation and Analysis of Event History Data
Description: Simulate event history data from a framework where treatment decisions
and disease progression are represented as counting process. The user can specify
number of events and parameters of intensities thereby creating a flexible
simulation framework.
Author: Michaela Lukacova [aut, cre]
Maintainer: Michaela Lukacova <michaela.lukacova@sund.ku.dk>
Diff between simevent versions 0.1.0 dated 2026-02-11 and 0.1.1 dated 2026-04-24
simevent-0.1.0/simevent/R/alphaSimDisease.R |only simevent-0.1.0/simevent/R/alphaSimDropIn.R |only simevent-0.1.0/simevent/R/alphaSimTreat.R |only simevent-0.1.0/simevent/R/intEffectAlphaDisease.R |only simevent-0.1.0/simevent/R/intEffectAlphaDropIn.R |only simevent-0.1.0/simevent/R/intEffectAlphaTreat.R |only simevent-0.1.0/simevent/man/alphaSimDisease.Rd |only simevent-0.1.0/simevent/man/alphaSimDropIn.Rd |only simevent-0.1.0/simevent/man/alphaSimTreat.Rd |only simevent-0.1.0/simevent/man/intEffectAlphaDisease.Rd |only simevent-0.1.0/simevent/man/intEffectAlphaDropIn.Rd |only simevent-0.1.0/simevent/man/intEffectAlphaTreat.Rd |only simevent-0.1.1/simevent/DESCRIPTION | 6 simevent-0.1.1/simevent/MD5 | 62 +++---- simevent-0.1.1/simevent/NAMESPACE | 9 - simevent-0.1.1/simevent/NEWS.md |only simevent-0.1.1/simevent/R/alphaSim.R |only simevent-0.1.1/simevent/R/intEffectAlpha.R |only simevent-0.1.1/simevent/R/simEventCox.R | 40 +++- simevent-0.1.1/simevent/R/simEventData.R | 29 ++- simevent-0.1.1/simevent/R/simEventObj.R | 4 simevent-0.1.1/simevent/R/simStatinData.R |only simevent-0.1.1/simevent/README.md | 83 +++++----- simevent-0.1.1/simevent/man/alphaSim.Rd |only simevent-0.1.1/simevent/man/figures/README-unnamed-chunk-18-1.png |binary simevent-0.1.1/simevent/man/figures/README-unnamed-chunk-20-1.png |binary simevent-0.1.1/simevent/man/figures/README-unnamed-chunk-21-1.png |binary simevent-0.1.1/simevent/man/figures/README-unnamed-chunk-22-1.png |binary simevent-0.1.1/simevent/man/figures/README-unnamed-chunk-23-1.png |binary simevent-0.1.1/simevent/man/figures/README-unnamed-chunk-24-1.png |binary simevent-0.1.1/simevent/man/figures/README-unnamed-chunk-25-1.png |binary simevent-0.1.1/simevent/man/figures/README-unnamed-chunk-26-1.png |binary simevent-0.1.1/simevent/man/figures/README-unnamed-chunk-27-1.png |binary simevent-0.1.1/simevent/man/figures/README-unnamed-chunk-28-1.png |binary simevent-0.1.1/simevent/man/figures/README-unnamed-chunk-29-1.png |only simevent-0.1.1/simevent/man/intEffectAlpha.Rd |only simevent-0.1.1/simevent/man/simEventCox.Rd | 21 +- simevent-0.1.1/simevent/man/simEventData.Rd | 3 simevent-0.1.1/simevent/man/simEventObj.Rd | 4 simevent-0.1.1/simevent/man/simStatinData.Rd |only simevent-0.1.1/simevent/tests/testthat/test-override_beta.R | 63 +++---- simevent-0.1.1/simevent/tests/testthat/test-simEventCox.R | 16 + 42 files changed, 191 insertions(+), 149 deletions(-)
Title: Statistical Entropy Analysis of Network Data
Description: Statistical entropy analysis of network data as introduced by Frank and Shafie (2016) <doi:10.1177/0759106315615511>, and a in textbook which is in progress.
Author: Termeh Shafie [aut, cre]
Maintainer: Termeh Shafie <termeh.shafie@uni-konstanz.de>
Diff between netropy versions 0.2.0 dated 2024-09-06 and 0.3.0 dated 2026-04-24
netropy-0.2.0/netropy/vignettes/predplot-status.png |only netropy-0.3.0/netropy/DESCRIPTION | 6 netropy-0.3.0/netropy/MD5 | 58 - netropy-0.3.0/netropy/NAMESPACE | 3 netropy-0.3.0/netropy/NEWS.md | 4 netropy-0.3.0/netropy/R/div_gof.R | 361 ++++++---- netropy-0.3.0/netropy/R/entropy_tetravar.R |only netropy-0.3.0/netropy/R/entropy_trivar.R | 144 +-- netropy-0.3.0/netropy/R/make_pred_plot.R |only netropy-0.3.0/netropy/R/prediction_power.R | 6 netropy-0.3.0/netropy/build/vignette.rds |binary netropy-0.3.0/netropy/inst/doc/div_gof.R | 139 ++- netropy-0.3.0/netropy/inst/doc/div_gof.Rmd | 183 +++-- netropy-0.3.0/netropy/inst/doc/div_gof.html | 117 ++- netropy-0.3.0/netropy/inst/doc/joint_entropies.html | 5 netropy-0.3.0/netropy/inst/doc/make_pred_plot.R |only netropy-0.3.0/netropy/inst/doc/make_pred_plot.Rmd |only netropy-0.3.0/netropy/inst/doc/make_pred_plot.html |only netropy-0.3.0/netropy/inst/doc/prediction_power.R | 5 netropy-0.3.0/netropy/inst/doc/prediction_power.Rmd | 8 netropy-0.3.0/netropy/inst/doc/prediction_power.html | 16 netropy-0.3.0/netropy/inst/doc/univariate_bivariate_trivariate.R | 5 netropy-0.3.0/netropy/inst/doc/univariate_bivariate_trivariate.Rmd | 36 netropy-0.3.0/netropy/inst/doc/univariate_bivariate_trivariate.html | 323 +++++--- netropy-0.3.0/netropy/inst/doc/variable_domains.html | 3 netropy-0.3.0/netropy/man/div_gof.Rd | 181 +++-- netropy-0.3.0/netropy/man/entropy_tetravar.Rd |only netropy-0.3.0/netropy/man/entropy_trivar.Rd | 56 - netropy-0.3.0/netropy/man/make_pred_plot.Rd |only netropy-0.3.0/netropy/tests/testthat/test-entropy_tetravar.R |only netropy-0.3.0/netropy/tests/testthat/test-entropy_trivar.R | 2 netropy-0.3.0/netropy/vignettes/div_gof.Rmd | 183 +++-- netropy-0.3.0/netropy/vignettes/make_pred_plot.Rmd |only netropy-0.3.0/netropy/vignettes/prediction_power.Rmd | 8 netropy-0.3.0/netropy/vignettes/univariate_bivariate_trivariate.Rmd | 36 35 files changed, 1222 insertions(+), 666 deletions(-)
Title: Noncompartmental Analysis for Pharmacokinetic Report
Description: Conduct a noncompartmental analysis with industrial strength.
Some features are
1) CDISC SDTM terms
2) Automatic or manual slope selection
3) Supporting both 'linear-up linear-down' and 'linear-up log-down' method
4) Interval(partial) AUCs with 'linear' or 'log' interpolation method
5) Produce pdf, rtf, text report files.
* Reference: Gabrielsson J, Weiner D. Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications. 5th ed. 2016. (ISBN:9198299107).
Author: Kyun-Seop Bae [aut, cre]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between ncar versions 0.5.1 dated 2026-03-26 and 0.6.0 dated 2026-04-24
DESCRIPTION | 11 +-- MD5 | 24 +++---- NAMESPACE | 16 ++-- R/BasicUtil.R | 4 - R/Res2Txt.R | 1 R/pdfNCA.R | 194 +++++++++++++++++++++++++++++---------------------------- R/rtfNCA.R | 153 +++++++++++++++++++++++--------------------- R/txtNCA.R | 13 +-- inst/NEWS.Rd | 5 + man/Res2Txt.Rd | 2 man/pdfNCA.Rd | 3 man/rtfNCA.Rd | 3 man/txtNCA.Rd | 3 13 files changed, 229 insertions(+), 203 deletions(-)
Title: Determines Species Probabilities Based on Functional Traits
Description: The objective of these functions is to derive a species assemblage
that satisfies a functional trait profile. Restoring resilient ecosystems
requires a flexible framework for selecting assemblages that are based on the
functional traits of species. However, current trait-based models have been
limited to algorithms that can only select species by optimising specific trait
values, and could not elegantly accommodate the common desire among restoration
ecologists to produce functionally diverse assemblages. We have solved this
problem by applying a non-linear optimisation algorithm that optimises Rao Q,
a closed-form functional trait diversity index that incorporates species
abundances, subject to other linear constraints. This framework generalises
previous models that only optimised the entropy of the community, and can
optimise both functional diversity and entropy simultaneously. This package
can also be used to generate experimental assemblages to test the effects
of community-level [...truncated...]
Author: Daniel Laughlin [cre, aut],
Loic Chalmandrier [aut]
Maintainer: Daniel Laughlin <danielclaughlin@gmail.com>
Diff between Select versions 1.5 dated 2026-02-23 and 1.6 dated 2026-04-24
DESCRIPTION | 8 MD5 | 10 - R/selectSpecies.R | 429 ++++++++++++++++++++++---------------------- inst/doc/selectSpecies.Rmd | 2 inst/doc/selectSpecies.html | 4 vignettes/selectSpecies.Rmd | 2 6 files changed, 232 insertions(+), 223 deletions(-)
Title: Noncompartmental Analysis for Pharmacokinetic Data
Description: Conduct a noncompartmental analysis with industrial strength.
Some features are
1) Use of CDISC SDTM terms
2) Automatic or manual slope selection
3) Supporting both 'linear-up linear-down' and 'linear-up log-down' method
4) Interval(partial) AUCs with 'linear' or 'log' interpolation method
* Reference: Gabrielsson J, Weiner D. Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications. 5th ed. 2016. (ISBN:9198299107).
Author: Kyun-Seop Bae [aut, cre]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between NonCompart versions 0.7.2 dated 2026-03-27 and 0.8.0 dated 2026-04-24
DESCRIPTION | 8 +++---- MD5 | 22 ++++++++++---------- R/BestSlope.R | 28 +++++++++++++------------- R/DetSlope.R | 2 - R/Slope.R | 18 ++++++++-------- R/sNCA.R | 58 ++++++++++++++++++++++++++++++------------------------ R/tblNCA.R | 20 ++++++++++++++---- inst/NEWS.Rd | 5 ++++ man/gInterpol.Rd | 2 - man/sNCA.Rd | 5 +++- man/tblAUC.Rd | 2 - man/tblNCA.Rd | 59 +++++++++++++++++++++++++++++++++++++++++++++++++++---- 12 files changed, 154 insertions(+), 75 deletions(-)
Title: Cell Type-Specific Expression Quantitative Trait Loci Mapping
Description: Perform bulk and cell type-specific expression quantitative trait loci mapping with our novel method (Little et al. (2023) <doi:10.1038/s41467-023-38795-w>).
Author: Paul Little [aut, cre]
Maintainer: Paul Little <pllittle321@gmail.com>
This is a re-admission after prior archival of version 1.0.0 dated 2025-03-06
Diff between CSeQTL versions 1.0.0 dated 2025-03-06 and 1.0.1 dated 2026-04-24
CSeQTL-1.0.0/CSeQTL/R/data_analysis.R |only CSeQTL-1.0.0/CSeQTL/man/prep_gene_info.Rd |only CSeQTL-1.0.0/CSeQTL/vignettes/intro_cache/html/ols_bulk_26885e6af77fe67a1250012b352254bf.RData |only CSeQTL-1.0.0/CSeQTL/vignettes/intro_cache/html/ols_bulk_26885e6af77fe67a1250012b352254bf.rdb |only CSeQTL-1.0.0/CSeQTL/vignettes/intro_cache/html/ols_bulk_26885e6af77fe67a1250012b352254bf.rdx |only CSeQTL-1.0.0/CSeQTL/vignettes/intro_cache/html/ols_cts_6f1b82ddf90f21f2c538c24dd4ea8fbf.RData |only CSeQTL-1.0.0/CSeQTL/vignettes/intro_cache/html/ols_cts_6f1b82ddf90f21f2c538c24dd4ea8fbf.rdb |only CSeQTL-1.0.0/CSeQTL/vignettes/intro_cache/html/ols_cts_6f1b82ddf90f21f2c538c24dd4ea8fbf.rdx |only CSeQTL-1.0.0/CSeQTL/vignettes/intro_cache/html/setup_e7ddeb5007077b5fc51328234b3e33d9.RData |only CSeQTL-1.0.0/CSeQTL/vignettes/intro_cache/html/setup_e7ddeb5007077b5fc51328234b3e33d9.rdb |only CSeQTL-1.0.0/CSeQTL/vignettes/intro_cache/html/setup_e7ddeb5007077b5fc51328234b3e33d9.rdx |only CSeQTL-1.0.0/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-2_b315d4c909ac5ad651297fb0cffd3017.RData |only CSeQTL-1.0.0/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-2_b315d4c909ac5ad651297fb0cffd3017.rdb |only CSeQTL-1.0.0/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-2_b315d4c909ac5ad651297fb0cffd3017.rdx |only CSeQTL-1.0.0/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-3_74a890062247f1a00dedf4a652bc7b0a.RData |only CSeQTL-1.0.0/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-3_74a890062247f1a00dedf4a652bc7b0a.rdb |only CSeQTL-1.0.0/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-3_74a890062247f1a00dedf4a652bc7b0a.rdx |only CSeQTL-1.0.0/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-4_88af329595241ac7714ba2ab5e6c0d06.RData |only CSeQTL-1.0.0/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-4_88af329595241ac7714ba2ab5e6c0d06.rdb |only CSeQTL-1.0.0/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-4_88af329595241ac7714ba2ab5e6c0d06.rdx |only CSeQTL-1.0.0/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-5_4cc7ef040c17758fddaadc0a051aefbf.RData |only CSeQTL-1.0.0/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-5_4cc7ef040c17758fddaadc0a051aefbf.rdb |only CSeQTL-1.0.0/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-5_4cc7ef040c17758fddaadc0a051aefbf.rdx |only CSeQTL-1.0.1/CSeQTL/DESCRIPTION | 19 - CSeQTL-1.0.1/CSeQTL/MD5 | 57 +-- CSeQTL-1.0.1/CSeQTL/NAMESPACE | 3 CSeQTL-1.0.1/CSeQTL/R/import.R | 1 CSeQTL-1.0.1/CSeQTL/inst/WORDLIST |only CSeQTL-1.0.1/CSeQTL/inst/doc/intro.html | 158 +++------- CSeQTL-1.0.1/CSeQTL/vignettes/intro_cache/html/ols_bulk_c27bb844ca2e4d9874c233d53387f76e.RData |only CSeQTL-1.0.1/CSeQTL/vignettes/intro_cache/html/ols_bulk_c27bb844ca2e4d9874c233d53387f76e.rdb |only CSeQTL-1.0.1/CSeQTL/vignettes/intro_cache/html/ols_bulk_c27bb844ca2e4d9874c233d53387f76e.rdx |only CSeQTL-1.0.1/CSeQTL/vignettes/intro_cache/html/ols_cts_cef0692563220cb6def386034e9a2d93.RData |only CSeQTL-1.0.1/CSeQTL/vignettes/intro_cache/html/ols_cts_cef0692563220cb6def386034e9a2d93.rdb |only CSeQTL-1.0.1/CSeQTL/vignettes/intro_cache/html/ols_cts_cef0692563220cb6def386034e9a2d93.rdx |only CSeQTL-1.0.1/CSeQTL/vignettes/intro_cache/html/setup_8c7281b1695da5d21652f9cbd3083f50.RData |only CSeQTL-1.0.1/CSeQTL/vignettes/intro_cache/html/setup_8c7281b1695da5d21652f9cbd3083f50.rdb |only CSeQTL-1.0.1/CSeQTL/vignettes/intro_cache/html/setup_8c7281b1695da5d21652f9cbd3083f50.rdx |only CSeQTL-1.0.1/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-2_ea51fe06aef9c3724fcd3daef6f1277f.RData |only CSeQTL-1.0.1/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-2_ea51fe06aef9c3724fcd3daef6f1277f.rdb |only CSeQTL-1.0.1/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-2_ea51fe06aef9c3724fcd3daef6f1277f.rdx |only CSeQTL-1.0.1/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-3_f98d00d6847909e25f283ffeca0e4dab.RData |only CSeQTL-1.0.1/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-3_f98d00d6847909e25f283ffeca0e4dab.rdb |only CSeQTL-1.0.1/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-3_f98d00d6847909e25f283ffeca0e4dab.rdx |only CSeQTL-1.0.1/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-4_841a8f488b300b1aadf1a819318a21b0.RData |only CSeQTL-1.0.1/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-4_841a8f488b300b1aadf1a819318a21b0.rdb |only CSeQTL-1.0.1/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-4_841a8f488b300b1aadf1a819318a21b0.rdx |only CSeQTL-1.0.1/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-5_b75bc1fafd4ce1f14b83e08b1830ee57.RData |only CSeQTL-1.0.1/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-5_b75bc1fafd4ce1f14b83e08b1830ee57.rdb |only CSeQTL-1.0.1/CSeQTL/vignettes/intro_cache/html/unnamed-chunk-5_b75bc1fafd4ce1f14b83e08b1830ee57.rdx |only CSeQTL-1.0.1/CSeQTL/vignettes/intro_files/figure-html/unnamed-chunk-2-3.png |binary CSeQTL-1.0.1/CSeQTL/vignettes/intro_files/figure-html/unnamed-chunk-2-4.png |binary 52 files changed, 92 insertions(+), 146 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-12-13 1.3
2016-07-19 1.2
2015-11-13 1.1
2015-11-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-04-04 0.90.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-10 1.2
2015-10-01 1.1
2015-07-21 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-01 1.4
2015-09-25 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-17 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-25 1.0.0
2018-03-13 0.2.2
2018-01-10 0.2.1
2017-10-19 0.2.0
2017-03-16 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-12-09 1.0
Title: Seamless R and C++ Integration
Description: The 'Rcpp' package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and objects can be
mapped back and forth to C++ equivalents which facilitates both writing of new
code as well as easier integration of third-party libraries. Documentation
about 'Rcpp' is provided by several vignettes included in this package, via the
'Rcpp Gallery' site at <https://gallery.rcpp.org>, the paper by Eddelbuettel and
Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013,
<doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018,
<doi:10.1080/00031305.2017.1375990>); see 'citation("Rcpp")' for details.
Author: Dirk Eddelbuettel [aut, cre] ,
Romain Francois [aut] ,
JJ Allaire [aut] ,
Kevin Ushey [aut] ,
Qiang Kou [aut] ,
Nathan Russell [aut],
Inaki Ucar [aut] ,
Doug Bates [aut] ,
John Chambers [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rcpp versions 1.1.1-1 dated 2026-04-15 and 1.1.1-1.1 dated 2026-04-24
ChangeLog | 11 ++++++----- DESCRIPTION | 15 ++++++++++----- MD5 |only build/vignette.rds |binary inst/NEWS.Rd | 6 ++++-- 5 files changed, 20 insertions(+), 12 deletions(-)