Title: Compute Decision Interval and Average Run Length for CUSUM
Charts
Description: Computation of decision intervals (H) and average run lengths (ARL) for CUSUM charts. Details of the method are seen in Hawkins and Olwell (2012): Cumulative sum charts and charting for quality improvement, Springer Science & Business Media.
Author: Douglas M. Hawkins [aut],
David H. Olwell [aut],
Boxiang Wang [aut, cre]
Maintainer: Boxiang Wang <boxiang-wang@uiowa.edu>
Diff between CUSUMdesign versions 1.1.7 dated 2026-04-30 and 1.1.8 dated 2026-05-18
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/getH.R | 2 +- src/ANYSUBS.f | 9 ++------- 4 files changed, 10 insertions(+), 15 deletions(-)
Title: Multivariate Spatio-Temporal Models using Structural Equations
Description: Fits a wide variety of multivariate spatio-temporal models
with simultaneous and lagged interactions among variables (including
vector autoregressive spatio-temporal ('VAST') dynamics)
for areal, continuous, or network spatial domains.
It includes time-variable, space-variable, and space-time-variable
interactions using dynamic structural equation models ('DSEM')
as expressive interface, and the 'mgcv' package to specify splines
via the formula interface. See Thorson et al. (2025)
<doi:10.1111/geb.70035> for more details.
Author: James T. Thorson [aut, cre] ,
Sean C. Anderson [aut]
Maintainer: James T. Thorson <James.Thorson@noaa.gov>
Diff between tinyVAST versions 1.5.1 dated 2026-04-14 and 1.6.0 dated 2026-05-18
tinyVAST-1.5.1/tinyVAST/R/sfnetwork.R |only tinyVAST-1.6.0/tinyVAST/DESCRIPTION | 14 tinyVAST-1.6.0/tinyVAST/MD5 | 62 +- tinyVAST-1.6.0/tinyVAST/NAMESPACE | 9 tinyVAST-1.6.0/tinyVAST/NEWS.md | 9 tinyVAST-1.6.0/tinyVAST/R/fit.R | 257 +++++++-- tinyVAST-1.6.0/tinyVAST/R/internal.R | 130 ++++ tinyVAST-1.6.0/tinyVAST/R/methods.R | 5 tinyVAST-1.6.0/tinyVAST/R/predict.R | 65 +- tinyVAST-1.6.0/tinyVAST/R/spatial_domains.R |only tinyVAST-1.6.0/tinyVAST/R/utility.R | 88 +++ tinyVAST-1.6.0/tinyVAST/build/partial.rdb |binary tinyVAST-1.6.0/tinyVAST/build/vignette.rds |binary tinyVAST-1.6.0/tinyVAST/inst/doc/dsem.R | 14 tinyVAST-1.6.0/tinyVAST/inst/doc/dsem.Rmd | 14 tinyVAST-1.6.0/tinyVAST/inst/doc/dsem.html | 50 - tinyVAST-1.6.0/tinyVAST/inst/doc/mgcv.html | 20 tinyVAST-1.6.0/tinyVAST/inst/doc/multiple_data.html | 8 tinyVAST-1.6.0/tinyVAST/inst/doc/spatial.html | 14 tinyVAST-1.6.0/tinyVAST/inst/doc/spatial_factor_analysis.html | 6 tinyVAST-1.6.0/tinyVAST/man/integrate_output.Rd | 7 tinyVAST-1.6.0/tinyVAST/man/make_nngp_domain.Rd |only tinyVAST-1.6.0/tinyVAST/man/plot.nngp_domain.Rd |only tinyVAST-1.6.0/tinyVAST/man/reexports.Rd | 2 tinyVAST-1.6.0/tinyVAST/man/rotate_pca.Rd | 86 +++ tinyVAST-1.6.0/tinyVAST/man/sfnetwork_evaluator.Rd | 2 tinyVAST-1.6.0/tinyVAST/man/sfnetwork_mesh.Rd | 2 tinyVAST-1.6.0/tinyVAST/man/simulate_sfnetwork.Rd | 2 tinyVAST-1.6.0/tinyVAST/man/term_covariance.Rd | 2 tinyVAST-1.6.0/tinyVAST/man/tinyVAST.Rd | 3 tinyVAST-1.6.0/tinyVAST/man/tinyVASTcontrol.Rd | 27 - tinyVAST-1.6.0/tinyVAST/src/Makevars | 2 tinyVAST-1.6.0/tinyVAST/src/tinyVAST.cpp | 262 ++++++++-- tinyVAST-1.6.0/tinyVAST/vignettes/dsem.Rmd | 14 34 files changed, 909 insertions(+), 267 deletions(-)
Title: Unified Framework for Identification and Ecological
Interpretation of Microbial Data from Bioenergy Research
Centers
Description: A unified framework for identification and ecological interpretation of core microbiomes across time and space, enhancing robustness and reproducibility in microbiome data analysis. 'BRCore' implements the workflow proposed by Shade and Stopnisek (2019) and incorporates additional rarefaction steps. The proposed workflow aims to identify persistent microbiomes using abundance-occupancy distributions and neutral community model fitting. For more details on abundance-occupancy distributions see Shade A, Stopnisek N (2019) <doi:10.1016/j.mib.2019.09.008>, for neutral models, see Sloan et al. (2006) <doi:10.1111/j.1462-2920.2005.00956.x> and Burns et al. (2015) <doi:10.1038/ismej.2015.142>.
Author: Bolivar Aponte Rolon [aut, cre] ,
Gian Maria Niccolo Benucci [aut] ,
Brandon Kristy [aut] ,
Ashley Shade [aut] ,
Nejc Stopnisek [aut] ,
Adina Howe [aut] ,
Center for Advanced Bioenergy and Bioproducts Innovation [cph, fnd],
Great Lakes Bioenergy Rese [...truncated...]
Maintainer: Bolivar Aponte Rolon <bolaponte@pm.me>
Diff between BRCore versions 2.0.4 dated 2026-05-05 and 2.0.5 dated 2026-05-18
DESCRIPTION | 25 +-- MD5 | 62 ++++----- NEWS.md | 22 +++ R/add_rarefaction_metrics.R | 2 R/brcore_theme.R | 2 R/identify_core.R | 3 R/multi_rarefy.R | 2 R/plot_identified_core.R | 9 - R/plot_neutral_model.R | 5 R/plot_rarefaction_metrics.R | 2 R/plot_variance_propagation.R | 1 R/sncm.fit.R | 90 ++++++++++--- R/utils-internal_warn_sncm.R |only README.md | 21 +-- inst/doc/BRCore-vignette.Rmd | 34 +++-- inst/doc/BRCore-vignette.html | 148 ++++++++++++----------- man/add_rarefaction_metrics.Rd | 2 man/dot-internal_warn_sncm.Rd |only man/identify_core.Rd | 3 man/multi_rarefy.Rd | 2 man/plot_rarefaction_metrics.Rd | 2 man/plot_variance_propagation.Rd | 1 vignettes/BRCore-vignette.Rmd | 34 +++-- vignettes/BRCore-vignette.Rmd.orig | 3 vignettes/images/fig1_plot_metrics-1.png |binary vignettes/images/fig2_rarefaction_variance-1.png |binary vignettes/images/fig3_identified_core-1.png |binary vignettes/images/fig4_plot_increase-1.png |binary vignettes/images/fig5_plot_elbow-1.png |binary vignettes/images/fig6_plot_type_bar-1.png |binary vignettes/images/fig7_plot_type_line-1.png |binary vignettes/images/fig8_plot_type_heatmap-1.png |binary vignettes/images/fig9_plot_neutral_fit-1.png |binary 33 files changed, 283 insertions(+), 192 deletions(-)
Title: Optimal Pairing and Matching via Linear Assignment
Description: Solves optimal pairing and matching problems using linear assignment
algorithms. Provides implementations of the Hungarian method (Kuhn 1955)
<doi:10.1002/nav.3800020109>, Jonker-Volgenant shortest path algorithm
(Jonker and Volgenant 1987) <doi:10.1007/BF02278710>, Auction algorithm
(Bertsekas 1988) <doi:10.1007/BF02186476>, cost-scaling
(Goldberg and Kennedy 1995) <doi:10.1007/BF01585996>, scaling algorithms
(Gabow and Tarjan 1989) <doi:10.1137/0218069>, push-relabel (Goldberg and
Tarjan 1988) <doi:10.1145/48014.61051>, and Sinkhorn entropy-regularized
transport (Cuturi 2013) <doi:10.48550/arxiv.1306.0895>. Designed for
matching plots, sites, samples, or any pairwise optimization problem.
Supports rectangular matrices, forbidden assignments, data frame inputs,
batch solving, k-best solutions, and pixel-level image morphing for
visualization. Includes automatic preprocessing with variable health
checks, multiple scaling methods (standardized, [...truncated...]
Author: Gilles Colling [aut, cre, cph]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between couplr versions 1.2.0 dated 2026-03-20 and 1.4.0 dated 2026-05-18
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couplr-1.4.0/couplr/man/BIG_COST.Rd | 32 couplr-1.4.0/couplr/man/animated_methods.Rd |only couplr-1.4.0/couplr/man/apply_all_constraints.Rd | 46 couplr-1.4.0/couplr/man/apply_calipers.Rd | 30 couplr-1.4.0/couplr/man/apply_max_distance.Rd | 30 couplr-1.4.0/couplr/man/apply_scaling.Rd | 30 couplr-1.4.0/couplr/man/apply_weights.Rd | 30 couplr-1.4.0/couplr/man/as_matchit.Rd | 121 couplr-1.4.0/couplr/man/assign_blocks_cluster.Rd | 30 couplr-1.4.0/couplr/man/assign_blocks_group.Rd | 30 couplr-1.4.0/couplr/man/assignment.Rd | 14 couplr-1.4.0/couplr/man/assignment_duals.Rd | 142 couplr-1.4.0/couplr/man/augment.Rd | 38 couplr-1.4.0/couplr/man/augment.matching_result.Rd | 100 couplr-1.4.0/couplr/man/auto_encode_categorical.Rd | 46 couplr-1.4.0/couplr/man/autoplot.balance_diagnostics.Rd | 86 couplr-1.4.0/couplr/man/autoplot.matching_result.Rd | 76 couplr-1.4.0/couplr/man/autoplot.sensitivity_analysis.Rd | 42 couplr-1.4.0/couplr/man/bal.tab.matching_result.Rd | 82 couplr-1.4.0/couplr/man/balance_diagnostics.Rd | 250 couplr-1.4.0/couplr/man/balance_table.Rd | 38 couplr-1.4.0/couplr/man/bottleneck_assignment.Rd | 148 couplr-1.4.0/couplr/man/build_cost_matrix.Rd | 46 couplr-1.4.0/couplr/man/calculate_var_balance.Rd | 44 couplr-1.4.0/couplr/man/can_parallelize.Rd | 30 couplr-1.4.0/couplr/man/cardinality_match.Rd | 158 couplr-1.4.0/couplr/man/cem_match.Rd | 176 couplr-1.4.0/couplr/man/check_cost_distribution.Rd | 44 couplr-1.4.0/couplr/man/check_full_matching.Rd | 30 couplr-1.4.0/couplr/man/check_variable_health.Rd | 78 couplr-1.4.0/couplr/man/compute_distance_matrix.Rd | 65 couplr-1.4.0/couplr/man/compute_distances.Rd | 186 couplr-1.4.0/couplr/man/count_valid_pairs.Rd | 30 couplr-1.4.0/couplr/man/couplr-package.Rd | 76 couplr-1.4.0/couplr/man/couplr_emoji.Rd | 36 couplr-1.4.0/couplr/man/couplr_inform.Rd | 30 couplr-1.4.0/couplr/man/couplr_messages.Rd | 20 couplr-1.4.0/couplr/man/couplr_stop.Rd | 30 couplr-1.4.0/couplr/man/couplr_success.Rd | 30 couplr-1.4.0/couplr/man/couplr_warn.Rd | 30 couplr-1.4.0/couplr/man/detect_blocking.Rd | 30 couplr-1.4.0/couplr/man/diagnose_distance_matrix.Rd | 62 couplr-1.4.0/couplr/man/dot-auto_breaks.Rd | 40 couplr-1.4.0/couplr/man/dot-autoplot_hist.Rd | 24 couplr-1.4.0/couplr/man/dot-autoplot_love.Rd | 24 couplr-1.4.0/couplr/man/dot-autoplot_variance.Rd | 24 couplr-1.4.0/couplr/man/dot-blocks_parallel.Rd | 92 couplr-1.4.0/couplr/man/dot-compute_pair_balance.Rd | 24 couplr-1.4.0/couplr/man/dot-couples_blocked.Rd | 90 couplr-1.4.0/couplr/man/dot-couples_from_distance.Rd | 88 couplr-1.4.0/couplr/man/dot-couples_ratio.Rd | 54 couplr-1.4.0/couplr/man/dot-couples_replace.Rd | 46 couplr-1.4.0/couplr/man/dot-couples_single.Rd | 86 couplr-1.4.0/couplr/man/dot-pair_var_diffs.Rd | 24 couplr-1.4.0/couplr/man/dot-rosenbaum_bounds.Rd | 32 couplr-1.4.0/couplr/man/err_invalid_param.Rd | 30 couplr-1.4.0/couplr/man/err_missing_data.Rd | 30 couplr-1.4.0/couplr/man/err_missing_vars.Rd | 30 couplr-1.4.0/couplr/man/err_no_valid_pairs.Rd | 30 couplr-1.4.0/couplr/man/extract_ids.Rd | 30 couplr-1.4.0/couplr/man/extract_matching_vars.Rd | 30 couplr-1.4.0/couplr/man/filter_blocks.Rd | 44 couplr-1.4.0/couplr/man/full_match.Rd | 222 couplr-1.4.0/couplr/man/get_block_id_column.Rd | 30 couplr-1.4.0/couplr/man/greedy_blocks_parallel.Rd | 118 couplr-1.4.0/couplr/man/greedy_couples.Rd | 246 couplr-1.4.0/couplr/man/greedy_couples_blocked.Rd | 64 couplr-1.4.0/couplr/man/greedy_couples_from_distance.Rd | 48 couplr-1.4.0/couplr/man/greedy_couples_single.Rd | 60 couplr-1.4.0/couplr/man/has_blocks.Rd | 30 couplr-1.4.0/couplr/man/has_valid_pairs.Rd | 30 couplr-1.4.0/couplr/man/hospital_staff.Rd | 302 - 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couplr-1.4.0/couplr/src/solvers/network_simplex/solve_network_simplex.cpp | 5 couplr-1.4.0/couplr/src/solvers/solve_auction.cpp | 220 couplr-1.4.0/couplr/src/solvers/solve_hungarian.cpp | 260 couplr-1.4.0/couplr/src/solvers/solve_hungarian.h | 9 couplr-1.4.0/couplr/src/solvers/solve_hungarian_rcpp.cpp | 37 couplr-1.4.0/couplr/src/solvers/solve_jv.cpp | 84 couplr-1.4.0/couplr/src/solvers/solve_jv_duals.cpp | 115 couplr-1.4.0/couplr/src/solvers/solve_munkres.cpp |only couplr-1.4.0/couplr/src/solvers/solve_munkres.h |only couplr-1.4.0/couplr/src/solvers/solve_munkres_rcpp.cpp |only couplr-1.4.0/couplr/tests/testthat/gabow-tarjan/test_gabow_tarjan_moduleB.R | 316 - couplr-1.4.0/couplr/tests/testthat/gabow-tarjan/test_gabow_tarjan_moduleC.R | 334 - couplr-1.4.0/couplr/tests/testthat/gabow-tarjan/test_gabow_tarjan_moduleD.R | 354 - couplr-1.4.0/couplr/tests/testthat/gabow-tarjan/test_gabow_tarjan_moduleE.R | 686 +- couplr-1.4.0/couplr/tests/testthat/gabow-tarjan/test_gabow_tarjan_moduleF.R | 650 +- couplr-1.4.0/couplr/tests/testthat/gabow-tarjan/test_gabow_tarjan_moduleG.R | 1054 +-- couplr-1.4.0/couplr/tests/testthat/gabow-tarjan/test_gabow_tarjan_moduleH.R | 574 +- couplr-1.4.0/couplr/tests/testthat/test-assignment-munkres.R |only couplr-1.4.0/couplr/tests/testthat/test-assignment-push_relabel.R | 25 couplr-1.4.0/couplr/tests/testthat/test-assignment-ssap-bucket.R | 682 +- couplr-1.4.0/couplr/tests/testthat/test-batch-coverage-final.R | 10 couplr-1.4.0/couplr/tests/testthat/test-batch-kbest-extended.R | 18 couplr-1.4.0/couplr/tests/testthat/test-blocks-coverage.R | 16 couplr-1.4.0/couplr/tests/testthat/test-constraints-coverage.R | 20 couplr-1.4.0/couplr/tests/testthat/test-coverage-90-final.R | 39 couplr-1.4.0/couplr/tests/testthat/test-coverage-95.R | 27 couplr-1.4.0/couplr/tests/testthat/test-coverage-boost.R | 17 couplr-1.4.0/couplr/tests/testthat/test-cpp-solvers-coverage.R | 47 couplr-1.4.0/couplr/tests/testthat/test-cycle-cancel-coverage-2.R | 12 couplr-1.4.0/couplr/tests/testthat/test-cycle-cancel-coverage.R | 13 couplr-1.4.0/couplr/tests/testthat/test-cycle-cancel.R | 260 couplr-1.4.0/couplr/tests/testthat/test-distance-cache-coverage.R | 26 couplr-1.4.0/couplr/tests/testthat/test-gabow_tarjan_solver.R | 630 +- couplr-1.4.0/couplr/tests/testthat/test-kbest-coverage-final.R | 7 couplr-1.4.0/couplr/tests/testthat/test-lap-solve-batch-coverage-2.R | 14 couplr-1.4.0/couplr/tests/testthat/test-lap-solve-batch-coverage-3.R | 6 couplr-1.4.0/couplr/tests/testthat/test-lap-solve-batch-coverage.R | 16 couplr-1.4.0/couplr/tests/testthat/test-lap-solve-batch-extended.R | 16 couplr-1.4.0/couplr/tests/testthat/test-lap-solve-coverage.R | 66 couplr-1.4.0/couplr/tests/testthat/test-lap-solve-extended-coverage.R | 41 couplr-1.4.0/couplr/tests/testthat/test-lap-solve-final-coverage.R | 45 couplr-1.4.0/couplr/tests/testthat/test-line-metric.R | 476 - couplr-1.4.0/couplr/tests/testthat/test-matching-core-coverage-2.R | 13 couplr-1.4.0/couplr/tests/testthat/test-matching-core-coverage-3.R | 15 couplr-1.4.0/couplr/tests/testthat/test-matching-core-coverage-4.R | 34 couplr-1.4.0/couplr/tests/testthat/test-matching-core-extended.R | 34 couplr-1.4.0/couplr/tests/testthat/test-matching-diagnostics-extended.R | 27 couplr-1.4.0/couplr/tests/testthat/test-matching-distance-coverage.R | 39 couplr-1.4.0/couplr/tests/testthat/test-matching-join-coverage.R | 21 couplr-1.4.0/couplr/tests/testthat/test-matching-mahalanobis.R | 43 couplr-1.4.0/couplr/tests/testthat/test-matching-parallel-coverage-2.R | 19 couplr-1.4.0/couplr/tests/testthat/test-matching-preprocessing-coverage-2.R | 27 couplr-1.4.0/couplr/tests/testthat/test-matching-preprocessing-coverage.R | 23 couplr-1.4.0/couplr/tests/testthat/test-matching-utils-coverage.R | 41 couplr-1.4.0/couplr/tests/testthat/test-matching-utils-extended.R | 42 couplr-1.4.0/couplr/tests/testthat/test-messages-coverage.R | 17 couplr-1.4.0/couplr/tests/testthat/test-messages-extended.R | 27 couplr-1.4.0/couplr/tests/testthat/test-morph-coverage-boost.R | 38 couplr-1.4.0/couplr/tests/testthat/test-morph-coverage-final.R | 22 couplr-1.4.0/couplr/tests/testthat/test-morph-final-push.R | 13 couplr-1.4.0/couplr/tests/testthat/test-morph-pixel-cpp-coverage.R | 24 couplr-1.4.0/couplr/tests/testthat/test-morph-pixel.R | 614 +- couplr-1.4.0/couplr/tests/testthat/test-morph-tiling-coverage.R | 28 couplr-1.4.0/couplr/tests/testthat/test-morph-tiling-extended.R | 14 couplr-1.4.0/couplr/tests/testthat/test-morph-utils-coverage-2.R | 18 couplr-1.4.0/couplr/tests/testthat/test-morph-utils-coverage-3.R | 14 couplr-1.4.0/couplr/tests/testthat/test-morph-utils-coverage-4.R | 20 couplr-1.4.0/couplr/tests/testthat/test-morph-utils-coverage.R | 20 couplr-1.4.0/couplr/tests/testthat/test-morph-utils-extended.R | 19 couplr-1.4.0/couplr/tests/testthat/test-morph-utils-final.R | 29 couplr-1.4.0/couplr/tests/testthat/test-network-simplex-coverage.R | 12 couplr-1.4.0/couplr/tests/testthat/test-preprocessing-coverage.R | 20 couplr-1.4.0/couplr/tests/testthat/test-rcpp-interface-coverage.R | 21 couplr-1.4.0/couplr/tests/testthat/test-trace-parity.R |only couplr-1.4.0/couplr/tests/testthat/test-utils-extended-2.R | 23 couplr-1.4.0/couplr/vignettes/algorithms.Rmd | 64 284 files changed, 15354 insertions(+), 12187 deletions(-)
Title: Simplified 'HDF5' Interface
Description: A user-friendly interface for the Hierarchical Data Format 5
('HDF5') library designed to "just work." It bundles the necessary
system libraries to ensure easy installation on all platforms. Features
smart defaults that automatically map R objects (vectors, matrices,
data frames) to efficient 'HDF5' types, removing the need to manage
low-level details like dataspaces or property lists. Uses the 'HDF5'
library developed by The HDF Group <https://www.hdfgroup.org/>.
Author: Daniel P. Smith [aut, cre] ,
Alkek Center for Metagenomics and Microbiome Research [cph, fnd]
Maintainer: Daniel P. Smith <dansmith01@gmail.com>
Diff between h5lite versions 2.1.1.0 dated 2026-04-18 and 2.1.1.1 dated 2026-05-18
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 5 +++++ build/vignette.rds |binary inst/doc/matrices.html | 6 +++--- inst/doc/oo-interface.html | 2 +- src/util.c | 4 ++-- tests/tinytests/test-coerce.r | 2 +- 8 files changed, 22 insertions(+), 17 deletions(-)
Title: Energy Burden Analysis Using Net Energy Return Methodology
Description: Calculate and analyze household energy burden using the Net Energy
Return aggregation methodology. Functions support weighted statistical
calculations across geographic and demographic cohorts, with utilities for
formatting results into publication-ready tables. Methods are based on
Scheier & Kittner (2022) <doi:10.1038/s41467-021-27673-y>.
Author: Eric Scheier [aut, cre, cph]
Maintainer: Eric Scheier <eric@scheier.org>
Diff between emburden versions 0.6.1 dated 2026-01-07 and 0.6.2 dated 2026-05-18
DESCRIPTION | 6 ++--- MD5 | 16 +++++++------- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 +-- inst/doc/getting-started.html | 3 +- inst/doc/jss-emburden.html | 38 ++++++++++++++++------------------ inst/doc/methodology.html | 5 ++-- tests/testthat/test-neb-equivalence.R | 8 +++++++ 9 files changed, 44 insertions(+), 36 deletions(-)
Title: Process and Visualise Concept Mapping Data
Description: Concept maps are versatile tools used across disciplines to enhance understanding,
teaching, brainstorming, and information organization. This package provides functions for
processing and visualizing concept mapping data, involving the sequential use of cluster analysis
(for sorting participants and statements), multidimensional scaling (for positioning statements
in a conceptual space), and visualization techniques, including point cluster maps and
dendrograms. The methodology and its validity are discussed in Kampen, J.K., Hageman, J.A.,
Breuer, M., & Tobi, H. (2025). "The validity of concept mapping: let's call a spade a spade."
Qual Quant. <doi:10.1007/s11135-025-02351-z>.
Author: Jos Hageman [aut, cre],
Jarl Kampen [aut]
Maintainer: Jos Hageman <jos.hageman@wur.nl>
Diff between cmAnalysis versions 1.0.1 dated 2025-09-02 and 1.0.3 dated 2026-05-18
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 8 ++++++++ R/checkConceptMapData.R | 6 +++--- R/conceptMapping.R | 12 ++++++++++++ 5 files changed, 31 insertions(+), 11 deletions(-)
Title: Evolutionary Parameter Estimation for 'Repast Simphony' Models
Description: The EvoPER, Evolutionary Parameter Estimation for Individual-based Models is an extensible
package providing optimization driven parameter estimation methods using metaheuristics and
evolutionary computation techniques (Particle Swarm Optimization, Simulated Annealing, Ant Colony Optimization
for continuous domains, Tabu Search, Evolutionary Strategies, ...) which could be more efficient and require,
in some cases, fewer model evaluations than alternatives relying on experimental design. Currently there
are built in support for models developed with 'Repast Simphony' Agent-Based framework (<https://repast.github.io/>)
and with NetLogo (<https://www.netlogo.org/>) which are the most used frameworks for Agent-based modeling.
Author: Antonio Prestes Garcia [aut, cre],
Alfonso Rodriguez-Paton [aut, ths]
Maintainer: Antonio Prestes Garcia <antonio.pgarcia@alumnos.upm.es>
Diff between evoper versions 0.6.0 dated 2026-01-28 and 0.7.0 dated 2026-05-18
DESCRIPTION | 10 ++--- MD5 | 22 ++++++----- NAMESPACE | 17 ++++++--- NEWS | 10 +++++ R/abm-ga.R | 43 ++++++++++++++++++++++ R/abm-tabu.R | 1 R/class-options.R | 4 +- R/evoper.R | 41 +++++++++++++++------ R/test-functions.R | 66 +++++++++++++++++++++++++++++++++++ man/basic_config.Rd |only man/f0.rastrigin.Rd |only man/f0.rastrigin4.Rd |only man/f1.rastrigin.Rd |only tests/testthat/test-metaheuristics.R | 22 +++++++++++ 14 files changed, 204 insertions(+), 32 deletions(-)
Title: Plot a Correlogram
Description: Calculates correlation of variables and displays the results
graphically. Included panel functions can display points, shading,
ellipses, and correlation values with confidence intervals. See
Friendly (2002) <doi:10.1198/000313002533>.
Author: Kevin Wright [aut, cre, cph]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between corrgram versions 1.14 dated 2021-04-29 and 1.15 dated 2026-05-18
corrgram-1.14/corrgram/R/corrgram.R |only corrgram-1.14/corrgram/inst/doc/corrgram_examples.R |only corrgram-1.14/corrgram/inst/doc/corrgram_examples.Rmd |only corrgram-1.14/corrgram/inst/doc/corrgram_examples.html |only corrgram-1.14/corrgram/vignettes/corrgram_examples.Rmd |only corrgram-1.15/corrgram/DESCRIPTION | 36 - corrgram-1.15/corrgram/LICENSE |only corrgram-1.15/corrgram/MD5 | 44 + corrgram-1.15/corrgram/NAMESPACE | 24 corrgram-1.15/corrgram/NEWS.md | 68 +- corrgram-1.15/corrgram/R/corrgram_base.R |only corrgram-1.15/corrgram/R/corrgram_grid.R |only corrgram-1.15/corrgram/R/corrgram_levelplot.R |only corrgram-1.15/corrgram/R/corrgram_splom.R |only corrgram-1.15/corrgram/build/partial.rdb |only corrgram-1.15/corrgram/build/vignette.rds |binary corrgram-1.15/corrgram/inst/doc/corrgram_base.R |only corrgram-1.15/corrgram/inst/doc/corrgram_base.Rmd |only corrgram-1.15/corrgram/inst/doc/corrgram_base.html |only corrgram-1.15/corrgram/inst/doc/corrgram_cov2cor.R | 12 corrgram-1.15/corrgram/inst/doc/corrgram_cov2cor.html | 431 ++++++++++++---- corrgram-1.15/corrgram/inst/doc/corrgram_grid.R |only corrgram-1.15/corrgram/inst/doc/corrgram_grid.Rmd |only corrgram-1.15/corrgram/inst/doc/corrgram_grid.html |only corrgram-1.15/corrgram/inst/doc/corrgram_lattice.R |only corrgram-1.15/corrgram/inst/doc/corrgram_lattice.Rmd |only corrgram-1.15/corrgram/inst/doc/corrgram_lattice.html |only corrgram-1.15/corrgram/man/corrgram.Rd | 47 + corrgram-1.15/corrgram/man/corrgram2.Rd |only corrgram-1.15/corrgram/man/figures/corrgram_grid.png |only corrgram-1.15/corrgram/man/figures/corrgram_lattice.png |only corrgram-1.15/corrgram/man/levelplot_panel.ellipse.Rd |only corrgram-1.15/corrgram/man/splom_panel.pie.Rd |only corrgram-1.15/corrgram/tests/testthat/test_grid.R |only corrgram-1.15/corrgram/tests/testthat/test_lattice.R |only corrgram-1.15/corrgram/vignettes/corrgram_base.Rmd |only corrgram-1.15/corrgram/vignettes/corrgram_grid.Rmd |only corrgram-1.15/corrgram/vignettes/corrgram_lattice.Rmd |only 38 files changed, 497 insertions(+), 165 deletions(-)
More information about vennDiagramLab at CRAN
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More information about rxode2mrgsolvebridge at CRAN
Permanent link
Title: Easy Handling of the CAMELS-CL Dataset
Description: Download and handle spatial and temporal data from the CAMELS-CL dataset (Catchment Attributes and Meteorology for Large Sample Studies, Chile) <https://camels.cr2.cl/>, developed by Alvarez-Garreton et al. (2018) <doi:10.5194/hess-22-5817-2018>. The package does not generate new data, it only facilitates direct access to the original dataset for hydrological analyses.
Author: Hector Garces-Figueroa [aut, cph, cre] ,
Mauricio Zambrano-Bigiarini [aut, cph]
Maintainer: Hector Garces-Figueroa <hegarcesf@gmail.com>
Diff between RcamelsCL versions 0.1-11 dated 2025-09-22 and 0.2-0 dated 2026-05-18
DESCRIPTION | 8 ++-- MD5 | 13 ++++-- NAMESPACE | 5 +- NEWS.md | 15 +++++++ R/getCatchments.R |only R/getData.R | 98 ++++++++++++++++++++++++++++++--------------------- man/figures |only man/getCatchments.Rd |only man/getData.Rd | 55 ++++++++++++++++------------ 9 files changed, 121 insertions(+), 73 deletions(-)
Title: Automated Backtesting of Portfolios over Multiple Datasets
Description: Automated backtesting of multiple portfolios over multiple
datasets of stock prices in a rolling-window fashion. Intended for
researchers and practitioners to backtest a set of different portfolios,
as well as by a course instructor to assess the students in their portfolio
design in a fully automated and convenient manner, with results conveniently
formatted in tables and plots. Each portfolio design is easily defined as a
function that takes as input a window of the stock prices and outputs the
portfolio weights. Multiple portfolios can be easily specified as a list
of functions or as files in a folder. Multiple datasets can be conveniently
extracted randomly from different markets, different time periods, and
different subsets of the stock universe. The results can be later assessed
and ranked with tables based on a number of performance criteria (e.g.,
expected return, volatility, Sharpe ratio, drawdown, turnover rate, return
on investment, computational time, etc.), as well as plo [...truncated...]
Author: Daniel P. Palomar [cre, aut],
Rui Zhou [aut]
Maintainer: Daniel P. Palomar <daniel.p.palomar@gmail.com>
This is a re-admission after prior archival of version 0.4.1 dated 2022-04-22
Diff between portfolioBacktest versions 0.4.1 dated 2022-04-22 and 0.4.2 dated 2026-05-18
DESCRIPTION | 18 MD5 | 30 NAMESPACE | 2 NEWS.md | 5 R/plotsNtables.R | 58 R/portfolioBacktest-package.R | 2 R/portfolioBacktest.R | 12 README.md | 6 build/vignette.rds |binary inst/WORDLIST |only inst/doc/PortfolioBacktest.html | 3847 +++++++++++++++++++++++++++----- man/backtestChartCumReturn.Rd | 4 man/portfolioBacktest-package.Rd | 13 man/portfolioBacktest.Rd | 12 man/summaryTable.Rd | 7 tests/testthat/Rplots.pdf |only tests/testthat/test-portfolioBacktest.R | 25 17 files changed, 3403 insertions(+), 638 deletions(-)
More information about portfolioBacktest at CRAN
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Title: Datasets and Utilities for Essentials of Statistics for the
Behavioral Sciences
Description: Provides instructional datasets and simple wrapper functions
for selected analyses used in 'Essentials of Statistics for the
Behavioral Sciences' (Gravetter et al., 2026).
The package is intended to support textbook examples by distributing
data in a form that is easy for students and instructors to access
within R. Current functionality includes packaged datasets and
convenience wrappers for functions from 'ez', 'pwr', and 'WebPower'
for analysis of variance and statistical power calculations.
Author: James Witnauer [aut, cre]
Maintainer: James Witnauer <jwitnaue@brockport.edu>
Diff between essentialstools versions 0.1.2 dated 2026-03-16 and 0.1.4 dated 2026-05-18
essentialstools-0.1.2/essentialstools/R/data.R |only essentialstools-0.1.4/essentialstools/DESCRIPTION | 20 ++++++++---------- essentialstools-0.1.4/essentialstools/MD5 | 14 +++++++++--- essentialstools-0.1.4/essentialstools/R/data_EVData.R |only essentialstools-0.1.4/essentialstools/R/data_birdRT.R |only essentialstools-0.1.4/essentialstools/R/data_music.R |only essentialstools-0.1.4/essentialstools/data/EVData.rda |only essentialstools-0.1.4/essentialstools/data/birdRT.rda |binary essentialstools-0.1.4/essentialstools/data/music.rda |only essentialstools-0.1.4/essentialstools/man/EVData.Rd |only essentialstools-0.1.4/essentialstools/man/birdRT.Rd | 19 +++++++---------- essentialstools-0.1.4/essentialstools/man/music.Rd |only 12 files changed, 27 insertions(+), 26 deletions(-)
More information about essentialstools at CRAN
Permanent link
Title: Open-Access Computational Biology Datasets
Description: Efficiently access the 'Bedrock Bio' library of open-access
computational biology datasets. Lazily query datasets backed by 'DuckDB'
and 'Apache Iceberg', with support for predicate pushdown and column
projection to the cloud storage backend. This enables quick, iterative
access to otherwise massive, unwieldy datasets without downloading them
in full. See <https://bedrock.bio> for available datasets and
documentation.
Author: Liam Abbott [aut, cre, cph]
Maintainer: Liam Abbott <liam@bedrock.bio>
Diff between bedrockbio versions 1.3.0 dated 2026-04-28 and 1.3.1 dated 2026-05-18
DESCRIPTION | 6 - MD5 | 24 +++--- NEWS.md | 8 +- R/describe_table.R | 2 R/load_table.R | 76 ++------------------ R/utils.R | 70 ++++++------------ R/zzz.R | 2 README.md | 6 - man/load_table.Rd | 14 +-- tests/testthat/test-describe_table.R | 13 +++ tests/testthat/test-list_tables.R | 2 tests/testthat/test-load_table.R | 77 +------------------- tests/testthat/test-utils.R | 133 +++++++++++++++++++++++++++++++++-- 13 files changed, 217 insertions(+), 216 deletions(-)
Title: Poisson Super Learner
Description: Provides tools for fitting piecewise-constant hazard models for survival and competing risks data, including ensemble hazard estimation via the Super Learner framework. The package supports estimation of survival functions and absolute risk predictions from fitted cause-specific hazard models. For the Super Learner framework see van der Laan, Polley and Hubbard (2007) <doi:10.2202/1544-6115.1309>.
Author: Gabriele Pittarello [aut, cre],
Helene Rytgaard [aut],
Thomas Gerds [aut]
Maintainer: Gabriele Pittarello <gabriele.pittarello@sund.ku.dk>
Diff between poissonsuperlearner versions 0.1.1 dated 2026-04-04 and 0.2.0 dated 2026-05-18
poissonsuperlearner-0.1.1/poissonsuperlearner/R/utils.R |only poissonsuperlearner-0.2.0/poissonsuperlearner/DESCRIPTION | 8 poissonsuperlearner-0.2.0/poissonsuperlearner/MD5 | 81 poissonsuperlearner-0.2.0/poissonsuperlearner/R/RcppExports.R | 8 poissonsuperlearner-0.2.0/poissonsuperlearner/R/apply_transformations.R |only poissonsuperlearner-0.2.0/poissonsuperlearner/R/attach_psl_fit_meta.R |only poissonsuperlearner-0.2.0/poissonsuperlearner/R/coef.R | 423 + poissonsuperlearner-0.2.0/poissonsuperlearner/R/create_formula_party.R |only poissonsuperlearner-0.2.0/poissonsuperlearner/R/fill_missing_names.R |only poissonsuperlearner-0.2.0/poissonsuperlearner/R/fit_learner.R | 177 poissonsuperlearner-0.2.0/poissonsuperlearner/R/get_psl_fit_meta.R |only poissonsuperlearner-0.2.0/poissonsuperlearner/R/hal_utils.R |only poissonsuperlearner-0.2.0/poissonsuperlearner/R/is_failed_fit.R |only poissonsuperlearner-0.2.0/poissonsuperlearner/R/learners.R | 3497 ++++++---- poissonsuperlearner-0.2.0/poissonsuperlearner/R/make_failed_fit.R |only poissonsuperlearner-0.2.0/poissonsuperlearner/R/make_validation_skeleton.R |only poissonsuperlearner-0.2.0/poissonsuperlearner/R/predict.R | 1373 ++- poissonsuperlearner-0.2.0/poissonsuperlearner/R/predictRisk.R | 323 poissonsuperlearner-0.2.0/poissonsuperlearner/R/print.R | 632 + poissonsuperlearner-0.2.0/poissonsuperlearner/R/simulateStenoT1.R | 677 + poissonsuperlearner-0.2.0/poissonsuperlearner/R/summary.R | 906 +- poissonsuperlearner-0.2.0/poissonsuperlearner/R/superlearner.R | 929 ++ poissonsuperlearner-0.2.0/poissonsuperlearner/R/zzz.R | 83 poissonsuperlearner-0.2.0/poissonsuperlearner/README.md | 304 poissonsuperlearner-0.2.0/poissonsuperlearner/inst/doc/basicusage.R | 215 poissonsuperlearner-0.2.0/poissonsuperlearner/inst/doc/basicusage.Rmd | 533 - poissonsuperlearner-0.2.0/poissonsuperlearner/inst/doc/basicusage.html | 657 - poissonsuperlearner-0.2.0/poissonsuperlearner/man/Learner_gam-class.Rd | 8 poissonsuperlearner-0.2.0/poissonsuperlearner/man/Learner_glmnet-class.Rd | 18 poissonsuperlearner-0.2.0/poissonsuperlearner/man/Learner_hal-class.Rd | 18 poissonsuperlearner-0.2.0/poissonsuperlearner/man/Superlearner.Rd | 40 poissonsuperlearner-0.2.0/poissonsuperlearner/man/coef.base_learner.Rd | 2 poissonsuperlearner-0.2.0/poissonsuperlearner/man/coef.poisson_superlearner.Rd | 168 poissonsuperlearner-0.2.0/poissonsuperlearner/man/fit_learner.Rd | 2 poissonsuperlearner-0.2.0/poissonsuperlearner/man/poissonsuperlearner-package.Rd | 42 poissonsuperlearner-0.2.0/poissonsuperlearner/man/predict.base_learner.Rd | 2 poissonsuperlearner-0.2.0/poissonsuperlearner/man/predict.poisson_superlearner.Rd | 28 poissonsuperlearner-0.2.0/poissonsuperlearner/man/predictRisk.poisson_superlearner.Rd | 5 poissonsuperlearner-0.2.0/poissonsuperlearner/man/print.poisson_superlearner.Rd | 141 poissonsuperlearner-0.2.0/poissonsuperlearner/man/simulateStenoT1.Rd | 14 poissonsuperlearner-0.2.0/poissonsuperlearner/man/summary.poisson_superlearner.Rd | 159 poissonsuperlearner-0.2.0/poissonsuperlearner/src/RcppExports.cpp | 34 poissonsuperlearner-0.2.0/poissonsuperlearner/src/expand_terminal_grouped.cpp |only poissonsuperlearner-0.2.0/poissonsuperlearner/src/poisson_deviance.cpp | 108 poissonsuperlearner-0.2.0/poissonsuperlearner/tests/testthat.R | 28 poissonsuperlearner-0.2.0/poissonsuperlearner/tests/testthat/test-glmnet-learners.R | 415 - poissonsuperlearner-0.2.0/poissonsuperlearner/vignettes/basicusage.Rmd | 533 - 47 files changed, 8245 insertions(+), 4346 deletions(-)
More information about poissonsuperlearner at CRAN
Permanent link
Title: Changepoint Detection via Modified Genetic Algorithms
Description: The Genetic Algorithm (GA) is used to perform changepoint analysis in time series data. The package also includes an extended island version of GA, as described in Lu, Lund, and Lee (2010, <doi:10.1214/09-AOAS289>). By mimicking the principles of natural selection and evolution, GA provides a powerful stochastic search technique for solving combinatorial optimization problems. In 'changepointGA', each chromosome represents a changepoint configuration, including the number and locations of changepoints, hyperparameters, and model parameters. The package employs genetic operators—selection, crossover, and mutation—to iteratively improve solutions based on the given fitness (objective) function. Key features of 'changepointGA' include encoding changepoint configurations in an integer format, enabling dynamic and simultaneous estimation of model hyperparameters, changepoint configurations, and associated parameters. The detailed algorithmic implementation can be found in the package [...truncated...]
Author: Mo Li [aut, cre],
QiQi Lu [aut]
Maintainer: Mo Li <mo.li@louisiana.edu>
Diff between changepointGA versions 0.1.4 dated 2026-03-28 and 0.1.5 dated 2026-05-18
changepointGA-0.1.4/changepointGA/R/arima_bic_order_pdq.R |only changepointGA-0.1.4/changepointGA/man/arima_bic_order_pdq.Rd |only changepointGA-0.1.4/changepointGA/tests/testthat/test-arima-bic-order-pdq.R |only changepointGA-0.1.5/changepointGA/DESCRIPTION | 14 changepointGA-0.1.5/changepointGA/LICENSE |only changepointGA-0.1.5/changepointGA/MD5 | 30 changepointGA-0.1.5/changepointGA/NAMESPACE | 1 changepointGA-0.1.5/changepointGA/R/arima_bic_order_pq.R | 28 changepointGA-0.1.5/changepointGA/R/cptga-class.R | 88 changepointGA-0.1.5/changepointGA/R/cptgaisl-class.R | 92 changepointGA-0.1.5/changepointGA/inst/doc/vignette.R | 5 changepointGA-0.1.5/changepointGA/inst/doc/vignette.Rmd | 14 changepointGA-0.1.5/changepointGA/inst/doc/vignette.html | 2735 ++++------ changepointGA-0.1.5/changepointGA/man/changepointGA-package.Rd | 1 changepointGA-0.1.5/changepointGA/man/plot.cptga.Rd | 3 changepointGA-0.1.5/changepointGA/man/plot.cptgaisl.Rd | 3 changepointGA-0.1.5/changepointGA/src/ARIMA_BIC.cpp | 14 changepointGA-0.1.5/changepointGA/vignettes/vignette.Rmd | 14 18 files changed, 1506 insertions(+), 1536 deletions(-)
Title: Structural Equation Modeling and Twin Modeling in R
Description: Quickly create, run, and report structural equation models, and twin models.
See '?umx' for help, and umx_open_CRAN_page("umx") for NEWS.
Timothy C. Bates, Michael C. Neale, Hermine H. Maes, (2019). umx: A library for Structural Equation and Twin Modelling in R.
Twin Research and Human Genetics, 22, 27-41. <doi:10.1017/thg.2019.2>.
Author: Timothy C. Bates [aut, cre] ,
Luis De Araujo [ctb],
Nathan Gillespie [wit],
Hermine Maes [ctb],
Michael C. Neale [ctb],
Joshua N. Pritikin [ctb],
Brenton Wiernik [ctb],
Michael Zakharin [wit]
Maintainer: Timothy C. Bates <timothy.c.bates@gmail.com>
Diff between umx versions 4.60.0 dated 2025-11-17 and 4.65.0 dated 2026-05-18
DESCRIPTION | 24 +- MD5 | 68 ++++--- NAMESPACE | 13 + NEWS.md | 9 + R/build_run_modify.R | 18 +- R/financial_functions.R | 237 ++++++++++++++++++++++++++ R/misc_and_utility.R | 355 ++++++++++++++++++++++++++++------------ R/package.R | 86 ++++----- R/umxDoC.R | 4 R/umxPower.R | 2 build/partial.rdb |binary inst/CITATION | 58 ++++-- inst/WORDLIST | 17 + man/deg2rad.Rd | 4 man/fin_FIF.Rd |only man/fin_JustifiedPE.Rd | 6 man/fin_NI.Rd | 8 man/fin_StockCAGR.Rd |only man/fin_carryCost.Rd |only man/fin_expected.Rd | 4 man/fin_interest.Rd | 11 + man/fin_net_present_value.Rd | 4 man/fin_option.Rd |only man/fin_percent.Rd | 4 man/fin_ticker.Rd | 4 man/fin_valuation.Rd | 4 man/rad2deg.Rd | 4 man/umx.Rd | 47 ++--- man/umxBrownie.Rd | 4 man/umxPlotFun.Rd | 40 +--- man/umx_log_wide_twin_data.Rd |only man/umx_long2wide.Rd | 3 man/umx_make_TwinData.Rd | 3 man/umx_make_twin_data_nice.Rd | 3 man/umx_residualize.Rd | 3 man/umx_scale_wide_twin_data.Rd | 3 man/umx_wide2longTwinData.Rd | 3 man/umx_yj_wide_twin_data.Rd |only 38 files changed, 777 insertions(+), 276 deletions(-)
Title: A Simple HTTP Database Interface to 'ClickHouse'
Description: 'ClickHouse' (<https://clickhouse.com/>)
is an open-source, high performance columnar
OLAP (online analytical processing of queries) database management system
for real-time analytics using SQL. This 'DBI' backend
relies on the 'ClickHouse' HTTP interface and support HTTPS protocol.
Author: Patrice Godard [aut, cre, cph],
Eusebiu Marcu [ctb]
Maintainer: Patrice Godard <patrice.godard@gmail.com>
Diff between ClickHouseHTTP versions 0.3.4 dated 2025-06-05 and 1.0.0 dated 2026-05-18
DESCRIPTION | 15 +- MD5 | 18 +- NAMESPACE | 3 R/connection.R | 72 +++++------ R/driver.R | 8 - R/namespace.R | 3 R/result.R | 216 ++++++++++++++++++++++++++++------ man/ClickHouseHTTP.Rd | 2 man/ClickHouseHTTPConnection-class.Rd | 16 +- man/ClickHouseHTTPDriver-class.Rd | 10 - 10 files changed, 261 insertions(+), 102 deletions(-)
More information about ClickHouseHTTP at CRAN
Permanent link
Title: QTL Mapping for Multi Parent Populations
Description: For Multi Parent Populations (MPP) Identity By Descend (IBD)
probabilities are computed using Hidden Markov Models. These probabilities
are then used in a mixed model approach for QTL Mapping as described in
Li et al. (<doi:10.1007/s00122-021-03919-7>).
Author: Martin Boer [aut] ,
Wenhao Li [aut] ,
Bart-Jan van Rossum [aut, cre] ,
Fred van Eeuwijk [ctb]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Diff between statgenMPP versions 1.0.4 dated 2025-02-11 and 1.0.5 dated 2026-05-18
DESCRIPTION | 20 +- MD5 | 30 +-- NAMESPACE | 1 NEWS.md | 4 R/createQTLMPP.R | 2 R/effectPlot.R | 4 R/parCIsPlot.R | 4 R/readRabbitMPP.R | 170 ++++++++++----------- R/reexport.R | 1 README.md | 1 build/partial.rdb |binary build/vignette.rds |binary inst/doc/QTLMapping_in_MultiParentPopulations.html | 55 +++--- inst/tinytest/test_createQTLmpp.R | 106 ++++++------- inst/tinytest/test_selQTLmpp.R | 2 man/statgenMPP-package.Rd | 1 16 files changed, 204 insertions(+), 197 deletions(-)
Title: Rocket-Fast Clinical Research Reporting
Description: Description of the tables, both grouped and not grouped, with some associated data management actions,
such as sorting the terms of the variables and deleting terms with zero numbers.
Author: USMR CHU de Bordeaux [aut, cre],
Valentine Renaudeau [aut],
Marion Kret [aut],
Matisse Decilap [aut],
Sahardid Mohamed Houssein [aut],
Mohamedou Sow [aut],
Thomas Ferte [aut]
Maintainer: USMR CHU de Bordeaux <astreinte.usmr@chu-bordeaux.fr>
Diff between RastaRocket versions 1.1.4 dated 2026-05-01 and 1.1.5 dated 2026-05-18
RastaRocket-1.1.4/RastaRocket/R/indent_table.R |only RastaRocket-1.1.4/RastaRocket/man/indent_table.Rd |only RastaRocket-1.1.5/RastaRocket/DESCRIPTION | 11 RastaRocket-1.1.5/RastaRocket/MD5 | 38 RastaRocket-1.1.5/RastaRocket/NAMESPACE | 3 RastaRocket-1.1.5/RastaRocket/NEWS.md | 11 RastaRocket-1.1.5/RastaRocket/R/base_table.R | 4 RastaRocket-1.1.5/RastaRocket/R/custom_headers.R | 4 RastaRocket-1.1.5/RastaRocket/R/desc_var_function.R | 4 RastaRocket-1.1.5/RastaRocket/R/indent_gt_table.R |only RastaRocket-1.1.5/RastaRocket/R/indent_gtsummary_table.R |only RastaRocket-1.1.5/RastaRocket/R/prepare_table.R | 2 RastaRocket-1.1.5/RastaRocket/inst/doc/DescribeAE.html | 891 +- RastaRocket-1.1.5/RastaRocket/inst/doc/RastaRocketVignette.R | 65 RastaRocket-1.1.5/RastaRocket/inst/doc/RastaRocketVignette.Rmd | 106 RastaRocket-1.1.5/RastaRocket/inst/doc/RastaRocketVignette.html | 3239 ++++------ RastaRocket-1.1.5/RastaRocket/inst/doc/SetupProject.html | 5 RastaRocket-1.1.5/RastaRocket/man/base_table.Rd | 2 RastaRocket-1.1.5/RastaRocket/man/desc_var.Rd | 4 RastaRocket-1.1.5/RastaRocket/man/indent_gt_table.Rd |only RastaRocket-1.1.5/RastaRocket/man/indent_gtsummary_table.Rd |only RastaRocket-1.1.5/RastaRocket/man/write_rendercopy.Rd | 42 RastaRocket-1.1.5/RastaRocket/vignettes/RastaRocketVignette.Rmd | 106 23 files changed, 2063 insertions(+), 2474 deletions(-)
Title: Fitting of Univariate Mixture Distributions to Data using
Various Approaches
Description: Methods for fitting mixture distributions to univariate data using expectation maximization, HWHM and other methods. Supports Gaussian, Cauchy, Student's t, skew-normal and von Mises mixtures. For more details see Merkys (2018) <https://www.lvb.lt/permalink/370LABT_NETWORK/1m6ui06/alma9910036312108451>.
Author: Andrius Merkys [aut, cre]
Maintainer: Andrius Merkys <andrius.merkys@gmail.com>
Diff between MixtureFitting versions 0.6.1 dated 2025-05-23 and 0.8.0 dated 2026-05-18
DESCRIPTION | 12 +-- MD5 | 18 +++- NAMESPACE | 10 ++ R/MixtureFitting.R | 175 +++++++++++++++++++++++++++++++++++++++++++++++- man/aic.Rd |only man/dsnmm.Rd |only man/gmm_fit_em.Rd | 5 + man/llsnmm.Rd |only man/snmm_fit_em.Rd |only man/snmm_init_vector.Rd |only src/MixtureFitting.c | 3 tests/inputs/enzyme.csv |only tests/snmm_fit_em_001.R |only tests/snmm_fit_em_002.R |only 14 files changed, 208 insertions(+), 15 deletions(-)
More information about MixtureFitting at CRAN
Permanent link
Title: A Generator of Multivariate Non-Normal Random Numbers
Description: A data generator of multivariate non-normal data in R. It combines two different methods to generate non-normal data, one with user-specified multivariate skewness and kurtosis (more details can be found in the paper: Qu, Liu, & Zhang, 2019 <doi:10.3758/s13428-019-01291-5>), and the other with the given marginal skewness and kurtosis. The latter one is the widely-used Vale and Maurelli's method. It also contains a function to calculate univariate and multivariate (Mardia's Test) skew and kurtosis.
Author: Wen Qu [aut, cre],
Zhiyong Zhang [aut]
Maintainer: Wen Qu <mnonr.rpackage@gmail.com>
Diff between mnonr versions 1.0.0 dated 2020-02-11 and 1.0.1 dated 2026-05-18
DESCRIPTION | 19 +- MD5 | 9 - NEWS.md |only build/vignette.rds |binary inst/doc/mnonr.R | 2 inst/doc/mnonr.html | 436 +++++++++++++++++++++++++++++++++++----------------- 6 files changed, 315 insertions(+), 151 deletions(-)
Title: Additional Univariate and Multivariate Distributions
Description: Density, distribution function, quantile function
and random generation for a number of univariate
and multivariate distributions. This package implements the
following distributions: Bernoulli, beta-binomial, beta-negative
binomial, beta prime, Bhattacharjee, Birnbaum-Saunders,
bivariate normal, bivariate Poisson, categorical, Dirichlet,
Dirichlet-multinomial, discrete gamma, discrete Laplace,
discrete normal, discrete uniform, discrete Weibull, Frechet,
gamma-Poisson, generalized extreme value, Gompertz,
generalized Pareto, Gumbel, half-Cauchy, half-normal, half-t,
Huber density, inverse chi-squared, inverse-gamma, Kumaraswamy,
Laplace, location-scale t, logarithmic, Lomax, multivariate
hypergeometric, multinomial, negative hypergeometric,
non-standard beta, normal mixture, Poisson mixture, Pareto,
power, reparametrized beta, Rayleigh, shifted Gompertz, Skellam,
slash, triangular, truncated binomial, truncated normal,
truncated Poisson, Tukey lambda, Wald, zero-inflated binomial,
zer [...truncated...]
Author: Tymoteusz Wolodzko [aut],
Sigbert Klinke [cre],
Thomas Farrar [ctb]
Maintainer: Sigbert Klinke <sigbert@wiwi.hu-berlin.de>
Diff between extraDistr versions 1.10.0.3 dated 2026-04-22 and 1.10.0.4 dated 2026-05-18
DESCRIPTION | 11 +++++----- MD5 | 8 +++---- NEWS.md | 4 +++ R/inverse-chi-squared-distribution.R | 37 +++++++++++++++++++++++++++++++---- man/InvChiSq.Rd | 24 ++++++++++++++++++++-- 5 files changed, 69 insertions(+), 15 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-14 0.0.5
2019-03-05 0.0.4
2019-02-01 0.0.3
Title: Easily Access and Maintain Time-Based Versioned Data
(Slowly-Changing-Dimension)
Description: A collection of functions that enable easy access and updating of a database of data over time.
More specifically, the package facilitates type-2 history for data-warehouses and provides a number
of Quality of life improvements for working on SQL databases with R.
For reference see Ralph Kimball and Margy Ross (2013, ISBN 9781118530801).
Author: Rasmus Skytte Randloev [aut, cre, rev] ,
Marcus Munch Gruenewald [aut] ,
Lasse Engbo Christiansen [rev, ctb] ,
Sofia Myrup Otero [rev],
Kim Daniel Jacobsen [ctb],
Statens Serum Institut [cph, fnd]
Maintainer: Rasmus Skytte Randloev <rske@ssi.dk>
Diff between SCDB versions 0.6.0 dated 2026-01-23 and 0.6.1 dated 2026-05-18
DESCRIPTION | 10 - MD5 | 38 +-- NEWS.md | 12 + R/delta-loading.R | 8 R/id.R | 31 --- README.md | 4 inst/doc/SCDB.html | 6 inst/doc/benchmarks.R | 6 inst/doc/benchmarks.Rmd | 6 inst/doc/benchmarks.html | 7 inst/doc/delta-loading.html | 23 +- inst/doc/slowly-changing-dimension.R | 280 ++++++++++++++-------------- inst/doc/slowly-changing-dimension.html | 157 ++++++++++++--- inst/extdata/benchmarks.rds |binary man/Logger.Rd | 319 ++++++++++++++++---------------- man/LoggerNull.Rd | 136 +++++++------ man/SCDB-package.Rd | 1 man/get_connection.Rd | 2 man/joins.Rd | 2 vignettes/benchmarks.Rmd | 6 20 files changed, 583 insertions(+), 471 deletions(-)
Title: Read Linguistic Data in the Cross Linguistic Data Format (CLDF)
Description: Cross-Linguistic Data Format (CLDF) is a framework for storing
cross-linguistic data, ensuring compatibility and ease of data exchange between
different linguistic datasets see Forkel et al. (2018) <doi:10.1038/sdata.2018.205>.
The 'rcldf' package is designed to facilitate the manipulation and analysis of
these datasets by simplifying the loading, querying, and visualisation of CLDF
datasets making it easier to conduct comparative linguistic analyses, manage
language data, and apply statistical methods directly within R.
Author: Simon J. Greenhill [aut, cre]
Maintainer: Simon J. Greenhill <simon@simon.net.nz>
Diff between rcldf versions 1.5.1 dated 2025-09-30 and 1.6.1 dated 2026-05-18
DESCRIPTION | 15 MD5 | 72 NAMESPACE | 11 NEWS.md |only R/as.cldf.wide.R | 23 R/cache.R | 9 R/csvwr_overrides.R | 4 R/datasets.R |only R/get_foreign_keys.R |only R/is_url.R | 2 R/leaflet.R |only R/load_glottolog.R | 7 R/nullify.R | 2 R/read_bib.R | 34 R/schema.R |only R/separate.R | 7 R/subset_cldf.R |only README.md | 115 build/partial.rdb |binary build/vignette.rds |binary inst/doc/using-rcldf.R | 24 inst/doc/using-rcldf.Rmd | 60 inst/doc/using-rcldf.html | 6001 +++++++++++++++++++++++++++++++-- man/datasets.Rd |only man/get_foreign_keys.Rd |only man/load_dataset.Rd |only man/load_dplace.Rd |only man/plot_languages.Rd |only man/plot_parameter.Rd |only man/plot_word.Rd |only man/print.cldf_schema.Rd |only man/rcldf-package.Rd | 2 man/read_bib.Rd | 28 man/schema.Rd |only man/subset_cldf.Rd |only man/update_table.Rd |only tests/testthat/datasets |only tests/testthat/test_cldf.R | 19 tests/testthat/test_datasets.R |only tests/testthat/test_get_foreign_keys.R |only tests/testthat/test_is_url.R | 2 tests/testthat/test_leaflet.R |only tests/testthat/test_load_glottolog.R | 3 tests/testthat/test_read_bib.R | 10 tests/testthat/test_resolve_path.R | 49 tests/testthat/test_schema.R |only tests/testthat/test_subset_cldf.R |only vignettes/using-rcldf.Rmd | 60 48 files changed, 6142 insertions(+), 417 deletions(-)
Title: Neo4j to R
Description: The aim of neo2R is to provide simple and low level connectors
for querying neo4j graph databases (<https://neo4j.com/>).
The objects returned by the query functions are either lists or data.frames
with very little post-processing.
It allows fast processing of queries returning many records.
And it let the users handle post-processing according to the data model
and their needs.
Author: Patrice Godard [aut, cre, cph] ,
Eusebiu Marcu [ctb]
Maintainer: Patrice Godard <patrice.godard@gmail.com>
Diff between neo2R versions 2.4.2 dated 2024-01-18 and 3.0.0 dated 2026-05-18
DESCRIPTION | 26 +-- MD5 | 17 +- NAMESPACE | 3 R/cypher.R | 433 +++++++++++++++++++++++++++++++++-------------------- R/graphRequest.R | 53 +++--- R/import_from_df.R | 245 +++++++++++++++-------------- R/namespace.R |only R/prepCql.R | 34 ++-- R/startGraph.R | 274 +++++++++++++++++++-------------- man/startGraph.Rd | 18 +- 10 files changed, 637 insertions(+), 466 deletions(-)
Title: Fast Functional Mixed Models using Fast Univariate Inference
Description: Implementation of the fast univariate inference approach (Cui et al. (2022) <doi:10.1080/10618600.2021.1950006>, Loewinger et al. (2024) <doi:10.7554/eLife.95802.2>, Xin et al. (2025) <doi:10.7554/eLife.109428.1>) for fitting functional mixed models. User guides and Python package information can be found at <https://github.com/gloewing/photometry_FLMM>.
Author: Erjia Cui [aut],
Gabriel Loewinger [aut],
Al Xin [aut, cre]
Maintainer: Al Xin <axin@andrew.cmu.edu>
Diff between fastFMM versions 1.0.0 dated 2026-01-08 and 1.0.1 dated 2026-05-18
fastFMM-1.0.0/fastFMM/build/partial.rdb |only fastFMM-1.0.1/fastFMM/DESCRIPTION | 16 +- fastFMM-1.0.1/fastFMM/MD5 | 33 ++---- fastFMM-1.0.1/fastFMM/NEWS.md | 8 + fastFMM-1.0.1/fastFMM/R/G_estimate_randint.R | 2 fastFMM-1.0.1/fastFMM/R/fui.R | 141 +++++++++++--------------- fastFMM-1.0.1/fastFMM/R/utils.R | 33 ++---- fastFMM-1.0.1/fastFMM/build/vignette.rds |binary fastFMM-1.0.1/fastFMM/inst/WORDLIST | 6 - fastFMM-1.0.1/fastFMM/inst/doc/d2pvt.Rmd | 80 +++++--------- fastFMM-1.0.1/fastFMM/inst/doc/d2pvt.html | 99 +++++++----------- fastFMM-1.0.1/fastFMM/inst/doc/fastFMM.Rmd | 50 ++++----- fastFMM-1.0.1/fastFMM/inst/doc/fastFMM.html | 64 ++++------- fastFMM-1.0.1/fastFMM/man/d2pvt.Rd | 9 - fastFMM-1.0.1/fastFMM/man/fui.Rd | 4 fastFMM-1.0.1/fastFMM/vignettes/d2pvt.Rmd | 80 +++++--------- fastFMM-1.0.1/fastFMM/vignettes/fastFMM.Rmd | 50 ++++----- fastFMM-1.0.1/fastFMM/vignettes/vignettes.bib | 25 ++-- 18 files changed, 296 insertions(+), 404 deletions(-)
Title: Algorithm Driven Time Series Analysis for Researchers without
Coding Skills
Description: Support functions for R-based 'EQUAL-STATS' software which automatically classifies the data and performs appropriate statistical tests. 'EQUAL-STATS' software is a shiny application with an user-friendly interface to perform complex statistical analysis. Gurusamy,K (2024)<doi:10.5281/zenodo.13354162>.
Author: Kurinchi Gurusamy [aut, cre]
Maintainer: Kurinchi Gurusamy <k.gurusamy@ucl.ac.uk>
Diff between EQUALrepeat versions 0.4.0 dated 2024-09-06 and 0.4.5 dated 2026-05-18
DESCRIPTION | 13 ++++++------- MD5 | 8 ++++---- NAMESPACE | 1 - R/function.Measurement_Error.R | 22 +++++++++++++++------- man/function.Measurement_Error.Rd | 9 ++++----- 5 files changed, 29 insertions(+), 24 deletions(-)
Title: Import Surface Meteorological Data from NOAA
Description: Functions to import data from more than 30,000 surface
meteorological sites around the world managed by the National Oceanic
and Atmospheric Administration (NOAA) Global Historical Climate
Network (GHCN) and Integrated Surface Database (ISD).
Author: David Carslaw [aut, cre] ,
Jack Davison [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between worldmet versions 1.0.0 dated 2026-02-02 and 1.1.0 dated 2026-05-18
DESCRIPTION | 10 - MD5 | 48 ++++----- NEWS.md | 24 ++++ R/deprecated.R | 17 +-- R/import_ghcn_hourly.R | 132 ++++++++++++++------------ R/import_ghcn_monthly.R | 3 R/import_ghcn_stations.R | 200 ++++++++++++++++++++++++++------------- R/import_isd_lite.R | 7 + R/import_isd_stations.R | 202 +++++++++++++++++++++++++--------------- R/utils.R | 41 +++++++- R/write_met.R | 9 - man/deprecated-isd.Rd | 26 ++--- man/import_ghcn_countries.Rd | 12 +- man/import_ghcn_daily.Rd | 12 +- man/import_ghcn_hourly.Rd | 12 +- man/import_ghcn_inventory.Rd | 12 +- man/import_ghcn_monthly.Rd | 12 +- man/import_ghcn_stations.Rd | 23 +++- man/import_isd_hourly.Rd | 8 - man/import_isd_lite.Rd | 8 - man/import_isd_stations.Rd | 56 +++++------ man/import_isd_stations_live.Rd | 8 - man/worldmet-package.Rd | 1 man/write_adms.Rd | 4 man/write_met.Rd | 15 +- 25 files changed, 555 insertions(+), 347 deletions(-)
Title: Modern Classes for Tracking and Movement Data
Description: Modern classes for tracking and movement data, building
on 'sf' spatial infrastructure, and early theoretical work from
Turchin (1998, ISBN: 9780878938476), and Calenge et al. (2009)
<doi:10.1016/j.ecoinf.2008.10.002>. Tracking data are series of
locations with at least 2-dimensional spatial coordinates (x,y), a
time index (t), and individual identification (id) of the object
being monitored; movement data are made of trajectories, i.e. the
line representation of the path, composed by steps (the
straight-line segments connecting successive locations). 'sftrack'
is designed to handle movement of both living organisms and
inanimate objects.
Author: Matthew Boone [aut] ,
Rocio Joo [aut] ,
Mathieu Basille [aut, cre]
Maintainer: Mathieu Basille <mathieu@basille.org>
Diff between sftrack versions 0.5.4 dated 2023-03-16 and 0.5.5 dated 2026-05-18
DESCRIPTION | 59 ++--- MD5 | 24 +- NEWS.md | 5 README.md | 97 ++++---- TODO | 65 ++++- build/vignette.rds |binary inst/doc/sftrack1_overview.R | 2 inst/doc/sftrack1_overview.html | 307 ++++++++++++++++++-------- inst/doc/sftrack2_reading.R | 2 inst/doc/sftrack2_reading.html | 406 ++++++++++++++++++++--------------- inst/doc/sftrack3_workingwith.html | 423 +++++++++++++++++++++---------------- inst/doc/sftrack4_groups.html | 335 +++++++++++++++-------------- inst/doc/sftrack5_spatial.html | 400 +++++++++++++++++++--------------- 13 files changed, 1245 insertions(+), 880 deletions(-)
Title: Enhance Reproducibility of R Code
Description: A collection of high-level, machine- and OS-independent tools
for making reproducible and reusable content in R.
The two workhorse functions are 'Cache()' and 'prepInputs()'.
'Cache()' allows for nested caching, is robust to environments and objects
with environments (like functions), and deals with some classes of
file-backed R objects e.g., from 'terra' and 'raster' packages.
Both functions have been developed to be foundational components of data
retrieval and processing in continuous workflow situations. In both functions,
efforts are made to make the first and subsequent calls of functions have
the same result, but faster at subsequent times by way of checksums
and digesting. Several features are still under development, including
cloud storage of cached objects allowing for sharing between users. Several
advanced options are available, see '?reproducibleOptions()'.
Author: Eliot J B McIntire [aut, cre] ,
Alex M Chubaty [aut] ,
Tati Micheletti [ctb] ,
Ceres Barros [ctb] ,
Ian Eddy [ctb] ,
His Majesty the King in Right of Canada, as represented by the Minister
of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between reproducible versions 3.1.0 dated 2026-05-16 and 3.1.1 dated 2026-05-18
DESCRIPTION | 8 MD5 | 14 NEWS.md | 9 inst/doc/Intro-to-Cache.html | 1050 ++++++++++++++-------------- man/pkgEnv.Rd | 6 man/reproducible-package.Rd | 1 man/unrarPath.Rd | 5 tests/testthat/test-destinationPathShared.R | 11 8 files changed, 553 insertions(+), 551 deletions(-)
Title: Posetic Data Analysis
Description: Build and manipulate partially ordered sets (posets), to perform some data analysis
on them and to implement multi-criteria decision making procedures. Several efficient ways for generating linear extensions are implemented, together with functions for building mutual ranking probabilities, incomparability, dominance and separation scores (Fattore, M., De Capitani, L., Avellone, A., Suardi, A. (2024). A fuzzy posetic toolbox for multi-criteria evaluation on ordinal data systems. ANNALS OF OPERATIONS RESEARCH <doi:10.1007/s10479-024-06352-3>).
Author: Alessandro Avellone [aut, cre],
Lucio De Capitani [aut],
Marco Fattore [aut]
Maintainer: Alessandro Avellone <alessandro.avellone@unimib.it>
Diff between poseticDataAnalysis versions 1.0.0 dated 2025-12-10 and 1.1.0 dated 2026-05-18
DESCRIPTION | 8 MD5 | 138 +++++------ man/BLSDominance.Rd | 6 man/BidimentionalPosetRepresentation.Rd | 20 - man/BinaryVariablePOSet.Rd | 2 man/BubleyDyerEvaluation.Rd | 34 +- man/BubleyDyerMRP.Rd | 32 +- man/BubleyDyerMRPGenerator.Rd | 12 - man/BubleyDyerSeparation.Rd | 20 - man/BuildBubleyDyerEvaluationGenerator.Rd | 18 - man/BuildBubleyDyerSeparationGenerator.Rd | 12 - man/ComparabilitySetOf.Rd | 6 man/CoverMatrix.Rd | 4 man/CoverRelation.Rd | 6 man/CrownPOSet.Rd | 2 man/DisjointSumPOSet.Rd | 24 +- man/DominanceMatrix.Rd | 6 man/Dominates.Rd | 6 man/DownsetOf.Rd | 6 man/DualPOSet.Rd | 10 man/ExactEvaluation.Rd | 14 - man/ExactMRP.Rd | 10 man/ExactSeparation.Rd | 14 - man/FencePOSet.Rd | 2 man/FuzzyInBetweenness.Rd | 8 man/FuzzyInBetweennessMinMax.Rd | 8 man/FuzzyInBetweennessProbabilistic.Rd | 8 man/FuzzySeparation.Rd | 6 man/FuzzySeparationMinMax.Rd | 6 man/FuzzySeparationProbabilistic.Rd | 6 man/IncomparabilityRelation.Rd | 4 man/IncomparabilitySetOf.Rd | 6 man/IntersectionPOSet.Rd | 20 - man/IsComparableWith.Rd | 6 man/IsDominatedBy.Rd | 6 man/IsDownset.Rd | 6 man/IsExtensionOf.Rd | 8 man/IsIncomparableWith.Rd | 6 man/IsMaximal.Rd | 6 man/IsMinimal.Rd | 6 man/IsUpset.Rd | 6 man/LEBubleyDyer.Rd | 12 - man/LEGenerator.Rd | 12 - man/LEGet.Rd | 46 +-- man/LexMRP.Rd | 16 - man/LexSeparation.Rd | 16 - man/LexicographicProductPOSet.Rd | 24 +- man/LiftingPOSet.Rd | 8 man/LinearPOSet.Rd | 4 man/LinearSumPOSet.Rd | 24 +- man/OptimalBidimensionalEmbedding.Rd | 36 +-- man/OrderRelation.Rd | 6 man/POSet.Rd | 8 man/POSetElements.Rd | 6 man/POSetJoin.Rd | 8 man/POSetMaximals.Rd | 6 man/POSetMeet.Rd | 8 man/POSetMinimals.Rd | 6 man/ProductPOSet.Rd | 24 +- man/UpsetOf.Rd | 6 man/poseticDataAnalysis-package.Rd | 1 src/bucketOrder.cpp | 28 +- src/dimensionalityReduction.cpp | 358 ++++++------------------------ src/dimensionalityReduction.h | 27 -- src/displayMessage.h | 11 src/linearExtensionGenerator.h | 82 +++--- src/linearGeneratorWrapper.cpp | 101 ++++---- src/lossFunctionMRP.h | 52 ++-- src/poset.cpp | 151 +++++------- src/separation.cpp | 58 ++-- 70 files changed, 707 insertions(+), 972 deletions(-)
More information about poseticDataAnalysis at CRAN
Permanent link
Title: Native 'LaTeX' Math Rendering for Grid Graphics
Description: Renders 'LaTeX' math equations as native R grid graphics objects
(grobs) using the 'MicroTeX' 'C++' library as the layout engine. Produces
resolution-independent vector output that works on any R graphics device,
with no external 'LaTeX' installation required.
Author: Alim Dayim [aut, cre] ,
Nano Michael [cph] ,
Bundled math font authors [cph]
Maintainer: Alim Dayim <ad938@cam.ac.uk>
Diff between gridmicrotex versions 0.0.2 dated 2026-05-16 and 0.0.3 dated 2026-05-18
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS.md | 10 ++++++---- R/fonts.R | 16 ++++++++-------- inst/doc/getting-started.html | 8 ++++---- man/load_font.Rd | 16 ++++++++-------- src/MicroTeX/lib/atom/atom_misc.cpp | 6 ++++++ src/MicroTeX/lib/atom/atom_misc.h | 2 +- src/MicroTeX/lib/core/formula_def.cpp | 2 ++ src/MicroTeX/lib/macro/macro_def.cpp | 2 ++ src/MicroTeX/lib/macro/macro_misc.cpp | 20 ++++++++++++++++++++ src/MicroTeX/lib/macro/macro_misc.h | 6 ++++++ tests/testthat/Rplots.pdf |binary 13 files changed, 78 insertions(+), 40 deletions(-)
Title: Create Data Frames for Exchange and Reuse
Description: The 'dataset' package helps create semantically rich,
machine-readable, and interoperable datasets in R. It extends tidy
data frames with metadata that preserves meaning, improves
interoperability, and makes datasets easier to publish, exchange,
and reuse in line with ISO and W3C standards.
Author: Daniel Antal [aut, cre] ,
Marcelo Perlin [rev] ,
Anna Marta Mester [rev] ,
Mauro Lepore [rev]
Maintainer: Daniel Antal <daniel.antal@dataobservatory.eu>
This is a re-admission after prior archival of version 0.4.1 dated 2025-11-16
Diff between dataset versions 0.4.1 dated 2025-11-16 and 0.4.4 dated 2026-05-18
DESCRIPTION | 10 +- MD5 | 120 +++++++++++++++---------------- NAMESPACE | 1 NEWS.md | 8 ++ R/as.POSIXct.R | 22 ++--- R/as.data.frame.R | 16 ++-- R/as_character.R | 9 +- R/as_factor.R | 12 +-- R/as_numeric.R | 11 +- R/bibrecord.R | 19 ++-- R/dataset_df.R | 41 +++++----- R/defined.R | 1 R/dublincore.R | 33 ++++---- R/dublincore_to_triples.R | 5 - R/subject.R | 1 R/var_unit.R | 1 R/xsd_convert.R | 1 README.md | 17 +++- inst/CITATION | 12 +-- inst/doc/dataset_df.R | 5 - inst/doc/dataset_df.Rmd | 5 - inst/doc/dataset_df.html | 35 ++++----- inst/doc/defined.R | 2 inst/doc/defined.Rmd | 2 inst/doc/defined.html | 2 inst/doc/design.html | 12 +-- inst/doc/introduction.R | 26 ++++-- inst/doc/introduction.Rmd | 26 ++++-- inst/doc/introduction.html | 99 +++++++++++++------------ inst/doc/rdf.html | 10 +- man/as.POSIXct.haven_labelled_defined.Rd | 2 man/as_numeric.Rd | 10 +- man/bibrecord.Rd | 6 - man/contributor.Rd | 26 +++--- man/creator.Rd | 26 +++--- man/datacite.Rd | 6 - man/dataset_df.Rd | 4 + man/dataset_format.Rd | 26 +++--- man/dataset_title.Rd | 26 +++--- man/description.Rd | 26 +++--- man/dublincore.Rd | 6 - man/geolocation.Rd | 26 +++--- man/get_bibentry.Rd | 26 +++--- man/language.Rd | 28 +++---- man/publication_year.Rd | 26 +++--- man/publisher.Rd | 26 +++--- man/relation.Rd | 26 +++--- man/rights.Rd | 26 +++--- man/subject.Rd | 26 +++--- man/var_label.Rd | 8 +- man/var_labels.Rd | 10 +- man/var_namespace.Rd | 8 +- man/var_unit.Rd | 8 +- tests/testthat/test-as.POSIXct.R | 5 - tests/testthat/test-as.data.frame.R | 10 +- tests/testthat/test-as_factor.R | 1 tests/testthat/test-as_numeric.R | 2 tests/testthat/test-bibrecord.R | 12 ++- vignettes/dataset_df.Rmd | 5 - vignettes/defined.Rmd | 2 vignettes/introduction.Rmd | 26 ++++-- 61 files changed, 545 insertions(+), 490 deletions(-)
Title: Integration of 'Blimp' Software into R
Description: Provides an interface to 'Blimp' software for Bayesian latent variable modeling,
missing data analysis, and multiple imputation. The package generates 'Blimp' syntax,
executes 'Blimp' models, and imports results back into 'R' as structured objects with
methods for visualization and analysis. Requires 'Blimp' software (freely available
at <https://www.appliedmissingdata.com/blimp>) to be installed separately.
Author: Brian T. Keller [aut, cre, cph]
Maintainer: Brian T. Keller <btkeller@missouri.edu>
Diff between rblimp versions 1.1.0 dated 2026-04-14 and 1.2.0 dated 2026-05-18
DESCRIPTION | 6 - MD5 | 31 ++++---- NAMESPACE | 2 NEWS.md | 29 +++++++ R/detect_blimp.R | 67 +++++++++++++---- R/install_blimp.R |only R/rblimp_getting_started.R | 159 ++++++++++++++++++++---------------------- R/rblimp_source.R | 7 + R/trace_plot.R | 8 +- R/update_blimp.R | 116 +++++++++++++++++++----------- R/zzz.R | 15 ++- README.md | 37 ++++++--- man/detect_blimp.Rd | 25 +++++- man/install_blimp.Rd |only man/rblimp_getting_started.Rd | 78 ++++++++++---------- man/rblimp_source.Rd | 3 man/uninstall_blimp.Rd |only man/update_blimp.Rd | 30 ++++++- 18 files changed, 385 insertions(+), 228 deletions(-)
Title: Joint Covariance and Treatment-Effect Tests for Multiple
Outcomes
Description: Fits generalized linear models, Cox proportional-hazards
models, log-rank tests, generalized estimating equations, mixed models
with repeated measures, Kaplan-Meier curves, and quantile differences
jointly across multiple endpoints, and returns the full asymptotic
covariance matrix linking them. Implements PATED (Prognostic Assisted
Treatment Effect Detection), a randomized-trial method that
exploits balanced prognostic covariates to tighten standard errors and
increase statistical power without introducing bias.
Author: Han Zhang [aut, cre]
Maintainer: Han Zhang <zhangh.ustc@gmail.com>
Diff between multipleOutcomes versions 0.4 dated 2024-05-30 and 0.16.2 dated 2026-05-18
multipleOutcomes-0.16.2/multipleOutcomes/DESCRIPTION | 34 - multipleOutcomes-0.16.2/multipleOutcomes/LICENSE | 4 multipleOutcomes-0.16.2/multipleOutcomes/MD5 | 117 +++ multipleOutcomes-0.16.2/multipleOutcomes/NAMESPACE | 74 ++ multipleOutcomes-0.16.2/multipleOutcomes/NEWS.md |only multipleOutcomes-0.16.2/multipleOutcomes/R/BaseAdapter.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/CoxphAdapter.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/FisherInformation.R | 4 multipleOutcomes-0.16.2/multipleOutcomes/R/GEEAdapter.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/GLMAdapter.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/IDMapping.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/KMAdapter.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/LogRankAdapter.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/MMRMAdapter.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/QuantileAdapter.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/asymptoticJointCovariance.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/bootstrapJointCovariance.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/coef.jointCovariance.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/comparePointwiseConfidenceIntervalWidth.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/coxph_.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/createKaplanMeierCurve.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/extractKaplanMeierTimes.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/fitKMCurve.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/gFunction.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/gInverseFunction.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/gee.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/gee_.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/geeliv.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/glm_.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/goodSimulation.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/imatCoxph.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/indo.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/jointCovariance.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/jointCovariance.default.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/km_.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/logrank_.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/make_adapter.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/matrixSquareRoot.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/mmrm_.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/package-imports.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/parseTreatmentVariableFromCall.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/pated.R | 294 ++++++++-- multipleOutcomes-0.16.2/multipleOutcomes/R/print.summary.jointCovariance.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/quantile_.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/sampleWithReplacement.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/simulateMoData.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/summary.jointCovariance.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/validate_data_index.R |only multipleOutcomes-0.16.2/multipleOutcomes/R/vcov.jointCovariance.R |only multipleOutcomes-0.16.2/multipleOutcomes/README.md |only multipleOutcomes-0.16.2/multipleOutcomes/build/partial.rdb |only multipleOutcomes-0.16.2/multipleOutcomes/data/indo.rda |only multipleOutcomes-0.16.2/multipleOutcomes/inst/WORDLIST |only multipleOutcomes-0.16.2/multipleOutcomes/inst/testdata |only multipleOutcomes-0.16.2/multipleOutcomes/man/coef.jointCovariance.Rd |only multipleOutcomes-0.16.2/multipleOutcomes/man/coxph_.Rd |only multipleOutcomes-0.16.2/multipleOutcomes/man/figures |only multipleOutcomes-0.16.2/multipleOutcomes/man/gee_.Rd |only multipleOutcomes-0.16.2/multipleOutcomes/man/glm_.Rd |only multipleOutcomes-0.16.2/multipleOutcomes/man/indo.Rd |only multipleOutcomes-0.16.2/multipleOutcomes/man/jointCovariance.Rd |only multipleOutcomes-0.16.2/multipleOutcomes/man/km_.Rd |only multipleOutcomes-0.16.2/multipleOutcomes/man/logrank_.Rd |only multipleOutcomes-0.16.2/multipleOutcomes/man/mmrm_.Rd |only multipleOutcomes-0.16.2/multipleOutcomes/man/pated.Rd | 87 ++ multipleOutcomes-0.16.2/multipleOutcomes/man/plot.pated.Rd |only multipleOutcomes-0.16.2/multipleOutcomes/man/print.summary.jointCovariance.Rd |only multipleOutcomes-0.16.2/multipleOutcomes/man/quantile_.Rd |only multipleOutcomes-0.16.2/multipleOutcomes/man/simulateMoData.Rd |only multipleOutcomes-0.16.2/multipleOutcomes/man/summary.jointCovariance.Rd |only multipleOutcomes-0.16.2/multipleOutcomes/man/vcov.jointCovariance.Rd |only multipleOutcomes-0.16.2/multipleOutcomes/src |only multipleOutcomes-0.16.2/multipleOutcomes/tests |only multipleOutcomes-0.4/multipleOutcomes/R/checkInput.R |only multipleOutcomes-0.4/multipleOutcomes/R/coef.multipleOutcomes.R |only multipleOutcomes-0.4/multipleOutcomes/R/dfbeta.R |only multipleOutcomes-0.4/multipleOutcomes/R/multipleOutcomes.R |only multipleOutcomes-0.4/multipleOutcomes/R/multipleOutcomes.default.R |only multipleOutcomes-0.4/multipleOutcomes/R/print.summary.multipleOutcomes.R |only multipleOutcomes-0.4/multipleOutcomes/R/summary.multipleOutcomes.R |only multipleOutcomes-0.4/multipleOutcomes/R/vcov.multipleOutcomes.R |only multipleOutcomes-0.4/multipleOutcomes/build/vignette.rds |only multipleOutcomes-0.4/multipleOutcomes/inst/doc |only multipleOutcomes-0.4/multipleOutcomes/man/coef.multipleOutcomes.Rd |only multipleOutcomes-0.4/multipleOutcomes/man/multipleOutcomes.Rd |only multipleOutcomes-0.4/multipleOutcomes/man/print.summary.multipleOutcomes.Rd |only multipleOutcomes-0.4/multipleOutcomes/man/summary.multipleOutcomes.Rd |only multipleOutcomes-0.4/multipleOutcomes/man/vcov.multipleOutcomes.Rd |only multipleOutcomes-0.4/multipleOutcomes/vignettes |only 89 files changed, 492 insertions(+), 122 deletions(-)
More information about multipleOutcomes at CRAN
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Title: High-Dimensional Cure Models
Description: Provides functions for fitting various penalized parametric and semi-parametric mixture cure models with different penalty functions, testing for a significant cure fraction, and testing for sufficient follow-up as described in Fu et al (2022)<doi:10.1002/sim.9513> and Archer et al (2024)<doi:10.1186/s13045-024-01553-6>. False discovery rate controlled variable selection is provided using model-X knock-offs.
Author: Han Fu [aut],
Kellie J. Archer [aut, cre] ,
Tung Lam Nguyen [rev] ,
Panagiotis Papastamoulis [rev]
Maintainer: Kellie J. Archer <archer.43@osu.edu>
Diff between hdcuremodels versions 0.0.7 dated 2026-05-15 and 0.0.8 dated 2026-05-18
DESCRIPTION | 8 +++--- MD5 | 52 ++++++++++++++++++++-------------------- R/auc_mcm.R | 2 - R/coef.R | 6 ++-- R/concordance_mcm.R | 2 - R/cure_estimate.R | 2 - R/cureem.R | 2 - R/curegmifs.R | 2 - R/cv_curegmifs.R | 6 +++- R/nonzerocure_test.R | 4 +-- R/plot.R | 6 ++-- R/predict.R | 6 ++-- R/print.R | 6 ++-- R/summary.R | 6 ++-- man/auc_mcm.Rd | 2 - man/coef.mixturecure.Rd | 6 ++-- man/concordance_mcm.Rd | 2 - man/cure_estimate.Rd | 2 - man/cureem.Rd | 2 - man/curegmifs.Rd | 2 - man/cv_curegmifs.Rd | 6 +++- man/nonzerocure_test.Rd | 4 +-- man/plot.mixturecure.Rd | 6 ++-- man/predict.mixturecure.Rd | 6 ++-- man/print.mixturecure.Rd | 6 ++-- man/summary.mixturecure.Rd | 6 ++-- tests/testthat/test-cv_cureem.R | 1 27 files changed, 82 insertions(+), 79 deletions(-)
Title: Execute and View Data Quality Checks on OMOP CDM Database
Description: Assesses data quality in Observational Medical Outcomes Partnership Common Data Model (OMOP CDM) databases. Executes data quality checks and provides an R 'shiny' application to view the results.
Author: Katy Sadowski [aut, cre],
Clair Blacketer [aut],
Maxim Moinat [aut],
Ajit Londhe [aut],
Anthony Sena [aut],
Anthony Molinaro [aut],
Frank DeFalco [aut],
Pavel Grafkin [aut]
Maintainer: Katy Sadowski <sadowski@ohdsi.org>
This is a re-admission after prior archival of version 2.8.7 dated 2026-03-22
Diff between DataQualityDashboard versions 2.8.7 dated 2026-03-22 and 2.8.9 dated 2026-05-18
DESCRIPTION | 10 - MD5 | 42 +++--- NEWS.md | 134 +++++++++------------ R/evaluateThresholds.R | 2 R/executeDqChecks.R | 14 +- inst/csv/OMOP_CDMv5.2_Concept_Level.csv | 2 inst/csv/OMOP_CDMv5.3_Concept_Level.csv | 2 inst/csv/OMOP_CDMv5.4_Concept_Level.csv | 2 inst/doc/AddNewCheck.html | 2 inst/doc/CheckStatusDefinitions.html | 2 inst/doc/DataQualityDashboard.html | 2 inst/doc/DqdForCohorts.html | 2 inst/doc/SqlOnly.html | 2 inst/doc/Thresholds.html | 2 tests/testthat/setup.R | 24 ++- tests/testthat/test-calculateNotApplicableStatus.R | 4 tests/testthat/test-convertResultsCase.R | 1 tests/testthat/test-executeDqChecks.R | 17 ++ tests/testthat/test-plausibleAfterBirth.R | 1 tests/testthat/test-reEvaluateThresholds.R | 1 tests/testthat/test-writeDBResultsTo.R | 1 tests/testthat/test-writeJsonResultsTo.R | 2 22 files changed, 149 insertions(+), 122 deletions(-)
More information about DataQualityDashboard at CRAN
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Title: Graphs and Tables for OMOP Results
Description: Provides methods to transform omop_result objects into
formatted tables and figures, facilitating the visualisation of study
results working with the Observational Medical Outcomes Partnership
(OMOP) Common Data Model.
Author: Marti Catala [aut] ,
Nuria Mercade-Besora [aut, cre] ,
Yuchen Guo [ctb] ,
Elin Rowlands [ctb] ,
Marta Alcalde-Herraiz [ctb] ,
Edward Burn [ctb]
Maintainer: Nuria Mercade-Besora <nuria.mercadebesora@ndorms.ox.ac.uk>
Diff between visOmopResults versions 1.4.2 dated 2026-02-04 and 1.5.0 dated 2026-05-18
DESCRIPTION | 17 - MD5 | 79 +++---- NAMESPACE | 1 NEWS.md | 6 R/documentationHelper.R | 2 R/formatTable.R | 7 R/fxTable.R | 134 ++++++------- R/plot.R | 378 ++++++++++++++++++++++++++++++++++++- R/plottingThemes.R | 127 ++++++++++++ R/styles.R | 166 ++++++++-------- R/utilities.R | 6 R/visOmopTable.R | 2 R/visTable.R | 1 inst/brand/darwin.yml | 24 +- inst/brand/default.yml | 10 inst/darwinReportExample.docx |binary inst/darwinReportExample.qmd | 16 - inst/doc/a01_tables.html | 344 ++++++++++++++++----------------- inst/doc/a02_plots.R | 63 ++++++ inst/doc/a02_plots.Rmd | 95 +++++++++ inst/doc/a02_plots.html | 185 ++++++++++++------ inst/doc/a03_quarto_reports.Rmd | 2 inst/doc/a03_quarto_reports.html | 8 inst/doc/a05_style.R | 16 - inst/doc/a05_style.Rmd | 18 - inst/doc/a05_style.html | 288 +++++++++++++++------------- man/alluvialPlot.Rd |only man/barPlot.Rd | 6 man/boxPlot.Rd | 6 man/plotDoc.Rd | 4 man/reexports.Rd | 4 man/scatterPlot.Rd | 6 man/themeVisOmop.Rd | 6 man/visOmopResults-package.Rd | 1 tests/testthat/test-fxTable.R | 18 - tests/testthat/test-plot.R | 310 ++++++++++++++++++++++++++++++ tests/testthat/test-visOmopTable.R | 14 - tests/testthat/test-visTable.R | 2 vignettes/a02_plots.Rmd | 95 +++++++++ vignettes/a03_quarto_reports.Rmd | 2 vignettes/a05_style.Rmd | 18 - 41 files changed, 1836 insertions(+), 651 deletions(-)
More information about visOmopResults at CRAN
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Title: One-Dimensional Probability Distribution Support for the
'spatstat' Family
Description: Estimation of one-dimensional probability distributions
including kernel density estimation, weighted empirical cumulative
distribution functions, Kaplan-Meier and reduced-sample estimators
for right-censored data, heat kernels, special distributions,
kernel properties, quantiles and integration.
Author: Adrian Baddeley [aut, cre, cph] ,
Tilman M. Davies [aut, ctb, cph] ,
Martin L. Hazelton [aut, ctb, cph] ,
Ege Rubak [aut, cph] ,
Rolf Turner [aut, cph] ,
Greg McSwiggan [ctb, cph]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.univar versions 3.1-7 dated 2026-03-18 and 3.2-0 dated 2026-05-18
DESCRIPTION | 14 +++++++------- MD5 | 39 ++++++++++++++++++++++----------------- NAMESPACE | 7 +++++++ NEWS | 17 +++++++++++++++++ R/farebro.R |only R/socs.R |only inst/doc/packagesizes.txt | 1 + inst/info/packagesizes.txt | 1 + man/densityBC.Rd | 2 ++ man/dkernel.Rd | 1 + man/dkernelBC.Rd | 4 ++++ man/dsocs.Rd |only man/ewcdf.Rd | 1 + man/farebro.Rd |only man/macros/defns.Rd | 1 + man/quantile.density.Rd | 1 + man/quantile.ewcdf.Rd | 1 + man/quantilefun.Rd | 1 + man/spatstat.univar-internal.Rd | 4 ++++ man/spatstat.univar-package.Rd | 18 ++++++++++++------ src/farebro.c |only src/init.c | 1 + src/proto.h | 1 + 23 files changed, 85 insertions(+), 30 deletions(-)
More information about spatstat.univar at CRAN
Permanent link
Title: Generalized Framework for Cross-Validation
Description: A general framework for the application of cross-validation schemes
to particular functions. By allowing arbitrary lists of results, origami
accommodates a range of cross-validation applications. This implementation
was first described by Coyle and Hejazi (2018) <doi:10.21105/joss.00512>.
Author: Jeremy Coyle [aut, cph] ,
Nima Hejazi [aut, cre] ,
Ivana Malenica [aut] ,
Rachael Phillips [aut]
Maintainer: Nima Hejazi <nh@nimahejazi.org>
Diff between origami versions 1.0.7 dated 2022-10-19 and 1.0.8 dated 2026-05-18
DESCRIPTION | 23 +- MD5 | 20 +- NEWS.md | 85 ++++++---- R/fold.R | 5 R/utils.R | 6 build/vignette.rds |binary inst/doc/generalizedCV.R | 56 ++++-- inst/doc/generalizedCV.Rmd | 58 ++++--- inst/doc/generalizedCV.html | 306 ++++++++++++++++++++------------------ tests/testthat/test-future_plan.R | 10 - vignettes/generalizedCV.Rmd | 58 ++++--- 11 files changed, 367 insertions(+), 260 deletions(-)
Title: Calculate Water Vapor Measures from Temperature and Dew Point
Description: Vapor pressure, relative humidity, absolute humidity, specific humidity, and mixing ratio are commonly used water vapor measures in meteorology. This R package provides functions for calculating saturation vapor pressure (hPa), partial water vapor pressure (Pa), relative humidity (%), absolute humidity (kg/m^3), specific humidity (kg/kg), and mixing ratio (kg/kg) from temperature (K) and dew point (K). Conversion functions between humidity measures are also provided.
Author: Jun Cai [aut, cre]
Maintainer: Jun Cai <caijun@fudan.edu.cn>
Diff between humidity versions 0.1.5 dated 2019-11-10 and 0.1.6 dated 2026-05-18
DESCRIPTION | 20 - MD5 | 68 ++--- NEWS.md | 15 - R/constant.R | 8 R/humidity.R | 62 ++-- README.md | 6 build/vignette.rds |binary inst/CITATION | 4 inst/doc/humidity-measures.Rmd | 16 - inst/doc/humidity-measures.html | 204 +++++++-------- inst/doc/ivt_ivs-sh.R | 14 - inst/doc/ivt_ivs-sh.Rmd | 2 inst/doc/ivt_ivs-sh.html | 531 ++++++++++++++++++++++++---------------- man/AH.Rd | 4 man/C2K.Rd | 6 man/Es.T0.Rd | 7 man/K2C.Rd | 4 man/L.Rd | 3 man/MR.Rd | 4 man/Md.Rd | 3 man/Mw.Rd | 3 man/RH.Rd | 6 man/Rw.Rd | 3 man/SH.Rd | 4 man/SH2RH.Rd | 6 man/SVP.ClaCla.Rd | 6 man/SVP.Murray.Rd | 6 man/SVP.Rd | 4 man/T0.Rd | 7 man/WVP1.Rd | 6 man/WVP2.Rd | 4 man/ivs.Rd | 6 man/ivt.Rd | 6 vignettes/humidity-measures.Rmd | 16 - vignettes/ivt_ivs-sh.Rmd | 2 35 files changed, 593 insertions(+), 473 deletions(-)
Title: Bayesian Generalized Linear Models (IID Samples)
Description: Provides Bayesian linear and generalized linear model fitting
with independent and identically distributed (iid) posterior samples. The
main functions mirror R's lm() and glm() interfaces while adding prior
family specifications for Gaussian, Poisson, binomial, and Gamma models
with log-concave likelihoods. Sampling for supported non-conjugate models
uses accept-reject methods based on likelihood subgradients as in Nygren
and Nygren (2006) <doi:10.1198/016214506000000357>. The package also
includes tools for prior setup, posterior summaries, prediction,
diagnostics, simulation, vignettes, and optional 'OpenCL' acceleration for
larger models.
Author: Kjell Nygren [aut, cre],
The R Core Team [ctb, cph] ,
The R Foundation [cph] ,
Ross Ihaka [ctb, cph] ,
Robert Gentleman [ctb, cph] ,
Simon Davies [ctb] ,
Morten Welinder [ctb, cph] ,
Martin Maechler [ctb]
Maintainer: Kjell Nygren <kjell.a.nygren@gmail.com>
Diff between glmbayes versions 0.9.3 dated 2026-05-04 and 0.9.5 dated 2026-05-18
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Title: Tools for the Analysis of Epidemiological Data
Description: Tools for the analysis of epidemiological and surveillance data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, computation of confidence intervals around incidence risk and incidence rate estimates and sample size calculations for cross-sectional, case-control and cohort studies. Surveillance tools include functions to calculate an appropriate sample size for 1- and 2-stage representative freedom surveys, functions to estimate surveillance system sensitivity and functions to support scenario tree modelling analyses.
Author: Mark Stevenson [aut, cre] ,
Evan Sergeant [aut],
Cord Heuer [ctb],
Telmo Nunes [ctb],
Cord Heuer [ctb],
Jonathon Marshall [ctb],
Javier Sanchez [ctb],
Ron Thornton [ctb],
Jeno Reiczigel [ctb],
Jim Robison-Cox [ctb],
Paola Sebastiani [ctb],
Peter Soly [...truncated...]
Maintainer: Mark Stevenson <mark.stevenson1@unimelb.edu.au>
Diff between epiR versions 2.0.92 dated 2026-04-08 and 2.0.93 dated 2026-05-18
DESCRIPTION | 8 +-- MD5 | 82 +++++++++++++++++------------------ NAMESPACE | 2 NEWS | 9 +++ R/epi.pooled.R | 59 ++++++++++++++++++++----- R/epi.sscc.R | 47 +++++++++++--------- R/epi.ssclus1estb.R | 43 +++++++++--------- R/epi.ssclus1estc.R | 54 ++++++++++------------- R/epi.ssclus2estb.R | 39 ++++++++-------- R/epi.ssclus2estc.R | 49 ++++++++------------ R/epi.sscohortc.R | 4 - R/epi.sscompb.R | 20 +++++--- R/epi.sscompc.R | 30 +++++++----- R/epi.sssimpleestb.R | 9 ++- R/epi.sssimpleestc.R | 11 ++-- R/epi.ssxsectn.R | 16 ++++-- inst/doc/epiR_descriptive_epi.html | 16 +++--- inst/doc/epiR_diagnostic_tests.R | 2 inst/doc/epiR_diagnostic_tests.Rmd | 6 +- inst/doc/epiR_diagnostic_tests.html | 48 +++++++++++++------- inst/doc/epiR_measures_of_assoc.Rmd | 4 - inst/doc/epiR_measures_of_assoc.html | 18 +++---- inst/doc/epiR_sample_size.R | 10 ++-- inst/doc/epiR_sample_size.Rmd | 10 ++-- inst/doc/epiR_sample_size.html | 14 ++--- inst/doc/epiR_surveillance.html | 14 ++--- man/epi.conf.Rd | 2 man/epi.pooled.Rd | 35 ++++++++++---- man/epi.sscc.Rd | 6 ++ man/epi.ssclus1estb.Rd | 10 ++-- man/epi.ssclus1estc.Rd | 10 ++-- man/epi.ssclus2estb.Rd | 12 +++-- man/epi.ssclus2estc.Rd | 10 ++-- man/epi.sscohortc.Rd | 8 ++- man/epi.sscompb.Rd | 6 ++ man/epi.sscompc.Rd | 6 ++ man/epi.sssimpleestb.Rd | 8 ++- man/epi.sssimpleestc.Rd | 6 ++ man/epi.ssxsectn.Rd | 6 ++ vignettes/epiR_diagnostic_tests.Rmd | 6 +- vignettes/epiR_measures_of_assoc.Rmd | 4 - vignettes/epiR_sample_size.Rmd | 10 ++-- 42 files changed, 452 insertions(+), 317 deletions(-)
Title: Automated Functions for Basic Statistical Tests
Description: Provides simple and intuitive functions for basic statistical analyses.
Methods include the t-test (Student 1908 <doi:10.1093/biomet/6.1.1>),
the Mann-Whitney U test (Mann and Whitney 1947 <doi:10.1214/aoms/1177730491>),
Pearson's correlation (Pearson 1895 <doi:10.1098/rspl.1895.0041>),
and analysis of variance (Fisher 1925, <doi:10.1007/978-1-4612-4380-9_5>).
Functions are compatible with 'ggplot2' and 'dplyr'.
Author: Luiz Garcia [aut, cre]
Maintainer: Luiz Garcia <luiz.cardoso@ufpr.br>
Diff between autotesteR versions 0.1.7 dated 2025-09-09 and 0.1.12 dated 2026-05-18
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-18 3.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-11-21 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-01-29 1.4.0
2024-10-28 1.3
2023-04-18 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-26 1.4
2015-02-09 1.3
2014-09-28 1.2
2013-09-12 1.1
2013-04-04 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-25 0.1.7
2024-10-01 0.1.6
2024-09-27 0.1.5
2024-01-19 0.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-04 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-22 0.4.1
2021-10-17 0.3.1
2021-09-21 0.3.0
2021-01-12 0.2.3
2020-08-03 0.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-04 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-20 2.0
2016-08-19 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-13 2.2
2016-08-29 2.1
2016-06-17 2.0
2016-06-13 1.5
2016-04-18 1.4
2016-04-02 1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-01-12 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-07-01 0.16.3
2021-08-12 0.16.2
2020-02-17 0.16.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-12-01 1.1.4
2025-03-26 1.1.3
2025-03-22 1.1.2
2024-07-23 1.1.1
2024-01-24 1.1.0
2023-05-04 1.0.4
2022-08-12 1.0.3