Title: Tests on Properties of Space-Time Covariance Functions
Description: Tests on properties of space-time covariance functions.
Tests on symmetry, separability and for assessing
different forms of non-separability are available. Moreover tests on
some classes of covariance functions, such that the classes of
product-sum models, Gneiting models and integrated product models have
been provided. It is the companion R package to the papers of
Cappello, C., De Iaco, S., Posa, D., 2018, Testing the type of non-separability
and some classes of space-time covariance function models <doi:10.1007/s00477-017-1472-2>
and Cappello, C., De Iaco, S., Posa, D., 2020, covatest: an R package for
selecting a class of space-time covariance functions <doi:10.18637/jss.v094.i01>.
Author: Sandra De Iaco [aut, cre],
Claudia Cappello [aut],
Donato Posa [aut],
Sabrina Maggio [ctb]
Maintainer: Sandra De Iaco <sandra.deiaco@unisalento.it>
Diff between covatest versions 1.2.4 dated 2025-05-13 and 1.2.5 dated 2026-05-15
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/covaprop.R | 5 ++--- R/sepindex.R | 7 +++---- build/stage23.rdb |binary man/covaprop-class.Rd | 5 ++--- man/sepindex-class.Rd | 7 +++---- 7 files changed, 20 insertions(+), 24 deletions(-)
Title: Installing and Loading R Packages for Reproducible Workflows
Description: A single key function, 'Require' that makes rerun-tolerant
versions of 'install.packages' and 'require' for CRAN packages, packages
no longer on CRAN (i.e., archived), specific versions of packages,
and GitHub packages. This approach is developed to create reproducible
workflows that are flexible and fast enough to use while in development stages,
while able to build snapshots once a stable package collection is found.
As with other functions in a reproducible workflow, this package
emphasizes functions that return the same result whether it is
the first or subsequent times running the function, with subsequent times being
sufficiently fast that they can be run every time without undue waiting burden on
the user or developer.
Author: Eliot J B McIntire [aut, cre] ,
Alex M Chubaty [ctb] ,
His Majesty the King in Right of Canada, as represented by the Minister
of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between Require versions 1.0.1 dated 2024-08-17 and 2.0.0 dated 2026-05-15
Require-1.0.1/Require/tests/testthat/test-07pkgSnapshotLong_testthat.R |only Require-2.0.0/Require/DESCRIPTION | 33 Require-2.0.0/Require/MD5 | 178 Require-2.0.0/Require/NAMESPACE | 180 Require-2.0.0/Require/NEWS.md | 1545 + Require-2.0.0/Require/R/CRAN.R | 132 Require-2.0.0/Require/R/Require-helpers.R | 3879 ++-- Require-2.0.0/Require/R/Require2.R | 8546 +++++----- Require-2.0.0/Require/R/RequireOptions.R | 226 Require-2.0.0/Require/R/envs.R | 268 Require-2.0.0/Require/R/extract.R | 308 Require-2.0.0/Require/R/helpers.R | 1413 - Require-2.0.0/Require/R/messages.R | 772 Require-2.0.0/Require/R/pak.R | 4182 ++++ Require-2.0.0/Require/R/pkgDep.R | 3186 +-- Require-2.0.0/Require/R/pkgDep3.R | 3312 ++- Require-2.0.0/Require/R/pkgSnapshot.R | 2903 +++ Require-2.0.0/Require/R/setLibPaths.R | 458 Require-2.0.0/Require/R/setup.R | 878 - Require-2.0.0/Require/R/zzz.R | 221 Require-2.0.0/Require/README.md | 548 Require-2.0.0/Require/build/vignette.rds |binary Require-2.0.0/Require/inst/WORDLIST | 220 Require-2.0.0/Require/inst/doc/Require.R | 207 Require-2.0.0/Require/inst/doc/Require.Rmd | 713 Require-2.0.0/Require/inst/doc/Require.html | 2109 +- Require-2.0.0/Require/inst/snapshot.txt | 761 Require-2.0.0/Require/inst/timings.csv | 12 Require-2.0.0/Require/man/DESCRIPTION-helpers.Rd | 98 Require-2.0.0/Require/man/GitHubTools.Rd | 56 Require-2.0.0/Require/man/Require.Rd | 603 Require-2.0.0/Require/man/RequireOptions.Rd | 141 Require-2.0.0/Require/man/availablePackagesOverride.Rd | 94 Require-2.0.0/Require/man/availableVersions.Rd | 124 Require-2.0.0/Require/man/cacheDefaultDir.Rd | 30 Require-2.0.0/Require/man/cacheDir.Rd | 126 Require-2.0.0/Require/man/cacheGetOptionCachePkgDir.Rd | 46 Require-2.0.0/Require/man/cachePurge.Rd | 98 Require-2.0.0/Require/man/checkLibPaths.Rd | 56 Require-2.0.0/Require/man/checkPath.Rd | 130 Require-2.0.0/Require/man/clearRequire.Rd | 114 Require-2.0.0/Require/man/compareVersion2.Rd | 48 Require-2.0.0/Require/man/dealWithMissingLibPaths.Rd | 70 Require-2.0.0/Require/man/detachAll.Rd | 86 Require-2.0.0/Require/man/doLibPaths.Rd | 58 Require-2.0.0/Require/man/dot-downloadFileMasterMainAuth.Rd | 88 Require-2.0.0/Require/man/dot-installed.pkgs.Rd | 114 Require-2.0.0/Require/man/envPkgCreate.Rd | 30 Require-2.0.0/Require/man/envPkgDepDESCFileCreate.Rd | 22 Require-2.0.0/Require/man/envPkgDepDepsCreate.Rd | 22 Require-2.0.0/Require/man/getDeps.Rd | 119 Require-2.0.0/Require/man/internetExists.Rd |only Require-2.0.0/Require/man/joinToAvailablePackages.Rd | 74 Require-2.0.0/Require/man/masterMainToHead.Rd | 36 Require-2.0.0/Require/man/messageVerbose.Rd | 138 Require-2.0.0/Require/man/modifyList2.Rd | 2 Require-2.0.0/Require/man/normPath.Rd | 122 Require-2.0.0/Require/man/pakEnv.Rd | 22 Require-2.0.0/Require/man/pkgDep.Rd | 489 Require-2.0.0/Require/man/pkgDepEnv.Rd | 22 Require-2.0.0/Require/man/pkgDepIfDepRemoved.Rd | 100 Require-2.0.0/Require/man/pkgSnapshot.Rd | 385 Require-2.0.0/Require/man/rmBase.Rd | 36 Require-2.0.0/Require/man/rversions.Rd | 5 Require-2.0.0/Require/man/setLibPaths.Rd | 196 Require-2.0.0/Require/man/setLinuxBinaryRepo.Rd | 44 Require-2.0.0/Require/man/setup.Rd | 105 Require-2.0.0/Require/man/splitKeepOrderAndDTIntegrity.Rd | 48 Require-2.0.0/Require/man/sysInstallAndDownload.Rd | 124 Require-2.0.0/Require/man/updatePackages.Rd | 64 Require-2.0.0/Require/tests/testthat.R | 26 Require-2.0.0/Require/tests/testthat/fixtures |only Require-2.0.0/Require/tests/testthat/helper_0.R | 166 Require-2.0.0/Require/tests/testthat/setup.R | 432 Require-2.0.0/Require/tests/testthat/test-00cachedir_testthat.R |only Require-2.0.0/Require/tests/testthat/test-00pkgSnapshot_testthat.R | 324 Require-2.0.0/Require/tests/testthat/test-01packages_testthat.R | 831 Require-2.0.0/Require/tests/testthat/test-02extract_testthat.R | 132 Require-2.0.0/Require/tests/testthat/test-03helpers_testthat.R | 343 Require-2.0.0/Require/tests/testthat/test-04other_testthat.R | 601 Require-2.0.0/Require/tests/testthat/test-05packagesLong_testthat.R | 312 Require-2.0.0/Require/tests/testthat/test-06pkgDep_testthat.R | 372 Require-2.0.0/Require/tests/testthat/test-08modules_testthat.R | 485 Require-2.0.0/Require/tests/testthat/test-09pkgSnapshotLong_testthat.R | 580 Require-2.0.0/Require/tests/testthat/test-10DifferentPkgs_testthat.R | 105 Require-2.0.0/Require/tests/testthat/test-11misc_testthat.R | 182 Require-2.0.0/Require/tests/testthat/test-12offlineMode_testthat.R | 174 Require-2.0.0/Require/tests/testthat/test-13coverage_testthat.R |only Require-2.0.0/Require/tests/testthat/test-14coverage2_testthat.R |only Require-2.0.0/Require/tests/testthat/test-15bugfixes_testthat.R |only Require-2.0.0/Require/tests/testthat/test-16installFailureMetadata_testthat.R |only Require-2.0.0/Require/tests/testthat/test-16parentChain_integration_testthat.R |only Require-2.0.0/Require/tests/testthat/test-17usePak.R |only Require-2.0.0/Require/tests/testthat/test-18nosudo_testthat.R |only Require-2.0.0/Require/tests/testthat/test-19smallSnapshot_testthat.R |only Require-2.0.0/Require/vignettes/Require.Rmd | 713 96 files changed, 27785 insertions(+), 19568 deletions(-)
Title: Procedures for Psychological, Psychometric, and Personality
Research
Description: A general purpose toolbox developed originally for personality, psychometric theory and experimental psychology. Functions are primarily for multivariate analysis and scale construction using factor analysis, principal component analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Item Response Theory is done using factor analysis of tetrachoric and polychoric correlations. Functions for analyzing data at multiple levels include within and between group statistics, including correlations and factor analysis. Validation and cross validation of scales developed using basic machine learning algorithms are provided, as are functions for simulating and testing particular item and test structures. Several functions serve as a useful front end for structural equation modeling. Graphical displays of path diagrams, including mediation models, factor analysis and structural equation models are created using basic graphics. Some of the fu [...truncated...]
Author: William Revelle [aut, cre]
Maintainer: William Revelle <revelle@northwestern.edu>
Diff between psych versions 2.6.3 dated 2026-03-25 and 2.6.5 dated 2026-05-15
DESCRIPTION | 8 +++--- MD5 | 56 ++++++++++++++++++++++---------------------- NAMESPACE | 1 R/Promax.R | 18 ++++++++++---- R/describe.R | 2 - R/describe.by.R | 2 - R/fa.R | 8 +++--- R/faRotate.r | 28 +++++++++++++--------- R/fiml.R | 9 +++---- R/misc.R | 18 ++++++++++++-- R/principal.R | 2 - build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 2 - inst/NEWS.Rd | 17 +++++++++++++ inst/doc/scoring.R | 6 ++-- inst/doc/scoring.Rnw | 8 +++--- inst/doc/scoring.pdf |binary man/AUC.Rd | 4 ++- man/ICLUST.graph.Rd | 2 - man/Promax.Rd | 7 +++-- man/fa.Rd | 6 ++-- man/faRotate.Rd | 61 +++++++++++++++++++++++++++++++++++++++++++----- man/factor.residuals.Rd | 6 ++-- man/factor.rotate.Rd | 2 - man/misc.Rd | 5 +++ man/mssd.Rd | 2 - man/principal.Rd | 7 ++++- vignettes/scoring.Rnw | 8 +++--- 29 files changed, 201 insertions(+), 94 deletions(-)
Title: Methods for Penetrance Estimation in Family-Based Studies
Description: Implements statistical methods for estimating disease penetrance in
family-based studies. Penetrance refers to the probability of disease
manifestation in individuals carrying specific genetic variants. The package
provides tools for age-specific penetrance estimation, handling missing data,
and accounting for ascertainment bias in family studies.
Cite as: Kubista, N., Braun, D. & Parmigiani, G. (2024) <d 10.1093/bioadv/vbaf154>.
Author: Sol Rosito [cre],
Nicolas Kubista [aut],
BayesMendel Lab [aut],
Giovanni Parmigiani [aut],
Danielle Braun [aut],
Alice Zhang [aut]
Maintainer: Sol Rosito <bmendel@jimmy.harvard.edu>
Diff between penetrance versions 0.1.2 dated 2026-02-05 and 0.1.3 dated 2026-05-15
DESCRIPTION | 24 +- MD5 | 60 +++--- NAMESPACE | 2 R/helpers.R | 314 +++++++++++++++++++++++++++++++++++- R/imputeAges.R | 10 - R/mhChain.R | 64 ++++--- R/mhLoglikehood.r | 170 ++++++++++++------- R/penetranceMain.R | 191 +++++++++++++-------- README.md | 10 - inst/doc/simulation_study.R | 22 ++ inst/doc/simulation_study.Rmd | 27 ++- inst/doc/simulation_study.html | 24 ++ inst/doc/simulation_study_real.R | 11 - inst/doc/simulation_study_real.Rmd | 15 + inst/doc/simulation_study_real.html | 17 + inst/doc/using_penetrance.R | 2 inst/doc/using_penetrance.Rmd | 6 inst/doc/using_penetrance.html | 8 man/calculateBaseline.Rd | 4 man/calculateNCPen.Rd | 38 ++-- man/lik.fn.Rd | 26 ++ man/lik_noSex.Rd | 16 + man/mhChain.Rd | 45 +++-- man/mhLogLikelihood_clipp.Rd | 6 man/mhLogLikelihood_clipp_noSex.Rd | 24 +- man/penetrance.Rd | 151 ++++++++++++----- man/transformDF.Rd | 16 + man/validate_allele_freq.Rd |only man/validate_baseline_data.Rd |only vignettes/simulation_study.Rmd | 27 ++- vignettes/simulation_study_real.Rmd | 15 + vignettes/using_penetrance.Rmd | 6 32 files changed, 1000 insertions(+), 351 deletions(-)
Title: Summary Scores of the Adolescent Brain Cognitive Development
(ABCD) Study
Description: Provides functions to compute summary scores
(besides proprietary ones) reported in the tabulated data resource that is
released by the Adolescent Brain Cognitive Development (ABCD) study.
Author: Le Zhang [aut, cre] ,
Janosch Linkersdoerfer [aut] ,
Olivier Celhay [aut] ,
Biplabendu Das [aut] ,
Sammy Berman [aut] ,
Laura Ziemer [aut] ,
Shermaine Abad [aut]
Maintainer: Le Zhang <dairc.service@gmail.com>
Diff between ABCDscores versions 6.1.0 dated 2025-11-25 and 7.0.0 dated 2026-05-15
ABCDscores-6.1.0/ABCDscores/R/scores_su_sui_tlfb.R |only ABCDscores-7.0.0/ABCDscores/DESCRIPTION | 21 ABCDscores-7.0.0/ABCDscores/MD5 | 605 ABCDscores-7.0.0/ABCDscores/NAMESPACE | 350 ABCDscores-7.0.0/ABCDscores/NEWS.md | 75 ABCDscores-7.0.0/ABCDscores/R/data.R | 101 ABCDscores-7.0.0/ABCDscores/R/globals.R | 851 + ABCDscores-7.0.0/ABCDscores/R/scores_ab.R | 171 ABCDscores-7.0.0/ABCDscores/R/scores_fc.R | 1401 +- ABCDscores-7.0.0/ABCDscores/R/scores_mh.R | 6747 ++++++++-- ABCDscores-7.0.0/ABCDscores/R/scores_mh_aseba.R | 1305 + ABCDscores-7.0.0/ABCDscores/R/scores_mh_famhx.R |only ABCDscores-7.0.0/ABCDscores/R/scores_nt.R | 59 ABCDscores-7.0.0/ABCDscores/R/scores_nt_fitbit.R |only ABCDscores-7.0.0/ABCDscores/R/scores_ph.R | 382 ABCDscores-7.0.0/ABCDscores/R/scores_ph_meds.R |only ABCDscores-7.0.0/ABCDscores/R/scores_su.R | 3021 ++++ ABCDscores-7.0.0/ABCDscores/R/scores_su_tlfb_sui_sdsu.R |only ABCDscores-7.0.0/ABCDscores/R/utils.R | 124 ABCDscores-7.0.0/ABCDscores/README.md | 22 ABCDscores-7.0.0/ABCDscores/build/partial.rdb |binary ABCDscores-7.0.0/ABCDscores/build/vignette.rds |binary ABCDscores-7.0.0/ABCDscores/data/famhx_config.rda |only ABCDscores-7.0.0/ABCDscores/data/rx_config.rda |only ABCDscores-7.0.0/ABCDscores/data/rx_config_estuse_flags.rda |only ABCDscores-7.0.0/ABCDscores/data/rx_map.rda |only ABCDscores-7.0.0/ABCDscores/data/sdsu_config.rda |only ABCDscores-7.0.0/ABCDscores/data/tlfb_config.rda |binary ABCDscores-7.0.0/ABCDscores/inst/CITATION | 2 ABCDscores-7.0.0/ABCDscores/inst/doc/ABCDscores.Rmd | 14 ABCDscores-7.0.0/ABCDscores/inst/doc/ABCDscores.html | 8 ABCDscores-7.0.0/ABCDscores/man/ABCDscores-package.Rd | 1 ABCDscores-7.0.0/ABCDscores/man/add_sleep_flags.Rd |only ABCDscores-7.0.0/ABCDscores/man/check_args_sdsu.Rd |only ABCDscores-7.0.0/ABCDscores/man/check_args_tlfb.Rd | 2 ABCDscores-7.0.0/ABCDscores/man/check_params_compute_fitbit_activity_table.Rd |only ABCDscores-7.0.0/ABCDscores/man/check_params_compute_fitbit_sleep_table.Rd |only ABCDscores-7.0.0/ABCDscores/man/circular_mean_time.Rd |only ABCDscores-7.0.0/ABCDscores/man/combine_checkboxes.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_ab_p_demo__ntvam_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_ab_p_demo__ntvam_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_block_counts.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_day_counts.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_famhx_endorsement.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_fes__cohes_mean.Rd | 10 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_fes__cohes_nm.Rd | 16 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_fes__confl_mean.Rd | 10 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_fes__confl_nm.Rd | 16 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_fes__expr_mean.Rd | 10 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_fes__expr_nm.Rd | 16 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_fes__intelcult_mean.Rd | 10 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_fes__intelcult_nm.Rd | 10 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_fes__org_mean.Rd | 10 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_fes__org_nm.Rd | 16 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_fes__rec_mean.Rd | 10 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_fes__rec_nm.Rd | 16 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_psb_mean.Rd | 17 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_psb_nm.Rd | 16 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_vs__famil_mean.Rd | 5 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_vs__famil_mean__v01.Rd | 5 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_vs__famil_nm.Rd | 2 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_vs__indselfrel_mean.Rd | 10 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_vs__indselfrel_nm.Rd | 10 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_vs__obl_mean.Rd | 10 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_vs__obl_nm.Rd | 16 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_vs__ref_mean.Rd | 10 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_vs__ref_nm.Rd | 16 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_vs__relig_mean.Rd | 10 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_vs__relig_nm.Rd | 16 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_vs__supp_mean.Rd | 10 ABCDscores-7.0.0/ABCDscores/man/compute_fc_p_vs__supp_nm.Rd | 16 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_fes__cohes_mean.Rd | 9 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_fes__cohes_nm.Rd | 15 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_fes__confl_mean.Rd | 9 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_fes__confl_nm.Rd | 15 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_lone_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_lone_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_lone_nm.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_naa_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_naa_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_pnh_nm.Rd | 15 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_pnh_sum.Rd | 16 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_psb_mean.Rd | 16 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_psb_nm.Rd | 15 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_srpf__dis_mean.Rd | 9 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_srpf__dis_nm.Rd | 15 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_srpf__env_mean.Rd | 9 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_srpf__env_nm.Rd | 15 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_srpf__involv_mean.Rd | 9 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_srpf__involv_nm.Rd | 9 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_vs__famil_mean.Rd | 8 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_vs__famil_mean__v01.Rd | 8 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_vs__famil_nm.Rd | 5 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_vs__famil_nm__v01.Rd | 3 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_vs__indselfrel_mean.Rd | 9 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_vs__indselfrel_nm.Rd | 9 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_vs__obl_mean.Rd | 9 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_vs__obl_nm.Rd | 15 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_vs__ref_mean.Rd | 9 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_vs__ref_nm.Rd | 15 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_vs__relig_mean.Rd | 9 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_vs__relig_nm.Rd | 15 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_vs__supp_mean.Rd | 9 ABCDscores-7.0.0/ABCDscores/man/compute_fc_y_vs__supp_nm.Rd | 15 ABCDscores-7.0.0/ABCDscores/man/compute_fitbit_activity_table.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_fitbit_activity_table_ext.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_fitbit_activity_week.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_fitbit_intensity_scores.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_fitbit_min_totals.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_fitbit_score_minutes_exclusion.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_fitbit_score_steps.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_fitbit_sleep_hr_exclusions.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_fitbit_sleep_table.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_fitbit_sleep_table_ext.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_fitbit_sleep_week.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_fitbit_weekly_summary.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_famhx__alc__moth__fath_indicator.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_famhx__alc__moth__fath_score.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_famhx__dep__moth__fath_indicator.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_famhx__dep__moth__fath_score.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_famhx__doc__moth__fath_indicator.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_famhx__doc__moth__fath_score.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_famhx__drg__moth__fath_indicator.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_famhx__drg__moth__fath_score.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_famhx__halluc__moth__fath_indicator.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_famhx__halluc__moth__fath_score.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_famhx__hosp__moth__fath_indicator.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_famhx__hosp__moth__fath_score.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_famhx__mania__moth__fath_indicator.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_famhx__mania__moth__fath_score.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_famhx__nerve__moth__fath_indicator.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_famhx__nerve__moth__fath_score.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_famhx__suic__moth__fath_indicator.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_famhx__suic__moth__fath_score.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_famhx__troub__moth__fath_indicator.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_famhx__troub__moth__fath_score.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_famhx_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__adhd__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__adhd__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__adhd_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__agor__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__agor__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__agor_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__asd__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__asd__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__asd_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__bpd__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__bpd__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__bpd_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__cond__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__cond__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__cond_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__dep__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__dep__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__dep_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__dmdd__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__dmdd_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__ed__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__ed__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__ed_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__gad__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__gad__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__gad_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__hom__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__hom__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__hom_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__ocd__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__ocd__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__ocd_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__odd__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__odd__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__odd_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__panic__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__panic__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__panic_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__phobia__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__phobia__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__phobia_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__psych__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__psych__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__psych_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__ptsd__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__ptsd__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__ptsd_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__sepanx__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__sepanx__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__sepanx_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__sleep__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__sleep__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__sleep_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__socanx__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__socanx__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__socanx_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__suic__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__suic__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__suic_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__tic__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__tic__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ksads__tic_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ple__exp__bad_count.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ple__exp__bad_count__v01.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ple__exp__bad_count__v02.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ple__exp__bad_count__v03.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ple__exp__bad_count__v04.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ple__exp__good_count.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ple__exp__good_count__v01.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ple__exp__good_count__v02.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ple__exp__good_count__v03.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ple__exp__good_count__v04.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ple_count.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ple_count__v01.Rd | 9 ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ple_count__v02.Rd | 8 ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ple_count__v03.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_p_ple_count__v04.Rd | 8 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__bpd__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__bpd__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__bpd_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__cond__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__cond__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__cond_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__dep__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__dep__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__dep_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__dmdd__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__dmdd_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__ed__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__ed__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__ed_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__gad__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__gad__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__gad_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__ocd__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__ocd__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__ocd_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__panic__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__panic__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__panic_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__ptsd__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__ptsd__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__ptsd_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__sleep__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__sleep__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__sleep_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__socanx__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__socanx__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__socanx_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__suic__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__suic__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ksads__suic_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_peq__overt__agg_nm.Rd | 7 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_peq__overt__agg_sum.Rd | 7 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_peq__overt__vict_nm.Rd | 7 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_peq__overt__vict_sum.Rd | 7 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_peq__rel__agg_nm.Rd | 7 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_peq__rel__agg_sum.Rd | 7 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_peq__rel__vict_nm.Rd | 7 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_peq__rel__vict_sum.Rd | 7 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_peq__rep__agg_nm.Rd | 7 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_peq__rep__agg_sum.Rd | 7 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_peq__rep__vict_nm.Rd | 7 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_peq__rep__vict_sum.Rd | 7 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ple__exp__bad_count.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ple__exp__bad_count__v01.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ple__exp__bad_count__v02.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ple__exp__bad_count__v03.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ple__exp__good_count.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ple__exp__good_count__v01.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ple__exp__good_count__v02.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ple__exp__good_count__v03.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ple_count.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ple_count__v01.Rd | 11 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ple_count__v02.Rd | 8 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ple_count__v03.Rd | 8 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_pps__dist__curr_score.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_pps__dist__pers_score.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ppsss__dist__curr_count.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ppsss__dist__curr_ever.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ppsss__dist__curr_first.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ppsss__dist__pers_count.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ppsss__dist__pers_ever.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ppsss__dist__pers_first.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ppsss_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__dsm__adhd_sum.Rd | 2 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__dsm__adhd_tscore.Rd | 5 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__dsm__anx_sum.Rd | 4 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__dsm__anx_tscore.Rd | 5 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__dsm__cond_sum.Rd | 4 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__dsm__cond_tscore.Rd | 5 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__dsm__dep_nm.Rd | 2 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__dsm__dep_sum.Rd | 6 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__dsm__dep_tscore.Rd | 7 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__dsm__opp_sum.Rd | 4 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__dsm__opp_tscore.Rd | 5 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__dsm__somat_sum.Rd | 4 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__dsm__somat_tscore.Rd | 5 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__pos_sum.Rd | 4 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__pos_tscore.Rd | 5 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__aggr_sum.Rd | 4 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__aggr_tscore.Rd | 5 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__anxdep_nm.Rd | 1 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__anxdep_sum.Rd | 5 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__anxdep_tscore.Rd | 6 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__attn_sum.Rd | 4 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__attn_tscore.Rd | 5 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__ext_sum.Rd | 4 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__ext_tscore.Rd | 5 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__int_nm.Rd | 1 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__int_sum.Rd | 5 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__int_tscore.Rd | 6 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__othpr_nm.Rd | 1 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__othpr_sum.Rd | 5 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__rule_sum.Rd | 4 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__rule_tscore.Rd | 5 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__soc_sum.Rd | 4 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__soc_tscore.Rd | 5 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__som_sum.Rd | 4 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__som_tscore.Rd | 5 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__tho_nm.Rd | 1 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__tho_sum.Rd | 5 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__tho_tscore.Rd | 6 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__wthdep_sum.Rd | 4 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr__synd__wthdep_tscore.Rd | 5 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr_nm.Rd | 3 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr_sum.Rd | 7 ABCDscores-7.0.0/ABCDscores/man/compute_mh_y_ysr_tscore.Rd | 7 ABCDscores-7.0.0/ABCDscores/man/compute_ph_meds_catg_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_ph_meds_estuse_flags_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_ph_p_anthr__fath_height__cm.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_ph_p_anthr__fath_height__in.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_ph_p_anthr__moth_height__cm.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_ph_p_anthr__moth_height__in.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_ph_p_anthr_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_ph_p_sds__da_nm.Rd | 4 ABCDscores-7.0.0/ABCDscores/man/compute_ph_p_sds__dims_nm.Rd | 4 ABCDscores-7.0.0/ABCDscores/man/compute_ph_p_sds__does_nm.Rd | 2 ABCDscores-7.0.0/ABCDscores/man/compute_ph_p_sds__hyphy_nm.Rd | 4 ABCDscores-7.0.0/ABCDscores/man/compute_ph_p_sds__sbd_nm.Rd | 4 ABCDscores-7.0.0/ABCDscores/man/compute_ph_p_sds__swtd_nm.Rd | 4 ABCDscores-7.0.0/ABCDscores/man/compute_ph_p_sds_nm.Rd | 4 ABCDscores-7.0.0/ABCDscores/man/compute_ph_p_sds_sum.Rd | 4 ABCDscores-7.0.0/ABCDscores/man/compute_sleep_ranges_waso.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_sleep_ranges_waso_ext.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_sleep_stage_hr.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_sleep_stage_min.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_ss_use_onset_age.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_ss_use_onset_event.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_ss_use_yn.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__aud__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__aud__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__aud_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__coc__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__coc__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__hall__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__hall__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__mj__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__mj__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__nic__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__nic__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__opi__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__opi__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__othdrg__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__othdrg__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__pcp__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__pcp__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__sed__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__sed__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__solv__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__solv__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__stim__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud__stim__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_p_ksads__dud_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__aud__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__aud__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__aud_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__coc__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__coc__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__hall__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__hall__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__mj__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__mj__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__nic__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__nic__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__opi__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__opi__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__othdrg__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__othdrg__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__pcp__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__pcp__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__sed__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__sed__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__solv__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__solv__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__stim__past__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud__stim__pres__sx_mean.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_ksads__dud_all.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_su_y_sui__last__day_count.Rd | 2 ABCDscores-7.0.0/ABCDscores/man/compute_su_y_sui__onset_useage.Rd | 2 ABCDscores-7.0.0/ABCDscores/man/compute_su_y_sui__reg_useage.Rd | 2 ABCDscores-7.0.0/ABCDscores/man/compute_tlfb_abst.Rd | 2 ABCDscores-7.0.0/ABCDscores/man/compute_tlfb_dt.Rd | 2 ABCDscores-7.0.0/ABCDscores/man/compute_tlfb_maxdose.Rd | 2 ABCDscores-7.0.0/ABCDscores/man/compute_tlfb_mean.Rd | 2 ABCDscores-7.0.0/ABCDscores/man/compute_tlfb_totdose.Rd | 2 ABCDscores-7.0.0/ABCDscores/man/compute_tlfb_totdose_sum.Rd |only ABCDscores-7.0.0/ABCDscores/man/compute_tlfb_ud.Rd | 2 ABCDscores-7.0.0/ABCDscores/man/create_block_ranges.Rd |only ABCDscores-7.0.0/ABCDscores/man/create_sleep_indicator.Rd |only ABCDscores-7.0.0/ABCDscores/man/famhx_config.Rd |only ABCDscores-7.0.0/ABCDscores/man/filter_tlfb.Rd | 2 ABCDscores-7.0.0/ABCDscores/man/flag_implausible_sleep.Rd |only ABCDscores-7.0.0/ABCDscores/man/identify_hr_exclusions.Rd |only ABCDscores-7.0.0/ABCDscores/man/identify_hr_recovery.Rd |only ABCDscores-7.0.0/ABCDscores/man/join_sleep30_and_exclusions.Rd |only ABCDscores-7.0.0/ABCDscores/man/make_offset.Rd |only ABCDscores-7.0.0/ABCDscores/man/map_mid_years.Rd |only ABCDscores-7.0.0/ABCDscores/man/prepare_data_sdsu.Rd |only ABCDscores-7.0.0/ABCDscores/man/rx_map.Rd |only ABCDscores-7.0.0/ABCDscores/man/sdsu_config.Rd |only ABCDscores-7.0.0/ABCDscores/man/ss_mean_ksads.Rd |only ABCDscores-7.0.0/ABCDscores/man/summarize_activity.Rd |only ABCDscores-7.0.0/ABCDscores/man/summarize_sleep.Rd |only ABCDscores-7.0.0/ABCDscores/man/tlfb_config.Rd | 2 ABCDscores-7.0.0/ABCDscores/vignettes/ABCDscores.Rmd | 14 427 files changed, 13912 insertions(+), 2605 deletions(-)
Title: Bayesian Priors for Matrix Population Models
Description: Provides functions to correct biased transition and fertility
estimates in population projection matrices caused by small sample sizes.
Small or short-term studies frequently produce structural zeros
(biologically possible transitions never observed) and structural ones
(transitions estimated at 100% survival, stasis, or mortality that are
biologically implausible). Both distort matrix structure and bias
estimates of population growth. Implements a multinomial-Dirichlet
Bayesian prior for transition probabilities and a Gamma-Poisson prior
for reproduction, allowing analysts to incorporate prior biological
knowledge and regularise estimates from rare or unobserved events.
Includes functions to compute marginal posterior credible intervals for
all transition probabilities (transition_CrI()), visualise those
intervals as point-range plots (plot_transition_CrI()), and display
the full posterior beta density for each matrix entry
(plot_transition_density()). Methods are described in Trembla [...truncated...]
Author: Raymond Tremblay [aut, cre, cph] ,
Andrew Tyre [aut, cph] ,
Maria-Eglee Perez [aut] ,
Sasha Tenhumberg [ctb]
Maintainer: Raymond Tremblay <raymond.tremblay@upr.edu>
Diff between raretrans versions 1.0.4 dated 2026-04-21 and 1.0.5 dated 2026-05-15
DESCRIPTION | 14 +++---- MD5 | 36 +++++++++---------- NEWS.md | 26 ++++++++++++++ R/fill_matrix.R | 67 ++++++++++++++++++++----------------- README.md | 3 + inst/doc/animal_matrices.html | 23 ++++++------ inst/doc/credible_intervals.html | 4 +- inst/doc/introduction.html | 8 ++-- inst/doc/onepopperiod.html | 14 +++---- inst/doc/quick_start.html | 4 +- inst/doc/transition_priors.R | 62 +++++++++++++++++++++------------- inst/doc/transition_priors.Rmd | 62 +++++++++++++++++++++------------- inst/doc/transition_priors.html | 36 +++++++++---------- man/fill_fertility.Rd | 34 +++++++++++------- man/fill_transitions.Rd | 18 ++++++--- man/raretrans-package.Rd | 1 tests/testthat/simtransitions.rds |binary tests/testthat/simtransitions2.rds |binary vignettes/transition_priors.Rmd | 62 +++++++++++++++++++++------------- 19 files changed, 284 insertions(+), 190 deletions(-)
Title: Interface to 'OpenBioMaps' Data and Services
Description: Provides access to selected functions and data available through any 'OpenBioMaps' <https://openbiomaps.org> server instance. 'OpenBioMaps' is an open-source biodiversity data management platform designed for conservation professionals and researchers. User authentication and access control are handled through 'OpenBioMaps' login credentials.
Author: Miklos Ban [aut, cre]
Maintainer: Miklos Ban <banm@vocs.unideb.hu>
Diff between obm versions 2.0 dated 2026-02-28 and 2.1 dated 2026-05-15
DESCRIPTION | 6 MD5 | 7 - NEWS.md |only R/base.R | 356 ++++++++++++++++++++++++++++++++++----------------------- man/obm_get.Rd | 4 5 files changed, 225 insertions(+), 148 deletions(-)
Title: Access and Process Data and Documents of the Manifesto Project
Description: Provides access to coded election programmes from the Manifesto
Corpus and to the Manifesto Project's Main Dataset and routines to analyse this
data. The Manifesto Project <https://manifesto-project.wzb.eu> collects and
analyses election programmes across time and space to measure the political
preferences of parties. The Manifesto Corpus contains the collected and
annotated election programmes in the Corpus format of the package 'tm' to enable
easy use of text processing and text mining functionality. Specific functions
for scaling of coded political texts are included.
Author: Jirka Lewandowski [aut],
Nicolas Merz [aut],
Sven Regel [aut],
Pola Lehmann [cre, ctb],
Paul Muscat [ctb]
Maintainer: Pola Lehmann <pola.lehmann@wzb.eu>
Diff between manifestoR versions 1.6.2 dated 2026-01-29 and 1.6.3 dated 2026-05-15
DESCRIPTION | 14 +++++++------- MD5 | 24 ++++++++++++------------ NAMESPACE | 1 - NEWS | 4 ++++ R/cache.R | 8 +++++--- R/corpus.R | 14 ++++++++------ R/dataset.R | 9 ++------- R/manifesto.R | 4 +++- R/manifestoR-package.r | 1 - R/scaling_bootstrap.R | 4 +++- R/scaling_general.R | 4 +--- inst/doc/manifestoRworkflow.pdf |binary vignettes/manifestoRworkflow.Rmd | 8 ++++---- 13 files changed, 49 insertions(+), 46 deletions(-)
Title: Solving Least Squares or Quadratic Programming Problems under
Equality/Inequality Constraints
Description: It contains functions that solve least squares linear
regression problems under linear equality/inequality
constraints. Functions for solving quadratic programming
problems are also available, which transform such problems
into least squares ones first. It is developed based on the
'Fortran' program of Lawson and Hanson (1974, 1995), which is
public domain and available at
<https://www.netlib.org/lawson-hanson/>.
Author: Yong Wang [aut, cre],
Charles L. Lawson [aut],
Richard J. Hanson [aut]
Maintainer: Yong Wang <yongwang@auckland.ac.nz>
Diff between lsei versions 1.3-0 dated 2020-09-17 and 1.3-1 dated 2026-05-15
DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++-------- NAMESPACE | 3 ++- R/lsei.R | 8 +++++--- man/hfti.Rd | 2 +- man/lsei.Rd | 2 +- man/nnls.Rd | 2 +- src/lsei.f | 5 +++-- src/pnnls.f | 2 +- 9 files changed, 28 insertions(+), 24 deletions(-)
Title: Smooth L0 Penalty Approximations for Gaussian Graphical Models
Description: Provides smooth approximations to the L0 norm penalty for
estimating sparse Gaussian graphical models (GGMs). Network estimation
is performed using the Local Linear Approximation (LLA) framework
(Fan & Li, 2001 <doi:10.1198/016214501753382273>;
Zou & Li, 2008 <doi:10.1214/009053607000000802>) with five penalty
functions: arctangent (Wang & Zhu, 2016 <doi:10.1155/2016/6495417>),
EXP (Wang, Fan, & Zhu, 2018 <doi:10.1007/s10463-016-0588-3>), Gumbel,
Log (Candes, Wakin, & Boyd, 2008 <doi:10.1007/s00041-008-9045-x>),
and Weibull. Adaptive penalty parameters for EXP, Gumbel, and Weibull
are estimated via maximum likelihood, and model selection uses
information criteria including AIC, BIC, and EBIC (Extended BIC).
Simulation functions generate multivariate normal data from GGMs with
stochastic block model or small-world (Watts-Strogatz) network structures.
Author: Alexander Christensen [aut, cre] ,
Jeongwon Choi [ctb] ,
John Fox [cph, ctb] ,
Yves Rosseel [cph, ctb] ,
Alexander Robitzsch [cph, ctb] ,
David Blackman [ctb] ,
Sebastiano Vigna [ctb] ,
John Burkardt [cph, ctb]
Maintainer: Alexander Christensen <alexpaulchristensen@gmail.com>
Diff between L0ggm versions 0.0.1 dated 2026-03-26 and 0.1.0 dated 2026-05-15
L0ggm-0.0.1/L0ggm/R/ring2lattice.R |only L0ggm-0.0.1/L0ggm/build |only L0ggm-0.0.1/L0ggm/man/ring2lattice.Rd |only L0ggm-0.1.0/L0ggm/DESCRIPTION | 10 - L0ggm-0.1.0/L0ggm/MD5 | 54 +++---- L0ggm-0.1.0/L0ggm/NAMESPACE | 4 L0ggm-0.1.0/L0ggm/NEWS | 37 ++++ L0ggm-0.1.0/L0ggm/R/L0ggm.R | 2 L0ggm-0.1.0/L0ggm/R/derivatives.R | 2 L0ggm-0.1.0/L0ggm/R/helpers.R | 12 + L0ggm-0.1.0/L0ggm/R/mles.R | 28 ++- L0ggm-0.1.0/L0ggm/R/network_estimation.R | 42 ++++- L0ggm-0.1.0/L0ggm/R/penalties.R | 15 -- L0ggm-0.1.0/L0ggm/R/proxswap_lattice.R |only L0ggm-0.1.0/L0ggm/R/simulate_sbm.R | 39 +++-- L0ggm-0.1.0/L0ggm/R/simulate_smallworld.R | 200 ++++++++------------------- L0ggm-0.1.0/L0ggm/R/smallworldness.R |only L0ggm-0.1.0/L0ggm/R/weibull_parameters.R | 6 L0ggm-0.1.0/L0ggm/R/weibull_weights.R | 2 L0ggm-0.1.0/L0ggm/data/weibull_weights.RData |binary L0ggm-0.1.0/L0ggm/inst/CITATION | 7 L0ggm-0.1.0/L0ggm/inst/COPYRIGHTS | 7 L0ggm-0.1.0/L0ggm/man/network_estimation.Rd | 4 L0ggm-0.1.0/L0ggm/man/proxswap_lattice.Rd |only L0ggm-0.1.0/L0ggm/man/simulate_sbm.Rd | 4 L0ggm-0.1.0/L0ggm/man/simulate_smallworld.Rd | 41 +---- L0ggm-0.1.0/L0ggm/man/smallworldness.Rd |only L0ggm-0.1.0/L0ggm/man/weibull_parameters.Rd | 2 L0ggm-0.1.0/L0ggm/man/weibull_weights.Rd | 2 L0ggm-0.1.0/L0ggm/src/derivatives.c | 9 - L0ggm-0.1.0/L0ggm/src/init.c | 13 + L0ggm-0.1.0/L0ggm/src/proxswap.c |only 32 files changed, 280 insertions(+), 262 deletions(-)
Title: Implement Descriptive Studies Using the Common Data Model
Description: An end-to-end framework that enables users to implement various descriptive studies for a given set of target and outcome cohorts for data mapped to the Observational Medical Outcomes Partnership Common Data Model.
Author: Jenna Reps [aut, cre],
Patrick Ryan [aut],
Chris Knoll [aut]
Maintainer: Jenna Reps <jreps@its.jnj.com>
Diff between Characterization versions 3.0.0 dated 2026-03-25 and 3.0.1 dated 2026-05-15
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/Database.R | 2 +- R/RunCharacterization.R | 6 +++--- inst/doc/Specification.html | 2 +- inst/doc/UsingPackage.html | 2 +- inst/sql/sql_server/ResultTables.sql | 6 +++--- man/runCharacterizationAnalyses.Rd | 2 +- 8 files changed, 21 insertions(+), 21 deletions(-)
More information about Characterization at CRAN
Permanent link
Title: Extracts Risk Neutral Densities of Prices, Money Market Rates
and Government Bond Yields from Interest Rates Futures Options
Prices
Description: Provides with parametric risk neutral densities and cumulative densities for futures prices on fixed-income products. It relies on options on Short Term Interest Rate futures contracts or options on government bond futures contracts. It models the price of the underlying asset as a mixture of either two or three lognormal densities. It also offers new functions which provide with risk neutral densities and cumulative densities of the money market rate or the government bond yield inferred from the futures contract's price, using the density of the futures price. The package leverages on the works of Melick, W. R. and Thomas, C. P. (1997) <doi:10.2307/2331318> and B. Bahra (1998) <doi:10.2139/ssrn.77429>.
Author: William Arrata [aut, cre]
Maintainer: William Arrata <william.arrata@gmail.com>
Diff between yrnd versions 0.1.2 dated 2026-04-15 and 0.1.3 dated 2026-05-15
DESCRIPTION | 9 MD5 | 40 NAMESPACE | 1 R/bond_future_charac_bbg.R | 64 R/bond_future_price.R | 57 R/ctd_bond_yield.R | 81 R/globals.R | 4 R/option_prices_bbg.R | 99 R/stir_future_charac_bbg.R |only R/stir_future_price.R | 70 R/stir_rate.R | 32 inst/doc/yrnd_functions.R | 108 inst/doc/yrnd_functions.Rmd | 126 inst/doc/yrnd_functions.html |109737 +++++++++++++++++++++--------------------- man/bond_future_charac_bbg.Rd | 4 man/bond_future_price.Rd | 6 man/ctd_bond_yield.Rd | 12 man/option_prices_bbg.Rd | 4 man/stir_future_charac_bbg.Rd |only man/stir_future_price.Rd | 8 man/stir_rate.Rd | 8 vignettes/yrnd_functions.Rmd | 126 22 files changed, 55362 insertions(+), 55234 deletions(-)
Title: Input/Output 'SomaScan' Data
Description: Load and export 'SomaScan' data via the
'SomaLogic Operating Co., Inc.' structured text file
called an ADAT ('*.adat'). For file format see
<https://github.com/SomaLogic/SomaLogic-Data/blob/main/README.md>.
The package also exports auxiliary functions for
manipulating, wrangling, and extracting relevant
information from an ADAT object once in memory.
Author: Stu Field [aut] ,
Caleb Scheidel [cre],
SomaLogic Operating Co., Inc. [cph, fnd]
Maintainer: Caleb Scheidel <calebjscheidel@gmail.com>
Diff between SomaDataIO versions 6.6.0 dated 2026-05-04 and 6.6.1 dated 2026-05-15
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 10 ++++++++++ R/medianNormalize.R | 27 +++++++++++++++------------ README.md | 2 +- tests/testthat/test-medianNormalize.R | 8 ++++++++ 6 files changed, 42 insertions(+), 21 deletions(-)
Title: Context Engineering for Large Language Model Agents
Description: Context-engineering primitives for Artificial Intelligence (AI)
coding agents working in R. Assembles agent context from memory and
instruction files ('AGENTS.md', 'CLAUDE.md'), traces function call
blast radius across projects, generates project briefings, parses
source into Abstract Syntax Tree (AST) symbol indices, discovers
dependency graphs, and introspects installed packages.
Zero dependencies.
Author: Troy Hernandez [aut, cre] ,
cornball.ai [cph]
Maintainer: Troy Hernandez <troy@cornball.ai>
Diff between saber versions 0.3.0 dated 2026-04-05 and 0.7.1 dated 2026-05-15
DESCRIPTION | 31 ++++--- MD5 | 50 +++++++----- NAMESPACE | 6 + NEWS.md |only R/agent_context.R |only R/blast.R | 96 ++++++++++++++++------- R/briefing.R | 72 ++--------------- R/doc_scan.R |only R/fn_graph.R |only R/graph_svg.R |only R/pkg.R | 14 +-- R/pkg_graph.R |only R/projects.R | 7 - R/saber-package.R |only R/symbols.R | 5 - README.md | 154 ++++++++++++++++++++++++++----------- inst/scripts/session-start.R | 74 +++++++++++++++-- inst/tinytest/test_agent_context.R |only inst/tinytest/test_blast.R | 86 ++++++++++++++++++++ inst/tinytest/test_briefing.R | 38 +-------- inst/tinytest/test_fn_graph.R |only inst/tinytest/test_graph_svg.R |only inst/tinytest/test_pkg_graph.R |only inst/tinytest/test_session_start.R | 62 ++++++++++++++ man/agent_context.Rd |only man/blast_radius.Rd | 19 ++++ man/briefing.Rd | 29 ++---- man/fn_graph.Rd |only man/graph_svg.Rd |only man/pkg_exports.Rd | 3 man/pkg_graph.Rd |only man/projects.Rd | 3 man/saber-package.Rd |only man/symbols.Rd | 5 - 34 files changed, 510 insertions(+), 244 deletions(-)
Title: Parallel Nonparametric Kernel Smoothing Methods for Mixed Data
Types Using 'MPI'
Description: Nonparametric (and semiparametric) kernel methods that seamlessly
handle a mix of continuous, unordered, and ordered factor data types. This
package is a parallel implementation of the 'np' package based on the 'MPI'
specification that incorporates the 'Rmpi' package (Hao Yu
<hyu@stats.uwo.ca>) with minor modifications and we are extremely grateful
to Hao Yu for his contributions to the 'R' community. We would like to
gratefully acknowledge support from the Natural Sciences and Engineering
Research Council of Canada (NSERC, <https://www.nserc-crsng.gc.ca/>), the
Social Sciences and Humanities Research Council of Canada (SSHRC,
<https://www.sshrc-crsh.gc.ca/>), and the Shared Hierarchical Academic
Research Computing Network (SHARCNET, <https://sharcnet.ca/>). We would
also like to acknowledge the contributions of the 'GNU GSL' authors. In
particular, we adapt the 'GNU GSL' B-spline routine 'gsl_bspline.c' adding
automated support for quantile knots (in addition t [...truncated...]
Author: Jeffrey S. Racine [aut, cre],
Tristen Hayfield [aut],
Hao Yu [ctb, cph],
The GSL Team [cph],
Numerical Recipes Software [cph]
Maintainer: Jeffrey S. Racine <racinej@mcmaster.ca>
Diff between npRmpi versions 0.70-1 dated 2026-05-01 and 0.70-2 dated 2026-05-15
npRmpi-0.70-1/npRmpi/demo/npcdensls_npRmpi_attach.R |only npRmpi-0.70-1/npRmpi/demo/npcdensls_npRmpi_profile.R |only npRmpi-0.70-1/npRmpi/demo/npcdensls_serial.R |only npRmpi-0.70-1/npRmpi/demo/npcdensml_npRmpi_attach.R |only npRmpi-0.70-1/npRmpi/demo/npcdensml_npRmpi_profile.R |only npRmpi-0.70-1/npRmpi/demo/npcdensml_serial.R |only npRmpi-0.70-1/npRmpi/demo/npcdistls_npRmpi_attach.R |only npRmpi-0.70-1/npRmpi/demo/npcdistls_npRmpi_profile.R |only npRmpi-0.70-1/npRmpi/demo/npcdistls_serial.R |only npRmpi-0.70-1/npRmpi/demo/npindexich_npRmpi_attach.R |only npRmpi-0.70-1/npRmpi/demo/npindexich_npRmpi_profile.R |only npRmpi-0.70-1/npRmpi/demo/npindexich_serial.R |only npRmpi-0.70-1/npRmpi/demo/npindexks_npRmpi_attach.R |only npRmpi-0.70-1/npRmpi/demo/npindexks_npRmpi_profile.R |only npRmpi-0.70-1/npRmpi/demo/npindexks_serial.R |only npRmpi-0.70-1/npRmpi/demo/npreglcaic_npRmpi_attach.R |only npRmpi-0.70-1/npRmpi/demo/npreglcaic_npRmpi_profile.R |only npRmpi-0.70-1/npRmpi/demo/npreglcaic_serial.R |only npRmpi-0.70-1/npRmpi/demo/npreglcls_npRmpi_attach.R |only npRmpi-0.70-1/npRmpi/demo/npreglcls_npRmpi_profile.R |only npRmpi-0.70-1/npRmpi/demo/npreglcls_serial.R |only npRmpi-0.70-1/npRmpi/demo/npregllaic_npRmpi_attach.R |only npRmpi-0.70-1/npRmpi/demo/npregllaic_npRmpi_profile.R |only npRmpi-0.70-1/npRmpi/demo/npregllaic_serial.R |only npRmpi-0.70-1/npRmpi/demo/npregllls_npRmpi_attach.R |only npRmpi-0.70-1/npRmpi/demo/npregllls_npRmpi_profile.R |only npRmpi-0.70-1/npRmpi/demo/npregllls_serial.R |only npRmpi-0.70-1/npRmpi/demo/npudensls_npRmpi_attach.R |only npRmpi-0.70-1/npRmpi/demo/npudensls_npRmpi_profile.R |only npRmpi-0.70-1/npRmpi/demo/npudensls_serial.R |only npRmpi-0.70-1/npRmpi/demo/npudensml_npRmpi_attach.R |only npRmpi-0.70-1/npRmpi/demo/npudensml_npRmpi_profile.R |only npRmpi-0.70-1/npRmpi/demo/npudensml_serial.R |only npRmpi-0.70-1/npRmpi/demo/npudistcdf_npRmpi_attach.R |only npRmpi-0.70-1/npRmpi/demo/npudistcdf_npRmpi_profile.R |only npRmpi-0.70-1/npRmpi/demo/npudistcdf_serial.R |only npRmpi-0.70-2/npRmpi/CHANGELOG | 421 npRmpi-0.70-2/npRmpi/DESCRIPTION | 8 npRmpi-0.70-2/npRmpi/MD5 | 637 - npRmpi-0.70-2/npRmpi/NAMESPACE | 22 npRmpi-0.70-2/npRmpi/NEWS.md | 88 npRmpi-0.70-2/npRmpi/R/Rcomm.R | 6 npRmpi-0.70-2/npRmpi/R/a.bw.dispatch.R | 37 npRmpi-0.70-2/npRmpi/R/bandwidth.R | 2 npRmpi-0.70-2/npRmpi/R/conbandwidth.R | 2 npRmpi-0.70-2/npRmpi/R/condbandwidth.R | 2 npRmpi-0.70-2/npRmpi/R/condensity.R | 48 npRmpi-0.70-2/npRmpi/R/condistribution.R | 48 npRmpi-0.70-2/npRmpi/R/conmode.R | 228 npRmpi-0.70-2/npRmpi/R/dbandwidth.R | 2 npRmpi-0.70-2/npRmpi/R/density.R | 5 npRmpi-0.70-2/npRmpi/R/distribution.R | 5 npRmpi-0.70-2/npRmpi/R/gsl_bspline.R | 36 npRmpi-0.70-2/npRmpi/R/np.autodispatch.R | 80 npRmpi-0.70-2/npRmpi/R/np.cdenshat.R | 6 npRmpi-0.70-2/npRmpi/R/np.cdhat.helpers.R | 352 npRmpi-0.70-2/npRmpi/R/np.cdisthat.R | 6 npRmpi-0.70-2/npRmpi/R/np.condensity.R | 172 npRmpi-0.70-2/npRmpi/R/np.condensity.bw.R | 123 npRmpi-0.70-2/npRmpi/R/np.condistribution.R | 172 npRmpi-0.70-2/npRmpi/R/np.condistribution.bw.R | 59 npRmpi-0.70-2/npRmpi/R/np.conmode.R | 358 npRmpi-0.70-2/npRmpi/R/np.copula.R | 1544 +++ npRmpi-0.70-2/npRmpi/R/np.density.R | 1 npRmpi-0.70-2/npRmpi/R/np.density.bw.R | 10 npRmpi-0.70-2/npRmpi/R/np.distribution.R | 1 npRmpi-0.70-2/npRmpi/R/np.distribution.bw.R | 8 npRmpi-0.70-2/npRmpi/R/np.lp.degree.search.R | 253 npRmpi-0.70-2/npRmpi/R/np.plot.engine.bandwidth.R | 23 npRmpi-0.70-2/npRmpi/R/np.plot.engine.conbandwidth.R | 40 npRmpi-0.70-2/npRmpi/R/np.plot.engine.condbandwidth.R | 434 - npRmpi-0.70-2/npRmpi/R/np.plot.engine.dbandwidth.R | 23 npRmpi-0.70-2/npRmpi/R/np.plot.engine.plbandwidth.R | 26 npRmpi-0.70-2/npRmpi/R/np.plot.engine.rbandwidth.R | 24 npRmpi-0.70-2/npRmpi/R/np.plot.engine.scbandwidth.R | 26 npRmpi-0.70-2/npRmpi/R/np.plot.engine.sibandwidth.R | 9 npRmpi-0.70-2/npRmpi/R/np.plot.helpers.R | 4305 ++++++++-- npRmpi-0.70-2/npRmpi/R/np.plot.methods.R | 1778 ++++ npRmpi-0.70-2/npRmpi/R/np.plregression.R | 12 npRmpi-0.70-2/npRmpi/R/np.plregression.bw.R | 1055 ++ npRmpi-0.70-2/npRmpi/R/np.qregression.R | 1066 ++ npRmpi-0.70-2/npRmpi/R/np.reghat.R | 43 npRmpi-0.70-2/npRmpi/R/np.regression.R | 40 npRmpi-0.70-2/npRmpi/R/np.regression.bw.R | 244 npRmpi-0.70-2/npRmpi/R/np.semihat.R | 214 npRmpi-0.70-2/npRmpi/R/np.singleindex.R | 22 npRmpi-0.70-2/npRmpi/R/np.singleindex.bw.R | 174 npRmpi-0.70-2/npRmpi/R/np.smoothcoef.R | 33 npRmpi-0.70-2/npRmpi/R/np.smoothcoef.bw.R | 103 npRmpi-0.70-2/npRmpi/R/np.udenshat.R | 157 npRmpi-0.70-2/npRmpi/R/np.udisthat.R | 202 npRmpi-0.70-2/npRmpi/R/npregiv.R | 23 npRmpi-0.70-2/npRmpi/R/npregivderiv.R | 7 npRmpi-0.70-2/npRmpi/R/plbandwidth.R | 47 npRmpi-0.70-2/npRmpi/R/plregression.R | 112 npRmpi-0.70-2/npRmpi/R/progress.R | 62 npRmpi-0.70-2/npRmpi/R/qregression.R | 65 npRmpi-0.70-2/npRmpi/R/rbandwidth.R | 14 npRmpi-0.70-2/npRmpi/R/regression.R | 20 npRmpi-0.70-2/npRmpi/R/session.R | 68 npRmpi-0.70-2/npRmpi/R/sibandwidth.R | 2 npRmpi-0.70-2/npRmpi/R/singleindex.R | 6 npRmpi-0.70-2/npRmpi/R/smoothbandwidth.R | 2 npRmpi-0.70-2/npRmpi/R/smoothcoefficient.R | 5 npRmpi-0.70-2/npRmpi/R/util.R | 210 npRmpi-0.70-2/npRmpi/R/zzz.R | 4 npRmpi-0.70-2/npRmpi/demo/00Index | 151 npRmpi-0.70-2/npRmpi/demo/npcdens_npRmpi_attach.R |only npRmpi-0.70-2/npRmpi/demo/npcdens_npRmpi_profile.R |only npRmpi-0.70-2/npRmpi/demo/npcdens_npRmpi_session.R |only npRmpi-0.70-2/npRmpi/demo/npcdens_serial.R |only npRmpi-0.70-2/npRmpi/demo/npcdist_npRmpi_attach.R |only npRmpi-0.70-2/npRmpi/demo/npcdist_npRmpi_profile.R |only npRmpi-0.70-2/npRmpi/demo/npcdist_npRmpi_session.R |only npRmpi-0.70-2/npRmpi/demo/npcdist_serial.R |only npRmpi-0.70-2/npRmpi/demo/npcmstest_npRmpi_attach.R | 68 npRmpi-0.70-2/npRmpi/demo/npcmstest_npRmpi_profile.R | 75 npRmpi-0.70-2/npRmpi/demo/npcmstest_npRmpi_session.R |only npRmpi-0.70-2/npRmpi/demo/npcmstest_serial.R | 50 npRmpi-0.70-2/npRmpi/demo/npconmode_npRmpi_attach.R | 63 npRmpi-0.70-2/npRmpi/demo/npconmode_npRmpi_profile.R | 70 npRmpi-0.70-2/npRmpi/demo/npconmode_npRmpi_session.R |only npRmpi-0.70-2/npRmpi/demo/npconmode_serial.R | 44 npRmpi-0.70-2/npRmpi/demo/npcopula_npRmpi_attach.R | 63 npRmpi-0.70-2/npRmpi/demo/npcopula_npRmpi_profile.R | 71 npRmpi-0.70-2/npRmpi/demo/npcopula_npRmpi_session.R |only npRmpi-0.70-2/npRmpi/demo/npcopula_serial.R | 46 npRmpi-0.70-2/npRmpi/demo/npdeneqtest_npRmpi_attach.R | 47 npRmpi-0.70-2/npRmpi/demo/npdeneqtest_npRmpi_profile.R | 51 npRmpi-0.70-2/npRmpi/demo/npdeneqtest_npRmpi_session.R |only npRmpi-0.70-2/npRmpi/demo/npdeneqtest_serial.R | 29 npRmpi-0.70-2/npRmpi/demo/npdeptest_npRmpi_attach.R | 52 npRmpi-0.70-2/npRmpi/demo/npdeptest_npRmpi_profile.R | 56 npRmpi-0.70-2/npRmpi/demo/npdeptest_npRmpi_session.R |only npRmpi-0.70-2/npRmpi/demo/npdeptest_serial.R | 34 npRmpi-0.70-2/npRmpi/demo/npindex_npRmpi_attach.R |only npRmpi-0.70-2/npRmpi/demo/npindex_npRmpi_profile.R |only npRmpi-0.70-2/npRmpi/demo/npindex_npRmpi_session.R |only npRmpi-0.70-2/npRmpi/demo/npindex_serial.R |only npRmpi-0.70-2/npRmpi/demo/npplreg_npRmpi_attach.R | 59 npRmpi-0.70-2/npRmpi/demo/npplreg_npRmpi_profile.R | 67 npRmpi-0.70-2/npRmpi/demo/npplreg_npRmpi_session.R |only npRmpi-0.70-2/npRmpi/demo/npplreg_serial.R | 42 npRmpi-0.70-2/npRmpi/demo/npqreg_npRmpi_attach.R | 48 npRmpi-0.70-2/npRmpi/demo/npqreg_npRmpi_profile.R | 56 npRmpi-0.70-2/npRmpi/demo/npqreg_npRmpi_session.R |only npRmpi-0.70-2/npRmpi/demo/npqreg_serial.R | 29 npRmpi-0.70-2/npRmpi/demo/npreg_npRmpi_attach.R |only npRmpi-0.70-2/npRmpi/demo/npreg_npRmpi_profile.R |only npRmpi-0.70-2/npRmpi/demo/npreg_npRmpi_session.R |only npRmpi-0.70-2/npRmpi/demo/npreg_serial.R |only npRmpi-0.70-2/npRmpi/demo/npregiv_npRmpi_attach.R | 88 npRmpi-0.70-2/npRmpi/demo/npregiv_npRmpi_profile.R | 93 npRmpi-0.70-2/npRmpi/demo/npregiv_npRmpi_session.R |only npRmpi-0.70-2/npRmpi/demo/npregiv_serial.R | 68 npRmpi-0.70-2/npRmpi/demo/npscoef_npRmpi_attach.R | 54 npRmpi-0.70-2/npRmpi/demo/npscoef_npRmpi_profile.R | 58 npRmpi-0.70-2/npRmpi/demo/npscoef_npRmpi_session.R |only npRmpi-0.70-2/npRmpi/demo/npscoef_serial.R | 37 npRmpi-0.70-2/npRmpi/demo/npsdeptest_npRmpi_attach.R | 63 npRmpi-0.70-2/npRmpi/demo/npsdeptest_npRmpi_profile.R | 66 npRmpi-0.70-2/npRmpi/demo/npsdeptest_npRmpi_session.R |only npRmpi-0.70-2/npRmpi/demo/npsdeptest_serial.R | 45 npRmpi-0.70-2/npRmpi/demo/npsigtest_npRmpi_attach.R | 55 npRmpi-0.70-2/npRmpi/demo/npsigtest_npRmpi_profile.R | 59 npRmpi-0.70-2/npRmpi/demo/npsigtest_npRmpi_session.R |only npRmpi-0.70-2/npRmpi/demo/npsigtest_serial.R | 38 npRmpi-0.70-2/npRmpi/demo/npsymtest_npRmpi_attach.R | 63 npRmpi-0.70-2/npRmpi/demo/npsymtest_npRmpi_profile.R | 66 npRmpi-0.70-2/npRmpi/demo/npsymtest_npRmpi_session.R |only npRmpi-0.70-2/npRmpi/demo/npsymtest_serial.R | 45 npRmpi-0.70-2/npRmpi/demo/npudens_npRmpi_attach.R |only npRmpi-0.70-2/npRmpi/demo/npudens_npRmpi_profile.R |only npRmpi-0.70-2/npRmpi/demo/npudens_npRmpi_session.R |only npRmpi-0.70-2/npRmpi/demo/npudens_serial.R |only npRmpi-0.70-2/npRmpi/demo/npudist_npRmpi_attach.R |only npRmpi-0.70-2/npRmpi/demo/npudist_npRmpi_profile.R |only npRmpi-0.70-2/npRmpi/demo/npudist_npRmpi_session.R |only npRmpi-0.70-2/npRmpi/demo/npudist_serial.R |only npRmpi-0.70-2/npRmpi/demo/npunitest_npRmpi_attach.R | 49 npRmpi-0.70-2/npRmpi/demo/npunitest_npRmpi_profile.R | 53 npRmpi-0.70-2/npRmpi/demo/npunitest_npRmpi_session.R |only npRmpi-0.70-2/npRmpi/demo/npunitest_serial.R | 32 npRmpi-0.70-2/npRmpi/demo/tools |only npRmpi-0.70-2/npRmpi/inst/demo_family_npaux.R |only npRmpi-0.70-2/npRmpi/inst/demo_family_npcdens.R |only npRmpi-0.70-2/npRmpi/inst/demo_family_npcdist.R |only npRmpi-0.70-2/npRmpi/inst/demo_family_npindex.R |only npRmpi-0.70-2/npRmpi/inst/demo_family_npplreg.R |only npRmpi-0.70-2/npRmpi/inst/demo_family_npreg.R |only npRmpi-0.70-2/npRmpi/inst/demo_family_npscoef.R |only npRmpi-0.70-2/npRmpi/inst/demo_family_nptests.R |only npRmpi-0.70-2/npRmpi/inst/demo_family_npudens.R |only npRmpi-0.70-2/npRmpi/inst/demo_family_npudist.R |only npRmpi-0.70-2/npRmpi/inst/demo_matrices |only npRmpi-0.70-2/npRmpi/inst/demo_utils.R |only npRmpi-0.70-2/npRmpi/man/data-Engel95.Rd | 25 npRmpi-0.70-2/npRmpi/man/data-italy.Rd | 4 npRmpi-0.70-2/npRmpi/man/data-oecd.Rd | 4 npRmpi-0.70-2/npRmpi/man/data-wage1.Rd | 4 npRmpi-0.70-2/npRmpi/man/gradients.Rd | 23 npRmpi-0.70-2/npRmpi/man/np.cmstest.Rd | 14 npRmpi-0.70-2/npRmpi/man/np.condensity.Rd | 63 npRmpi-0.70-2/npRmpi/man/np.condensity.bw.Rd | 62 npRmpi-0.70-2/npRmpi/man/np.condistribution.Rd | 67 npRmpi-0.70-2/npRmpi/man/np.condistribution.bw.Rd | 62 npRmpi-0.70-2/npRmpi/man/np.conmode.Rd | 337 npRmpi-0.70-2/npRmpi/man/np.copula.Rd | 798 + npRmpi-0.70-2/npRmpi/man/np.deneqtest.Rd | 12 npRmpi-0.70-2/npRmpi/man/np.density.Rd | 24 npRmpi-0.70-2/npRmpi/man/np.density.bw.Rd | 36 npRmpi-0.70-2/npRmpi/man/np.deptest.Rd | 13 npRmpi-0.70-2/npRmpi/man/np.distribution.Rd | 27 npRmpi-0.70-2/npRmpi/man/np.distribution.bw.Rd | 36 npRmpi-0.70-2/npRmpi/man/np.plot.Rd | 404 npRmpi-0.70-2/npRmpi/man/np.plot.controls.Rd |only npRmpi-0.70-2/npRmpi/man/np.plregression.Rd | 45 npRmpi-0.70-2/npRmpi/man/np.plregression.bw.Rd | 104 npRmpi-0.70-2/npRmpi/man/np.qcmstest.Rd | 15 npRmpi-0.70-2/npRmpi/man/np.qregression.Rd | 250 npRmpi-0.70-2/npRmpi/man/np.regression.Rd | 56 npRmpi-0.70-2/npRmpi/man/np.regression.bw.Rd | 60 npRmpi-0.70-2/npRmpi/man/np.sdeptest.Rd | 12 npRmpi-0.70-2/npRmpi/man/np.sigtest.Rd | 14 npRmpi-0.70-2/npRmpi/man/np.singleindex.Rd | 30 npRmpi-0.70-2/npRmpi/man/np.singleindex.bw.Rd | 42 npRmpi-0.70-2/npRmpi/man/np.smoothcoef.Rd | 32 npRmpi-0.70-2/npRmpi/man/np.smoothcoef.bw.Rd | 44 npRmpi-0.70-2/npRmpi/man/np.symtest.Rd | 13 npRmpi-0.70-2/npRmpi/man/np.unitest.Rd | 13 npRmpi-0.70-2/npRmpi/man/npcdenshat.Rd | 24 npRmpi-0.70-2/npRmpi/man/npcdisthat.Rd | 20 npRmpi-0.70-2/npRmpi/man/npreghat.Rd | 23 npRmpi-0.70-2/npRmpi/man/npsemihat.Rd | 23 npRmpi-0.70-2/npRmpi/man/npuniden.boundary.Rd | 4 npRmpi-0.70-2/npRmpi/src/Rmpi.c | 93 npRmpi-0.70-2/npRmpi/src/Rmpi.h | 2 npRmpi-0.70-2/npRmpi/src/gsl_bspline.c | 22 npRmpi-0.70-2/npRmpi/src/headers.h | 2 npRmpi-0.70-2/npRmpi/src/jksum.c | 1362 ++- npRmpi-0.70-2/npRmpi/src/mat_vec.c | 6 npRmpi-0.70-2/npRmpi/src/np.c | 364 npRmpi-0.70-2/npRmpi/src/np_init.c | 4 npRmpi-0.70-2/npRmpi/src/nr.c | 7 npRmpi-0.70-2/npRmpi/src/tree.c | 58 npRmpi-0.70-2/npRmpi/tests/testthat/helper-mpi.R | 5 npRmpi-0.70-2/npRmpi/tests/testthat/test-adaptive-conditional-plot-session-contract.R | 4 npRmpi-0.70-2/npRmpi/tests/testthat/test-attach-close-protocol-contract.R | 15 npRmpi-0.70-2/npRmpi/tests/testthat/test-autodispatch-call-helpers.R | 57 npRmpi-0.70-2/npRmpi/tests/testthat/test-autodispatch-materialize.R | 4 npRmpi-0.70-2/npRmpi/tests/testthat/test-bounded-kernel-contract.R | 6 npRmpi-0.70-2/npRmpi/tests/testthat/test-bw-dispatch-contract.R | 42 npRmpi-0.70-2/npRmpi/tests/testthat/test-bw-eval-helper-contract.R | 18 npRmpi-0.70-2/npRmpi/tests/testthat/test-conditional-bandwidth-unused-dots-contract.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-core-logical-arg-contract.R | 5 npRmpi-0.70-2/npRmpi/tests/testthat/test-core-s3-newdata-hardening.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-demo-profile-makefile-contract.R | 7 npRmpi-0.70-2/npRmpi/tests/testthat/test-formula-dispatch-densdist-contract.R | 8 npRmpi-0.70-2/npRmpi/tests/testthat/test-formula-dispatch-npqreg-contract.R | 121 npRmpi-0.70-2/npRmpi/tests/testthat/test-gsl-bs-s3-contract.R | 27 npRmpi-0.70-2/npRmpi/tests/testthat/test-ll-lp-degree1-parity.R | 85 npRmpi-0.70-2/npRmpi/tests/testthat/test-mpi-helpers.R | 5 npRmpi-0.70-2/npRmpi/tests/testthat/test-mpi-mixed-mode-guards.R | 2 npRmpi-0.70-2/npRmpi/tests/testthat/test-npc-adaptive-nn-lp-baseline-contract.R | 198 npRmpi-0.70-2/npRmpi/tests/testthat/test-npc-conditional-higher-order-gradients.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-npc-lp-metadata-contract.R | 124 npRmpi-0.70-2/npRmpi/tests/testthat/test-npcdens-bootstrap-exact-northstar-contract.R | 24 npRmpi-0.70-2/npRmpi/tests/testthat/test-npcdens-plot-bootstrap-center-contract.R | 12 npRmpi-0.70-2/npRmpi/tests/testthat/test-npcdens-proper-fitted-subprocess-contract.R | 56 npRmpi-0.70-2/npRmpi/tests/testthat/test-npcdensbw-degree-search-nomad-progress-contract.R | 11 npRmpi-0.70-2/npRmpi/tests/testthat/test-npcdensbw-degree-search-nomad-routing-contract.R | 9 npRmpi-0.70-2/npRmpi/tests/testthat/test-npcdenshat.R | 141 npRmpi-0.70-2/npRmpi/tests/testthat/test-npcdist-proper-fitted-subprocess-contract.R | 56 npRmpi-0.70-2/npRmpi/tests/testthat/test-npconmode-proper-probability-contract.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-npcopula.R | 440 + npRmpi-0.70-2/npRmpi/tests/testthat/test-npindexbw-nomad-payload-contract.R | 3 npRmpi-0.70-2/npRmpi/tests/testthat/test-npindexbw-session-nomad-dispatch-contract.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-npplreg-generalized-nn-bootstrap-contract.R | 10 npRmpi-0.70-2/npRmpi/tests/testthat/test-npplreg.R | 129 npRmpi-0.70-2/npRmpi/tests/testthat/test-npplreghat-operator-fanout-contract.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-npqreg-worker-state-contract.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-npqreg.R | 380 npRmpi-0.70-2/npRmpi/tests/testthat/test-npreg-adaptive-plot-session-contract.R | 34 npRmpi-0.70-2/npRmpi/tests/testthat/test-npreg-cvaic-ll-lp-session-contract.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-npreg-formula-response-name-subprocess-contract.R | 2 npRmpi-0.70-2/npRmpi/tests/testthat/test-npreg-glp-higher-order.R | 115 npRmpi-0.70-2/npRmpi/tests/testthat/test-npreg-legacy-remin-contract.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-npreg-ll-lp1-engine-contract.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-npreg-post-quit-plot-subprocess-contract.R | 4 npRmpi-0.70-2/npRmpi/tests/testthat/test-npreg.R | 32 npRmpi-0.70-2/npRmpi/tests/testthat/test-npregbw-degree-search-helper-contract.R | 57 npRmpi-0.70-2/npRmpi/tests/testthat/test-npreghat.R | 84 npRmpi-0.70-2/npRmpi/tests/testthat/test-npudens-bootstrap-rotate-northstar-contract.R | 20 npRmpi-0.70-2/npRmpi/tests/testthat/test-npudisthat-operator-fanout-contract.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-asymptotic-failfast-contract.R | 18 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-autodispatch.R | 16 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-bootstrap-arg-contract.R | 75 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-bootstrap-conditional-frozen-ratio-contract.R | 26 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-bootstrap-inid-fastpath-fixed-smoke-contract.R | 24 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-bootstrap-inid-fastpath-nn-helper-contract.R | 207 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-bootstrap-inid-fastpath-nn-routing-contract.R | 43 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-bootstrap-inid-fastpath-nn-smoke-contract.R | 72 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-bootstrap-inid-fastpath-regression-contract.R | 54 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-bootstrap-locality-contract.R | 6 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-bootstrap-nonfixed-master-assist-contract.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-bootstrap-npindex-frozen-contract.R | 6 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-bootstrap-npplreg-frozen-contract.R | 22 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-bootstrap-npplreg-master-assist-contract.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-bootstrap-npreg-frozen-contract.R | 4 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-bootstrap-npscoef-frozen-contract.R | 4 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-bootstrap-npscoef-master-assist-contract.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-coef-option-contract.R | 10 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-conditional-adaptive-exact-fanout-contract.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-conditional-categorical-gradient-bootstrap.R | 4 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-conditional-gradient-fanout-contract.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-conditional-gradients-bootstrap-contract.R | 4 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-conditional-localpoly-fanout-contract.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-conditional-stage-executor-contract.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-densdist-fixed-lllp-exact.R | 4 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-fixed-bwtype-family-coverage-contract.R | 12 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-guardrails-contract.R | 6 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-helper-semantics-contract.R | 8 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-mpi-only-bootstrap-contract.R | 98 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-nn-active-support-exact.R | 12 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-nn-exact-mpi-binding-contract.R | 10 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-plreg-bootstrap-compose-contract.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-proper-projection-fanout-contract.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-quantile-categorical-gradient-bootstrap.R | 4 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-rbandwidth-categorical-gradient-bootstrap.R | 6 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-rbandwidth-ylab-contract.R | 35 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-regression-fixed-gradient-helper.R | 115 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-return-contract.R | 64 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-runtime-purity-contract.R | 36 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-sc-wild-failfast-contract.R | 19 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-semiparam-wrapper-contract.R | 4 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-sibandwidth-fixed-gradient-bootstrap.R | 120 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-sibandwidth-neval-contract.R | 16 npRmpi-0.70-2/npRmpi/tests/testthat/test-plot-warning-interface-contract.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-predict-newdata-contract.R | 186 npRmpi-0.70-2/npRmpi/tests/testthat/test-progress-bandwidth-common-contract.R | 59 npRmpi-0.70-2/npRmpi/tests/testthat/test-progress-npcopula-contract.R | 62 npRmpi-0.70-2/npRmpi/tests/testthat/test-progress-plot-target-label-contract.R | 2 npRmpi-0.70-2/npRmpi/tests/testthat/test-progress-static-contract.R | 10 npRmpi-0.70-2/npRmpi/tests/testthat/test-qreg-plot-tau-contract.R | 8 npRmpi-0.70-2/npRmpi/tests/testthat/test-regression-formula-contract.R | 68 npRmpi-0.70-2/npRmpi/tests/testthat/test-rmpi-small-guard-contracts.R | 34 npRmpi-0.70-2/npRmpi/tests/testthat/test-rmpi-wrapper-contracts.R | 8 npRmpi-0.70-2/npRmpi/tests/testthat/test-s3-bandwidth-predict-forwarders.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-s3-extractor-contracts.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-s3-internal-kbandwidth-contract.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-semihat.R | 126 npRmpi-0.70-2/npRmpi/tests/testthat/test-semiparam-s3-newdata-hardening.R |only npRmpi-0.70-2/npRmpi/tests/testthat/test-session-arg-contract.R | 1 npRmpi-0.70-2/npRmpi/tests/testthat/test-session-routing-subprocess-contract.R | 230 354 files changed, 20877 insertions(+), 5937 deletions(-)
Title: Nonparametric Kernel Smoothing Methods for Mixed Data Types
Description: Nonparametric (and semiparametric) kernel methods that seamlessly handle a mix of continuous, unordered, and ordered factor data types. We would like to gratefully acknowledge support from the Natural Sciences and Engineering Research Council of Canada (NSERC, <https://www.nserc-crsng.gc.ca/>), the Social Sciences and Humanities Research Council of Canada (SSHRC, <https://www.sshrc-crsh.gc.ca/>), and the Shared Hierarchical Academic Research Computing Network (SHARCNET, <https://sharcnet.ca/>). We would also like to acknowledge the contributions of the GNU GSL authors. In particular, we adapt the GNU GSL B-spline routine gsl_bspline.c adding automated support for quantile knots (in addition to uniform knots), providing missing functionality for derivatives, and for extending the splines beyond their endpoints.
Author: Jeffrey S. Racine [aut, cre],
Tristen Hayfield [aut]
Maintainer: Jeffrey S. Racine <racinej@mcmaster.ca>
Diff between np versions 0.70-1 dated 2026-05-02 and 0.70-2 dated 2026-05-15
CHANGELOG | 172 DESCRIPTION | 12 MD5 | 374 +- NAMESPACE | 22 NEWS.md | 80 R/bandwidth.R | 2 R/conbandwidth.R | 2 R/condbandwidth.R | 2 R/condensity.R | 48 R/condistribution.R | 48 R/conmode.R | 228 + R/dbandwidth.R | 2 R/density.R | 5 R/distribution.R | 5 R/gsl_bspline.R | 30 R/np.cdenshat.R | 6 R/np.cdhat.helpers.R | 85 R/np.cdisthat.R | 6 R/np.condensity.R | 87 R/np.condensity.bw.R | 36 R/np.condistribution.R | 87 R/np.condistribution.bw.R | 41 R/np.conmode.R | 362 +- R/np.copula.R | 1425 +++++++- R/np.density.R | 1 R/np.density.bw.R | 8 R/np.distribution.R | 1 R/np.distribution.bw.R | 8 R/np.lp.degree.search.R | 241 + R/np.plot.engine.bandwidth.R | 23 R/np.plot.engine.conbandwidth.R | 40 R/np.plot.engine.condbandwidth.R | 434 ++ R/np.plot.engine.dbandwidth.R | 23 R/np.plot.engine.plbandwidth.R | 26 R/np.plot.engine.rbandwidth.R | 24 R/np.plot.engine.scbandwidth.R | 26 R/np.plot.engine.sibandwidth.R | 9 R/np.plot.helpers.R | 684 ++- R/np.plot.methods.R | 1777 +++++++++- R/np.plot.runtime.prototype.R |only R/np.plregression.R | 12 R/np.plregression.bw.R | 414 ++ R/np.qregression.R | 473 +- R/np.reghat.R | 38 R/np.regression.R | 14 R/np.regression.bw.R | 79 R/np.semihat.R | 71 R/np.singleindex.R | 3 R/np.singleindex.bw.R | 17 R/np.smoothcoef.R | 3 R/np.smoothcoef.bw.R | 35 R/npregiv.R | 23 R/npregivderiv.R | 7 R/plbandwidth.R | 47 R/plregression.R | 112 R/progress.R | 62 R/qregression.R | 60 R/rbandwidth.R | 14 R/regression.R | 20 R/sibandwidth.R | 2 R/singleindex.R | 6 R/smoothbandwidth.R | 2 R/smoothcoefficient.R | 5 R/util.R | 194 + inst/doc/np_entropy_tests.html | 2 inst/doc/np_getting_started.html | 6 man/data-Engel95.Rd | 3 man/data-italy.Rd | 4 man/data-oecd.Rd | 4 man/data-wage1.Rd | 4 man/gradients.Rd | 23 man/np.cmstest.Rd | 22 man/np.condensity.Rd | 79 man/np.condensity.bw.Rd | 70 man/np.condistribution.Rd | 79 man/np.condistribution.bw.Rd | 70 man/np.conmode.Rd | 369 +- man/np.copula.Rd | 687 ++- man/np.deneqtest.Rd | 12 man/np.density.Rd | 40 man/np.density.bw.Rd | 44 man/np.deptest.Rd | 13 man/np.distribution.Rd | 51 man/np.distribution.bw.Rd | 44 man/np.kernelsum.Rd | 13 man/np.plot.Rd | 404 +- man/np.plot.controls.Rd |only man/np.plregression.Rd | 53 man/np.plregression.bw.Rd | 104 man/np.qcmstest.Rd | 19 man/np.qregression.Rd | 298 + man/np.regression.Rd | 104 man/np.regression.bw.Rd | 68 man/np.regressioniv.Rd | 4 man/np.regressionivderiv.Rd | 3 man/np.sdeptest.Rd | 12 man/np.sigtest.Rd | 14 man/np.singleindex.Rd | 30 man/np.singleindex.bw.Rd | 42 man/np.smoothcoef.Rd | 29 man/np.smoothcoef.bw.Rd | 44 man/np.symtest.Rd | 13 man/np.unitest.Rd | 19 man/npcdenshat.Rd | 24 man/npcdisthat.Rd | 22 man/npreghat.Rd | 23 man/npsemihat.Rd | 23 man/npuniden.boundary.Rd | 4 man/npuniden.reflect.Rd | 4 src/gsl_bspline.c | 20 src/jksum.c | 52 src/mat_vec.c | 4 src/np.c | 3 src/nr.c | 7 tests/testthat/test-bounded-kernel-adaptive-cdens-contract.R | 6 tests/testthat/test-bounded-kernel-adaptive-cdist-contract.R | 6 tests/testthat/test-bounded-kernel-adaptive-reg-contract.R | 6 tests/testthat/test-bounded-kernel-adaptive-udist-contract.R | 6 tests/testthat/test-bw-dispatch-contract.R | 23 tests/testthat/test-conditional-bandwidth-unused-dots-contract.R |only tests/testthat/test-core-logical-arg-contract.R | 5 tests/testthat/test-core-s3-newdata-hardening.R |only tests/testthat/test-formula-dispatch-densdist-contract.R | 8 tests/testthat/test-formula-dispatch-npqreg-contract.R | 114 tests/testthat/test-gsl-bs-s3-contract.R | 27 tests/testthat/test-ll-lp-degree1-parity.R | 95 tests/testthat/test-npc-adaptive-nn-lp-baseline-contract.R | 175 tests/testthat/test-npc-conditional-higher-order-gradients.R |only tests/testthat/test-npc-lp-metadata-contract.R | 118 tests/testthat/test-npcdens-plot-bootstrap-center-contract.R | 12 tests/testthat/test-npcdens-proper-contract.R | 40 tests/testthat/test-npcdens-proper-plot-contract.R | 30 tests/testthat/test-npcdensbw-degree-search-nomad-progress-contract.R | 7 tests/testthat/test-npcdenshat.R | 138 tests/testthat/test-npcdist-proper-contract.R | 40 tests/testthat/test-npcdist-proper-plot-contract.R | 30 tests/testthat/test-npconmode-proper-probability-contract.R |only tests/testthat/test-npcopula.R | 364 ++ tests/testthat/test-npindexbw-nomad-payload-contract.R | 3 tests/testthat/test-npplreg-generalized-nn-bootstrap-contract.R | 10 tests/testthat/test-npplreg.R | 124 tests/testthat/test-npqreg.R | 245 + tests/testthat/test-npreg-adaptive-plot-bootstrap-contract.R | 10 tests/testthat/test-npreg-formula-response-name-contract.R | 2 tests/testthat/test-npreg-glp-higher-order.R | 105 tests/testthat/test-npreg.R | 28 tests/testthat/test-npregbw-degree-search-helper-contract.R | 57 tests/testthat/test-npreghat.R | 82 tests/testthat/test-plot-asymptotic-failfast-contract.R | 12 tests/testthat/test-plot-bootstrap-arg-contract.R | 24 tests/testthat/test-plot-bootstrap-conditional-frozen-ratio-contract.R | 26 tests/testthat/test-plot-bootstrap-frozen-payload-contract.R | 84 tests/testthat/test-plot-bootstrap-inid-index-semiparam-contract.R | 26 tests/testthat/test-plot-bootstrap-inid-ksum-fixed-contract.R | 16 tests/testthat/test-plot-bootstrap-inid-nn-index-contract.R | 8 tests/testthat/test-plot-bootstrap-inid-nn-smoke-contract.R | 26 tests/testthat/test-plot-bootstrap-inid-npscoef-contract.R | 8 tests/testthat/test-plot-bootstrap-inid-regression-plot-contract.R | 32 tests/testthat/test-plot-bootstrap-npindex-frozen-contract.R | 22 tests/testthat/test-plot-bootstrap-npplreg-frozen-contract.R | 12 tests/testthat/test-plot-bootstrap-npreg-frozen-contract.R | 12 tests/testthat/test-plot-bootstrap-npscoef-frozen-contract.R | 12 tests/testthat/test-plot-conditional-categorical-gradient-bootstrap.R | 10 tests/testthat/test-plot-conditional-gradients-bootstrap.R | 16 tests/testthat/test-plot-contract.R | 153 tests/testthat/test-plot-densdist-fixed-reuse.R | 12 tests/testthat/test-plot-fixed-bwtype-family-coverage.R | 12 tests/testthat/test-plot-guardrails-contract.R | 6 tests/testthat/test-plot-helper-semantics-contract.R | 8 tests/testthat/test-plot-quantile-categorical-gradient-bootstrap.R | 10 tests/testthat/test-plot-rbandwidth-categorical-gradient-bootstrap.R | 10 tests/testthat/test-plot-rbandwidth-ylab-contract.R | 35 tests/testthat/test-plot-regression-fixed-gradient-helper.R | 43 tests/testthat/test-plot-runtime-prototype-npcdens-slice-contract.R |only tests/testthat/test-plot-runtime-prototype-npindex-slice-contract.R |only tests/testthat/test-plot-runtime-prototype-npplreg-slice-contract.R |only tests/testthat/test-plot-runtime-prototype-npqreg-slice-contract.R |only tests/testthat/test-plot-runtime-prototype-npreg-slice-contract.R |only tests/testthat/test-plot-runtime-prototype-npscoef-slice-contract.R |only tests/testthat/test-plot-runtime-prototype-npudens-slice-contract.R |only tests/testthat/test-plot-runtime-purity-contract.R | 56 tests/testthat/test-plot-semiparam-wrapper-contract.R | 4 tests/testthat/test-plot-sibandwidth-fixed-gradient-bootstrap.R | 16 tests/testthat/test-plot-sibandwidth-helper-contract.R | 22 tests/testthat/test-plot-unconditional-engine-certification-contract.R | 52 tests/testthat/test-plot-warning-interface-contract.R |only tests/testthat/test-predict-newdata-contract.R | 174 tests/testthat/test-progress-bandwidth-common-contract.R | 59 tests/testthat/test-progress-npcopula-contract.R | 52 tests/testthat/test-progress-plot-helpers-contract.R | 52 tests/testthat/test-progress-static-contract.R | 10 tests/testthat/test-s3-bandwidth-predict-forwarders.R |only tests/testthat/test-s3-extractor-contracts.R |only tests/testthat/test-s3-internal-kbandwidth-contract.R |only tests/testthat/test-semihat.R | 130 tests/testthat/test-semiparam-formula-response-name-contract.R | 6 tests/testthat/test-semiparam-s3-newdata-hardening.R |only 197 files changed, 12040 insertions(+), 2434 deletions(-)
Title: Minimal LLM Chat Interface
Description: A minimal-dependency client for Large Language Model chat APIs.
Supports 'OpenAI' <https://openai.com/>, 'Anthropic' 'Claude'
<https://claude.com/>, 'Moonshot' 'Kimi' <https://www.moonshot.ai/>,
'Ollama' <https://ollama.com/>, and other 'OpenAI'-compatible
endpoints. Includes an agent loop with tool use and a 'Model Context
Protocol' client <https://modelcontextprotocol.io/>. API design is
derived from the 'ellmer' package, reimplemented with only base R,
'curl', and 'jsonlite'.
Author: Troy Hernandez [aut, cre] ,
cornball.ai [cph],
ellmer team [cph]
Maintainer: Troy Hernandez <troy@cornball.ai>
Diff between llm.api versions 0.1.1 dated 2026-04-16 and 0.1.3 dated 2026-05-15
DESCRIPTION | 11 LICENSE | 4 MD5 | 45 - NAMESPACE | 4 NEWS.md | 41 + R/agent.R | 804 ++++++++++++------------- R/chat.R | 521 +++++++++------- R/config.R | 46 - R/cost.R |only R/history-tool-calls.R |only R/mcp.R | 247 +++---- R/providers.R | 217 +++--- R/session.R | 179 ++--- R/sysdata.rda |only README.md | 2 inst/tinytest/test_agent_ollama_id_writeback.R |only inst/tinytest/test_cost.R |only inst/tinytest/test_history_tool_calls.R |only inst/tinytest/test_providers.R | 11 inst/tinytest/test_reasoning.R |only man/agent.Rd | 6 man/chat.Rd | 16 man/chat_claude.Rd | 6 man/chat_ollama.Rd | 2 man/chat_openai.Rd | 2 man/history_count_tool_calls.Rd |only man/history_tool_calls.Rd |only man/prices_snapshot_date.Rd |only man/provider_default_model.Rd |only 29 files changed, 1165 insertions(+), 999 deletions(-)
Title: Disaster Victim Identification
Description: Joint DNA-based disaster victim identification (DVI), as
described in Vigeland and Egeland (2021)
<doi:10.21203/rs.3.rs-296414/v1>. Identification is performed by
optimising the joint likelihood of all victim samples and reference
individuals. Individual identification probabilities, conditional on
all available information, are derived from the joint solution in the
form of posterior pairing probabilities. 'dvir' is part of the
'pedsuite' collection of packages for pedigree analysis.
Author: Magnus Dehli Vigeland [aut, cre] ,
Thore Egeland [aut]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between dvir versions 3.4.0 dated 2026-04-22 and 3.4.1 dated 2026-05-15
DESCRIPTION | 8 ++-- MD5 | 28 ++++++++--------- NEWS.md | 12 +++++++ R/amDrivenDVI.R | 85 +++++++++++++++++++++++++++++++++++++--------------- R/dviJoint.R | 15 +++++---- R/dviSolve.R | 17 ++++++---- R/familias2dvir.R | 75 +++++++++++++++++++++++++-------------------- R/pairwiseGLR.R | 2 - R/relabelDVI.R | 24 +++++++++----- R/utils.R | 4 ++ README.md | 9 +++-- build/partial.rdb |binary data/grave.rda |binary data/icmp.rda |binary man/dvir-package.Rd | 1 15 files changed, 179 insertions(+), 101 deletions(-)
Title: Dimensionality Reduction via Regression
Description: An Implementation of Dimensionality Reduction
via Regression using Kernel Ridge Regression.
Author: Guido Kraemer [aut, cre]
Maintainer: Guido Kraemer <guido.kraemer@uni-leipzig.de>
Diff between DRR versions 0.0.4 dated 2020-02-12 and 0.0.5 dated 2026-05-15
DESCRIPTION | 23 +- MD5 | 16 - README.md | 7 build/vignette.rds |binary inst/doc/comparePCA.R | 14 - inst/doc/comparePCA.Rmd | 2 inst/doc/comparePCA.html | 427 +++++++++++++++++++++++++++++++++++++---------- man/DRR-package.Rd | 9 vignettes/comparePCA.Rmd | 2 9 files changed, 380 insertions(+), 120 deletions(-)
Title: Large Language Model Evaluation
Description: A port of 'Inspect', a widely adopted 'Python' framework for
large language model evaluation. Specifically aimed at 'ellmer' users
who want to measure the effectiveness of their large language model-based
products, the package supports prompt engineering, tool usage,
multi-turn dialog, and model graded evaluations.
Author: Simon Couch [aut, cre] ,
Max Kuhn [ctb],
Hadley Wickham [ctb] ,
Mine Cetinkaya-Rundel [ctb] ,
Posit Software, PBC [cph, fnd]
Maintainer: Simon Couch <simon.couch@posit.co>
Diff between vitals versions 0.2.0 dated 2025-12-01 and 0.3.0 dated 2026-05-15
vitals-0.2.0/vitals/inst/test/solver.rda |only vitals-0.3.0/vitals/DESCRIPTION | 6 vitals-0.3.0/vitals/MD5 | 90 vitals-0.3.0/vitals/NAMESPACE | 1 vitals-0.3.0/vitals/NEWS.md | 34 vitals-0.3.0/vitals/R/bundle.R | 40 vitals-0.3.0/vitals/R/scorer-model.R | 6 vitals-0.3.0/vitals/R/solver.R | 138 vitals-0.3.0/vitals/R/task.R | 52 vitals-0.3.0/vitals/R/translate-events.R | 57 vitals-0.3.0/vitals/R/translate-messages.R | 4 vitals-0.3.0/vitals/R/translate-utils.R | 37 vitals-0.3.0/vitals/R/utils.R | 19 vitals-0.3.0/vitals/R/view.R | 284 vitals-0.3.0/vitals/inst/dist/assets/favicon.svg | 14 vitals-0.3.0/vitals/inst/dist/assets/index.css | 3396 vitals-0.3.0/vitals/inst/dist/assets/index.js |208557 ++++++---- vitals-0.3.0/vitals/inst/dist/index.html | 1 vitals-0.3.0/vitals/inst/regenerate-example-objects.R | 15 vitals-0.3.0/vitals/inst/test/structured.R |only vitals-0.3.0/vitals/man/Task.Rd | 27 vitals-0.3.0/vitals/man/generate.Rd | 25 vitals-0.3.0/vitals/man/generate_structured.Rd |only vitals-0.3.0/vitals/man/scorer_model.Rd | 4 vitals-0.3.0/vitals/man/vitals_view.Rd | 22 vitals-0.3.0/vitals/tests/testthat/_snaps/bundle.md | 7 vitals-0.3.0/vitals/tests/testthat/_snaps/solver.md | 8 vitals-0.3.0/vitals/tests/testthat/_vcr/scorer-model-graded-fact.yml | 4 vitals-0.3.0/vitals/tests/testthat/_vcr/scorer-model-graded-qa.yml | 4 vitals-0.3.0/vitals/tests/testthat/_vcr/solver-generate-structured-task.yml |only vitals-0.3.0/vitals/tests/testthat/_vcr/solver-generate-structured.yml |only vitals-0.3.0/vitals/tests/testthat/_vcr/task-basic.yml | 4 vitals-0.3.0/vitals/tests/testthat/_vcr/task-epochs.yml | 8 vitals-0.3.0/vitals/tests/testthat/_vcr/task-eval-epochs-precedence.yml | 4 vitals-0.3.0/vitals/tests/testthat/_vcr/task-id-format.yml |only vitals-0.3.0/vitals/tests/testthat/_vcr/task-log-dir-argument.yml | 4 vitals-0.3.0/vitals/tests/testthat/_vcr/task-new-epochs.yml | 8 vitals-0.3.0/vitals/tests/testthat/_vcr/task-token-usage.yml | 4 vitals-0.3.0/vitals/tests/testthat/_vcr/translate-anthropic-basic.yml | 4 vitals-0.3.0/vitals/tests/testthat/_vcr/translate-anthropic-scorer-tool-calls.yml | 12 vitals-0.3.0/vitals/tests/testthat/_vcr/translate-google-basic.yml | 80 vitals-0.3.0/vitals/tests/testthat/_vcr/translate-messages-system-prompts.yml | 4 vitals-0.3.0/vitals/tests/testthat/_vcr/translate-numeric-results.yml | 4 vitals-0.3.0/vitals/tests/testthat/_vcr/translate-openai-basic.yml | 4 vitals-0.3.0/vitals/tests/testthat/helper-.R | 43 vitals-0.3.0/vitals/tests/testthat/test-solver.R | 72 vitals-0.3.0/vitals/tests/testthat/test-task.R | 68 vitals-0.3.0/vitals/tests/testthat/test-translate-messages.R | 13 vitals-0.3.0/vitals/tests/testthat/test-translate-utils.R | 15 49 files changed, 141151 insertions(+), 72052 deletions(-)
Title: Generate Dockerfiles for 'Shiny' Applications
Description: Automates the creation of Dockerfiles for deploying 'Shiny'
applications. By integrating with 'renv' for dependency management
and leveraging Docker-based solutions, it simplifies the process of
containerizing 'Shiny' apps, ensuring reproducibility and consistency
across different environments. Additionally, it facilitates the setup
of CI/CD pipelines for building Docker images on both GitLab and
GitHub.
Author: Vincent Guyader [aut, cre]
Maintainer: Vincent Guyader <vincent@thinkr.fr>
Diff between shiny2docker versions 0.0.3 dated 2025-06-28 and 0.0.4 dated 2026-05-15
DESCRIPTION | 37 - LICENSE | 4 MD5 | 47 - NAMESPACE | 24 NEWS.md | 8 R/set_github_action.R | 136 ++-- R/set_gitlab_ci.R | 180 +++--- R/shiny2docker.R | 269 ++++----- README.md | 322 +++++----- inst/doc/introduction.R | 58 - inst/doc/introduction.Rmd | 220 +++---- inst/doc/introduction.html | 4 inst/docker-build.yml | 92 +-- inst/dummy_app/app.R | 102 +-- inst/gitlab-ci.yml | 48 - man/set_github_action.Rd | 54 - man/set_gitlab_ci.Rd | 66 +- man/shiny2docker.Rd | 197 +++--- tests/testthat.R | 24 tests/testthat/dummy_app/app.R | 102 +-- tests/testthat/dummy_app/renv.lock.cran.lock | 794 +++++++++++++-------------- tests/testthat/test-set_github_action.R |only tests/testthat/test-set_gitlab_ci.R | 143 ++++ tests/testthat/test-shiny2docker.R | 98 +++ vignettes/introduction.Rmd | 220 +++---- 25 files changed, 1744 insertions(+), 1505 deletions(-)
Title: Sparse Principal Component Analysis with Multiple Principal
Components
Description: Implements an algorithm for computing multiple sparse principal
components of a dataset. The method is based on Cory-Wright and Pauphilet
"Sparse PCA with Multiple Principal Components" (2022)
<doi:10.48550/arXiv.2209.14790>. The algorithm uses an iterative deflation
heuristic with a truncated power method applied at each iteration to compute
sparse principal components with controlled sparsity.
Author: Ryan Cory-Wright [aut, cph] ,
Jean Pauphilet [aut, cre, cph]
Maintainer: Jean Pauphilet <jpauphilet@london.edu>
Diff between msPCA versions 0.2.0 dated 2026-01-12 and 0.3.0 dated 2026-05-15
msPCA-0.2.0/msPCA/man/tpw.Rd |only msPCA-0.3.0/msPCA/DESCRIPTION | 8 - msPCA-0.3.0/msPCA/MD5 | 20 +- msPCA-0.3.0/msPCA/NAMESPACE | 2 msPCA-0.3.0/msPCA/NEWS.md | 7 msPCA-0.3.0/msPCA/R/RcppExports.R | 4 msPCA-0.3.0/msPCA/R/main.R | 9 - msPCA-0.3.0/msPCA/man/mspca.Rd | 11 - msPCA-0.3.0/msPCA/man/tpm.Rd |only msPCA-0.3.0/msPCA/src/Makevars | 3 msPCA-0.3.0/msPCA/src/RcppExports.cpp | 13 - msPCA-0.3.0/msPCA/src/msPCA_R_CPP.cpp | 250 ++++++++++++++++------------------ 12 files changed, 167 insertions(+), 160 deletions(-)
More information about mighty.metadata at CRAN
Permanent link
Title: Fit the Meta-D' Model of Confidence Ratings Using 'brms'
Description: Implementation of Bayesian regressions over the meta-d' model of
psychological data from two alternative forced choice tasks with
ordinal confidence ratings. For more information, see
Maniscalco & Lau (2012) <doi:10.1016/j.concog.2011.09.021>.
The package is a front-end to the 'brms' package, which facilitates a wide
range of regression designs, as well as tools for efficiently extracting
posterior estimates, plotting, and significance testing.
Author: Kevin O'Neill [aut, cre, cph] ,
Stephen Fleming [aut, cph]
Maintainer: Kevin O'Neill <kevin.o'neill@ucl.ac.uk>
Diff between hmetad versions 0.1.1 dated 2026-04-20 and 0.1.2 dated 2026-05-15
hmetad-0.1.1/hmetad/data |only hmetad-0.1.2/hmetad/DESCRIPTION | 12 hmetad-0.1.2/hmetad/MD5 | 79 - hmetad-0.1.2/hmetad/NAMESPACE | 3 hmetad-0.1.2/hmetad/NEWS.md | 21 hmetad-0.1.2/hmetad/R/data.R | 47 - hmetad-0.1.2/hmetad/R/epred_draws_metad.R | 11 hmetad-0.1.2/hmetad/R/hmetad.R | 138 ++- hmetad-0.1.2/hmetad/R/linpred_draws_metad.R | 45 hmetad-0.1.2/hmetad/R/mean_confidence_draws.R | 27 hmetad-0.1.2/hmetad/R/metacognitive_bias_draws.R | 13 hmetad-0.1.2/hmetad/R/metad_family.R | 95 +- hmetad-0.1.2/hmetad/R/predicted_draws_metad.R | 17 hmetad-0.1.2/hmetad/R/roc_draws.R | 30 hmetad-0.1.2/hmetad/R/simulate.R | 7 hmetad-0.1.2/hmetad/README.md | 301 +++--- hmetad-0.1.2/hmetad/inst/doc/alternative_distributions.R | 7 hmetad-0.1.2/hmetad/inst/doc/alternative_distributions.Rmd | 7 hmetad-0.1.2/hmetad/inst/doc/alternative_distributions.html | 33 hmetad-0.1.2/hmetad/inst/doc/categorical.Rmd | 250 ++--- hmetad-0.1.2/hmetad/inst/doc/categorical.html | 282 ++---- hmetad-0.1.2/hmetad/inst/doc/hmetad.R | 26 hmetad-0.1.2/hmetad/inst/doc/hmetad.Rmd | 47 - hmetad-0.1.2/hmetad/inst/doc/hmetad.html | 542 ++++++------ hmetad-0.1.2/hmetad/man/bias_draws.Rd | 17 hmetad-0.1.2/hmetad/man/epred_draws_metad.Rd | 17 hmetad-0.1.2/hmetad/man/example_data.Rd | 19 hmetad-0.1.2/hmetad/man/example_model.Rd | 21 hmetad-0.1.2/hmetad/man/hmetad-package.Rd | 3 hmetad-0.1.2/hmetad/man/linpred_draws_metad.Rd | 25 hmetad-0.1.2/hmetad/man/mean_conf_draws.Rd | 33 hmetad-0.1.2/hmetad/man/metac2_parameters.Rd |only hmetad-0.1.2/hmetad/man/predicted_draws_metad.Rd | 15 hmetad-0.1.2/hmetad/man/roc1_draws.Rd | 19 hmetad-0.1.2/hmetad/man/roc2_draws.Rd | 19 hmetad-0.1.2/hmetad/tests/testthat/test-hmetad.R | 15 hmetad-0.1.2/hmetad/tests/testthat/test-metad_family.R | 38 hmetad-0.1.2/hmetad/vignettes/alternative_distributions.Rmd | 7 hmetad-0.1.2/hmetad/vignettes/categorical.Rmd | 250 ++--- hmetad-0.1.2/hmetad/vignettes/hmetad.Rmd | 47 - hmetad-0.1.2/hmetad/vignettes/src/_categorical.Rmd | 17 41 files changed, 1419 insertions(+), 1183 deletions(-)
Title: Efficient Voting Methods for Committee Selection
Description: A fast 'Rcpp'-based implementation of polynomially-computable
voting theory methods for committee ranking and scoring. The package
includes methods such as Approval Voting (AV), Satisfaction Approval
Voting (SAV), sequential Proportional Approval Voting (PAV), and
sequential Phragmen's Rule. Weighted variants of these methods are
also provided, allowing for differential voter influence.
Author: John Zobolas [cre, aut] ,
Anne-Marie George [ctb]
Maintainer: John Zobolas <bblodfon@gmail.com>
Diff between fastVoteR versions 0.0.2 dated 2026-04-14 and 0.0.3 dated 2026-05-15
DESCRIPTION | 8 MD5 | 30 +-- NAMESPACE | 5 NEWS.md | 7 R/fastVoteR-package.R | 1 R/rank_candidates.R | 143 +++++++------- R/voting_methods.R | 328 +++++++++++++++++++++++++++------- man/av.Rd |only man/rank_candidates.Rd | 132 ++++++++----- man/sav.Rd |only man/seq_pav.Rd |only man/seq_phragmen.Rd |only tests/testthat/helper.R | 29 ++- tests/testthat/test_av.R | 10 - tests/testthat/test_rank_candidates.R | 27 +- tests/testthat/test_sav.R | 5 tests/testthat/test_seq_pav.R | 1 tests/testthat/test_seq_phragmen.R | 3 18 files changed, 502 insertions(+), 227 deletions(-)
Title: Polynomial Maximization Method for Non-Gaussian Regression
Description: Implements the Polynomial Maximization Method ('PMM') for parameter estimation
in linear and time series models when error distributions deviate from normality.
The 'PMM2' variant achieves lower variance parameter estimates compared to ordinary
least squares ('OLS') when errors exhibit significant skewness. The 'PMM3' variant
(S=3) targets symmetric platykurtic error distributions, reducing variance when
excess kurtosis is negative. Includes automatic method selection ('pmm_dispatch'),
linear regression, 'AR'/'MA'/'ARMA'/'ARIMA' models, and bootstrap inference.
Methodology described in Zabolotnii, Warsza, and Tkachenko (2018) <doi:10.1007/978-3-319-77179-3_75>,
Zabolotnii, Tkachenko, and Warsza (2022) <doi:10.1007/978-3-031-03502-9_37>, and
Zabolotnii, Tkachenko, and Warsza (2023) <doi:10.1007/978-3-031-25844-2_21>, and
Zabolotnii (2025) <doi:10.48550/arXiv.2511.07059>.
Author: Serhii Zabolotnii [aut, cre]
Maintainer: Serhii Zabolotnii <zabolotniua@gmail.com>
Diff between EstemPMM versions 0.3.1 dated 2026-04-07 and 0.3.2 dated 2026-05-15
EstemPMM-0.3.1/EstemPMM/vignettes/seasonal_models.Rmd.draft |only EstemPMM-0.3.2/EstemPMM/DESCRIPTION | 13 - EstemPMM-0.3.2/EstemPMM/MD5 | 85 ++++-- EstemPMM-0.3.2/EstemPMM/NAMESPACE | 10 EstemPMM-0.3.2/EstemPMM/R/data.R | 11 EstemPMM-0.3.2/EstemPMM/R/pmm2_main.R | 102 +++++++ EstemPMM-0.3.2/EstemPMM/R/pmm2_package.R | 2 EstemPMM-0.3.2/EstemPMM/R/pmm2_ts_methods.R | 129 ++++++++++ EstemPMM-0.3.2/EstemPMM/R/pmm3_main.R | 49 +++ EstemPMM-0.3.2/EstemPMM/R/pmm3_ts_methods.R | 51 +++ EstemPMM-0.3.2/EstemPMM/README.md | 3 EstemPMM-0.3.2/EstemPMM/build/vignette.rds |binary EstemPMM-0.3.2/EstemPMM/inst/doc/bootstrap_inference.html | 4 EstemPMM-0.3.2/EstemPMM/inst/doc/pmm2_introduction.R | 2 EstemPMM-0.3.2/EstemPMM/inst/doc/pmm2_introduction.Rmd | 2 EstemPMM-0.3.2/EstemPMM/inst/doc/pmm2_introduction.html | 70 ++--- EstemPMM-0.3.2/EstemPMM/inst/doc/pmm2_time_series.html | 4 EstemPMM-0.3.2/EstemPMM/inst/doc/pmm3_symmetric_errors.R | 40 --- EstemPMM-0.3.2/EstemPMM/inst/doc/pmm3_symmetric_errors.Rmd | 57 +--- EstemPMM-0.3.2/EstemPMM/inst/doc/pmm3_symmetric_errors.html | 91 ++----- EstemPMM-0.3.2/EstemPMM/inst/doc/pmm3_time_series.html | 4 EstemPMM-0.3.2/EstemPMM/inst/doc/seasonal_models.R |only EstemPMM-0.3.2/EstemPMM/inst/doc/seasonal_models.Rmd |only EstemPMM-0.3.2/EstemPMM/inst/doc/seasonal_models.html |only EstemPMM-0.3.2/EstemPMM/man/AIC-TS2fit-method.Rd |only EstemPMM-0.3.2/EstemPMM/man/BIC-PMM2fit-method.Rd |only EstemPMM-0.3.2/EstemPMM/man/BIC-PMM3fit-method.Rd |only EstemPMM-0.3.2/EstemPMM/man/BIC-TS2fit-method.Rd |only EstemPMM-0.3.2/EstemPMM/man/BIC-TS3fit-method.Rd |only EstemPMM-0.3.2/EstemPMM/man/EstemPMM-package.Rd | 5 EstemPMM-0.3.2/EstemPMM/man/ar_pmm2.Rd | 10 EstemPMM-0.3.2/EstemPMM/man/arima_pmm2.Rd | 10 EstemPMM-0.3.2/EstemPMM/man/arma_pmm2.Rd | 10 EstemPMM-0.3.2/EstemPMM/man/auto_mpg.Rd | 11 EstemPMM-0.3.2/EstemPMM/man/confint-PMM2fit-method.Rd |only EstemPMM-0.3.2/EstemPMM/man/confint-TS2fit-method.Rd |only EstemPMM-0.3.2/EstemPMM/man/logLik-PMM2fit-method.Rd |only EstemPMM-0.3.2/EstemPMM/man/logLik-PMM3fit-method.Rd |only EstemPMM-0.3.2/EstemPMM/man/logLik-TS2fit-method.Rd |only EstemPMM-0.3.2/EstemPMM/man/logLik-TS3fit-method.Rd |only EstemPMM-0.3.2/EstemPMM/man/ma_pmm2.Rd | 10 EstemPMM-0.3.2/EstemPMM/man/nobs-PMM2fit-method.Rd |only EstemPMM-0.3.2/EstemPMM/man/nobs-PMM3fit-method.Rd |only EstemPMM-0.3.2/EstemPMM/man/nobs-TS2fit-method.Rd |only EstemPMM-0.3.2/EstemPMM/man/nobs-TS3fit-method.Rd |only EstemPMM-0.3.2/EstemPMM/man/ts_pmm2.Rd | 10 EstemPMM-0.3.2/EstemPMM/man/vcov-PMM2fit-method.Rd |only EstemPMM-0.3.2/EstemPMM/man/vcov-TS2fit-method.Rd |only EstemPMM-0.3.2/EstemPMM/tests/testthat/Rplots.pdf |only EstemPMM-0.3.2/EstemPMM/tests/testthat/test-coverage-boost-2.R |only EstemPMM-0.3.2/EstemPMM/tests/testthat/test-coverage-boost-3.R |only EstemPMM-0.3.2/EstemPMM/tests/testthat/test-coverage-boost-4.R |only EstemPMM-0.3.2/EstemPMM/tests/testthat/test-coverage-boost-5.R |only EstemPMM-0.3.2/EstemPMM/tests/testthat/test-coverage-boost.R |only EstemPMM-0.3.2/EstemPMM/tests/testthat/test-s4-generics.R |only EstemPMM-0.3.2/EstemPMM/vignettes/pmm2_introduction.Rmd | 2 EstemPMM-0.3.2/EstemPMM/vignettes/pmm3_symmetric_errors.Rmd | 57 +--- EstemPMM-0.3.2/EstemPMM/vignettes/seasonal_models.Rmd |only 58 files changed, 579 insertions(+), 275 deletions(-)
Title: Translate Datasets to Portuguese
Description: Este pacote traduz os seguintes
conjuntos de dados: 'airlines', 'airports', 'ames_raw', 'AwardsManagers',
'babynames', 'Batting', 'diamonds', 'faithful', 'fueleconomy',
'Fielding', 'flights', 'gapminder', 'gss_cat', 'iris', 'Managers',
'mpg', 'mtcars', 'atmos', 'penguins', 'People, 'Pitching', 'pixarfilms','planes',
'presidential', 'table1', 'table2', 'table3', 'table4a', 'table4b',
'table5', 'vehicles', 'weather', 'who'. English: It provides a
Portuguese translated version of the datasets listed above.
Author: Riva Quiroga [aut, cre] ,
Beatriz Milz [aut] ,
Sara Mortara [aut] ,
Andrea Sanchez-Tapia [aut] ,
Alejandra Andrea Tapia Silva [aut] ,
Beatriz Maurer Costa [aut],
Jean Prado [aut] ,
Renata Hirota [aut] ,
William Amorim [aut] ,
Emmanuelle Rodrigues Nun [...truncated...]
Maintainer: Riva Quiroga <riva.quiroga@uc.cl>
Diff between dados versions 0.1.0 dated 2022-02-24 and 0.1.1 dated 2026-05-15
dados-0.1.0/dados/inst/scripts/arremesadores.txt |only dados-0.1.1/dados/DESCRIPTION | 50 ++--- dados-0.1.1/dados/MD5 | 120 ++++++------ dados-0.1.1/dados/NEWS.md | 4 dados-0.1.1/dados/R/stringr.R |only dados-0.1.1/dados/README.md | 109 +++++----- dados-0.1.1/dados/data/data.R | 90 ++++----- dados-0.1.1/dados/data/frases.rda |only dados-0.1.1/dados/data/frutas.rda |only dados-0.1.1/dados/data/palavras.rda |only dados-0.1.1/dados/inst/scripts/arremessadores.txt |only dados-0.1.1/dados/inst/scripts/cms_paciente_experiencia.txt |only dados-0.1.1/dados/inst/scripts/dados_oms2.txt |only dados-0.1.1/dados/inst/scripts/nucleo_familiar.txt |only dados-0.1.1/dados/inst/scripts/top100musicas.txt |only dados-0.1.1/dados/inst/specs/ames.yml | 2 dados-0.1.1/dados/inst/specs/billboard.yml |only dados-0.1.1/dados/inst/specs/cms_patient_experience.yml |only dados-0.1.1/dados/inst/specs/flights.yml | 4 dados-0.1.1/dados/inst/specs/gss-cats.yml | 2 dados-0.1.1/dados/inst/specs/household.yml |only dados-0.1.1/dados/inst/specs/pitching.yml | 10 - dados-0.1.1/dados/inst/specs/presidential.yml | 6 dados-0.1.1/dados/inst/specs/who.yml | 2 dados-0.1.1/dados/inst/specs/who2.yml |only dados-0.1.1/dados/man/aeroportos.rd | 1 dados-0.1.1/dados/man/arremessadores.rd |only dados-0.1.1/dados/man/avioes.rd | 1 dados-0.1.1/dados/man/bebes.rd | 1 dados-0.1.1/dados/man/casas.rd | 3 dados-0.1.1/dados/man/clima.rd | 1 dados-0.1.1/dados/man/cms_paciente_experiencia.rd |only dados-0.1.1/dados/man/companhias_aereas.rd | 1 dados-0.1.1/dados/man/comuns.rd | 1 dados-0.1.1/dados/man/dados-package.Rd | 3 dados-0.1.1/dados/man/dados-stringr.Rd |only dados-0.1.1/dados/man/dados_atmosfera.rd | 1 dados-0.1.1/dados/man/dados_gapminder.rd | 1 dados-0.1.1/dados/man/dados_iris.rd | 1 dados-0.1.1/dados/man/dados_oms.rd | 3 dados-0.1.1/dados/man/dados_oms2.rd |only dados-0.1.1/dados/man/dados_starwars.rd | 1 dados-0.1.1/dados/man/diamante.rd | 1 dados-0.1.1/dados/man/gerentes.rd | 1 dados-0.1.1/dados/man/jardineiros.rd | 1 dados-0.1.1/dados/man/milhas.rd | 1 dados-0.1.1/dados/man/mtcarros.rd | 1 dados-0.1.1/dados/man/nucleo_familiar.rd |only dados-0.1.1/dados/man/pessoas.rd | 1 dados-0.1.1/dados/man/pinguins.rd | 1 dados-0.1.1/dados/man/pixar_avalicao_publico.rd | 1 dados-0.1.1/dados/man/pixar_bilheteria.rd | 1 dados-0.1.1/dados/man/pixar_equipe.rd | 1 dados-0.1.1/dados/man/pixar_filmes.rd | 1 dados-0.1.1/dados/man/pixar_generos.rd | 1 dados-0.1.1/dados/man/pixar_oscars.rd | 1 dados-0.1.1/dados/man/premios_gerentes.rd | 1 dados-0.1.1/dados/man/presidentes_eua.rd | 7 dados-0.1.1/dados/man/questionario.rd | 1 dados-0.1.1/dados/man/rebatedores.rd | 1 dados-0.1.1/dados/man/salarios.rd | 1 dados-0.1.1/dados/man/tabela1.rd | 1 dados-0.1.1/dados/man/tabela2.rd | 1 dados-0.1.1/dados/man/tabela3.rd | 1 dados-0.1.1/dados/man/tabela4a.rd | 1 dados-0.1.1/dados/man/tabela4b.rd | 1 dados-0.1.1/dados/man/tabela5.rd | 1 dados-0.1.1/dados/man/top100musicas.rd |only dados-0.1.1/dados/man/veiculos.rd | 1 dados-0.1.1/dados/man/velho_fiel.rd | 1 dados-0.1.1/dados/man/voos.rd | 3 71 files changed, 225 insertions(+), 228 deletions(-)
Title: Get Federal Lobbying Disclosures
Description: Gives users seeking federal lobbying disclosures an easier way to query the API maintained by the Senate federal lobbying disclosures database <https://lda.gov/api/redoc/v1/> to find out how much companies and other entities are spending to lobby Congress and the federal government. It allows for search terms such as keywords, time periods and entity names. It then attempts to clean, or at least flag, filings that could provide incorrect results when seeking to answer the question: How much is being spent on lobbying our Congress and the administration and what issues do they care about?
Author: Chris Cioffi [aut, cre],
Aarushi Sahejpal [aut, ctb]
Maintainer: Chris Cioffi <chrisjcioffi@gmail.com>
Diff between lobbyR versions 0.1.0 dated 2026-01-13 and 0.1.1 dated 2026-05-15
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/get_filings.R | 20 +++++++++++--------- R/set_senate_api_key.R | 4 ++-- README.md | 4 ++-- man/get_filings.Rd | 6 ++++-- man/lobbyR-package.Rd | 2 +- man/set_senate_api_key.Rd | 2 +- 8 files changed, 32 insertions(+), 28 deletions(-)
Title: High-Dimensional Cure Models
Description: Provides functions for fitting various penalized parametric and semi-parametric mixture cure models with different penalty functions, testing for a significant cure fraction, and testing for sufficient follow-up as described in Fu et al (2022)<doi:10.1002/sim.9513> and Archer et al (2024)<doi:10.1186/s13045-024-01553-6>. False discovery rate controlled variable selection is provided using model-X knock-offs.
Author: Han Fu [aut],
Kellie J. Archer [aut, cre] ,
Tung Lam Nguyen [rev] ,
Panagiotis Papastamoulis [rev]
Maintainer: Kellie J. Archer <archer.43@osu.edu>
Diff between hdcuremodels versions 0.0.6 dated 2025-12-03 and 0.0.7 dated 2026-05-15
DESCRIPTION | 13 MD5 | 48 +- R/cureem.R | 4 R/zzz.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 11 inst/doc/hdcuremodels.html | 121 ++++++- man/amltest.Rd | 648 ++++++++++++++++++++-------------------- man/amltrain.Rd | 648 ++++++++++++++++++++-------------------- man/auc_mcm.Rd | 20 - man/coef.mixturecure.Rd | 20 - man/concordance_mcm.Rd | 20 - man/dim.mixturecure.Rd | 2 man/formula.mixturecure.Rd | 4 man/generate_cure_data.Rd | 4 man/hdcuremodels-package.Rd | 1 man/logLik.mixturecure.Rd | 20 - man/nobs.mixturecure.Rd | 4 man/nonzerocure_test.Rd | 2 man/npar_mixturecure.Rd | 20 - man/pediatric_flt3.Rd | 408 ++++++++++++------------- man/plot.mixturecure.Rd | 20 - man/predict.mixturecure.Rd | 20 - tests/testthat/test-cv_cureem.R | 2 25 files changed, 1076 insertions(+), 986 deletions(-)
Title: Winsorized ARMA Estimation for Higher-Order Stochastic
Volatility Models
Description: Estimation, simulation, hypothesis testing, AR-order selection,
and forecasting for univariate higher-order stochastic volatility SV(p)
models. Supports Gaussian, Student-t, and Generalized Error Distribution
(GED) innovations, with optional leverage effects. Estimation uses
closed-form Winsorized ARMA-SV (W-ARMA-SV) moment-based methods that
avoid numerical optimization. Hypothesis testing includes Local Monte
Carlo (LMC) and Maximized Monte Carlo (MMC) procedures for leverage
effects, heavy tails, and autoregressive order. AR-order selection is
also available via information criteria (BIC/AIC) using the Kalman-filter
quasi-likelihood and the Hannan-Rissanen ARMA residual variance.
Forecasting is based on Kalman filtering and smoothing. See Ahsan and
Dufour (2021) <doi:10.1016/j.jeconom.2021.03.008>, Ahsan, Dufour, and
Rodriguez-Rondon (2025) <doi:10.1111/jtsa.12851>, and Ahsan, Dufour, and
Rodriguez-Rondon (2026) <doi:10.34989/swp-2026-8> for details.
Author: Gabriel Rodriguez-Rondon [aut, cre] ,
Md. Nazmul Ahsan [aut],
Jean-Marie Dufour [aut]
Maintainer: Gabriel Rodriguez-Rondon <gabriel.rodriguezrondon@mail.mcgill.ca>
Diff between wARMASVp versions 0.1.0 dated 2026-04-22 and 0.2.0 dated 2026-05-15
DESCRIPTION | 41 +- MD5 | 62 ++-- NAMESPACE | 3 NEWS.md | 64 ++++ R/RcppExports.R | 8 R/estim.R | 7 R/forecast.R | 79 ++++- R/kalman.R | 44 ++- R/svp_information_criteria.R |only R/svp_internal.R | 397 ++++++++++++----------------- R/svp_test.R | 212 ++++++++++++--- R/wARMASVp-package.R | 14 - README.md | 6 build/partial.rdb |only inst/CITATION | 34 +- inst/doc/wARMASVp-intro.R | 8 inst/doc/wARMASVp-intro.Rmd | 39 ++ inst/doc/wARMASVp-intro.html | 63 +++- man/filter_svp.Rd | 16 + man/forecast_svp.Rd | 8 man/lmc_ar.Rd | 27 + man/mmc_ar.Rd | 17 + man/svp.Rd | 7 man/svp_AR_order.Rd |only man/svp_IC.Rd |only man/wARMASVp-package.Rd | 16 - src/RcppExports.cpp | 22 + src/kalman_filter.cpp | 59 ++++ src/particle_filter.cpp | 25 - src/utils_cpp.cpp | 17 + tests/testthat/Rplots.pdf |binary tests/testthat/test-filter-bug-fixes.R |only tests/testthat/test-information-criteria.R |only tests/testthat/test-testing.R | 82 +++++ vignettes/wARMASVp-intro.Rmd | 39 ++ 35 files changed, 994 insertions(+), 422 deletions(-)
Title: Several Examined and Concealed States-Dependent Speciation and
Extinction
Description: Simultaneously infers state-dependent diversification across
two or more states of a single or multiple traits while accounting for the
role of a possible concealed trait. See Herrera-Alsina et al. (2019)
<doi:10.1093/sysbio/syy057>.
Author: Leonel Herrera Alsina [aut] ,
Paul van Els [aut] ,
Thijs Janzen [ctb] ,
Hanno Hildenbrandt [ctb] ,
Pedro Santos Neves [ctb] ,
Rampal S. Etienne [cre, aut]
Maintainer: Rampal S. Etienne <r.s.etienne@rug.nl>
Diff between secsse versions 3.5.0 dated 2025-07-24 and 3.7.0 dated 2026-05-15
DESCRIPTION | 13 MD5 | 123 NEWS.md | 36 R/RcppExports.R | 4 R/default_params_doc.R | 34 R/seccse_multi_loglik.R | 81 R/seccse_plot.R | 12 R/secsse_loglik.R | 166 R/secsse_ml.R | 148 R/secsse_ml_func_def_pars.R | 14 R/secsse_prep.R | 53 R/secsse_sim.R | 198 R/secsse_single_branch.R | 71 R/secsse_utils.R | 291 - inst/doc/complete_tree.Rmd | 2 inst/doc/complete_tree.html | 675 --- inst/doc/plotting_states.R | 12 inst/doc/plotting_states.Rmd | 17 inst/doc/plotting_states.html | 233 - inst/doc/sim_with_secsse.html | 21 inst/doc/starting_secsse.R | 6 inst/doc/starting_secsse.Rmd | 22 inst/doc/starting_secsse.html | 6084 +---------------------------- man/cla_secsse_loglik.Rd | 29 man/cla_secsse_ml.Rd | 30 man/cla_secsse_ml_func_def_pars.Rd | 24 man/default_params_doc.Rd | 37 man/plot_state_exact.Rd | 18 man/q_doubletrans.Rd | 30 man/secsse_loglik.Rd | 42 man/secsse_loglik_eval.Rd | 13 man/secsse_ml.Rd | 48 man/secsse_ml_func_def_pars.Rd | 18 man/secsse_sim.Rd | 15 man/secsse_single_branch_loglik.Rd | 26 src/Makevars.win | 1 src/RcppExports.cpp | 8 src/config.h | 4 src/mutable_dist.h |only src/secsse_eval.cpp | 11 src/secsse_loglik.cpp | 15 src/secsse_loglik.h | 48 src/secsse_rhs.h | 17 src/secsse_sim.cpp | 36 src/secsse_sim2.h | 214 - src/tbb_stub.h |only tests/testthat/Rplots.pdf |binary tests/testthat/test_build_states.R |only tests/testthat/test_cla_secsse_ml.R | 3 tests/testthat/test_geosse.R | 19 tests/testthat/test_hisse.R | 17 tests/testthat/test_lambda_setup.R | 59 tests/testthat/test_ml_par.R | 3 tests/testthat/test_multiphylo.R | 131 tests/testthat/test_plotting.R | 82 tests/testthat/test_root_state.R |only tests/testthat/test_secsse_cla_ct.R | 17 tests/testthat/test_secsse_ct.R | 28 tests/testthat/test_secsse_sim.R | 233 - tests/testthat/test_secsse_vs_cla_secsse.R | 4 tests/testthat/test_single_branch.R | 6 tests/testthat/test_weights.R |only vignettes/complete_tree.Rmd | 2 vignettes/plotting_states.Rmd | 17 vignettes/starting_secsse.Rmd | 22 65 files changed, 2042 insertions(+), 7601 deletions(-)
Title: Principal Stratification Analysis in R
Description: Estimating causal effects in the presence of post-treatment confounding
using principal stratification. 'PStrata' allows for customized monotonicity
assumptions and exclusion restriction assumptions, with automatic full Bayesian
inference supported by 'Stan'. The main workflow is PStrataModel() to specify the
model, fit() to run MCMC sampling, estimate() to extract potential outcomes, and
contrast() to compute causal effects. Visualization tools are provided for
diagnosis and interpretation. See Liu and Li (2023)
<doi:10.48550/arXiv.2304.02740> for details.
Author: Bo Liu [aut, cre],
Fan Li [ctb]
Maintainer: Bo Liu <bo.liu1997@gmail.com>
Diff between PStrata versions 1.0.0 dated 2026-05-14 and 1.0.1 dated 2026-05-15
DESCRIPTION | 10 - MD5 | 14 +- R/PStrataModel.R | 4 R/fit.R | 18 +-- R/make_stancode.R | 2 README.md | 292 +++++++++++++++++++++++++++++---------------------- man/fit.Rd | 2 man/make_stancode.Rd | 2 8 files changed, 198 insertions(+), 146 deletions(-)
Title: Immune Oncology Biological Research
Description: Provides six modules for tumor microenvironment (TME)
analysis based on multi-omics data. These modules cover data
preprocessing, TME estimation, TME infiltrating patterns, cellular
interactions, genome and TME interaction, and visualization for TME
relevant features, as well as modelling based on key features. It
integrates multiple microenvironmental analysis algorithms and
signature estimation methods, simplifying the analysis and downstream
visualization of the TME. In addition to providing a quick and easy
way to construct gene signatures from single-cell RNA-seq data, it
also provides a way to construct a reference matrix for TME
deconvolution from single-cell RNA-seq data. The analysis pipeline and
feature visualization are user-friendly and provide a comprehensive
description of the complex TME, offering insights into tumour-immune
interactions (Zeng D, et al. (2024)
<doi:10.1016/j.crmeth.2024.100910>. Fang Y, et al. (2025)
<doi:10.1002/mdr2.70001>).
Author: Dongqiang Zeng [aut],
Yiran Fang [aut],
Shixiang Wang [aut, cre] ,
Qingcong Luo [aut],
Hongqian Qian [aut]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between IOBR versions 2.2.0 dated 2026-04-22 and 2.2.1 dated 2026-05-15
DESCRIPTION | 6 - MD5 | 37 ++++++----- NAMESPACE | 3 NEWS.md | 14 ++++ R/LR_cal.R | 10 ++- R/batch_surv.R | 2 R/download_data.R | 131 +++++++++++++++++++++++++++++++++++++---- R/get_cor_matrix.R | 74 ++++++++++++++--------- R/iobr_pca.R | 2 R/percent_bar.R | 4 - R/sig_box.R | 59 ++++++++++++------ R/sig_heatmap.R | 16 ++--- R/sig_roc.R | 8 +- README.md | 33 ++++++++++ inst/doc/IOBR-user-manual.html | 4 - man/LR_cal.Rd | 10 ++- man/clear_iobr_cache.Rd | 9 ++ man/download_iobr_data.Rd | 13 +++- man/get_iobr_cache_dir.Rd |only man/reset_iobr_cache_dir.Rd |only man/set_iobr_cache_dir.Rd |only 21 files changed, 333 insertions(+), 102 deletions(-)
Title: Creating Correspondence Tables Between Two Statistical
Classifications
Description: A candidate correspondence table between two classifications can be created when there are correspondence tables leading from the first classification to the second one via intermediate 'pivot' classifications.
The correspondence table between two statistical classifications can be updated when one of the classifications gets updated to a new version.
Author: Vasilis Chasiotis [aut] ,
Photis Stavropoulos [aut] ,
Martin Karlberg [aut],
Matyas Meszaros [cre],
Martina Patone [aut],
Erkand Muraku [aut],
Clement Thomas [aut],
Loic Bienvenu [aut],
Mauro Baldacchini [aut],
Khadija Sossey-Lallemand [aut],
Mark va [...truncated...]
Maintainer: Matyas Meszaros <matyas.meszaros@ec.europa.eu>
Diff between correspondenceTables versions 1.0.1 dated 2026-05-12 and 1.0.2 dated 2026-05-15
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ inst/tinytest/test_newCorrespondenceTable.R | 9 +++------ 4 files changed, 14 insertions(+), 13 deletions(-)
More information about correspondenceTables at CRAN
Permanent link
Title: Binscatter Estimation and Inference
Description: Provides tools for statistical analysis using the binscatter methods developed by Cattaneo, Crump, Farrell and Feng (2024) <https://nppackages.github.io/references/Cattaneo-Crump-Farrell-Feng_2024_AER.pdf>, Cattaneo, Crump, Farrell and Feng (2025) <https://nppackages.github.io/references/Cattaneo-Crump-Farrell-Feng_2025_Stata.pdf> and Cattaneo, Crump, Farrell and Feng (2026) <https://nppackages.github.io/references/Cattaneo-Crump-Farrell-Feng_2026_RESTAT.pdf>. Binscatter provides a flexible way of describing the relationship between two variables based on partitioning/binning of the independent variable of interest. binsreg(), binsqreg() and binsglm() implement binscatter least squares regression, quantile regression and generalized linear regression respectively, with particular focus on constructing binned scatter plots. They also implement robust (pointwise and uniform) inference of regression functions and derivatives thereof. binstest() implements hypothesis test [...truncated...]
Author: Matias D. Cattaneo [aut, cre],
Richard K. Crump [aut],
Max H. Farrell [aut],
Yingjie Feng [aut]
Maintainer: Matias D. Cattaneo <matias.d.cattaneo@gmail.com>
Diff between binsreg versions 1.1 dated 2024-07-23 and 2.0 dated 2026-05-15
DESCRIPTION | 31 ++-- MD5 | 41 +++-- NAMESPACE | 89 ++++++----- R/binsglm.R | 123 +++++++++------- R/binspwc.R | 69 ++++----- R/binsqreg.R | 117 ++++++++------- R/binsreg-package.R | 28 ++- R/binsreg.R | 117 ++++++++------- R/binsreg_functions.R | 374 +++++++++++++++++++++++++++++++++++++++---------- R/binsregselect.R | 22 +- R/binstest.R | 99 +++++++----- man/binsglm.Rd | 35 ++-- man/binspwc.Rd | 33 ++-- man/binsqreg.Rd | 35 ++-- man/binsreg-package.Rd | 33 +++- man/binsreg.Rd | 36 +++- man/binsregselect.Rd | 22 +- man/binstest.Rd | 25 +-- tests |only 19 files changed, 865 insertions(+), 464 deletions(-)
Title: Manipulation of Microsoft Word and PowerPoint Documents
Description: Access and manipulate 'Microsoft Word', 'RTF' and 'Microsoft
PowerPoint' documents from R. The package focuses on tabular and
graphical reporting from R; it also provides two functions that let
users get document content into data objects. A set of functions lets
add and remove images, tables and paragraphs of text in new or
existing documents. The package does not require any installation of
Microsoft products to be able to write Microsoft files.
Author: David Gohel [aut, cre],
Stefan Moog [aut],
Mark Heckmann [aut] ,
ArData [cph],
Frank Hangler [ctb] ,
Liz Sander [ctb] ,
Anton Victorson [ctb] ,
Jon Calder [ctb] ,
John Harrold [ctb] ,
John Muschelli [ctb] ,
Bill Denney [ctb] ,
Nikolai Beck [ctb] ,
Gr [...truncated...]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between officer versions 0.7.4 dated 2026-04-24 and 0.7.5 dated 2026-05-15
DESCRIPTION | 8 MD5 | 260 ++++++++--------- NAMESPACE | 8 NEWS.md | 54 +++ R/docx_section.R | 26 + R/fortify_docx.R | 16 - R/ooxml.R | 20 + R/ooxml_run_objects.R | 14 R/read_xlsx.R | 388 ++++++++++++++++++++----- R/rtf.R | 457 ++++++++++++++++++++++++++---- R/shape_properties.R | 8 R/utils.R | 6 README.md | 72 +++- man/add_slide.Rd | 8 man/annotate_base.Rd | 18 - man/block_caption.Rd | 24 - man/block_gg.Rd | 24 - man/block_list.Rd | 24 - man/block_list_items.Rd | 24 - man/block_pour_docx.Rd | 24 - man/block_section.Rd | 24 - man/block_table.Rd | 24 - man/block_toc.Rd | 24 - man/body_add_blocks.Rd | 28 - man/body_add_break.Rd | 28 - man/body_add_caption.Rd | 28 - man/body_add_docx.Rd | 28 - man/body_add_fpar.Rd | 28 - man/body_add_gg.Rd | 28 - man/body_add_img.Rd | 28 - man/body_add_list.Rd | 28 - man/body_add_par.Rd | 28 - man/body_add_plot.Rd | 28 - man/body_add_table.Rd | 28 - man/body_add_toc.Rd | 28 - man/body_append_context.Rd | 28 - man/body_end_block_section.Rd | 40 ++ man/body_end_section_columns.Rd | 14 man/body_end_section_columns_landscape.Rd | 14 man/body_end_section_continuous.Rd | 14 man/body_end_section_landscape.Rd | 14 man/body_end_section_portrait.Rd | 14 man/body_import_docx.Rd | 28 - man/body_set_default_section.Rd | 14 man/color_scheme.Rd | 18 - man/doc_properties.Rd | 30 - man/docx_bookmarks.Rd | 12 man/docx_dim.Rd | 12 man/external_img.Rd | 32 +- man/floating_external_img.Rd | 32 +- man/fortify_location.Rd | 20 - man/fp_border.Rd | 12 man/fp_cell.Rd | 12 man/fp_par.Rd | 12 man/fp_tab.Rd | 12 man/fp_tabs.Rd | 12 man/fp_text.Rd | 12 man/fpar.Rd | 24 - man/ftext.Rd | 32 +- man/get_reference_value.Rd | 20 - man/hyperlink_ftext.Rd | 32 +- man/layout_properties.Rd | 18 - man/layout_summary.Rd | 18 - man/length.rdocx.Rd | 12 man/length.rpptx.Rd | 18 - man/list_item.Rd | 24 - man/move_slide.Rd | 8 man/officer.Rd | 1 man/on_slide.Rd | 8 man/ooxml_chart_uris.Rd |only man/opts_current_table.Rd | 20 - man/page_mar.Rd | 8 man/page_size.Rd | 8 man/ph_hyperlink.Rd | 6 man/ph_location.Rd | 16 - man/ph_location_fullsize.Rd | 16 - man/ph_location_id.Rd | 16 - man/ph_location_label.Rd | 16 - man/ph_location_left.Rd | 16 - man/ph_location_right.Rd | 16 - man/ph_location_template.Rd | 16 - man/ph_location_type.Rd | 16 - man/ph_remove.Rd | 6 man/ph_slidelink.Rd | 6 man/plot_instr.Rd | 24 - man/plot_layout_properties.Rd | 18 - man/prop_section.Rd | 8 man/prop_table.Rd | 12 man/remove_slide.Rd | 8 man/rtf_add.Rd | 160 ++++++++++ man/rtf_doc.Rd | 36 ++ man/rtf_set_paragraph_style.Rd |only man/rtf_styles_info.Rd |only man/run_autonum.Rd | 38 +- man/run_bookmark.Rd | 32 +- man/run_columnbreak.Rd | 32 +- man/run_comment.Rd | 32 +- man/run_footnote.Rd | 32 +- man/run_footnoteref.Rd | 32 +- man/run_linebreak.Rd | 32 +- man/run_pagebreak.Rd | 32 +- man/run_reference.Rd | 38 +- man/run_tab.Rd | 32 +- man/run_word_field.Rd | 51 +-- man/run_wordtext.Rd | 32 +- man/section_columns.Rd | 8 man/set_doc_properties.Rd | 12 man/set_notes.Rd | 8 man/shape_properties_tags.Rd | 20 - man/sheet_add_drawing.Rd | 33 +- man/slide_size.Rd | 18 - man/slide_summary.Rd | 18 - man/solid_fill.Rd |only man/sp_line.Rd | 10 man/sp_lineend.Rd | 4 man/str_encode_to_rtf.Rd | 20 - man/styles_info.Rd | 12 man/table_colwidths.Rd | 12 man/table_conditional_formatting.Rd | 12 man/table_layout.Rd | 12 man/table_stylenames.Rd | 12 man/table_width.Rd | 12 man/to_html.Rd | 20 - man/to_pml.Rd | 20 - man/to_rtf.Rd | 20 - man/to_wml.Rd | 20 - man/unordered_list.Rd | 24 - man/wml_link_images.Rd | 20 - man/xlsx_drawing.Rd | 288 +++++++++++------- man/xlsx_styles.Rd | 287 +++++++++--------- tests/testthat/test-ooxml-fragments.R |only tests/testthat/test-rtf-styles.R |only tests/testthat/test-to_rtf.R | 78 +++++ tests/testthat/test-xlsx-misc.R | 287 ++++++++++++++++++ 134 files changed, 3005 insertions(+), 1659 deletions(-)
Title: Categorical Regression Splines
Description: Regression splines that handle a mix of continuous and categorical (discrete) data often encountered in applied settings. I would like to gratefully acknowledge support from the Natural Sciences and Engineering Research Council of Canada (NSERC, <https://www.nserc-crsng.gc.ca>), the Social Sciences and Humanities Research Council of Canada (SSHRC, <https://www.sshrc-crsh.gc.ca>), and the Shared Hierarchical Academic Research Computing Network (SHARCNET, <https://www.sharcnet.ca>). We would also like to acknowledge the contributions of the GNU GSL authors. In particular, we adapt the GNU GSL B-spline routine gsl_bspline.c adding automated support for quantile knots (in addition to uniform knots), providing missing functionality for derivatives, and for extending the splines beyond their endpoints.
Author: Jeffrey S. Racine [aut, cre],
Zhenghua Nie [aut],
Brian D. Ripley [ctb]
Maintainer: Jeffrey S. Racine <racinej@mcmaster.ca>
Diff between crs versions 0.15-42 dated 2026-05-01 and 0.15-43 dated 2026-05-15
CHANGELOG | 13 +++++++++ DESCRIPTION | 8 ++--- MD5 | 14 +++++----- README.md | 25 ++++++++++++++++++ inst/doc/crs_getting_started.html | 4 +- src/nomad4_src/src/Algos/Mads/SgtelibSearchMethod.cpp | 7 ++--- src/nomad4_src/src/Eval/ProgressiveBarrier.cpp | 4 +- src/snomadr.cpp | 12 +++++--- 8 files changed, 65 insertions(+), 22 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-02-28 0.2.2
2015-07-24 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-01-15 0.11.3
2021-12-20 0.8.1
2021-06-30 0.6.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-11 1.2
2019-09-07 1.1
2012-12-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-11-25 1.4
2024-11-18 1.3
2022-10-21 1.2
2022-09-21 1.1
2022-03-29 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-10-05 0.1
Title: Explainable Ensemble Trees
Description: The Explainable Ensemble Trees 'e2tree' approach has been proposed by Aria et al. (2024) <doi:10.1007/s00180-022-01312-6>. It aims to explain and interpret decision tree ensemble models using a single tree-like structure. 'e2tree' is a new way of explaining an ensemble tree trained through 'randomForest' or 'xgboost' packages.
Author: Massimo Aria [aut, cre, cph] ,
Agostino Gnasso [aut, cph]
Maintainer: Massimo Aria <aria@unina.it>
Diff between e2tree versions 1.0.0 dated 2026-03-13 and 1.2.0 dated 2026-05-15
e2tree-1.0.0/e2tree/R/goi.R |only e2tree-1.0.0/e2tree/man/figures/README-unnamed-chunk-20-3.png |only e2tree-1.0.0/e2tree/man/goi.Rd |only e2tree-1.0.0/e2tree/man/goi_analysis.Rd |only e2tree-1.0.0/e2tree/man/goi_perm.Rd |only e2tree-1.0.0/e2tree/man/plot.goi_perm.Rd |only e2tree-1.2.0/e2tree/DESCRIPTION | 21 e2tree-1.2.0/e2tree/MD5 | 119 + e2tree-1.2.0/e2tree/NAMESPACE | 64 - e2tree-1.2.0/e2tree/NEWS.md | 149 ++ e2tree-1.2.0/e2tree/R/aaa_utils.R | 91 + e2tree-1.2.0/e2tree/R/accessors.R |only e2tree-1.2.0/e2tree/R/adapters.R |only e2tree-1.2.0/e2tree/R/coercion.R |only e2tree-1.2.0/e2tree/R/createDisMatrix.R | 138 +- e2tree-1.2.0/e2tree/R/e2tree.R | 91 + e2tree-1.2.0/e2tree/R/ePredTree.R | 24 e2tree-1.2.0/e2tree/R/eStoppingRules.R | 11 e2tree-1.2.0/e2tree/R/eValidation.R | 584 +++++++-- e2tree-1.2.0/e2tree/R/loi.R |only e2tree-1.2.0/e2tree/R/methods_e2tree.R |only e2tree-1.2.0/e2tree/R/plot_e2tree_click.R | 20 e2tree-1.2.0/e2tree/R/plot_e2tree_vis.R | 23 e2tree-1.2.0/e2tree/R/roc.R | 2 e2tree-1.2.0/e2tree/R/rpart2Tree.R | 94 - e2tree-1.2.0/e2tree/R/vimp.R | 352 ++--- e2tree-1.2.0/e2tree/R/zzz.R | 39 e2tree-1.2.0/e2tree/README.md | 629 ++++++++-- e2tree-1.2.0/e2tree/build |only e2tree-1.2.0/e2tree/inst/doc |only e2tree-1.2.0/e2tree/man/as.party.e2tree.Rd |only e2tree-1.2.0/e2tree/man/as.rpart.Rd |only e2tree-1.2.0/e2tree/man/check_package.Rd | 4 e2tree-1.2.0/e2tree/man/createDisMatrix.Rd | 27 e2tree-1.2.0/e2tree/man/e2_variance.Rd | 4 e2tree-1.2.0/e2tree/man/e2splits.Rd |only e2tree-1.2.0/e2tree/man/ePredTree.Rd | 25 e2tree-1.2.0/e2tree/man/eValidation.Rd | 94 - e2tree-1.2.0/e2tree/man/ensemble_backend.Rd |only e2tree-1.2.0/e2tree/man/extract_terminal_nodes.Rd |only e2tree-1.2.0/e2tree/man/figures/README-unnamed-chunk-11-1.png |only e2tree-1.2.0/e2tree/man/figures/README-unnamed-chunk-12-1.png |only e2tree-1.2.0/e2tree/man/figures/README-unnamed-chunk-13-1.png |only e2tree-1.2.0/e2tree/man/figures/README-unnamed-chunk-17-1.png |binary e2tree-1.2.0/e2tree/man/figures/README-unnamed-chunk-17-2.png |only e2tree-1.2.0/e2tree/man/figures/README-unnamed-chunk-19-1.png |binary e2tree-1.2.0/e2tree/man/figures/README-unnamed-chunk-19-2.png |binary e2tree-1.2.0/e2tree/man/figures/README-unnamed-chunk-20-1.png |binary e2tree-1.2.0/e2tree/man/figures/README-unnamed-chunk-22-1.png |only e2tree-1.2.0/e2tree/man/figures/README-unnamed-chunk-24-1.png |only e2tree-1.2.0/e2tree/man/figures/README-unnamed-chunk-26-1.png |only e2tree-1.2.0/e2tree/man/figures/README-unnamed-chunk-27-1.png |only e2tree-1.2.0/e2tree/man/figures/README-unnamed-chunk-30-1.png |only e2tree-1.2.0/e2tree/man/fitted.e2tree.Rd |only e2tree-1.2.0/e2tree/man/get_ensemble_predictions.Rd |only e2tree-1.2.0/e2tree/man/get_ensemble_type.Rd | 14 e2tree-1.2.0/e2tree/man/loi.Rd |only e2tree-1.2.0/e2tree/man/loi_perm.Rd |only e2tree-1.2.0/e2tree/man/measures.Rd |only e2tree-1.2.0/e2tree/man/nodes.Rd |only e2tree-1.2.0/e2tree/man/plot.e2tree.Rd |only e2tree-1.2.0/e2tree/man/plot_e2tree_click.Rd | 11 e2tree-1.2.0/e2tree/man/plot_e2tree_vis.Rd | 21 e2tree-1.2.0/e2tree/man/predict.e2tree.Rd |only e2tree-1.2.0/e2tree/man/print.e2tree.Rd |only e2tree-1.2.0/e2tree/man/proximity.Rd |only e2tree-1.2.0/e2tree/man/residuals.e2tree.Rd |only e2tree-1.2.0/e2tree/man/roc.Rd | 2 e2tree-1.2.0/e2tree/man/rpart2Tree.Rd | 53 e2tree-1.2.0/e2tree/man/summary.e2tree.Rd |only e2tree-1.2.0/e2tree/man/validate_terminal_nodes.Rd |only e2tree-1.2.0/e2tree/man/vimp.Rd | 44 e2tree-1.2.0/e2tree/src/CoOccurrences.cpp | 55 e2tree-1.2.0/e2tree/src/Makevars | 3 e2tree-1.2.0/e2tree/tests/simulation_tests.R |only e2tree-1.2.0/e2tree/tests/testthat/Rplots.pdf |only e2tree-1.2.0/e2tree/tests/testthat/test-adapters.R |only e2tree-1.2.0/e2tree/tests/testthat/test-multi-backend.R |only e2tree-1.2.0/e2tree/tests/testthat/test-vimp.R | 6 e2tree-1.2.0/e2tree/vignettes |only 80 files changed, 2025 insertions(+), 789 deletions(-)
Title: Decode Coded Variables to Plain Text and the Other Way Around
Description: Main function "decode" is used to decode coded key values to plain
text. Function "code" can be used to code plain text to code if there is a
1:1 relation between the two. The concept relies on 'keyvalue' objects used
for translation. There are several 'keyvalue' objects included in the areas
of geographical regional codes, administrative health care unit codes,
diagnosis codes and more. It is also easy to extend the use by arbitrary
code sets.
Author: Erik Bulow [aut, cre]
Maintainer: Erik Bulow <eriklgb@gmail.com>
Diff between decoder versions 1.2.2 dated 2020-04-22 and 1.2.3 dated 2026-05-15
decoder-1.2.2/decoder/data/datalist |only decoder-1.2.3/decoder/DESCRIPTION | 23 decoder-1.2.3/decoder/MD5 | 263 - decoder-1.2.3/decoder/NAMESPACE | 41 decoder-1.2.3/decoder/NEWS.md | 25 decoder-1.2.3/decoder/R/as.key.R | 44 decoder-1.2.3/decoder/R/as.keyvalue.R | 74 decoder-1.2.3/decoder/R/as.keyvalue.data.frame.R | 54 decoder-1.2.3/decoder/R/as.keyvalue.default.R | 54 decoder-1.2.3/decoder/R/as.keyvalue.keyvalue.R | 4 decoder-1.2.3/decoder/R/as.keyvalue.list.R | 114 decoder-1.2.3/decoder/R/as.value.R | 46 decoder-1.2.3/decoder/R/code.R | 56 decoder-1.2.3/decoder/R/datasets_keyvalue.R | 990 ++--- decoder-1.2.3/decoder/R/decode.R | 257 - decoder-1.2.3/decoder/R/decode.data.frame.R | 128 decoder-1.2.3/decoder/R/decode.default.R | 92 decoder-1.2.3/decoder/R/extra_functions.R | 78 decoder-1.2.3/decoder/R/internal_format_as_key.R | 160 decoder-1.2.3/decoder/R/internals.R | 24 decoder-1.2.3/decoder/R/is.keyvalue.R | 18 decoder-1.2.3/decoder/R/keyvalue_methods.R | 60 decoder-1.2.3/decoder/R/sysdata.rda |binary decoder-1.2.3/decoder/README.md | 50 decoder-1.2.3/decoder/build/vignette.rds |binary decoder-1.2.3/decoder/data/atc.rda |binary decoder-1.2.3/decoder/data/avgm.rda |binary decoder-1.2.3/decoder/data/ben.rda |binary decoder-1.2.3/decoder/data/digr.rda |binary decoder-1.2.3/decoder/data/distrikt.rda |binary decoder-1.2.3/decoder/data/dodca.rda |binary decoder-1.2.3/decoder/data/figo.rda |binary decoder-1.2.3/decoder/data/forsamling.rda |binary decoder-1.2.3/decoder/data/hemort.rda |binary decoder-1.2.3/decoder/data/hemort2.rda |binary decoder-1.2.3/decoder/data/hsn.rda |binary decoder-1.2.3/decoder/data/icd10cm.rda |binary decoder-1.2.3/decoder/data/icd10se.rda |binary decoder-1.2.3/decoder/data/icd7.rda |binary decoder-1.2.3/decoder/data/icd7_grov.rda |binary decoder-1.2.3/decoder/data/icd9.rda |binary decoder-1.2.3/decoder/data/icd9cmd.rda |binary decoder-1.2.3/decoder/data/icd9cmp.rda |binary decoder-1.2.3/decoder/data/icdo.rda |binary decoder-1.2.3/decoder/data/icdo3.rda |binary decoder-1.2.3/decoder/data/icdo3_grov.rda |binary decoder-1.2.3/decoder/data/klinik.rda |binary decoder-1.2.3/decoder/data/kommun.rda |binary decoder-1.2.3/decoder/data/kon.rda |binary decoder-1.2.3/decoder/data/kva.rda |binary decoder-1.2.3/decoder/data/lan.rda |binary decoder-1.2.3/decoder/data/m_rtr.rda |binary decoder-1.2.3/decoder/data/manuell.rda |binary decoder-1.2.3/decoder/data/n_rtr.rda |binary decoder-1.2.3/decoder/data/obd.rda |binary decoder-1.2.3/decoder/data/pad.rda |binary decoder-1.2.3/decoder/data/patologiavdelning.rda |binary decoder-1.2.3/decoder/data/region.rda |binary decoder-1.2.3/decoder/data/sida.rda |binary decoder-1.2.3/decoder/data/sjukhus.rda |binary decoder-1.2.3/decoder/data/sjukhus_inca.rda |binary decoder-1.2.3/decoder/data/sjukhus_par.rda |binary decoder-1.2.3/decoder/data/sjukvardsomrade.rda |binary decoder-1.2.3/decoder/data/snomed.rda |binary decoder-1.2.3/decoder/data/snomed3.rda |binary decoder-1.2.3/decoder/data/status.rda |binary decoder-1.2.3/decoder/data/t_rtr.rda |binary decoder-1.2.3/decoder/data/tnmgrund.rda |binary decoder-1.2.3/decoder/inst/WORDLIST | 424 +- decoder-1.2.3/decoder/inst/doc/decoder.R | 206 - decoder-1.2.3/decoder/inst/doc/decoder.Rmd | 486 +- decoder-1.2.3/decoder/inst/doc/decoder.html | 1726 ++++----- decoder-1.2.3/decoder/inst/doc/sjukhus.R | 70 decoder-1.2.3/decoder/inst/doc/sjukhus.Rmd | 180 decoder-1.2.3/decoder/inst/doc/sjukhus.html | 1882 +++++----- decoder-1.2.3/decoder/man/as.keyvalue.list.Rd | 86 decoder-1.2.3/decoder/man/atc.Rd | 19 decoder-1.2.3/decoder/man/decode.Rd | 323 - decoder-1.2.3/decoder/man/distrikt.Rd | 102 decoder-1.2.3/decoder/man/extra_functions.Rd | 52 decoder-1.2.3/decoder/man/figo.Rd | 98 decoder-1.2.3/decoder/man/forsamling.Rd | 104 decoder-1.2.3/decoder/man/hemort.Rd | 106 decoder-1.2.3/decoder/man/hsn.Rd | 128 decoder-1.2.3/decoder/man/icd10cm.Rd | 19 decoder-1.2.3/decoder/man/icd10se.Rd | 19 decoder-1.2.3/decoder/man/icd7.Rd | 98 decoder-1.2.3/decoder/man/icd7_grov.Rd | 98 decoder-1.2.3/decoder/man/icd9.Rd | 98 decoder-1.2.3/decoder/man/icd9cmd.Rd | 17 decoder-1.2.3/decoder/man/icdo.Rd | 98 decoder-1.2.3/decoder/man/icdo3.Rd | 98 decoder-1.2.3/decoder/man/icdo3_grov.Rd | 101 decoder-1.2.3/decoder/man/key_and_value.Rd | 62 decoder-1.2.3/decoder/man/keyvalue.Rd | 118 decoder-1.2.3/decoder/man/klinik.Rd | 101 decoder-1.2.3/decoder/man/kommun.Rd | 106 decoder-1.2.3/decoder/man/kon.Rd | 98 decoder-1.2.3/decoder/man/kva.Rd | 19 decoder-1.2.3/decoder/man/lan.Rd | 100 decoder-1.2.3/decoder/man/m_rtr.Rd | 98 decoder-1.2.3/decoder/man/n_rtr.Rd | 98 decoder-1.2.3/decoder/man/pad.Rd | 96 decoder-1.2.3/decoder/man/pad0.Rd | 38 decoder-1.2.3/decoder/man/patologiavdelning.Rd | 112 decoder-1.2.3/decoder/man/region.Rd | 96 decoder-1.2.3/decoder/man/rockan.Rd | 16 decoder-1.2.3/decoder/man/sida.Rd | 98 decoder-1.2.3/decoder/man/sjukhus.Rd | 122 decoder-1.2.3/decoder/man/sjukhus_inca.Rd | 96 decoder-1.2.3/decoder/man/sjukhus_par.Rd | 96 decoder-1.2.3/decoder/man/sjukvardsomrade.Rd | 152 decoder-1.2.3/decoder/man/snomed.Rd | 100 decoder-1.2.3/decoder/man/snomed3.Rd | 98 decoder-1.2.3/decoder/man/summary.keyvalue.Rd | 50 decoder-1.2.3/decoder/man/t_rtr.Rd | 98 decoder-1.2.3/decoder/man/tnmgrund.Rd | 98 decoder-1.2.3/decoder/tests/testthat.R | 8 decoder-1.2.3/decoder/tests/testthat/test-as.key.R | 28 decoder-1.2.3/decoder/tests/testthat/test-as.keyvalue.data.frame.R | 26 decoder-1.2.3/decoder/tests/testthat/test-as.keyvalue.default.R | 20 decoder-1.2.3/decoder/tests/testthat/test-as.keyvalue.list.R | 64 decoder-1.2.3/decoder/tests/testthat/test-as.value.R | 20 decoder-1.2.3/decoder/tests/testthat/test-code.R | 24 decoder-1.2.3/decoder/tests/testthat/test-datasets_keyvalue.R | 78 decoder-1.2.3/decoder/tests/testthat/test-decode.R | 77 decoder-1.2.3/decoder/tests/testthat/test-internal_extra_functions_sjukvardsomrade.R | 50 decoder-1.2.3/decoder/tests/testthat/test-internal_format_as_key.R | 38 decoder-1.2.3/decoder/tests/testthat/test-is.keyvalue.R | 14 decoder-1.2.3/decoder/tests/testthat/test-keyvalue_methods.R | 20 decoder-1.2.3/decoder/tests/testthat/test-pad0.R | 16 decoder-1.2.3/decoder/vignettes/decoder.Rmd | 486 +- decoder-1.2.3/decoder/vignettes/sjukhus.Rmd | 180 133 files changed, 6408 insertions(+), 6200 deletions(-)
Title: Multimodal Single-Cell Omics Dimensionality Reduction
Description: Methods to perform Joint graph Regularized Single-Cell Kullback-Leibler Sparse Non-negative Matrix Factorization ('jrSiCKLSNMF', pronounced "junior sickles NMF") on quality controlled single-cell multimodal omics count data. 'jrSiCKLSNMF' specifically deals with dual-assay scRNA-seq and scATAC-seq data. This package contains functions to extract meaningful latent factors that are shared across omics modalities. These factors enable accurate cell-type clustering and facilitate visualizations. Methods for pre-processing, clustering, and mini-batch updates and other adaptations for larger datasets are also included. For further details on the methods used in this package please see Ellis, Roy, and Datta (2023) <doi:10.3389/fgene.2023.1179439>.
Author: Dorothy Ellis [aut, cre] ,
Susmita Datta [ths],
Kenneth Perkins [ctb] ,
Renaud Gaujoux [ctb]
Maintainer: Dorothy Ellis <ddemoreellis@gmail.com>
Diff between jrSiCKLSNMF versions 1.2.3 dated 2025-07-11 and 1.2.4 dated 2026-05-15
DESCRIPTION | 10 +++++----- MD5 | 26 +++++++++++++------------- NAMESPACE | 2 +- NEWS.md | 4 ++-- R/jrSiCKLSNMF.R | 6 +++--- build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 2 +- inst/doc/Getting_Started.html | 18 +++++++++--------- inst/doc/Getting_Started_L2_Norm.html | 18 +++++++++--------- inst/doc/Minibatch_jrSiCKLKSNMF.html | 22 +++++++++++----------- man/DetermineDFromIRLBA.Rd | 2 +- man/RunjrSiCKLSNMF.Rd | 2 +- src/jrSiCKLSNMF.cpp | 2 +- 14 files changed, 57 insertions(+), 57 deletions(-)
Title: Wild Bootstrap Size Diagnostics
Description: Implements the diagnostic "theta" developed in Poetscher and Preinerstorfer (2020) "How Reliable are Bootstrap-based Heteroskedasticity Robust Tests?" <doi:10.48550/arXiv.2005.04089>, which appeared as <doi:10.1017/S0266466622000184> in Econometric Theory , Volume 39 , Issue 4 , August 2023 , pp. 789 - 847. The diagnostic "theta" can be used to detect and weed out bootstrap-based procedures that provably have size equal to one for a given testing problem. The implementation covers a large variety of bootstrap-based procedures, cf. the above mentioned article for details. A function for computing bootstrap p-values is provided.
Author: David Preinerstorfer [aut, cre]
Maintainer: David Preinerstorfer <david.preinerstorfer@wu.ac.at>
Diff between wbsd versions 1.0.0 dated 2020-05-14 and 1.0.1 dated 2026-05-15
DESCRIPTION | 16 +++++++++------- MD5 | 22 +++++++++++----------- NEWS | 6 ++++++ R/auxiliary.functions.R | 2 +- R/boot.pval.R | 2 +- R/theta.R | 2 +- R/zzz.R | 4 ++-- build/partial.rdb |binary inst/CITATION | 26 ++++++++++++-------------- man/wbsd-package.Rd | 3 ++- src/rrev.cpp | 2 +- src/test.statistic.cpp | 2 +- 12 files changed, 47 insertions(+), 40 deletions(-)
Title: Bayesian Seemingly Unrelated Regression Models in
High-Dimensional Settings
Description: Bayesian seemingly unrelated regression with general variable selection and dense/sparse covariance matrix. The sparse seemingly unrelated regression is described in Bottolo et al. (2021) <doi:10.1111/rssc.12490>, the software paper is in Zhao et al. (2021) <doi:10.18637/jss.v100.i11>, and the model with random effects is described in Zhao et al. (2024) <doi:10.1093/jrsssc/qlad102>.
Author: Marco Banterle [aut],
Zhi Zhao [aut, cre],
Leonardo Bottolo [ctb],
Sylvia Richardson [ctb],
Waldir Leoncio [ctb],
Alex Lewin [aut],
Manuela Zucknick [aut]
Maintainer: Zhi Zhao <zhi.zhao@medisin.uio.no>
Diff between BayesSUR versions 2.3-1 dated 2025-11-16 and 2.3-2 dated 2026-05-15
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- NEWS.md | 5 +++++ R/BayesSUR.R | 1 + R/exampleGDSC.R | 2 +- R/plotMCMCdiag.R | 37 +++++++++++++++++++------------------ R/targetGene.R | 2 +- build/vignette.rds |binary configure | 21 ++++++++++++--------- configure.ac | 3 +++ data/exampleGDSC.rda |binary inst/CITATION | 4 ++-- inst/doc/BayesSUR.pdf |binary man/exampleGDSC.Rd | 2 +- man/targetGene.Rd | 2 +- src/drive.cpp | 4 ++-- 16 files changed, 67 insertions(+), 54 deletions(-)
Title: Tour Methods for Multivariate Data Visualisation
Description: Implements geodesic interpolation and basis
generation functions that allow you to create new tour
methods from R.
Author: Hadley Wickham [aut, ctb] ,
Dianne Cook [aut, cre] ,
Nick Spyrison [ctb] ,
Ursula Laa [ctb] ,
H. Sherry Zhang [ctb] ,
Stuart Lee [ctb]
Maintainer: Dianne Cook <dicook@monash.edu>
Diff between tourr versions 1.2.6 dated 2025-07-13 and 1.2.7 dated 2026-05-15
tourr-1.2.6/tourr/inst/df.rda |only tourr-1.2.6/tourr/inst/doc/tourr.R |only tourr-1.2.6/tourr/inst/doc/tourr.Rmd |only tourr-1.2.6/tourr/inst/doc/tourr.html |only tourr-1.2.6/tourr/inst/errors_w_jso.txt |only tourr-1.2.6/tourr/inst/vc.rda |only tourr-1.2.6/tourr/vignettes/tourr.Rmd |only tourr-1.2.7/tourr/DESCRIPTION | 15 +-- tourr-1.2.7/tourr/MD5 | 66 ++++++++++----- tourr-1.2.7/tourr/NEWS.md | 9 ++ tourr-1.2.7/tourr/R/history.r | 24 ++++- tourr-1.2.7/tourr/R/interpolate.r | 15 ++- tourr-1.2.7/tourr/R/path-index.r | 6 - tourr-1.2.7/tourr/R/tour-little.r | 11 +- tourr-1.2.7/tourr/R/tour.r | 3 tourr-1.2.7/tourr/build/vignette.rds |binary tourr-1.2.7/tourr/inst/doc/edges.R | 47 +++++------ tourr-1.2.7/tourr/inst/doc/edges.Rmd | 19 ++-- tourr-1.2.7/tourr/inst/doc/edges.html | 72 ++++++----------- tourr-1.2.7/tourr/inst/doc/intro.R |only tourr-1.2.7/tourr/inst/doc/intro.Rmd |only tourr-1.2.7/tourr/inst/doc/intro.html |only tourr-1.2.7/tourr/inst/doc/labelling-observations.R |only tourr-1.2.7/tourr/inst/doc/labelling-observations.Rmd |only tourr-1.2.7/tourr/inst/doc/labelling-observations.html |only tourr-1.2.7/tourr/inst/doc/tour-types.R |only tourr-1.2.7/tourr/inst/doc/tour-types.Rmd |only tourr-1.2.7/tourr/inst/doc/tour-types.html |only tourr-1.2.7/tourr/man/bases_little.Rd | 5 - tourr-1.2.7/tourr/man/figures/logo.png |binary tourr-1.2.7/tourr/man/figures/oldlogo.png |only tourr-1.2.7/tourr/man/little_tour.Rd | 4 tourr-1.2.7/tourr/man/tourr-package.Rd | 2 tourr-1.2.7/tourr/tests |only tourr-1.2.7/tourr/vignettes/edges.Rmd | 19 ++-- tourr-1.2.7/tourr/vignettes/figures |only tourr-1.2.7/tourr/vignettes/intro.Rmd |only tourr-1.2.7/tourr/vignettes/labelling-observations.Rmd |only tourr-1.2.7/tourr/vignettes/tour-types.Rmd |only 39 files changed, 185 insertions(+), 132 deletions(-)
Title: Serialize R Objects to JSON
Description: Converts R objects to and from JavaScript Object Notation
(JSON). The package provides a stable interface for reading JSON from
strings, files, and connections, and for serializing common R objects,
including vectors, lists, data frames, arrays, environments, and S4
objects. It also exposes parser handlers, callbacks, and S4 methods for
applications that need customized JSON processing while preserving
established RJSONIO behavior.
Author: Yaoxiang Li [aut, ctb, cre] ,
CRAN Team [aut],
Duncan Temple Lang [aut] ,
Jonathan Wallace [aut]
Maintainer: Yaoxiang Li <liyaoxiang@outlook.com>
Diff between RJSONIO versions 2.0.0 dated 2025-04-05 and 2.0.5 dated 2026-05-15
DESCRIPTION | 39 +++++++++++++++++++++------------------ MD5 | 52 ++++++++++++++++++++++++++++++++++++++++++++++++---- NEWS.md |only R/json.R | 20 ++++++++++++++++++++ README.md |only build |only inst/doc |only man/figures |only src/ConvertUTF.c | 6 ++++++ src/fast_to_json.c |only src/init.c | 2 ++ tests/testthat |only tests/testthat.R |only vignettes |only 14 files changed, 97 insertions(+), 22 deletions(-)
Title: Tools for Educational and Psychological Measurement
Description: 'Provides an interactive toolkit for educational and psychological measurement implemented using the 'shiny' framework. The package supports content validity analysis, dimensionality assessment, and Classical Test Theory using the 'CTT' package (Willse, 2018) <doi:10.32614/CRAN.package.CTT>. Item Response Theory (IRT) analyses are conducted via 'mirt' (Chalmers, 2012) <doi:10.18637/jss.v048.i06>. Exploratory Factor Analysis is performed using 'psych' (Revelle, 2025), while Confirmatory Factor Analysis (CFA) and Structural Equation Modeling (SEM) are based on the 'lavaan' framework (Rosseel, 2012) <doi:10.18637/jss.v048.i02>. The CFA/SEM module features interactive model specification, automatic model comparison, modification indices, comprehensive fit diagnostics, path diagram visualization, and HTML report generation. The application allows users to upload data, evaluate statistical models, visualize results, and export outputs through an intuitive graphical interfac [...truncated...]
Author: Hasan Djidu [aut, cre] ,
Heri Retnawati [ctb]
Maintainer: Hasan Djidu <hasandjidu@gmail.com>
Diff between measureR versions 0.0.2 dated 2026-02-13 and 0.0.3 dated 2026-05-15
DESCRIPTION | 30 + MD5 | 30 - NEWS.md | 22 + build/vignette.rds |binary inst/app/app.R | 14 inst/app/cfa_report.Rmd |only inst/app/cfa_ui.R | 225 ++++++++----- inst/app/contentval_ui.R | 30 + inst/app/ctt_ui.R | 53 ++- inst/app/homepage_ui.R | 28 + inst/app/lta_ui.R | 19 + inst/app/rsconnect |only inst/app/serverCFA.R | 737 +++++++++++++++++++++++++++++++++++--------- inst/app/serverCTT.R | 56 +++ inst/app/serverContentval.R | 47 ++ inst/app/serverLTA.R | 159 +++++++++ man/measureR-package.Rd | 13 17 files changed, 1179 insertions(+), 284 deletions(-)
Title: Diagnostic Tool by Multiple Imputation for Regression
Discontinuity Designs
Description: Estimates average treatment effects at the cutoff based on sharp
regression discontinuity designs (RDD) and multiple imputation regression
discontinuity designs (MIRDD). It provides diagnostic tools for RDD by
comparing results with those from MIRDD, as proposed in Takahashi (2023)
<doi:10.1080/03610918.2021.1960374>. The package includes datasets from
Takahashi (2023) and Takahashi (2026) <doi:10.1016/j.softx.2026.102707>.
Author: Masayoshi Takahashi [aut, cre]
Maintainer: Masayoshi Takahashi <mtakahashi615@g.chuo-u.ac.jp>
Diff between MIRDD versions 0.2.2 dated 2026-04-21 and 0.2.3 dated 2026-05-15
DESCRIPTION | 24 ++++++------ MD5 | 17 ++++----- R/MIRDD-package.R | 7 +-- R/MIRDD.R | 75 +++++++++++++++++----------------------- R/data.R | 6 +-- inst |only man/LudwigMiller2007Modified.Rd | 4 +- man/MIRDD-package.Rd | 9 +--- man/MIdiagRDD.Rd | 2 + man/lee2008.Rd | 2 - 10 files changed, 67 insertions(+), 79 deletions(-)
Title: Headers and Static Libraries for 'HDF5'
Description: Provides a self-contained, static build of the 'HDF5'
(Hierarchical Data Format 5) 'C' library (release 2.1.1) for R
package developers. Designed for use in the 'LinkingTo' field,
it enables zero-dependency integration by building the library
entirely from source during installation. Additionally, it compiles
and internally links a comprehensive suite of advanced compression
filters and their 'HDF5' plugins (Zstd, LZ4, Blosc/Blosc2, Snappy,
ZFP, Bzip2, LZF, Bitshuffle, szip, and gzip). These plugins are
integrated out-of-the-box, allowing downstream packages to utilize
high-performance compression directly through the standard 'HDF5'
API while keeping the underlying third-party headers fully
encapsulated. 'HDF5' is developed by The HDF Group
<https://www.hdfgroup.org/>.
Author: Daniel P. Smith [aut, cre] ,
Alkek Center for Metagenomics and Microbiome Research [cph, fnd],
The HDF Group [ctb, cph] ,
The Board of Trustees of the University of Illinois [cph] ,
Jean-loup Gailly [ctb, cph] ,
Mark Adler [ctb, cph] ,
Kiyoshi Masui [...truncated...]
Maintainer: Daniel P. Smith <dansmith01@gmail.com>
Diff between hdf5lib versions 2.1.1.0 dated 2026-04-02 and 2.1.1.1 dated 2026-05-15
hdf5lib-2.1.1.0/hdf5lib/src/hdf5-2.1.0.tar.gz |only hdf5lib-2.1.1.1/hdf5lib/DESCRIPTION | 6 +-- hdf5lib-2.1.1.1/hdf5lib/MD5 | 14 ++++--- hdf5lib-2.1.1.1/hdf5lib/NEWS.md | 7 +++ hdf5lib-2.1.1.1/hdf5lib/README.md | 18 ++++++++-- hdf5lib-2.1.1.1/hdf5lib/configure | 11 +++--- hdf5lib-2.1.1.1/hdf5lib/src/hdf5-2.1.1.tar.gz |binary hdf5lib-2.1.1.1/hdf5lib/src/patches/hdf5-2.1.1/11-strncpy_nulterm.patch |only hdf5lib-2.1.1.1/hdf5lib/src/patches/hdf5-2.1.1/12-truncation-to-memcpy.patch |only hdf5lib-2.1.1.1/hdf5lib/src/patches/hdf5-2.1.1/13-const-discarded-qualifiers.patch |only 10 files changed, 40 insertions(+), 16 deletions(-)
Title: Quantifying Similarity of Datasets and Multivariate Two- And
k-Sample Testing
Description: A collection of methods for quantifying the similarity of two or more datasets, many of which can be used for two- or k-sample testing. It provides newly implemented methods as well as wrapper functions for existing methods that enable calling many different methods in a unified framework. The methods were selected from the review and comparison of Stolte et al. (2024) <doi:10.1214/24-SS149>. An empirical comparison of the methods was performed in Stolte et al. (2026) <doi:10.48550/arXiv.2604.11458> for categorical data and in Stolte et al. (2026) <doi:10.48550/arXiv.2604.12327> for numeric data.
Author: Marieke Stolte [aut, cre, cph] ,
Luca Sauer [aut] ,
David Alvarez-Melis [ctb] ,
Nabarun Deb [ctb] , <https://github.com/NabarunD/MultiDistFree.git>),
Bodhisattva Sen [ctb] , <https://github.com/NabarunD/MultiDistFree.git>)
Maintainer: Marieke Stolte <marieke.stolte@ibe.med.uni-muenchen.de>
Diff between DataSimilarity versions 0.3.0 dated 2026-02-27 and 0.4.0 dated 2026-05-15
ChangeLog | 33 DESCRIPTION | 21 MD5 | 281 NAMESPACE | 4 R/BF.R | 3 R/BG.R | 14 R/BG2.R | 17 R/BMG.R | 8 R/BQS.R | 9 R/BallDivergence.R | 27 R/C2ST.R | 25 R/CMDistance.R | 36 R/DS.R | 6 R/DiProPerm.R | 8 R/FStest.R | 21 R/GGRL.R | 19 R/GPK.R | 10 R/HMN.R | 8 R/Jeffreys.R | 8 R/KMD.R | 18 R/LHZ.R | 8 R/MMCM.R | 19 R/MMD.R | 8 R/MW.R | 23 R/NKT.R | 14 R/OTDD.R | 9 R/Petrie.R | 22 R/RISE.R |only R/RItest.R | 24 R/Rosenbaum.R | 10 R/SC.R | 19 R/SH.R | 10 R/Wasserstein.R | 10 R/ZC.R | 2 R/cramerWrapper.R | 8 R/energyWrapper.R | 12 R/engineerMetric.R | 9 R/gTests.R | 4 R/helper_functions_DS.R | 2 R/helper_functions_DiProPerm.R | 10 R/helper_functions_crossmatch_based_methods.R | 41 R/helper_functions_density_based_methods.R | 10 R/helper_functions_gTests.R | 28 build/partial.rdb |binary build/vignette.rds |binary data/method.table.RData |binary inst/doc/Details.R | 343 inst/doc/Details.Rnw | 2003 ++--- inst/doc/Details.pdf |binary inst/doc/GettingStarted.R | 282 inst/doc/GettingStarted.Rnw | 652 + inst/doc/GettingStarted.pdf |binary man/BF.Rd | 14 man/BG.Rd | 14 man/BG2.Rd | 7 man/BMG.Rd | 7 man/BQS.Rd | 6 man/Bahr.Rd | 6 man/BallDivergence.Rd | 6 man/C2ST.Rd | 14 man/CCS.Rd | 11 man/CCS_cat.Rd | 14 man/CF.Rd | 10 man/CF_cat.Rd | 14 man/CMDistance.Rd | 8 man/Cramer.Rd | 3 man/DISCOB.Rd | 18 man/DISCOF.Rd | 20 man/DS.Rd | 5 man/DataSimilarity-package.Rd | 4 man/DataSimilarity.Rd | 29 man/DiProPerm.Rd | 8 man/Energy.Rd | 10 man/FR.Rd | 10 man/FR_cat.Rd | 14 man/FStest.Rd | 14 man/GGRL.Rd | 12 man/GPK.Rd | 7 man/HMN.Rd | 10 man/Jeffreys.Rd | 11 man/KMD.Rd | 7 man/LHZ.Rd | 4 man/MMCM.Rd | 20 man/MMD.Rd | 4 man/MST.Rd | 4 man/MW.Rd | 5 man/NKT.Rd | 8 man/OTDD.Rd | 7 man/Petrie.Rd | 20 man/RISE.Rd |only man/RItest.Rd | 14 man/Rosenbaum.Rd | 7 man/SC.Rd | 12 man/SH.Rd | 7 man/Wasserstein.Rd | 8 man/YMRZL.Rd | 7 man/ZC.Rd | 16 man/ZC_cat.Rd | 8 man/dipro.fun.Rd | 1 man/engineerMetric.Rd | 4 man/findSimilarityMethod.Rd | 7 man/gTests.Rd | 12 man/gTestsMulti.Rd | 6 man/gTests_cat.Rd | 12 man/kerTests.Rd | 2 man/knn.Rd | 2 man/method.table.Rd | 7 tests/testthat/test-BG.R | 15 tests/testthat/test-BG2.R | 14 tests/testthat/test-BMG.R | 12 tests/testthat/test-BQS.R | 14 tests/testthat/test-BallDivergence.R | 14 tests/testthat/test-C2ST.R | 14 tests/testthat/test-CMDistance.R | 18 tests/testthat/test-Cramer_Bahr_BF.R | 12 tests/testthat/test-DS.R | 14 tests/testthat/test-DiProPerm.R | 14 tests/testthat/test-Energy_DISCO.R | 26 tests/testthat/test-FR_CF_CCS_ZC.R | 56 tests/testthat/test-FStest_RItest.R | 88 tests/testthat/test-GPK.R | 14 tests/testthat/test-HMN.R | 14 tests/testthat/test-Jeffreys.R | 12 tests/testthat/test-KMD.R | 14 tests/testthat/test-LHZ.R | 14 tests/testthat/test-MMCM.R | 14 tests/testthat/test-MMD.R | 14 tests/testthat/test-MW.R | 14 tests/testthat/test-NKT_GGRL.R | 51 tests/testthat/test-OTDD.R | 16 tests/testthat/test-Petrie.R | 12 tests/testthat/test-RISE.R |only tests/testthat/test-Rosenbaum.R | 12 tests/testthat/test-SC.R | 19 tests/testthat/test-SH.R | 14 tests/testthat/test-Wasserstein.R | 15 tests/testthat/test-YMRZL.R | 14 tests/testthat/test-engineerMetric.R | 14 vignettes/Details.Rnw | 2003 ++--- vignettes/GettingStarted.Rnw | 652 + vignettes/refs.bib | 9734 +++++++++++++------------- vignettes/res.Petrie.bin.10.pdf |only vignettes/res.Petrie.bin.pdf |only vignettes/res.Petrie.mult.10.pdf |only vignettes/res.Petrie.mult.pdf |only 145 files changed, 9791 insertions(+), 7861 deletions(-)
More information about DataSimilarity at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-15 0.3.1
2026-04-13 0.3.0
2025-03-25 0.2.2
2025-03-20 0.2.1
2025-02-08 0.2.0
2024-08-24 0.1.8
2024-05-31 0.1.7
2023-12-16 0.1.6
2023-07-11 0.1.5
2023-07-09 0.1.4
2023-01-23 0.1.3
2022-12-17 0.1.2
2022-08-06 0.1.1
2022-07-17 0.1.0
2021-11-22 0.0.4
2021-09-26 0.0.3
2021-08-09 0.0.2
2021-08-04 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-06-23 1.0.3
2025-06-20 1.0.2
2025-06-18 1.0.1
2025-06-17 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-22 0.2.2
2025-09-30 0.2.1
2025-08-27 0.2.0
2024-09-04 0.1.4
2024-07-06 0.1.3
2024-06-27 0.1.2
2023-08-17 0.1.1
2023-07-06 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-06 0.4.9
2024-07-03 0.4.8
2024-02-27 0.4.7
Title: Utilities from 'Seminar fuer Statistik' ETH Zurich
Description: Useful utilities ['goodies'] from Seminar fuer Statistik ETH Zurich,
some of which were ported from S-plus in the 1990s.
For graphics, have pretty (Log-scale) axes eaxis(), an enhanced Tukey-Anscombe
plot, combining histogram and boxplot, 2d-residual plots, a 'tachoPlot()',
pretty arrows, etc.
For robustness, have a robust F test and robust range().
For system support, notably on Linux, provides 'Sys.*()' functions with
more access to system and CPU information.
Finally, miscellaneous utilities such as simple efficient prime numbers,
integer codes, Duplicated(), toLatex.numeric() and is.whole().
Author: Martin Maechler [aut, cre] ,
Werner Stahel [ctb] , f.robftest, last,
p.scales, p.dnorm),
Andreas Ruckstuhl [ctb] , p.profileTraces,
p.res.2x),
Christian Keller [ctb] , p.tachoPlot),
Kjetil Halvorsen [ctb] , ecdf.ksCI),
Alain Hauser [ctb] , is.whole,
[...truncated...]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between sfsmisc versions 1.1-23 dated 2025-11-21 and 1.1-24 dated 2026-05-15
DESCRIPTION | 12 ++++++------ MD5 | 17 +++++++++-------- NAMESPACE | 1 + R/misc-goodies.R | 23 +++++++++++++++++++++-- R/sessionInfo-ext.R | 1 + build/partial.rdb |binary inst/NEWS.Rd | 20 ++++++++++++++++++++ man/compact01.Rd |only man/pkgDesc.Rd | 2 +- man/unix/Sys.ps.Rd | 5 +++-- 10 files changed, 62 insertions(+), 19 deletions(-)
Title: Continuous Norming
Description: A comprehensive toolkit for generating continuous test norms in
psychometrics and biometrics, and analyzing model fit. The package offers
both distribution-free modeling using Taylor polynomials and parametric
modeling using the beta-binomial and the 'Sinh-Arcsinh' distribution.
Originally developed for achievement tests, it is applicable to a wide
range of mental, physical, or other test scores dependent on continuous or
discrete explanatory variables. The package provides several advantages:
It minimizes deviations from representativeness in subsamples, interpolates
between discrete levels of explanatory variables, and significantly reduces
the required sample size compared to conventional norming per age group.
cNORM enables graphical and analytical evaluation of model fit,
accommodates a wide range of scales including those with negative and
descending values, and even supports conventional norming. It generates
norm tables including confidence intervals. It also includes methods f [...truncated...]
Author: Alexandra Lenhard [aut] ,
Wolfgang Lenhard [cre, aut] ,
Sebastian Gary [aut],
WPS Publisher [fnd]
Maintainer: Wolfgang Lenhard <wolfgang.lenhard@uni-wuerzburg.de>
Diff between cNORM versions 3.5.3 dated 2026-05-01 and 3.5.4 dated 2026-05-15
cNORM-3.5.3/cNORM/inst/shiny/app1/www/informationFunction.png |only cNORM-3.5.3/cNORM/inst/shiny/app1/www/plotNorm.png |only cNORM-3.5.3/cNORM/man/check_monotonicity.Rd |only cNORM-3.5.4/cNORM/DESCRIPTION | 8 cNORM-3.5.4/cNORM/MD5 | 135 - cNORM-3.5.4/cNORM/NAMESPACE | 4 cNORM-3.5.4/cNORM/NEWS.md | 27 cNORM-3.5.4/cNORM/R/betaBinomial.R | 114 - cNORM-3.5.4/cNORM/R/cNORM.R | 53 cNORM-3.5.4/cNORM/R/data.R | 2 cNORM-3.5.4/cNORM/R/modelling.R | 141 - cNORM-3.5.4/cNORM/R/plot.R | 149 - cNORM-3.5.4/cNORM/R/preparation.R | 242 +- cNORM-3.5.4/cNORM/R/shash.R | 2 cNORM-3.5.4/cNORM/README.md | 11 cNORM-3.5.4/cNORM/build/partial.rdb |binary cNORM-3.5.4/cNORM/build/vignette.rds |binary cNORM-3.5.4/cNORM/inst/doc/BetaBinomial.html | 15 cNORM-3.5.4/cNORM/inst/doc/WeightedRegression.html | 12 cNORM-3.5.4/cNORM/inst/doc/cNORM-Demo.html | 124 - cNORM-3.5.4/cNORM/inst/doc/sinh.html | 18 cNORM-3.5.4/cNORM/inst/shiny/app1/rsconnect/shinyapps.io/cnorm/cNORM.dcf | 2 cNORM-3.5.4/cNORM/inst/shiny/app1/server.R | 1064 ++-------- cNORM-3.5.4/cNORM/inst/shiny/app1/ui.R | 456 +--- cNORM-3.5.4/cNORM/inst/shiny/app1/www/introduction.html | 116 - cNORM-3.5.4/cNORM/inst/shiny/app2/rsconnect/shinyapps.io/cnorm/cNORM-Parametric.dcf | 2 cNORM-3.5.4/cNORM/inst/shiny/app2/server.R | 118 - cNORM-3.5.4/cNORM/inst/shiny/app2/ui.R | 129 - cNORM-3.5.4/cNORM/man/bestModel.Rd | 194 - cNORM-3.5.4/cNORM/man/cNORM.GUI2.Rd | 6 cNORM-3.5.4/cNORM/man/cNORM.Rd | 6 cNORM-3.5.4/cNORM/man/checkConsistency.Rd | 190 - cNORM-3.5.4/cNORM/man/cnorm.betabinomial2.Rd | 38 cNORM-3.5.4/cNORM/man/cnorm.cv.Rd | 222 +- cNORM-3.5.4/cNORM/man/compare.Rd | 24 cNORM-3.5.4/cNORM/man/computePowers.Rd | 8 cNORM-3.5.4/cNORM/man/derivationTable.Rd | 18 cNORM-3.5.4/cNORM/man/derive.Rd | 82 cNORM-3.5.4/cNORM/man/elfe.Rd | 2 cNORM-3.5.4/cNORM/man/getNormCurve.Rd | 18 cNORM-3.5.4/cNORM/man/modelSummary.Rd | 64 cNORM-3.5.4/cNORM/man/normTable.Rd | 18 cNORM-3.5.4/cNORM/man/plot.cnorm.Rd | 24 cNORM-3.5.4/cNORM/man/plot.cnormBetaBinomial.Rd | 42 cNORM-3.5.4/cNORM/man/plot.cnormBetaBinomial2.Rd | 24 cNORM-3.5.4/cNORM/man/plotDensity.Rd | 24 cNORM-3.5.4/cNORM/man/plotDerivative.Rd | 24 cNORM-3.5.4/cNORM/man/plotNorm.Rd | 36 cNORM-3.5.4/cNORM/man/plotNormCurves.Rd | 28 cNORM-3.5.4/cNORM/man/plotPercentileSeries.Rd | 24 cNORM-3.5.4/cNORM/man/plotPercentiles.Rd | 24 cNORM-3.5.4/cNORM/man/plotRaw.Rd | 24 cNORM-3.5.4/cNORM/man/plotSubset.Rd | 24 cNORM-3.5.4/cNORM/man/predict.cnormBetaBinomial.Rd | 18 cNORM-3.5.4/cNORM/man/predict.cnormBetaBinomial2.Rd | 18 cNORM-3.5.4/cNORM/man/predict.cnormShash.Rd | 18 cNORM-3.5.4/cNORM/man/predictNorm.Rd | 18 cNORM-3.5.4/cNORM/man/predictRaw.Rd | 18 cNORM-3.5.4/cNORM/man/prepareData.Rd | 8 cNORM-3.5.4/cNORM/man/print.cnorm.Rd | 68 cNORM-3.5.4/cNORM/man/printSubset.Rd | 80 cNORM-3.5.4/cNORM/man/rangeCheck.Rd | 116 - cNORM-3.5.4/cNORM/man/rankByGroup.Rd | 8 cNORM-3.5.4/cNORM/man/rankBySlidingWindow.Rd | 10 cNORM-3.5.4/cNORM/man/rawTable.Rd | 18 cNORM-3.5.4/cNORM/man/regressionFunction.Rd | 86 cNORM-3.5.4/cNORM/man/subsample_lm.Rd | 1 cNORM-3.5.4/cNORM/man/summary.cnorm.Rd | 64 cNORM-3.5.4/cNORM/man/taylorSwift.Rd | 5 cNORM-3.5.4/cNORM/tests/testthat/test.modelling.R | 246 +- 70 files changed, 2237 insertions(+), 2695 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-01-17 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-29 1.4.0
2026-03-31 1.3.0
2026-01-27 1.2.1
2026-01-21 1.2.0
2025-09-29 1.1.0
2025-07-22 1.0.2
2025-07-08 1.0.1
2025-04-01 1.0.0
2024-12-12 0.11.2
2024-12-09 0.11.1
2024-09-07 0.10.5
2024-06-19 0.9.2
2024-04-08 0.8.1
2024-02-26 0.7.1
2024-01-19 0.6.2
2024-01-11 0.6.1
2023-11-24 0.5.3
2023-11-22 0.5.2
2023-09-14 0.4.6
2023-08-15 0.4.5
2023-07-01 0.4.4
2023-06-23 0.4.2
2023-04-20 0.3.1
2023-02-24 0.2.5
2023-02-09 0.2.4
2022-12-08 0.2.3
2022-12-03 0.2.2
2022-11-30 0.2.1
2022-11-03 0.1.3
2022-09-22 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-30 0.1.1
2025-07-28 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-30 1.0.2
2026-02-02 0.10.2
2026-01-20 0.10.1
2025-09-11 0.9.1
2025-07-08 0.8.3
2025-06-10 0.8.0
2024-12-09 0.7.7
2024-09-06 0.7.6
2024-06-24 0.7.5
2024-04-03 0.7.4
2024-03-08 0.7.2
2024-03-01 0.7.1
2024-01-25 0.6.1
2023-04-18 0.5
2022-10-27 0.4
2022-03-21 0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-29 0.1.1
2025-09-16 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-28 1.2.0
2025-09-11 1.1.0
2024-06-04 1.0.0
2023-10-12 0.10.0
2023-03-08 0.9.1
2022-11-01 0.9.0
2022-06-08 0.8.0
2022-03-18 0.7.0
2021-11-04 0.6.0
2020-08-27 0.5.0
2020-06-16 0.4.1
2020-06-09 0.4.0
2020-01-24 0.3.0
Title: Creates Statistical Reports
Description: Contains functions to create regulatory-style statistical reports.
Originally designed to create tables, listings, and figures for the
pharmaceutical, biotechnology, and medical device industries, these
reports are generalized enough that they could be used in any industry.
Generates text, rich-text, PDF, HTML, and Microsoft Word file formats.
The package specializes
in printing wide and long tables with automatic page wrapping and splitting.
Reports can be produced with a minimum of function calls, and without
relying on other table packages. The package supports titles, footnotes,
page header, page footers, spanning headers, page by variables,
and automatic page numbering.
Author: David Bosak [aut, cre],
Bill Huang [aut],
Kevin Kramer [ctb],
Duong Tran [ctb],
Raphael Huang [ctb],
Archytas Clinical Solutions [cph]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between reporter versions 1.4.6 dated 2026-02-07 and 1.4.7 dated 2026-05-15
reporter-1.4.6/reporter/inst/extdata/AE.csv |only reporter-1.4.6/reporter/inst/extdata/DA.csv |only reporter-1.4.6/reporter/inst/extdata/DM.csv |only reporter-1.4.6/reporter/inst/extdata/DS.csv |only reporter-1.4.6/reporter/inst/extdata/EX.csv |only reporter-1.4.6/reporter/inst/extdata/IE.csv |only reporter-1.4.6/reporter/inst/extdata/SV.csv |only reporter-1.4.6/reporter/inst/extdata/VS.csv |only reporter-1.4.6/reporter/inst/extdata/adpsga.sas7bdat |only reporter-1.4.6/reporter/inst/extdata/adsl.sas7bdat |only reporter-1.4.6/reporter/tests/testthat/data/ADLB.csv |only reporter-1.4.6/reporter/tests/testthat/docx/test20.jpg |only reporter-1.4.6/reporter/tests/testthat/html/test20.jpg |only reporter-1.4.6/reporter/tests/testthat/pdf2/test52.jpg |only reporter-1.4.6/reporter/tests/testthat/rtf2/test51.jpg |only reporter-1.4.7/reporter/DESCRIPTION | 6 reporter-1.4.7/reporter/MD5 | 206 +-- reporter-1.4.7/reporter/NEWS.md | 9 reporter-1.4.7/reporter/R/create_table_docx.R | 140 ++ reporter-1.4.7/reporter/R/create_table_html.R | 111 +- reporter-1.4.7/reporter/R/create_table_pdf.R | 143 ++ reporter-1.4.7/reporter/R/create_table_rtf.R | 118 +- reporter-1.4.7/reporter/R/create_table_text.R | 96 + reporter-1.4.7/reporter/R/page_template_docx.R | 163 ++- reporter-1.4.7/reporter/R/page_template_html.R | 2 reporter-1.4.7/reporter/R/page_template_pdf.R | 3 reporter-1.4.7/reporter/R/sizing_functions.R | 220 +++- reporter-1.4.7/reporter/R/table_spec.r | 57 + reporter-1.4.7/reporter/R/utilities.R | 253 ++++ reporter-1.4.7/reporter/R/write_pdf.R | 15 reporter-1.4.7/reporter/R/write_report_docx.R | 70 + reporter-1.4.7/reporter/R/write_report_html.R | 37 reporter-1.4.7/reporter/R/write_report_pdf2.R | 5 reporter-1.4.7/reporter/R/write_report_rtf2.R | 5 reporter-1.4.7/reporter/R/write_report_text.R | 68 + reporter-1.4.7/reporter/build/vignette.rds |binary reporter-1.4.7/reporter/inst/doc/reporter-break.html | 6 reporter-1.4.7/reporter/inst/doc/reporter-faq.Rmd | 2 reporter-1.4.7/reporter/inst/doc/reporter-figure.html | 2 reporter-1.4.7/reporter/inst/doc/reporter-fonts.html | 2 reporter-1.4.7/reporter/inst/doc/reporter-grouping.R |only reporter-1.4.7/reporter/inst/doc/reporter-grouping.Rmd |only reporter-1.4.7/reporter/inst/doc/reporter-grouping.html |only reporter-1.4.7/reporter/inst/doc/reporter-hfimage.html | 2 reporter-1.4.7/reporter/inst/doc/reporter-listing.html | 6 reporter-1.4.7/reporter/inst/doc/reporter-pageby.html | 6 reporter-1.4.7/reporter/inst/doc/reporter-rtf.html | 2 reporter-1.4.7/reporter/inst/doc/reporter-spanning.html | 2 reporter-1.4.7/reporter/inst/doc/reporter-stub.html | 2 reporter-1.4.7/reporter/inst/doc/reporter-styles.html | 22 reporter-1.4.7/reporter/inst/doc/reporter-super.html | 4 reporter-1.4.7/reporter/inst/doc/reporter-table.html | 2 reporter-1.4.7/reporter/inst/doc/reporter-text.html | 2 reporter-1.4.7/reporter/inst/doc/reporter-title_header.html | 2 reporter-1.4.7/reporter/inst/doc/reporter-wrap.html | 4 reporter-1.4.7/reporter/inst/doc/reporter.html | 2 reporter-1.4.7/reporter/man/define.Rd | 14 reporter-1.4.7/reporter/man/images/ImageHeader.png |binary reporter-1.4.7/reporter/man/images/e14a.png |binary reporter-1.4.7/reporter/man/images/e14b.png |binary reporter-1.4.7/reporter/man/images/e14c.png |binary reporter-1.4.7/reporter/man/images/e1a.png |binary reporter-1.4.7/reporter/man/images/e1b.png |binary reporter-1.4.7/reporter/man/images/e1c.png |binary reporter-1.4.7/reporter/man/images/e2.png |binary reporter-1.4.7/reporter/man/images/e3.png |binary reporter-1.4.7/reporter/man/images/e4.png |binary reporter-1.4.7/reporter/man/images/e5.png |binary reporter-1.4.7/reporter/man/images/e6a.png |binary reporter-1.4.7/reporter/man/images/e6b.png |binary reporter-1.4.7/reporter/man/images/e7a.png |binary reporter-1.4.7/reporter/man/images/e7b.png |binary reporter-1.4.7/reporter/man/images/e7c.png |binary reporter-1.4.7/reporter/man/images/e8.png |binary reporter-1.4.7/reporter/man/images/example12a.png |binary reporter-1.4.7/reporter/man/images/example12b.png |binary reporter-1.4.7/reporter/man/images/example12c.png |binary reporter-1.4.7/reporter/man/images/example12d.png |binary reporter-1.4.7/reporter/man/images/example12e.png |binary reporter-1.4.7/reporter/man/images/example12f.png |binary reporter-1.4.7/reporter/man/images/example12g.png |binary reporter-1.4.7/reporter/man/images/example12h.png |binary reporter-1.4.7/reporter/man/images/example12i.png |binary reporter-1.4.7/reporter/man/images/example12j.png |binary reporter-1.4.7/reporter/man/images/example12k.png |binary reporter-1.4.7/reporter/man/images/example16a.png |only reporter-1.4.7/reporter/man/images/example16b_p1.png |only reporter-1.4.7/reporter/man/images/example16b_p2.png |only reporter-1.4.7/reporter/man/images/example16b_p3.png |only reporter-1.4.7/reporter/man/images/example16c_p1.png |only reporter-1.4.7/reporter/man/images/example16c_p2.png |only reporter-1.4.7/reporter/man/images/example16c_p3.png |only reporter-1.4.7/reporter/man/images/example16d_p1.png |only reporter-1.4.7/reporter/man/images/example16d_p2.png |only reporter-1.4.7/reporter/man/images/example16d_p3.png |only reporter-1.4.7/reporter/man/images/fonts.png |binary reporter-1.4.7/reporter/man/images/plot.png |binary reporter-1.4.7/reporter/man/images/reporter1.png |binary reporter-1.4.7/reporter/man/images/reporter_blue.png |binary reporter-1.4.7/reporter/man/images/reporter_new.png |binary reporter-1.4.7/reporter/man/images/rtf.png |binary reporter-1.4.7/reporter/man/images/super.png |binary reporter-1.4.7/reporter/man/images/supertable.png |binary reporter-1.4.7/reporter/man/images/symbols.png |binary reporter-1.4.7/reporter/tests/testthat/pdf2/keep.txt |only reporter-1.4.7/reporter/tests/testthat/test-create_table_docx.R | 10 reporter-1.4.7/reporter/tests/testthat/test-docx.R | 388 +++++++ reporter-1.4.7/reporter/tests/testthat/test-html.R | 376 +++++++ reporter-1.4.7/reporter/tests/testthat/test-page_template_docx.R | 14 reporter-1.4.7/reporter/tests/testthat/test-pdf.R | 28 reporter-1.4.7/reporter/tests/testthat/test-pdf2.R | 264 +++++ reporter-1.4.7/reporter/tests/testthat/test-rtf.R | 32 reporter-1.4.7/reporter/tests/testthat/test-rtf2.R | 418 ++++++++ reporter-1.4.7/reporter/tests/testthat/test-sizing_functions.R | 78 + reporter-1.4.7/reporter/tests/testthat/test-system.R | 260 +++++ reporter-1.4.7/reporter/tests/testthat/test-user.R | 516 +++++++++- reporter-1.4.7/reporter/tests/testthat/test-utilities.R | 39 reporter-1.4.7/reporter/vignettes/reporter-faq.Rmd | 2 reporter-1.4.7/reporter/vignettes/reporter-grouping.Rmd |only 119 files changed, 3868 insertions(+), 368 deletions(-)